Citrus Sinensis ID: 040253

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSEVSI
Secondary Structure (PSIPRED)
ccccccEEEEcccccHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHcccccccccEEEEcccccccccHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEEccccccccccccccccHHHHHHccccccccHHHHcHHHHHHHHHHHHccccEEEEcccccccccccccccccHHHHHHHHcccccccccccccccEEHHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHcccccHHEEEEEccccccccHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccEEEEccccccccEcccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccEEEEEccEEEcccccccccHHHHHHHHHHcccccHcHHHccccEEEHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHcccccccccccccccccccEEEcHHHHHHcccEEEccHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MGSIAETVCVTGASGFIGSWLIMRLLERGYavratvrdpdnkKKVKHLLelpkasthLTLWKADlaeegnfdepirgctgvfhlatpmdfeskdpenevirpTINGMVSIMRACKNAKTVRRLVFTssagtldveehrkpvydetswsdldfVRSVKMTGWMYFVSKTLAEQAAWKFAeennidfisiipslvvgpfltssmppslitalspitrneahypiikqgqfvhldDLCSAHiflfehpnakgryicsshPATILELAKFLRekypefnvptefedvDENMKNMLFSskkltdlgfkfkyslddmftgavdtcrakgllpllcenhvsevsi
Flexible Loop (DISEMBL)
mgsiaetvcvtgasgfiGSWLIMRLLERGYAVRatvrdpdnkkkVKHLlelpkasthlTLWKADLAEEGNFDEPIRGCTGVFHLATPmdfeskdpenevIRPTINGMVSIMRACKNAKTVRRLVFtssagtldveehrkpvydetswsdldFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLlpllcenhvsevsi
Low Complexity Region (SEG)
MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSEVSI
Disordered region (IsUnstruct)
****AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATPMDF*******EVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPLLCENH******
Disordered Region (DISOPRED)
*****ET**VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPL***********
Disordered Region (DISEMBL)
MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSEVSI
Disordered Region (DISPRO)
****AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPLL**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSEVSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
P51110	337	Dihydroflavonol-4-reducta	no	no	0.961	0.964	0.796	1e-159
Q9XES5	348	Bifunctional dihydroflavo	N/A	no	0.967	0.939	0.767	1e-158
Q84KP0	347	Bifunctional dihydroflavo	N/A	no	0.976	0.951	0.757	1e-157
P51102	382	Dihydroflavonol-4-reducta	yes	no	0.994	0.879	0.744	1e-153
P51104	360	Dihydroflavonol-4-reducta	N/A	no	0.970	0.911	0.744	1e-149
P14720	380	Dihydroflavonol-4-reducta	N/A	no	0.949	0.844	0.725	1e-142
P51105	366	Dihydroflavonol-4-reducta	N/A	no	0.970	0.896	0.699	1e-139
P14721	446	Dihydroflavonol-4-reducta	N/A	no	0.964	0.730	0.680	1e-137
P51107	379	Dihydroflavonol-4-reducta	N/A	no	0.940	0.839	0.710	1e-136
P51103	364	Dihydroflavonol-4-reducta	N/A	no	0.946	0.879	0.696	1e-133

>sp|P51110|DFRA_VITVI Dihydroflavonol-4-reductase OS=Vitis vinifera GN=DFR PE=1 SV=1

 Score =  561 bits (1445), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 259/325 (79%), Positives = 298/325 (91%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLER   VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C  AKTV
Sbjct: 61  WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMT WMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSSH   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLL 325
           GF+FKYSL+DMFTGAVDTCRAKGLL
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLL 325

Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 1EC: 9

>sp|Q9XES5|DFRA_MALDO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1

 Score =  557 bits (1435), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 251/327 (76%), Positives = 301/327 (92%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +E+VCVTGASGFIGSWL+MRLLE GY VRATVRDP N+KKVKHLL+LPKA THLTL
Sbjct: 1   MGSESESVCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GC+GVFH+ATPMDFESKDPENEVI+PTING++ I++AC+ AKTV
Sbjct: 61  WKADLADEGSFDEAIQGCSGVFHVATPMDFESKDPENEVIKPTINGLLDILKACQKAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           R+LVFTSSAGT++VEEH+KPVYDE++WSD++F RSVKMTGWMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RKLVFTSSAGTVNVEEHQKPVYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LV+GPFL  SMPPSLIT LSPI RNE+HY IIKQGQ+VHLDDLC +HI+
Sbjct: 181 NNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           L+EHP A+GRYICSSH ATI EL K LREKYPE+N+PT+F+ +D+N++ + FSSKKL ++
Sbjct: 241 LYEHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEPVHFSSKKLREI 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPL 327
           GF+FKYSL+DMF GAVD CRAKGL+P+
Sbjct: 301 GFEFKYSLEDMFVGAVDACRAKGLIPI 327

Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, dihydrokaempferol, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), naringenin to a low extent (10%), but not 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate.

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

EC: 4

>sp|Q84KP0|DFRA_PYRCO Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Pyrus communis GN=DFR PE=1 SV=1

 Score =  556 bits (1432), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 250/330 (75%), Positives = 302/330 (91%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +E+VCVTGASGFIGSWL+MRLLE GY VRATVRDP N+KKVKHLL+LPKA THLTL
Sbjct: 1   MGSESESVCVTGASGFIGSWLVMRLLEHGYTVRATVRDPTNQKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GC+GVFH+ATPMDFES+DPENEVI+PTING++ I++AC+ AKTV
Sbjct: 61  WKADLADEGSFDEAIQGCSGVFHVATPMDFESRDPENEVIKPTINGLLDILKACQKAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           R+LVFTSSAGT++VEEH+KPVYDE++WSD++F RSVKMTGWMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RKLVFTSSAGTVNVEEHQKPVYDESNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKYAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LV+GPFL  SMPPSLIT LSPI RNE+HY IIKQGQ+VHLDDLC +HI+
Sbjct: 181 NNIDFITIIPTLVIGPFLMPSMPPSLITGLSPILRNESHYGIIKQGQYVHLDDLCLSHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           L++HP A+GRYICSSH ATI EL K LREKYPE+N+PT+F+ +D+N++ + FSSKKL ++
Sbjct: 241 LYKHPKAEGRYICSSHDATIHELVKMLREKYPEYNIPTKFKGIDDNLEPVHFSSKKLREI 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPLLCE 330
           GF+FKYSL+DMF GAVD CRAKGL+P+  E
Sbjct: 301 GFEFKYSLEDMFVGAVDACRAKGLIPIPAE 330

Bifunctional enzyme involved in the flavonoid metabolism. May use dihydroquercetin, eriodictyol, garbanzol (5-deoxydihydrokaempferol), dihydrofisetin (5-deoxydihydroquercetin), dihydrokaempferol to a low extent (5%), but not naringenin, 5-deoxynaringenin or butin (5-deoxyeriodictyol) as substrate.

Pyrus communis (taxid: 23211)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 3

EC: 4

>sp|P51102|DFRA_ARATH Dihydroflavonol-4-reductase OS=Arabidopsis thaliana GN=DFRA PE=3 SV=2

 Score =  539 bits (1389), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 251/337 (74%), Positives = 293/337 (86%), Gaps = 1/337 (0%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           M S  ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKV+HLL+LP A T LTL
Sbjct: 1   MVSQKETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTLLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADL+EEG++D+ I GC GVFH+ATPMDFESKDPENEVI+PT+NGM+ IM+AC  AKTV
Sbjct: 61  WKADLSEEGSYDDAINGCDGVFHVATPMDFESKDPENEVIKPTVNGMLGIMKACVKAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RR VFTSSAGT++VEEH+K VYDE  WSDL+F+ S KMTGWMYFVSKTLAE+AAW FAEE
Sbjct: 121 RRFVFTSSAGTVNVEEHQKNVYDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAWDFAEE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
             +DFISIIP+LVVGPF+T+SMPPSLITALSPITRNEAHY II+QGQ+VHLDDLC+AHIF
Sbjct: 181 KGLDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDDLCNAHIF 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           L+E   AKGRYICSSH ATIL ++KFLR KYPE+NVP+ FE VDEN+K++ FSSKKLTD+
Sbjct: 241 LYEQAAAKGRYICSSHDATILTISKFLRPKYPEYNVPSTFEGVDENLKSIEFSSKKLTDM 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPL-LCENHVSEV 336
           GF FKYSL++MF  +++TCR KG LP+ L    +SE+
Sbjct: 301 GFNFKYSLEEMFIESIETCRQKGFLPVSLSYQSISEI 337

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase OS=Dianthus caryophyllus GN=A PE=2 SV=1

 Score =  526 bits (1355), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 245/329 (74%), Positives = 286/329 (86%), Gaps = 1/329 (0%)

Query: 5   AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
            ETVCVTGASGFIGSWLIMRLLERGY VRATVRDPDN KKV+HLL+LP A T+LTLWKAD
Sbjct: 22  GETVCVTGASGFIGSWLIMRLLERGYTVRATVRDPDNTKKVQHLLDLPNAKTNLTLWKAD 81

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           L EEG+FD  + GCTGVFH+ATPMDFESKDPENE+I+PTINGM+ I+++C  AK +RR+V
Sbjct: 82  LHEEGSFDAAVDGCTGVFHIATPMDFESKDPENEMIKPTINGMLDILKSCVKAK-LRRVV 140

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
           FTSS GT++VE  +KPVYDET WS LDF+RSVKMTGWMYFVSK LAEQAAWK+A ENN++
Sbjct: 141 FTSSGGTVNVEATQKPVYDETCWSALDFIRSVKMTGWMYFVSKILAEQAAWKYAAENNLE 200

Query: 185 FISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH 244
           FISIIP LVVGPF+  SMPPSLITALSPITR E+HY IIKQGQFVHLDDLC +HIFL+E+
Sbjct: 201 FISIIPPLVVGPFIMPSMPPSLITALSPITRTESHYTIIKQGQFVHLDDLCMSHIFLYEN 260

Query: 245 PNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKF 304
           P A GRYI S+  ATI ++AK LRE+YPE+NVPT+F+D  E+M  + FSSKKLTDLGF+F
Sbjct: 261 PKANGRYIASACAATIYDIAKMLREEYPEYNVPTKFKDYKEDMGQVQFSSKKLTDLGFEF 320

Query: 305 KYSLDDMFTGAVDTCRAKGLLPLLCENHV 333
           KY L DM+T AV++CRAKGLLPL  E+H+
Sbjct: 321 KYGLKDMYTAAVESCRAKGLLPLSLEHHL 349

Dianthus caryophyllus (taxid: 3570)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P14720|DFRA_PETHY Dihydroflavonol-4-reductase OS=Petunia hybrida GN=DFRA PE=2 SV=2

 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 233/321 (72%), Positives = 277/321 (86%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           TVCVTGA+GFIGSWL+MRLLERGY V ATVRDP+NKKKVKHLLELPKA T+LTLWKADL 
Sbjct: 17  TVCVTGAAGFIGSWLVMRLLERGYNVHATVRDPENKKKVKHLLELPKADTNLTLWKADLT 76

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
            EG+FDE I+GC GVFH+ATPMDFESKDPENEVI+PT+ GM+SI+ +C  A TV+RLVFT
Sbjct: 77  VEGSFDEAIQGCQGVFHVATPMDFESKDPENEVIKPTVRGMLSIIESCAKANTVKRLVFT 136

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SSAGTLDV+E +K  YD+TSWSDLDF+ + KMTGWMYF SK LAE+AA + A++ NIDFI
Sbjct: 137 SSAGTLDVQEQQKLFYDQTSWSDLDFIYAKKMTGWMYFASKILAEKAAMEEAKKKNIDFI 196

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
           SIIP LVVGPF+T + PPSLITALS IT NEAHY IIKQGQ+VHLDDLC AHIFL+EHP 
Sbjct: 197 SIIPPLVVGPFITPTFPPSLITALSLITGNEAHYCIIKQGQYVHLDDLCEAHIFLYEHPK 256

Query: 247 AKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKY 306
           A GR+ICSSH A I ++AK +REK+PE+ VPTEF+ +D+++  + FSSKKLTD+GF+FKY
Sbjct: 257 ADGRFICSSHHAIIYDVAKMVREKWPEYYVPTEFKGIDKDLPVVSFSSKKLTDMGFQFKY 316

Query: 307 SLDDMFTGAVDTCRAKGLLPL 327
           +L+DM+ GA+DTCR K LLP 
Sbjct: 317 TLEDMYKGAIDTCRQKQLLPF 337

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P51105|DFRA_GERHY Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1

 Score =  494 bits (1272), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 230/329 (69%), Positives = 279/329 (84%), Gaps = 1/329 (0%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           TVCVTGA+GFIGSWL+MRLLERGY V ATVRDP + KKVKHLLELPKA T+L LWKADL 
Sbjct: 8   TVCVTGAAGFIGSWLVMRLLERGYVVHATVRDPGDLKKVKHLLELPKAQTNLKLWKADLT 67

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +EG+FDE I+GC GVFHLATPMDFESKDPENE+I+PTI G++SI+R+C  AKTV++LVFT
Sbjct: 68  QEGSFDEAIQGCHGVFHLATPMDFESKDPENEIIKPTIEGVLSIIRSCVKAKTVKKLVFT 127

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SSAGT++ +E +  VYDE+ WSDLDF+ S KMT WMYFVSKTLAE+AAW   + NNI FI
Sbjct: 128 SSAGTVNGQEKQLHVYDESHWSDLDFIYSKKMTAWMYFVSKTLAEKAAWDATKGNNISFI 187

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
           SIIP+LVVGPF+TS+ PPSL+TALS IT NEAHY IIKQGQ+VHLDDLC  HI+L+E+P 
Sbjct: 188 SIIPTLVVGPFITSTFPPSLVTALSLITGNEAHYSIIKQGQYVHLDDLCECHIYLYENPK 247

Query: 247 AKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKY 306
           AKGRYICSSH ATI +LAK +++K+PE+ +PT+F  +DE +  + FSSKKL D GF+FKY
Sbjct: 248 AKGRYICSSHDATIHQLAKIIKDKWPEYYIPTKFPGIDEELPIVSFSSKKLIDTGFEFKY 307

Query: 307 SLDDMFTGAVDTCRAKGLLPL-LCENHVS 334
           +L+DMF GA+DTCR KGLLP    +NH++
Sbjct: 308 NLEDMFKGAIDTCREKGLLPYSTIKNHIN 336

Gerbera hybrida (taxid: 18101)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P14721|DFRA_ANTMA Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1

 Score =  489 bits (1258), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 222/326 (68%), Positives = 275/326 (84%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           TVCVTGA+GFIGSWL+MRLLERGY VRATVRDP N KKVKHL+ELPKA T+LTLWKAD+ 
Sbjct: 19  TVCVTGAAGFIGSWLVMRLLERGYTVRATVRDPGNMKKVKHLIELPKADTNLTLWKADMT 78

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
            EG+FDE I+GC GVFHLAT M+F+S DPENEVI+PTI+GM++I+++C  AKTV++ +FT
Sbjct: 79  VEGSFDEAIQGCEGVFHLATSMEFDSVDPENEVIKPTIDGMLNIIKSCVQAKTVKKFIFT 138

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           +S GT++VEEH+KPVYDET  SD+DF+ S KMTGWMYFVSK LAE+A  + A+ENNIDFI
Sbjct: 139 TSGGTVNVEEHQKPVYDETDSSDMDFINSKKMTGWMYFVSKILAEKAGMEAAKENNIDFI 198

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
           SIIP LVVGPF+  + PPSLITALSPIT NEAHY IIKQ Q+VHLDDLC  HIFLFE+P 
Sbjct: 199 SIIPPLVVGPFIMPTFPPSLITALSPITGNEAHYSIIKQCQYVHLDDLCEGHIFLFEYPK 258

Query: 247 AKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKY 306
           A+GRYICSSH ATI ++AK + E +PE+++P EFE +D+++  + FSSKK+  +GF FKY
Sbjct: 259 AEGRYICSSHDATIYDIAKLITENWPEYHIPDEFEGIDKDIPVVSFSSKKMIGMGFIFKY 318

Query: 307 SLDDMFTGAVDTCRAKGLLPLLCENH 332
           +L+DM  GA+DTCR KG+LP   +N+
Sbjct: 319 TLEDMVRGAIDTCREKGMLPYSTKNN 344

Antirrhinum majus (taxid: 4151)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P51107|DFRA_SOLLC Dihydroflavonol-4-reductase OS=Solanum lycopersicum PE=2 SV=1

 Score =  486 bits (1251), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 228/321 (71%), Positives = 275/321 (85%), Gaps = 3/321 (0%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           TV VTG +GFIGSWL+MRLLERGY V ATVRDP+N+KKVKHLLELPKA T+LTLWKADLA
Sbjct: 19  TVWVTGGAGFIGSWLVMRLLERGYNVHATVRDPENQKKVKHLLELPKADTNLTLWKADLA 78

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
            EG+FDE I+GC GVFH+ATPMDFESKDPENEVI+PT+ GM+SI+ +C  A TV+RLVFT
Sbjct: 79  VEGSFDEAIQGCQGVFHVATPMDFESKDPENEVIKPTVRGMLSIIESCAKANTVKRLVFT 138

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SSAGTLDV+E +K  YDETSWSDLDF+ + KMTGWMYFVSK LAE+AA + A +NNIDFI
Sbjct: 139 SSAGTLDVQEDQKLFYDETSWSDLDFIYAKKMTGWMYFVSKILAEKAAMEEARKNNIDFI 198

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
           SIIP LVVGPF+TS+ PPSLITALS IT   AHY IIKQGQ+VHLDDLC AHIFL+EHP 
Sbjct: 199 SIIPPLVVGPFITSTFPPSLITALSLIT---AHYGIIKQGQYVHLDDLCEAHIFLYEHPK 255

Query: 247 AKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKY 306
           A+GR+ICSSH A I ++AK +R+K+PE+ VPTEF+ +D+++  + FSSKKL D+ F+FK+
Sbjct: 256 AEGRFICSSHHAIIYDVAKMVRQKWPEYYVPTEFKGIDKDLALVSFSSKKLMDIKFQFKH 315

Query: 307 SLDDMFTGAVDTCRAKGLLPL 327
           +L+DM+ GA++TCR K LLP 
Sbjct: 316 TLEDMYKGAIETCRQKQLLPF 336

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

>sp|P51103|DFRA_CALCH Dihydroflavonol-4-reductase OS=Callistephus chinensis GN=F PE=2 SV=1

 Score =  475 bits (1222), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/320 (69%), Positives = 273/320 (85%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           TVCVTGA+GFIGSWL+MRLLERGY VRATVR+P + KKVKHLLELPKA T+LTLWKADL 
Sbjct: 8   TVCVTGAAGFIGSWLVMRLLERGYIVRATVRNPGDMKKVKHLLELPKAETNLTLWKADLT 67

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +EG+FDE I GC GVFH+ATPMDFESKDPENE+I+PTI G++SI+R+C  AKTV++LV+T
Sbjct: 68  QEGSFDEAIEGCHGVFHVATPMDFESKDPENEIIKPTIEGILSIIRSCAKAKTVKKLVYT 127

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SSAGT++V+E + PVYDE+ WSDLDF+ S KMT WMYFVSKTLAE+AA + A+ENNIDF+
Sbjct: 128 SSAGTVNVQETQLPVYDESHWSDLDFIYSKKMTAWMYFVSKTLAEKAAMEAAKENNIDFV 187

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
           SIIP LVVGPF+  + PPSLITALS I   E+HY IIKQGQ+VHLDDLC  HIFL+E+P 
Sbjct: 188 SIIPPLVVGPFINPTFPPSLITALSLINGAESHYSIIKQGQYVHLDDLCECHIFLYENPE 247

Query: 247 AKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKY 306
           AKGRYICS   ATI +LA+ +++K+PE++VPT+F  +DE +  + FSSKKL D+GFKFKY
Sbjct: 248 AKGRYICSKQDATIHQLARMIKQKWPEYHVPTQFAGIDEELPTVSFSSKKLIDMGFKFKY 307

Query: 307 SLDDMFTGAVDTCRAKGLLP 326
            L+DMF GA+D+C+ KG LP
Sbjct: 308 DLEDMFKGAIDSCKEKGFLP 327

Callistephus chinensis (taxid: 13379)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
41351796	338	dihydroflavonol-4-reductase [Citrus sine	1.0	1.0	0.997	0.0
381392351	337	putative dihydroflavonol 4-reductase [Vi	0.964	0.967	0.806	1e-160
225458225	375	PREDICTED: dihydroflavonol-4-reductase [	0.964	0.869	0.803	1e-160
118137401	337	Chain D, Structure Of Dihydroflavonol Re	0.964	0.967	0.803	1e-160
302142524	931	unnamed protein product [Vitis vinifera]	0.946	0.343	0.803	1e-160
225196229	337	dihydroflavonol 4-reductase [Vitis amure	0.964	0.967	0.800	1e-159
326366181	346	dihydrokaempferol 4-reductase [Prunus av	0.982	0.959	0.771	1e-158
224062109	346	dihydroflavonol 4-reductase [Populus tri	0.991	0.968	0.779	1e-157
1706377	337	RecName: Full=Dihydroflavonol-4-reductas	0.961	0.964	0.796	1e-157
339715872	346	dihydroflavonol 4-reductase [Prunus pers	0.982	0.959	0.768	1e-157

>gi|41351796|gb|AAS00611.1| dihydroflavonol-4-reductase [Citrus sinensis] gi|68161218|gb|AAY87035.1| dihydroflavonol 4-reductase [Citrus sinensis] gi|68161220|gb|AAY87036.1| dihydroflavonol 4-reductase [Citrus sinensis]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/338 (99%), Positives = 337/338 (99%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL
Sbjct: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLAEEGNFDE IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV
Sbjct: 61  WKADLAEEGNFDEAIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE
Sbjct: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF
Sbjct: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL
Sbjct: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSEVSI 338
           GFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSEVSI
Sbjct: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSEVSI 338

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381392351|gb|AFG28176.1| putative dihydroflavonol 4-reductase [Vitis bellula]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 263/326 (80%), Positives = 302/326 (92%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C  AKTV
Sbjct: 61  WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMTGWMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTGWMYFVSKTLAEQAAWKYAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFISIIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 181 NNIDFISIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSS+   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 241 LFENPKAEGRYICSSNDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLP 326
           GF+FKYSL+DMFTGAVDTCRAKGLLP
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLLP 326

Source: Vitis bellula

Species: Vitis bellula

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458225|ref|XP_002281858.1| PREDICTED: dihydroflavonol-4-reductase [Vitis vinifera]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 262/326 (80%), Positives = 301/326 (92%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 39  MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 98

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C  AKTV
Sbjct: 99  WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 158

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMT WMYFVSKTLAEQAAWK+A+E
Sbjct: 159 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 218

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 219 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 278

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSSH   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 279 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 338

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLP 326
           GF+FKYSL+DMFTGAVDTCRAKGLLP
Sbjct: 339 GFEFKYSLEDMFTGAVDTCRAKGLLP 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118137401|pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. gi|118137402|pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. gi|158428822|pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol-4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|158428823|pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol-4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|158428824|pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol-4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|158428825|pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol-4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|160285642|pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol-4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|160285643|pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol-4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|168177310|pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|168177311|pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|168177312|pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|168177313|pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|209870409|pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|209870410|pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|209870411|pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|209870412|pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|209870413|pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|209870414|pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To Dihydroflavonol 4-Reductase Alters The Functional Geometry Of The Catalytic Site gi|1888485|emb|CAA72420.1| dihydroflavonol 4-reductase [Vitis vinifera] gi|59939328|gb|AAX12423.1| dihydroflavonol 4-reductase [Vitis vinifera]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 262/326 (80%), Positives = 301/326 (92%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C  AKTV
Sbjct: 61  WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMT WMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSSH   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLP 326
           GF+FKYSL+DMFTGAVDTCRAKGLLP
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLLP 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142524|emb|CBI19727.3| unnamed protein product [Vitis vinifera]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 262/326 (80%), Positives = 301/326 (92%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 595 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 654

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C  AKTV
Sbjct: 655 WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 714

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMT WMYFVSKTLAEQAAWK+A+E
Sbjct: 715 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 774

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 775 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 834

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSSH   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 835 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 894

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLP 326
           GF+FKYSL+DMFTGAVDTCRAKGLLP
Sbjct: 895 GFEFKYSLEDMFTGAVDTCRAKGLLP 920

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225196229|gb|ACN82380.1| dihydroflavonol 4-reductase [Vitis amurensis]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 261/326 (80%), Positives = 301/326 (92%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDP NEVI+PTI GM+ IM++C  AKTV
Sbjct: 61  WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPGNEVIKPTIEGMLGIMKSCAAAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           R+LVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMTGWMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RKLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTGWMYFVSKTLAEQAAWKYAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFISIIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 181 NNIDFISIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSS+   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 241 LFENPKAEGRYICSSNDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLP 326
           GF+FKYSL+DMFTGAVDTCRAKGLLP
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLLP 326

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326366181|gb|ADZ54784.1| dihydrokaempferol 4-reductase [Prunus avium]

 Score =  563 bits (1452), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 256/332 (77%), Positives = 302/332 (90%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +E+VCVTGASGFIGSWL+MRLLERGY VRATVRDP N+KKVKHLL+LPKA THLTL
Sbjct: 1   MGSQSESVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANQKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTING++ IM+AC  AKTV
Sbjct: 61  WKADLADEGSFDEAIQGCTGVFHVATPMDFESKDPENEVIKPTINGVLDIMKACLKAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++VEEH++P YDET+WSD++F RSVKMTGWMYFVSKTLAEQAAWKFA+E
Sbjct: 121 RRLVFTSSAGTVNVEEHQRPSYDETNWSDVEFCRSVKMTGWMYFVSKTLAEQAAWKFAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LV+GPFL SSMPPSLIT LSP+T N +HY IIK+GQFVHLDDLC +HI+
Sbjct: 181 NNIDFITIIPTLVIGPFLMSSMPPSLITGLSPLTGNTSHYSIIKRGQFVHLDDLCLSHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           L+EHP A+GRYICSSH ATI ++AK L EKYPE+N+PT+F++++ N+  + FSSKKLTD 
Sbjct: 241 LYEHPKAEGRYICSSHDATIYDIAKLLXEKYPEYNIPTKFDNIEXNLTKVHFSSKKLTDQ 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPLLCENH 332
           GF+FKYSL+DMF GAVDTCRAKGL+P+  E H
Sbjct: 301 GFEFKYSLEDMFVGAVDTCRAKGLIPIPAEKH 332

Source: Prunus avium

Species: Prunus avium

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062109|ref|XP_002300759.1| dihydroflavonol 4-reductase [Populus trichocarpa] gi|222842485|gb|EEE80032.1| dihydroflavonol 4-reductase [Populus trichocarpa]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 261/335 (77%), Positives = 301/335 (89%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MG+ AETVCVTGASGFIGSWLIMRLLE+GYAVRATVRDPDN KKV HLLELPKASTHLTL
Sbjct: 1   MGTEAETVCVTGASGFIGSWLIMRLLEKGYAVRATVRDPDNMKKVTHLLELPKASTHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADL+ EG++DE I+GCTGVFH+ATPMDFESKDPENEVI+PTING++ IMRAC N+KTV
Sbjct: 61  WKADLSVEGSYDEAIQGCTGVFHVATPMDFESKDPENEVIKPTINGVLDIMRACANSKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           R++VFTSSAGT+DVEE RKPVYDE+ WSDLDFV+S+KMTGWMYFVSKTLAEQAAWKFA+E
Sbjct: 121 RKIVFTSSAGTVDVEEKRKPVYDESCWSDLDFVQSIKMTGWMYFVSKTLAEQAAWKFAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NN+DFISIIP+LVVGPF+  SMPPSL+TALS IT NEAHY I+KQG +VHLDDLC +HIF
Sbjct: 181 NNLDFISIIPTLVVGPFIMQSMPPSLLTALSLITGNEAHYGILKQGHYVHLDDLCMSHIF 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           L+E+P A+GRYIC+S  A I +LAK LREKYPE+NVP +F+D+DEN+  + FSSKKLTDL
Sbjct: 241 LYENPKAEGRYICNSDDANIHDLAKLLREKYPEYNVPAKFKDIDENLACVAFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSE 335
           GF+FKYSL+DMF GAV+TCR KGL+PL     V E
Sbjct: 301 GFEFKYSLEDMFAGAVETCREKGLIPLSHRKQVVE 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1706377|sp|P51110.1|DFRA_VITVI RecName: Full=Dihydroflavonol-4-reductase; Short=DFR; AltName: Full=Dihydrokaempferol 4-reductase gi|499018|emb|CAA53578.1| dihydroflavonol reductase [Vitis vinifera]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 259/325 (79%), Positives = 298/325 (91%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLER   VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERRLTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C  AKTV
Sbjct: 61  WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMT WMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSSH   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLL 325
           GF+FKYSL+DMFTGAVDTCRAKGLL
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLL 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339715872|gb|AEJ88220.1| dihydroflavonol 4-reductase [Prunus persica]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 255/332 (76%), Positives = 300/332 (90%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MG  +E+VCVTGASGFIGSWL+MRLLERGY VRATVRDP N+KKVKHLLELPKA THLTL
Sbjct: 1   MGPESESVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNQKKVKHLLELPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTING++ I++AC  AKTV
Sbjct: 61  WKADLADEGSFDEAIQGCTGVFHVATPMDFESKDPENEVIKPTINGVLDILKACLKAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++VEEH+K  YDET WSD++F RSVKMTGWMYF SKTLAEQAAWKFA+E
Sbjct: 121 RRLVFTSSAGTVNVEEHQKSYYDETDWSDVEFCRSVKMTGWMYFASKTLAEQAAWKFAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LV+GPFL  SMPPSLIT LSP+T N +HY IIK+GQFVHLDDLC +HI+
Sbjct: 181 NNIDFITIIPTLVIGPFLMPSMPPSLITGLSPLTGNTSHYSIIKRGQFVHLDDLCLSHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           L+EHP A+GRYICSSH ATI ++AK LREKYPE+N+PT+F++++EN+ N+ FSSKKLTD 
Sbjct: 241 LYEHPKAEGRYICSSHDATIYDIAKLLREKYPEYNIPTKFDNIEENLTNIHFSSKKLTDH 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPLLCENH 332
           GF+FKYSL+DMF GAVDTCRA+GL+P+  E H
Sbjct: 301 GFEFKYSLEDMFVGAVDTCRARGLIPIPAEKH 332

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2165427	382	DFR "dihydroflavonol 4-reducta	0.994	0.879	0.744	5.1e-138
TAIR|locus:2195733	340	BAN "BANYULS" [Arabidopsis tha	0.943	0.938	0.393	2.4e-67
TAIR|locus:2122093	326	DRL1 "dihydroflavonol 4-reduct	0.911	0.944	0.432	1.7e-66
TAIR|locus:2050882	364	BEN1 [Arabidopsis thaliana (ta	0.940	0.873	0.436	8.5e-65
TAIR|locus:2033904	325	AT1G51410 [Arabidopsis thalian	0.928	0.966	0.402	9.3e-59
TAIR|locus:2131734	354	AT4G27250 [Arabidopsis thalian	0.943	0.901	0.387	1.1e-57
TAIR|locus:2150315	326	AT5G19440 [Arabidopsis thalian	0.917	0.950	0.402	4.8e-55
TAIR|locus:2033394	319	AT1G66800 [Arabidopsis thalian	0.914	0.968	0.401	2.1e-54
TAIR|locus:2012315	322	AT1G09510 [Arabidopsis thalian	0.884	0.928	0.403	2.4e-53
TAIR|locus:2025832	332	CCR2 "cinnamoyl coa reductase"	0.934	0.951	0.393	6.3e-53

TAIR|locus:2165427 DFR "dihydroflavonol 4-reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
 Identities = 251/337 (74%), Positives = 293/337 (86%)

Query:     1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
             M S  ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKV+HLL+LP A T LTL
Sbjct:     1 MVSQKETVCVTGASGFIGSWLVMRLLERGYFVRATVRDPGNLKKVQHLLDLPNAKTLLTL 60

Query:    61 WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
             WKADL+EEG++D+ I GC GVFH+ATPMDFESKDPENEVI+PT+NGM+ IM+AC  AKTV
Sbjct:    61 WKADLSEEGSYDDAINGCDGVFHVATPMDFESKDPENEVIKPTVNGMLGIMKACVKAKTV 120

Query:   121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
             RR VFTSSAGT++VEEH+K VYDE  WSDL+F+ S KMTGWMYFVSKTLAE+AAW FAEE
Sbjct:   121 RRFVFTSSAGTVNVEEHQKNVYDENDWSDLEFIMSKKMTGWMYFVSKTLAEKAAWDFAEE 180

Query:   181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
               +DFISIIP+LVVGPF+T+SMPPSLITALSPITRNEAHY II+QGQ+VHLDDLC+AHIF
Sbjct:   181 KGLDFISIIPTLVVGPFITTSMPPSLITALSPITRNEAHYSIIRQGQYVHLDDLCNAHIF 240

Query:   241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
             L+E   AKGRYICSSH ATIL ++KFLR KYPE+NVP+ FE VDEN+K++ FSSKKLTD+
Sbjct:   241 LYEQAAAKGRYICSSHDATILTISKFLRPKYPEYNVPSTFEGVDENLKSIEFSSKKLTDM 300

Query:   301 GFKFKYSLDDMFTGAVDTCRAKGLLPL-LCENHVSEV 336
             GF FKYSL++MF  +++TCR KG LP+ L    +SE+
Sbjct:   301 GFNFKYSLEEMFIESIETCRQKGFLPVSLSYQSISEI 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042406 "extrinsic to endoplasmic reticulum membrane" evidence=TAS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA;IMP;TAS

GO:0045552 "dihydrokaempferol 4-reductase activity" evidence=IMP;TAS

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:2195733 BAN "BANYULS" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 130/330 (39%), Positives = 217/330 (65%)

Query:     5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
             ++  CV G +G + S LI  LL+ GY V  TVRDP+N+KK+ HL +L +    L ++KAD
Sbjct:    10 SKKACVIGGTGNLASILIKHLLQSGYKVNTTVRDPENEKKIAHLRKLQELGD-LKIFKAD 68

Query:    65 LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
             L +E +F+    GC  +FH+ATP++F+S+DPE ++I+P I G+++++++C  +K+V+R++
Sbjct:    69 LTDEDSFESSFSGCEYIFHVATPINFKSEDPEKDMIKPAIQGVINVLKSCLKSKSVKRVI 128

Query:   125 FTSSAGTLDVEEHRKP--VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
             +TSSA  + +        V +E +W+D++F+   K   W Y +SK LAE+ AW+FA+EN 
Sbjct:   129 YTSSAAAVSINNLSGTGIVMNEENWTDVEFLTEEKPFNWGYPISKVLAEKTAWEFAKENK 188

Query:   183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ-------FVHLDDLC 235
             I+ +++IP+L+ G  L S  P SL  ++S IT  E H   +K+ Q       FVH+DDL 
Sbjct:   189 INLVTVIPALIAGNSLLSDPPSSLSLSMSFITGKEMHVTGLKEMQKLSGSISFVHVDDLA 248

Query:   236 SAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSK 295
              AH+FL E   A GRYIC ++  ++ E+A FL ++YP++NV +EFE+   ++  +  SS+
Sbjct:   249 RAHLFLAEKETASGRYICCAYNTSVPEIADFLIQRYPKYNVLSEFEE-GLSIPKLTLSSQ 307

Query:   296 KLTDLGFKFKYSLDDMFTGAVDTCRAKGLL 325
             KL + GF+F+Y +++M+   ++   +KGL+
Sbjct:   308 KLINEGFRFEYGINEMYDQMIEYFESKGLI 337

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0033729 "anthocyanidin reductase activity" evidence=IDA

GO:0009964 "negative regulation of flavonoid biosynthetic process" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=ISS

TAIR|locus:2122093 DRL1 "dihydroflavonol 4-reductase-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 140/324 (43%), Positives = 204/324 (62%)

Query:     8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
             VCVTGASGF+ SWL+ RLL  GY V  TVRDP N+KK+ HL +L  A   L L KADL E
Sbjct:     8 VCVTGASGFLASWLVKRLLLEGYEVIGTVRDPGNEKKLAHLWKLEGAKERLRLVKADLME 67

Query:    68 EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
             EG+FD  I GC GVFH A+P+   + +PE E++RP I G ++++R+C+   +++R+V TS
Sbjct:    68 EGSFDNAIMGCQGVFHTASPVLKPTSNPEEEILRPAIEGTLNVLRSCRKNPSLKRVVLTS 127

Query:   128 SAGTLDVEEHRKPVY--DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
             S+ T+ + +   P    DE+ W+ ++  +  ++  W Y +SKTLAEQAAWKF+EEN ID 
Sbjct:   128 SSSTVRIRDDFDPKIPLDESIWTSVELCKRFQV--W-YALSKTLAEQAAWKFSEENGIDL 184

Query:   186 ISIIPSLVVGPFLTSSMPPSLITALSPIT---RNEAH-YPIIKQGQFVHLDDLCSAHIFL 241
             ++++PS +VGP    S+PP L +  S +    + E   +    Q  +VH+DD+   HI +
Sbjct:   185 VTVLPSFLVGP----SLPPDLCSTASDVLGLLKGETEKFQWHGQMGYVHIDDVARTHIVV 240

Query:   242 FEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLG 301
             FEH  A+GRYICSS+  ++ EL  FL  +YP   +P  FE +  N  +  F + K+  LG
Sbjct:   241 FEHEAAQGRYICSSNVISLEELVSFLSARYPSLPIPKRFEKL--NRLHYDFDTSKIQSLG 298

Query:   302 FKFKYSLDDMFTGAVDTCRAKGLL 325
              KFK SL++MF   + +   +G L
Sbjct:   299 LKFK-SLEEMFDDCIASLVEQGYL 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0080110 "sporopollenin biosynthetic process" evidence=IMP

TAIR|locus:2050882 BEN1 [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 142/325 (43%), Positives = 202/325 (62%)

Query:     8 VCVTGASGFIGSWLIMRLLERGYAVRATVR--DPDNKKKVKHLLELPKASTHLTLWKADL 65
             VCVTG SGF+ SWLIMRLL+RGY+VRATVR     NKK + +L ELP AS  L ++ ADL
Sbjct:    40 VCVTGGSGFVASWLIMRLLQRGYSVRATVRTNSEGNKKDISYLTELPFASERLQIFTADL 99

Query:    66 AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
              E  +F   I GC  VFH+A PMD  S + E  V + T+ G++ I+++C +AKTV+R  +
Sbjct:   100 NEPESFKPAIEGCKAVFHVAHPMDPNSNETEETVTKRTVQGLMGILKSCLDAKTVKRFFY 159

Query:   126 TSSAGTLDVEEHRKP---VYDETSWSDLDFVRSVK--MTGWMYFVSKTLAEQAAWKFAEE 180
             TSSA T+             DE+ WSD++  R+ K       Y VSK  AE AA +F  +
Sbjct:   160 TSSAVTVFYSGGNGGGGGEVDESVWSDVEVFRNQKEKRVSSSYVVSKMAAETAALEFGGK 219

Query:   181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
             N ++ ++++  LVVGPF++SS+P S+  +L+ +  N     +      VH+DD+  A IF
Sbjct:   220 NGLEVVTLVIPLVVGPFISSSLPSSVFISLAMLFGNYKEKYLFDTYNMVHIDDVARAMIF 279

Query:   241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
             L E P AKGRYICSS    I E+ +FL  K+P+F +P+   +  +  K M  SSKKL   
Sbjct:   280 LLEKPVAKGRYICSSVEMKIDEVFEFLSTKFPQFQLPSIDLNKYKVEKRMGLSSKKLKSA 339

Query:   301 GFKFKYSLDDMFTGAVDTCRAKGLL 325
             GF+FKY  +++F+GA+ +C+A+G L
Sbjct:   340 GFEFKYGAEEIFSGAIRSCQARGFL 364

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0009813 "flavonoid biosynthetic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0010422 "regulation of brassinosteroid biosynthetic process" evidence=IMP

GO:0016131 "brassinosteroid metabolic process" evidence=IMP

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2033904 AT1G51410 [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 130/323 (40%), Positives = 194/323 (60%)

Query:     6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
             +TVCVTGASG+I SW++  LL RGY V+A+VRDP++ +K +HLL L  A   L L+KA+L
Sbjct:     7 KTVCVTGASGYIASWIVKLLLLRGYTVKASVRDPNDPRKTEHLLALEGAEERLKLFKANL 66

Query:    66 AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
              EEG+FD  I GC GVFH A+P   + KDP+ E++ P + G ++++ +C    +V+R+V 
Sbjct:    67 LEEGSFDSAIDGCEGVFHTASPFYHDVKDPQAELLDPAVKGTINVLSSCLKTSSVKRVVL 126

Query:   126 TSSAGTLDVEEH-RKP--VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
             TSS   +      R P  + DET ++D D+ R+ K+  W Y +SKTLAE AAWKFA+ENN
Sbjct:   127 TSSIAAVAFNGMPRTPETIVDETWFADPDYCRASKL--W-YVLSKTLAENAAWKFAKENN 183

Query:   183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLF 242
             +  +SI P++V+GP L  ++  S    LS I +    +P    G +V++ D+ +AHI  F
Sbjct:   184 LQLVSINPAMVIGPLLQPTLNTSAAAVLSLI-KGAQTFPNATFG-WVNVKDVANAHIQAF 241

Query:   243 EHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGF 302
             E+P+A GRY      A   E+   L + YP+F +P +  D    +     S +K   LG 
Sbjct:   242 ENPDADGRYCLVERVAHYSEVVNILHDLYPDFQLPEKCADEKIYIPTYKVSKEKAESLGV 301

Query:   303 KFKYSLDDMFTGAVDTCRAKGLL 325
             +F   L+      V++ R KG +
Sbjct:   302 EF-VPLEVSIKETVESLRDKGFI 323

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2131734 AT4G27250 [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
 Identities = 134/346 (38%), Positives = 207/346 (59%)

Query:     7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
             T CVTGASG+IGSWL+  LL+RGY V AT+RD     K ++     K +  L L++ADL 
Sbjct:    12 TYCVTGASGYIGSWLVKSLLQRGYTVHATLRD---LAKSEYFQSKWKENERLRLFRADLR 68

Query:    67 EEGNFDEPIRGCTGVFHLATPMDFE-SKDPEN-------EVIRPTINGMVSIMRACKNAK 118
             ++G+FD+ ++GC GVFH+A  M+F+ S D  N       +VI P + G+ +++ +C  +K
Sbjct:    69 DDGSFDDAVKGCDGVFHVAASMEFDISSDHVNLESYVQSKVIEPALKGVRNVLSSCLKSK 128

Query:   119 TVRRLVFTSSAGTL---DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAW 175
             +V+R+VFTSS  TL   D  E  +   DET  + +D V   + +GW+Y +SK ++E+ A+
Sbjct:   129 SVKRVVFTSSISTLTAKDENERMRSFVDETCKAHVDHVLKTQASGWIYVLSKLVSEEEAF 188

Query:   176 KFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII-----KQGQF-- 228
             ++A+E  +D +S+I + V GPFLT  +P S+   LSPIT +   + I+     + G    
Sbjct:   189 RYAKERGMDLVSVITTTVSGPFLTPFVPSSVQVLLSPITGDSKLFAILSAVNKRMGSIAL 248

Query:   229 VHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELA--KFLREKYPEFNVPTEFEDVDEN 286
             VH++D+C AH+FL E P AKG+YIC      + EL    F ++   +     E E+  E 
Sbjct:   249 VHIEDICRAHLFLMEQPKAKGQYICCVDNIDMHELMLHHFSKDYLCKVQKVNEDEEEREC 308

Query:   287 MKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPLLCENH 332
             MK ++ SSKKL +LGF++KY ++++    +D    K   P L  NH
Sbjct:   309 MKPII-SSKKLRELGFEYKYGIEEIVDQTIDAS-IKIKFPTL--NH 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=ISS

GO:0050662 "coenzyme binding" evidence=IEA

GO:0009062 "fatty acid catabolic process" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2150315 AT5G19440 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 130/323 (40%), Positives = 187/323 (57%)

Query:     6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
             + VCVTGASG+I SWL+  LL RGY V+A+VRDP + KK +HL+ L  A   L L+KADL
Sbjct:     8 KVVCVTGASGYIASWLVKFLLSRGYTVKASVRDPSDPKKTQHLVSLEGAKERLHLFKADL 67

Query:    66 AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
              E+G+FD  I GC GVFH A+P   ++KDP+ E+I P + G ++++ +C  A +V+R+V 
Sbjct:    68 LEQGSFDSAIDGCHGVFHTASPFFNDAKDPQAELIDPAVKGTLNVLNSCAKASSVKRVVV 127

Query:   126 TSSAGTLDVE-EHRKP--VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
             TSS   +    + R P    DET +SD +   + KM  W Y +SKTLAE AAWK A+E  
Sbjct:   128 TSSMAAVGYNGKPRTPDVTVDETWFSDPELCEASKM--W-YVLSKTLAEDAAWKLAKEKG 184

Query:   183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLF 242
             +D ++I P++V+GP L  ++  S    L+ I   +  +P +  G +V++ D+ +AHI  F
Sbjct:   185 LDIVTINPAMVIGPLLQPTLNTSAAAILNLINGAKT-FPNLSFG-WVNVKDVANAHIQAF 242

Query:   243 EHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDEN--MKNMLFSSKKLTDL 300
             E P+A GRY          E+   LRE YP  N+P     VDEN  +     S  K   L
Sbjct:   243 EVPSANGRYCLVERVVHHSEIVNILRELYP--NLPLPERCVDENPYVPTYQVSKDKTRSL 300

Query:   301 GFKFKYSLDDMFTGAVDTCRAKG 323
             G  +   L       V++ + KG
Sbjct:   301 GIDY-IPLKVSIKETVESLKEKG 322

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2033394 AT1G66800 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 131/326 (40%), Positives = 189/326 (57%)

Query:     1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
             M    + VCVTGASG+I SW++  LL RGY VRATVR+P + KK  HLL L  AS  L L
Sbjct:     1 MNGEGKVVCVTGASGYIASWIVKLLLLRGYTVRATVRNPMDTKKTNHLLTLEGASERLKL 60

Query:    61 WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
             +K+DL EEG+FD+ I GC GVFH A+P+     DP+ E+I P +NG ++++R C    +V
Sbjct:    61 FKSDLLEEGSFDQAIEGCDGVFHTASPVSLTVTDPQTEMIDPAVNGTLNVLRTCAKVSSV 120

Query:   121 RRLVFTSS-AGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
             +R++ TSS A TL +  +   V DET ++DL    ++K   W Y  SKTLAE+ AW+FA+
Sbjct:   121 KRVIVTSSTAATLSINPN--DVVDETVFTDLSVYLAMK--AW-YGYSKTLAEETAWRFAK 175

Query:   180 ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPIT-RNEAHYPIIKQGQFVHLDDLCSAH 238
             EN ID + + P  V+GP L  ++  S+   +  I  +N ++    +   F+ + D+  AH
Sbjct:   176 ENGIDLVVMNPGNVIGPVLQPTLNYSVEVIVDLINGKNPSNSFYYR---FMDVRDVSLAH 232

Query:   239 IFLFEHPNAKGRYICSSHPATILELAKFLREKYPEF-NVPTEFE-DVDENMKNMLFSSKK 296
             I  FE P+A GRYI +    T+ ++ K L E +P+   V  + E +V E    +     K
Sbjct:   233 IKAFEVPSASGRYILADPDVTMKDIQKLLHELFPDLCRVDKDNENEVGEMAYKVCVD--K 290

Query:   297 LTDLGFKF---KYSLDDMFTGAVDTC 319
             L  LG +F   K SL D      + C
Sbjct:   291 LKSLGIEFTPIKESLKDTVVSLKERC 316

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=ISS

GO:0050662 "coenzyme binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS

TAIR|locus:2012315 AT1G09510 [Arabidopsis thaliana (taxid:3702)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 124/307 (40%), Positives = 179/307 (58%)

Query:     1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
             M    + VCVTGASG++ SW++  LL RGY VRATVRDP ++KK +HLL L  A   L L
Sbjct:     1 MADGGKMVCVTGASGYVASWIVKLLLLRGYTVRATVRDPSDEKKTEHLLALDGAKEKLKL 60

Query:    61 WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
             +KADL EEG+F++ I GC  VFH A+P+     DP+ E+I P + G +++++ C    +V
Sbjct:    61 FKADLLEEGSFEQAIEGCDAVFHTASPVSLTVTDPQIELIDPAVKGTLNVLKTCAKVSSV 120

Query:   121 RRLVFTSS-AGTLDVEEHRKP--VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKF 177
             +R++ TSS A  L  E    P  + DE+ +SD +F    K+  W Y +SKTLAE  AW+F
Sbjct:   121 KRVIVTSSMAAVLFREPTLGPNDLVDESCFSDPNFCTEKKL--W-YALSKTLAEDEAWRF 177

Query:   178 AEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSA 237
             A+E  +D + I P LV+GP L  S+  S+   +  IT  +    I K  + V + D+  A
Sbjct:   178 AKEKGLDLVVINPGLVLGPLLKPSLTFSVNVIVELITGKDNF--INKDFRLVDVRDVALA 235

Query:   238 HIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKL 297
             HI  FE P+A GRYI      TI ++ K LRE +P+ N+  + E  +          +K+
Sbjct:   236 HIKAFETPSANGRYIIEGPVVTINDIEKILREFFPDLNLGNKGEASEIIPVIYKLCVEKV 295

Query:   298 TDLGFKF 304
               LG +F
Sbjct:   296 KSLGIEF 302

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=ISS

GO:0050662 "coenzyme binding" evidence=IEA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS

TAIR|locus:2025832 CCR2 "cinnamoyl coa reductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 133/338 (39%), Positives = 197/338 (58%)

Query:     8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
             VCVTGA G+I SW++  LLERGY VR TVR+P + K   HL EL  A   LTL  ADL +
Sbjct:     8 VCVTGAGGYIASWIVKLLLERGYTVRGTVRNPTDPKN-NHLRELQGAKERLTLHSADLLD 66

Query:    68 EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
                    I GC GVFH A+PM   + DPE  ++ P +NG   ++ A   AK V+R+VFTS
Sbjct:    67 YEALCATIDGCDGVFHTASPM---TDDPET-MLEPAVNGAKFVIDAAAKAK-VKRVVFTS 121

Query:   128 SAGTLDVEEHR--KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
             S G + +  +R  + + DE  WSDLDF ++ K   W Y   K LAEQ+AW+ A+   +D 
Sbjct:   122 SIGAVYMNPNRDTQAIVDENCWSDLDFCKNTK--NW-YCYGKMLAEQSAWETAKAKGVDL 178

Query:   186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP 245
             + + P LV+GP L S++  SL+  L  +T +   Y  + Q  +V + D+   H+ ++E P
Sbjct:   179 VVLNPVLVLGPPLQSAINASLVHILKYLTGSAKTYANLTQ-VYVDVRDVALGHVLVYEAP 237

Query:   246 NAKGRYICSS---HPATILE-LAKFLREKYPEFNVPTEFEDV-DENMKNMLFSSKKLTDL 300
             +A GRYI +    H   ++E LAKF    +PE+ +PT+  D  +   K   F+++K+ DL
Sbjct:   238 SASGRYILAETALHRGEVVEILAKF----FPEYPLPTKCSDEKNPRAKPYKFTTQKIKDL 293

Query:   301 GFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHVSEVSI 338
             G +FK     ++  +V + + KG LPL  +++ +EV I
Sbjct:   294 GLEFKPIKQSLYE-SVKSLQEKGHLPLPQDSNQNEVII 330

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0009809 "lignin biosynthetic process" evidence=NAS

GO:0050662 "coenzyme binding" evidence=IEA

GO:0016621 "cinnamoyl-CoA reductase activity" evidence=IDA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0042754 "negative regulation of circadian rhythm" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P51105	DFRA_GERHY	1, ., 1, ., 1, ., 2, 1, 9	0.6990	0.9704	0.8961	N/A	no
P51104	DFRA_DIACA	1, ., 1, ., 1, ., 2, 1, 9	0.7446	0.9704	0.9111	N/A	no
P51107	DFRA_SOLLC	1, ., 1, ., 1, ., 2, 1, 9	0.7102	0.9408	0.8390	N/A	no
P51106	DFRA_HORVU	1, ., 1, ., 1, ., 2, 1, 9	0.6562	0.9467	0.9039	N/A	no
P51103	DFRA_CALCH	1, ., 1, ., 1, ., 2, 1, 9	0.6968	0.9467	0.8791	N/A	no
P51102	DFRA_ARATH	1, ., 1, ., 1, ., 2, 1, 9	0.7448	0.9940	0.8795	yes	no
P51109	DFRA_MEDSA	1, ., 1, ., 1, ., 2, 1, 9	0.7419	0.6420	1.0	N/A	no
P51108	DFRA_MAIZE	1, ., 1, ., 1, ., 2, 1, 9	0.6552	0.9497	0.8991	N/A	no
Q84KP0	DFRA_PYRCO	1, ., 1, ., 1, ., 2, 3, 4	0.7575	0.9763	0.9510	N/A	no
Q9XES5	DFRA_MALDO	1, ., 1, ., 1, ., 2, 3, 4	0.7675	0.9674	0.9396	N/A	no
P51110	DFRA_VITVI	1, ., 1, ., 1, ., 2, 1, 9	0.7969	0.9615	0.9643	no	no
P14720	DFRA_PETHY	1, ., 1, ., 1, ., 2, 1, 9	0.7258	0.9497	0.8447	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
4th Layer	1.1.1.219	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DFR1	dihydroflavonol 4-reductase (EC-1.1.1.219) (346 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	CHI1	SubName- Full=Putative uncharacterized protein; (224 aa)						•	•		0.947
	gw1.5228.1.1	annotation not avaliable (120 aa)						•			0.899
	F3'5'H1	flavonoid 3',5'-hydroxylase (EC-1.14.13.88) (505 aa)						•			0.899
	CYP75A13	cytochrome P450 flavonoid 3',5'-hydroxylase (EC-1.14.13.88) (508 aa)						•			0.899
	F3H1	flavonoid 3'-hydroxylase (EC-1.14.13.21) (521 aa)						•			0.899
	CHS	SubName- Full=Chalcone synthase (Putative uncharacterized protein);; The primary product of thi [...] (397 aa)							•		0.683
	F3H4	flavanone 3-hydroxylase (240 aa)							•		0.681
	F3H7	flavanone 3-hydroxylase (100 aa)							•		0.681
	F3H3	SubName- Full=Putative uncharacterized protein; (363 aa)							•		0.681
	ANS1	anthocyanidin synthase (EC-1.14.11.19) (361 aa)							•		0.681

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
PLN02650	351	PLN02650, PLN02650, dihydroflavonol-4-reductase	0.0
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	1e-163
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	1e-145
PLN00198	338	PLN00198, PLN00198, anthocyanidin reductase; Provi	1e-115
PLN02896	353	PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase	1e-104
PLN02662	322	PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase	3e-88
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	9e-78
PLN02986	322	PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase	1e-65
PLN02989	325	PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase	2e-65
PLN02214	342	PLN02214, PLN02214, cinnamoyl-CoA reductase	1e-64
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	3e-44
PLN02583	297	PLN02583, PLN02583, cinnamoyl-CoA reductase	1e-41
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	1e-33
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	8e-33
PLN02686	367	PLN02686, PLN02686, cinnamoyl-CoA reductase	1e-30
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	2e-28
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	3e-25
cd08946	200	cd08946, SDR_e, extended (e) SDRs	2e-20
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	1e-18
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	2e-16
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	2e-14
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	5e-14
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	7e-14
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	2e-13
cd05242	296	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8	4e-13
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	7e-13
cd05244	207	cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu	8e-12
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	1e-11
cd05271	273	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub	1e-11
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	5e-11
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	6e-11
cd05230	305	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase	1e-10
TIGR04180	297	TIGR04180, EDH_00030, NAD dependent epimerase/dehy	2e-10
cd05273	328	cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-	3e-10
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	2e-09
cd05251	242	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional	3e-09
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	5e-09
cd05238	305	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n	6e-09
TIGR01777	291	TIGR01777, yfcH, TIGR01777 family protein	6e-09
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	2e-07
cd08957	307	cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic	3e-07
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	3e-07
cd05269	272	cd05269, TMR_SDR_a, triphenylmethane reductase (TM	9e-07
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	2e-06
cd05231	259	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript	3e-06
PLN02427	386	PLN02427, PLN02427, UDP-apiose/xylose synthase	3e-06
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	4e-06
COG1090	297	COG1090, COG1090, Predicted nucleoside-diphosphate	5e-06
cd05240	306	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase	5e-06
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	6e-06
cd05252	336	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata	6e-06
cd09812	339	cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid	1e-05
cd05265	250	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	2e-05
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	3e-05
PLN02695	370	PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase	3e-05
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	4e-05
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	5e-05
pfam05368	232	pfam05368, NmrA, NmrA-like family	5e-05
cd05229	302	cd05229, SDR_a3, atypical (a) SDRs, subgroup 3	7e-05
PLN02240	352	PLN02240, PLN02240, UDP-glucose 4-epimerase	8e-05
cd05239	300	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte	1e-04
cd05260	316	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase	1e-04
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	1e-04
COG2910	211	COG2910, COG2910, Putative NADH-flavin reductase [	1e-04
pfam00106	167	pfam00106, adh_short, short chain dehydrogenase	2e-04
cd05246	315	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra	3e-04
cd05235	290	cd05235, SDR_e1, extended (e) SDRs, subgroup 1	3e-04
cd05266	251	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	4e-04
cd05374	248	cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster	0.001
PRK08177	225	PRK08177, PRK08177, short chain dehydrogenase; Pro	0.001
smart00822	180	smart00822, PKS_KR, This enzymatic domain is part	0.002
PRK05865	854	PRK05865, PRK05865, hypothetical protein; Provisio	0.003
pfam13597	542	pfam13597, NRDD, Anaerobic ribonucleoside-triphosp	0.003
PRK08264	238	PRK08264, PRK08264, short chain dehydrogenase; Val	0.004
PLN02725	306	PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-	0.004

>gnl|CDD|178256 PLN02650, PLN02650, dihydroflavonol-4-reductase

 Score =  664 bits (1716), Expect = 0.0
 Identities = 259/327 (79%), Positives = 294/327 (89%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS  ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LP A+T LTL
Sbjct: 1   MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA EG+FD+ IRGCTGVFH+ATPMDFESKDPENEVI+PT+NGM+SIM+AC  AKTV
Sbjct: 61  WKADLAVEGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RR+VFTSSAGT++VEEH+KPVYDE  WSDLDF R  KMTGWMYFVSKTLAE+AAWK+A E
Sbjct: 121 RRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           N +DFISIIP+LVVGPF+++SMPPSLITALS IT NEAHY IIKQGQFVHLDDLC+AHIF
Sbjct: 181 NGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNAHIF 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFEHP A+GRYICSSH ATI +LAK LREKYPE+N+P  F  +DE++K++ FSSKKLTDL
Sbjct: 241 LFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPL 327
           GF FKYSL+DMF GA++TCR KGL+PL
Sbjct: 301 GFTFKYSLEDMFDGAIETCREKGLIPL 327

Length = 351

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score =  456 bits (1176), Expect = e-163
 Identities = 160/297 (53%), Positives = 204/297 (68%), Gaps = 6/297 (2%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           VCVTGASGFIGSWL+ RLL+RGY VRATVRDP ++KKV HLLEL  A   L L+KADL +
Sbjct: 1   VCVTGASGFIGSWLVKRLLQRGYTVRATVRDPGDEKKVAHLLELEGAKERLKLFKADLLD 60

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
            G+FD  I GC GVFH+A+P+DF+S+DPE E+I P + G ++++ AC  AK+V+R+VFTS
Sbjct: 61  YGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVFTS 120

Query: 128 SAGTL--DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
           S   +  +       V DE+ WSDLDF    K T   Y +SKTLAE+AAW+FAEEN +D 
Sbjct: 121 SVAAVVWNPNRGEGKVVDESCWSDLDF---CKKTKLWYALSKTLAEKAAWEFAEENGLDL 177

Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP 245
           +++ PSLVVGPFL  S+  S    LS +  N   Y        VH+DD+  AHI L+E P
Sbjct: 178 VTVNPSLVVGPFLQPSLNSSSQLILSLLKGNAEMYQ-NGSLALVHVDDVADAHILLYEKP 236

Query: 246 NAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGF 302
           +A GRYICSSH  T  ELA  L +KYP++N+PT+FED    +  +  SSKKL DLGF
Sbjct: 237 SASGRYICSSHVVTRPELAALLAKKYPQYNIPTKFEDDQPGVARVKLSSKKLKDLGF 293

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score =  410 bits (1056), Expect = e-145
 Identities = 145/298 (48%), Positives = 190/298 (63%), Gaps = 8/298 (2%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V VTGASGF+ S ++ +LLERGY VRATVRDP   KKV HLL+L      L L  ADL +
Sbjct: 1   VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELAVADLTD 60

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
           E +FDE I+GC GVFH+ATP+ F SKDP NEVI+P I G ++ ++A   AK+V+R V TS
Sbjct: 61  EQSFDEVIKGCAGVFHVATPVSFSSKDP-NEVIKPAIGGTLNALKAAAAAKSVKRFVLTS 119

Query: 128 SAGTLDVEE--HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
           SAG++ + +      V DE SW+  +F    K + W+Y  SKTLAE+AAWKFA+ENNID 
Sbjct: 120 SAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFADENNIDL 179

Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK---QGQFVHLDDLCSAHIFLF 242
           I++IP+L +G    S  P S   A+S IT NE   P +     G +VH+ D+C AHI   
Sbjct: 180 ITVIPTLTIGTIFDSETPSSSGWAMSLITGNEGVSPALALIPPGYYVHVVDICLAHIGCL 239

Query: 243 EHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           E P A+GRYIC++       L K LR+KYP +  PT+F   D+      FSS KL ++
Sbjct: 240 ELPIARGRYICTAGNFDWNTLLKTLRKKYPSYTFPTDFP--DQGQDLSKFSSAKLLEI 295

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|215100 PLN00198, PLN00198, anthocyanidin reductase; Provisional

 Score =  338 bits (867), Expect = e-115
 Identities = 152/330 (46%), Positives = 222/330 (67%), Gaps = 11/330 (3%)

Query: 5   AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
            +T CV G +GF+ S LI  LL++GYAV  TVRDP+N+KK+ HL  L +    L ++ AD
Sbjct: 9   KKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGD-LKIFGAD 67

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           L +E +F+ PI GC  VFH+ATP++F S+DPEN++I+P I G+ ++++AC  AK+V+R++
Sbjct: 68  LTDEESFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVI 127

Query: 125 FTSSAGTLDVEEHRKP--VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
            TSSA  + + +      V +E +W+D++F+ S K   W Y  SKTLAE+AAWKFAEENN
Sbjct: 128 LTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEENN 187

Query: 183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ-------FVHLDDLC 235
           ID I++IP+L+ GP LTS +P SL  A+S IT NE     +K  Q         H++D+C
Sbjct: 188 IDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVC 247

Query: 236 SAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSK 295
            AHIFL E  +A GRYIC +   ++ ELAKFL ++YP++ VPT+F D     K ++ SS+
Sbjct: 248 RAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPTDFGDFPSKAK-LIISSE 306

Query: 296 KLTDLGFKFKYSLDDMFTGAVDTCRAKGLL 325
           KL   GF F+Y +++++   V+  +AKGLL
Sbjct: 307 KLISEGFSFEYGIEEIYDQTVEYFKAKGLL 336

Length = 338

>gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase

 Score =  309 bits (793), Expect = e-104
 Identities = 147/339 (43%), Positives = 207/339 (61%), Gaps = 21/339 (6%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           T CVTGA+G+IGSWL+  LL+RGY V AT+RDP    K  HLL   K    L L++ADL 
Sbjct: 12  TYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPA---KSLHLLSKWKEGDRLRLFRADLQ 68

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFE-SKDPEN-------EVIRPTINGMVSIMRACKNAK 118
           EEG+FDE ++GC GVFH+A  M+F+ S D  N       +VI P I G ++++++C  +K
Sbjct: 69  EEGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK 128

Query: 119 TVRRLVFTSSAGTL---DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAW 175
           TV+R+VFTSS  TL   D     + V DET  + +D V + K +GW+Y +SK L E+AA+
Sbjct: 129 TVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAF 188

Query: 176 KFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII-----KQGQ--F 228
           K+A+EN ID +S+I + V GPFLT S+P S+   LSPIT +   + I+     + G    
Sbjct: 189 KYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMGSIAL 248

Query: 229 VHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMK 288
           VH++D+C AHIFL E   A+GRYIC      + EL   L ++YP  N+    ++      
Sbjct: 249 VHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSI 308

Query: 289 NMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLPL 327
               SSKKL DLGF++KY ++++    +D C   G LP 
Sbjct: 309 PSEISSKKLRDLGFEYKYGIEEIIDQTIDCCVDHGFLPQ 347

Length = 353

>gnl|CDD|178268 PLN02662, PLN02662, cinnamyl-alcohol dehydrogenase family protein

 Score =  267 bits (684), Expect = 3e-88
 Identities = 132/324 (40%), Positives = 187/324 (57%), Gaps = 13/324 (4%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            VCVTGASG+I SWL+  LL+RGY V+ATVRDP++ KK +HLL L  A   L L+KA+L 
Sbjct: 6   VVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLL 65

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           EEG+FD  + GC GVFH A+P   +  DP+ E+I P + G ++++R+C    +V+R+V T
Sbjct: 66  EEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVT 125

Query: 127 SSAGTLDVEEHRKP-----VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN 181
           SS     V  + KP     V DET +SD  F    K+  W Y +SKTLAE+AAWKFA+EN
Sbjct: 126 SSMAA--VAYNGKPLTPDVVVDETWFSDPAFCEESKL--W-YVLSKTLAEEAAWKFAKEN 180

Query: 182 NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFL 241
            ID ++I P++V+GP L  ++  S    L+ I   +  +P      +V + D+ +AHI  
Sbjct: 181 GIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT-FPNASYR-WVDVRDVANAHIQA 238

Query: 242 FEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLG 301
           FE P+A GRY          E+ K L E YP   +P +  D    +     S +K   LG
Sbjct: 239 FEIPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKSLG 298

Query: 302 FKFKYSLDDMFTGAVDTCRAKGLL 325
            +F   L+      V++ + KG L
Sbjct: 299 IEF-IPLEVSLKDTVESLKEKGFL 321

Length = 322

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score =  239 bits (613), Expect = 9e-78
 Identities = 100/301 (33%), Positives = 151/301 (50%), Gaps = 9/301 (2%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL- 65
            V VTGA+GFI S ++ +LL+ GY VR TVR      K+K LL+    +  L     D  
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVIVDDL 60

Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
                +DE ++G   V H+A+P  F   D E++VI P + G ++++ A K A +V+R+V 
Sbjct: 61  TAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSVKRVVL 120

Query: 126 TSS-AGTLDVE-EHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN- 182
           TSS A   D   E    V+ E  W+DL   +S  +    Y  SKTLAE+AAW+F +EN  
Sbjct: 121 TSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDA--YIASKTLAEKAAWEFVKENKP 178

Query: 183 -IDFISIIPSLVVGP-FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
             + I+I P  V+GP  L   +  S       +       P      +V + D+  AH+ 
Sbjct: 179 KFELITINPGYVLGPSLLADELNSSNELINKLLDGKLPAIPPNLPFGYVDVRDVADAHVR 238

Query: 241 LFEHPNAKG-RYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTD 299
             E P A G R+I S+ P +  E+A  LRE++P+   P    +       + F ++K  +
Sbjct: 239 ALESPEAAGQRFIVSAGPFSFQEIADLLREEFPQLTAPFPAPNPLMLSILVKFDNRKSEE 298

Query: 300 L 300
           L
Sbjct: 299 L 299

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein

 Score =  209 bits (533), Expect = 1e-65
 Identities = 123/334 (36%), Positives = 180/334 (53%), Gaps = 29/334 (8%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           M    + VCVTGASG+I SW++  LL RGY V+ATVRD  ++KK +HLL L  A   L L
Sbjct: 1   MNGGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           +KADL EE +F++ I GC  VFH A+P+ F  KDP+ E+I P + G ++++  CK   +V
Sbjct: 61  FKADLLEESSFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSV 120

Query: 121 RRLVFTSSAGTLDVEEHRKP------VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAA 174
           +R++ TSS   +     R+P      V DET +SD    R  K   W Y +SK LAE AA
Sbjct: 121 KRVILTSSTAAV---LFRQPPIEANDVVDETFFSDPSLCRETK--NW-YPLSKILAENAA 174

Query: 175 WKFAEENNIDFISIIPSLVVGPFLTSSMPPSL------ITALSPITRNEAHYPIIKQGQF 228
           W+FA++N ID + + P  + GP L  ++  S+      I   +    N   Y      +F
Sbjct: 175 WEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLF--NNRFY------RF 226

Query: 229 VHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMK 288
           V + D+  AHI   E P+A GRYI      ++ ++   LRE +P+  +    E+ + N  
Sbjct: 227 VDVRDVALAHIKALETPSANGRYIIDGPIMSVNDIIDILRELFPDLCIADTNEESEMNEM 286

Query: 289 NMLFSSKKLTDLGFKF---KYSLDDMFTGAVDTC 319
                 +K+ +LG +F   K SL D      + C
Sbjct: 287 ICKVCVEKVKNLGVEFTPMKSSLRDTILSLKEKC 320

Length = 322

>gnl|CDD|178569 PLN02989, PLN02989, cinnamyl-alcohol dehydrogenase family protein

 Score =  209 bits (532), Expect = 2e-65
 Identities = 120/295 (40%), Positives = 168/295 (56%), Gaps = 21/295 (7%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           M    + VCVTGASG+I SW++  LL RGY + ATVRDP ++KK  HLL L  A   L L
Sbjct: 1   MADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKT 119
           +KADL +EG+F+  I GC  VFH A+P+      DP+ E+I P +NG ++++R C    +
Sbjct: 61  FKADLLDEGSFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSS 120

Query: 120 VRRLVFTSS-AGTLDVEEHRKP--VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWK 176
           V+R++ TSS A  L  E    P  V DET +++  F    K   W Y +SKTLAE AAW+
Sbjct: 121 VKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ--W-YVLSKTLAEDAAWR 177

Query: 177 FAEENNIDFISIIPSLVVGPFLTSSMPPS------LITALSPITRNEAHYPIIKQGQFVH 230
           FA++N ID I + P LV GP L  ++  S      L+   +P   N  H+      +FV 
Sbjct: 178 FAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPF--NTTHH------RFVD 229

Query: 231 LDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDE 285
           + D+  AH+   E P+A GRYI      TI ++   LRE +P+  +    ED+ E
Sbjct: 230 VRDVALAHVKALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITE 284

Length = 325

>gnl|CDD|177862 PLN02214, PLN02214, cinnamoyl-CoA reductase

 Score =  207 bits (528), Expect = 1e-64
 Identities = 123/312 (39%), Positives = 184/312 (58%), Gaps = 16/312 (5%)

Query: 5   AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
            +TVCVTGA G+I SW++  LLERGY V+ TVR+PD+ K   HL EL      L L KAD
Sbjct: 10  GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNT-HLRELEGGKERLILCKAD 68

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           L +       I GC GVFH A+P+   + DPE +++ P +NG   ++ A   AK V+R+V
Sbjct: 69  LQDYEALKAAIDGCDGVFHTASPV---TDDPE-QMVEPAVNGAKFVINAAAEAK-VKRVV 123

Query: 125 FTSSAGTLDVEEHRKP--VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
            TSS G + ++ +R P  V DE+ WSDLDF ++ K   W Y   K +AEQAAW+ A+E  
Sbjct: 124 ITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTK--NW-YCYGKMVAEQAAWETAKEKG 180

Query: 183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLF 242
           +D + + P LV+GP L  ++  SL   L  +T +   Y  + Q  +V + D+  AH+ ++
Sbjct: 181 VDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYANLTQA-YVDVRDVALAHVLVY 239

Query: 243 EHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFED-VDENMKNMLFSSKKLTDLG 301
           E P+A GRY+ +       E+ + L + +PE+ +PT+ +D  +   K   F+++K+ DLG
Sbjct: 240 EAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLG 299

Query: 302 FKF---KYSLDD 310
            +F   K SL D
Sbjct: 300 LEFTSTKQSLYD 311

Length = 342

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score =  153 bits (389), Expect = 3e-44
 Identities = 79/327 (24%), Positives = 128/327 (39%), Gaps = 32/327 (9%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
           VTG +GFIGS L+ RLL  G+ VR   R  D    +   +E             DL +  
Sbjct: 5   VTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFV---------VLDLTDRD 55

Query: 70  NFDEPIRGC-TGVFHLATPMDFESKDPEN--EVIRPTINGMVSIMRACKNAKTVRRLVFT 126
             DE  +G    V HLA        +  +  E +   ++G ++++ A + A  V+R VF 
Sbjct: 56  LVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFA 114

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SS   +  +    P+ DE                  Y VSK  AEQ    +A    +  +
Sbjct: 115 SSVSVVYGDPPPLPI-DEDL--------GPPRPLNPYGVSKLAAEQLLRAYARLYGLPVV 165

Query: 187 SIIPSLVVGPFLTSSMPPSLITAL-SPITRNEAHYPIIKQG----QFVHLDDLCSAHIFL 241
            + P  V GP     +   +++A    + + E    I   G     FV++DD+  A +  
Sbjct: 166 ILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLA 225

Query: 242 FEHPNAKGRYICSSH-PATILELAKFLREKYPEFNVPTEFED---VDENMKNMLFS-SKK 296
            E+P+     I S     T+ ELA+ + E          +       +  +  L   SK 
Sbjct: 226 LENPDGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKA 285

Query: 297 LTDLGFKFKYSLDDMFTGAVDTCRAKG 323
              LG++ K SL++     ++    K 
Sbjct: 286 RAALGWEPKVSLEEGLADTLEWLLKKL 312

Length = 314

>gnl|CDD|178195 PLN02583, PLN02583, cinnamoyl-CoA reductase

 Score =  146 bits (370), Expect = 1e-41
 Identities = 91/314 (28%), Positives = 142/314 (45%), Gaps = 49/314 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           +VCV  ASG++G WL+ RLL RGY V A V+     +  K +  L      L ++  D  
Sbjct: 8   SVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPL 67

Query: 67  EEGNFDEPIRGCTGVFH-LATPMDFESKDPENEV---IRPTINGMVSIMRACKNAKTVRR 122
           +  +  + ++GC+G+F     P D+ S D E  V   +R   N    ++ AC    T+ +
Sbjct: 68  DYHSILDALKGCSGLFCCFDPPSDYPSYD-EKMVDVEVRAAHN----VLEACAQTDTIEK 122

Query: 123 LVFTSSAGTLDVEEHRK---PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
           +VFTSS   +   +         DE SWSD +F R  K+  W + ++KTL+E+ AW  A 
Sbjct: 123 VVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKL--W-HALAKTLSEKTAWALAM 179

Query: 180 ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ---------FVH 230
           +  ++ +SI   L++GP LT                   H P +K             V 
Sbjct: 180 DRGVNMVSINAGLLMGPSLT------------------QHNPYLKGAAQMYENGVLVTVD 221

Query: 231 LDDLCSAHIFLFEHPNAKGRYICSSH----PATILELAKFLREKYPEFNVPTEFEDVDEN 286
           ++ L  AHI  FE  ++ GRY+C +H        ++LA+ L    P    P  +E     
Sbjct: 222 VNFLVDAHIRAFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLS---PLIPSPPPYEMQGSE 278

Query: 287 MKNMLFSSKKLTDL 300
           +      +KKL  L
Sbjct: 279 VYQQRIRNKKLNKL 292

Length = 297

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score =  125 bits (317), Expect = 1e-33
 Identities = 80/286 (27%), Positives = 114/286 (39%), Gaps = 53/286 (18%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
           VTGA+GF+GS L+  LL +GY VRA VR          L  LP     + + + DL +  
Sbjct: 3   VTGATGFLGSNLVRALLAQGYRVRALVRSGS---DAVLLDGLP-----VEVVEGDLTDAA 54

Query: 70  NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA 129
           +    ++GC  VFHLA      +KD   E+ R  + G  +++ A   A  VRR+V TSS 
Sbjct: 55  SLAAAMKGCDRVFHLAAFTSLWAKDR-KELYRTNVEGTRNVLDAALEAG-VRRVVHTSSI 112

Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISII 189
             L          DET+  +     +       Y+ SK LAE    + A E  +D + + 
Sbjct: 113 AALGGPPDG--RIDETTPWNERPFPND------YYRSKLLAELEVLEAAAE-GLDVVIVN 163

Query: 190 PSLVVGP--------------FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLC 235
           PS V GP              +L   +P       S                FV + D+ 
Sbjct: 164 PSAVFGPGDEGPTSTGLDVLDYLNGKLPAYPPGGTS----------------FVDVRDVA 207

Query: 236 SAHIFLFEHPNAKGRYICSSHPATILELAKFLRE----KYPEFNVP 277
             HI   E      RYI      +  +L + L E    K P   +P
Sbjct: 208 EGHIAAMEKGRRGERYILGGENLSFKQLFETLAEITGVKPPRRTIP 253

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score =  123 bits (312), Expect = 8e-33
 Identities = 81/260 (31%), Positives = 119/260 (45%), Gaps = 47/260 (18%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V VTGA+GF+GS ++  LLE+G  VR  VR   +++ ++ L         + + + DL 
Sbjct: 2   KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGL--------DVEIVEGDLR 53

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +  +  + + GC  +FH+A      + DPE E+    + G  +++RA   A  V R+V+T
Sbjct: 54  DPASLRKAVAGCRALFHVAADYRLWAPDPE-EMYAANVEGTRNLLRAALEAG-VERVVYT 111

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SS  TL V     P  DET+ S LD      M G  Y  SK LAEQAA + A E  +  +
Sbjct: 112 SSVATLGVRGDGTPA-DETTPSSLD-----DMIG-HYKRSKFLAEQAALEMAAEKGLPVV 164

Query: 187 SIIPSLVVGP--------------FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLD 232
            + PS  +GP              FL   MP  + T L+                 VH+D
Sbjct: 165 IVNPSTPIGPRDIKPTPTGRIIVDFLNGKMPAYVDTGLN----------------LVHVD 208

Query: 233 DLCSAHIFLFEHPNAKGRYI 252
           D+   H+   E      RYI
Sbjct: 209 DVAEGHLLALERGRIGERYI 228

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|215370 PLN02686, PLN02686, cinnamoyl-CoA reductase

 Score =  118 bits (298), Expect = 1e-30
 Identities = 93/325 (28%), Positives = 140/325 (43%), Gaps = 53/325 (16%)

Query: 5   AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLL---ELPKASTHLTLW 61
           A  VCVTG   F+G  ++ RLL  GY+VR  V   ++K+K++ +    E+ +++  +   
Sbjct: 53  ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTV 112

Query: 62  KADLAEEGNFDEPIRGCTGVFHLATPMD-------------FESKDPENEVIRPTINGMV 108
            A+L E  +  E   GC GVFH +  +D              E+K  EN           
Sbjct: 113 MANLTEPESLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASEN----------- 161

Query: 109 SIMRACKNAKTVRRLVFTSSAGTL----DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF 164
            ++ AC   ++VR+ VFTSS        +      PV DE SWSD  F R  K+  W Y 
Sbjct: 162 -VIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESFCRDNKL--W-YA 217

Query: 165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK 224
           + K  AE+AAW+ A    +   +I P+LV GP        + I  L      +    ++ 
Sbjct: 218 LGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIAYL------KGAQEMLA 271

Query: 225 QGQFVHLD--DLCSAHIFLFEHPNAK---GRYICSSHPATIL----ELAKFLREKYPEFN 275
            G     D   L  AH+ ++E    K   GRYIC  H   ++    E  +  R+     N
Sbjct: 272 DGLLATADVERLAEAHVCVYEAMGNKTAFGRYICFDH---VVSREDEAEELARQIGLPIN 328

Query: 276 VPTEFEDVDENMKNMLFSSKKLTDL 300
                   D+       S+KKL+ L
Sbjct: 329 KIAGNSSSDDTPARFELSNKKLSRL 353

Length = 367

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score =  109 bits (275), Expect = 2e-28
 Identities = 61/253 (24%), Positives = 98/253 (38%), Gaps = 32/253 (12%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + VTG +GFIGS L+ RLL+ GY V    R   ++            +  +   + DL +
Sbjct: 1   ILVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSE---------SLNTGRIRFHEGDLTD 51

Query: 68  EGNFDEPIRGC--TGVFHLAT-PMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
               +  +       V HLA       S +   + IR  + G + ++ A + A  V+R V
Sbjct: 52  PDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAG-VKRFV 110

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
           F SS+      +   P   E +        S       Y  +K  AE+    +A    + 
Sbjct: 111 FASSSEVYG--DVADPPITEDT---PLGPLSP------YAAAKLAAERLVEAYARAYGLR 159

Query: 185 FISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG------QFVHLDDLCSAH 238
            + +    V GP         +I AL  I R     PI+  G       F+++DD+  A 
Sbjct: 160 AVILRLFNVYGPGNPDPFVTHVIPAL--IRRILEGKPILLLGDGTQRRDFLYVDDVARAI 217

Query: 239 IFLFEHPNAKGRY 251
           +   EHP+    Y
Sbjct: 218 LLALEHPDGGEIY 230

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score =  102 bits (257), Expect = 3e-25
 Identities = 65/293 (22%), Positives = 107/293 (36%), Gaps = 40/293 (13%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
           VTG +GF+G  L+ RLLE G+ V   VR     +  + + E    +  + + + DL +  
Sbjct: 3   VTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQPN 62

Query: 70  ------NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
                    E       V H A   DF++  P  +  R  I+G   ++         +R 
Sbjct: 63  LGLSAAASRELAGKVDHVIHCAASYDFQA--PNEDAWRTNIDGTEHVLELAARLDI-QRF 119

Query: 124 VFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
            + S+A      E           ++L+  +        Y  SK  AEQ     A +  I
Sbjct: 120 HYVSTAYVAGNRE------GNIRETELNPGQ--NFKNP-YEQSKAEAEQLVRAAATQ--I 168

Query: 184 DFISIIPSLVVGPFLTSSM-----PPSLITALS------PITRNEAHYPIIKQGQFVHLD 232
                 PS+VVG   T  +        L+  L+      P+  N+           V +D
Sbjct: 169 PLTVYRPSIVVGDSKTGRIEKIDGLYELLNLLAKLGRWLPMPGNKGAR-----LNLVPVD 223

Query: 233 DLCSAHIFLFEHPNAKGR--YICSSHPATILELAKFL--REKYPEFNVPTEFE 281
            +  A ++L + P A G+  ++    P T+ E+A         P   V    E
Sbjct: 224 YVADAIVYLSKKPEANGQIFHLTDPTPQTLREIADLFKSAFLSPGLLVLLMNE 276

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 87.0 bits (216), Expect = 2e-20
 Identities = 57/251 (22%), Positives = 85/251 (33%), Gaps = 64/251 (25%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + VTG +GFIGS L+ RLLERG+ V    R                              
Sbjct: 1   ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31

Query: 68  EGNFDEPIRGCTGVFHLA-TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
                        V HLA       S D  +E     + G ++++ A + A  V+R V+ 
Sbjct: 32  -----------DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAG-VKRFVYA 79

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SSA           VY        +   +       Y VSK  AE     + E   +  +
Sbjct: 80  SSAS----------VYGSPEG-LPEEEETPPRPLSPYGVSKLAAEHLLRSYGESYGLPVV 128

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAH---YPIIKQGQ----FVHLDDLCSAHI 239
            +  + V GP       P L   ++   R         +   G     F+H+DD+  A +
Sbjct: 129 ILRLANVYGPGQR----PRLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDVVRAIL 184

Query: 240 FLFEHPNAKGR 250
              E+P   G 
Sbjct: 185 HALENPLEGGG 195

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 74/323 (22%), Positives = 113/323 (34%), Gaps = 38/323 (11%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V VTGA GFIGS L  RLL  G+ VRA              L              D+ 
Sbjct: 1   NVLVTGADGFIGSHLTERLLREGHEVRALD---IYNSFNSWGLLDNAVHDRFHFISGDVR 57

Query: 67  EEGNFDEPIRGCTGVFHLATPM--DFESKDPENEVIRPTINGMVS-IMRACKNAKTVRRL 123
           +    +  ++ C  VFHLA  +   +    P    +   + G ++ +  AC      +R+
Sbjct: 58  DASEVEYLVKKCDVVFHLAALIAIPYSYTAPL-SYVETNVFGTLNVLEAACV--LYRKRV 114

Query: 124 VFTSSAGTLDVEEHRKPVY-DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           V TS   T +V    + V  DE        +  +      Y  SK  A++ A+ +     
Sbjct: 115 VHTS---TSEVYGTAQDVPIDED-----HPLLYINKPRSPYSASKQGADRLAYSYGRSFG 166

Query: 183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ------FVHLDDLCS 236
           +    I P    GP    S    + T +S     +    +I  G       F  + D   
Sbjct: 167 LPVTIIRPFNTYGP--RQSARAVIPTIISQRAIGQ---RLINLGDGSPTRDFNFVKDTAR 221

Query: 237 AHIFLFEHPNAKGRYI--CSSHPATILELAKFLREKYPEFNVPTEFEDV-------DENM 287
             I + +   A G  I   S    +I   A  L  +     V   ++D         E  
Sbjct: 222 GFIDILDAIEAVGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDDHREYRPGYSEVE 281

Query: 288 KNMLFSSKKLTDLGFKFKYSLDD 310
           + +    K    LG++ KYSL D
Sbjct: 282 RRIPDIRKAKRLLGWEPKYSLRD 304

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 74/323 (22%), Positives = 126/323 (39%), Gaps = 49/323 (15%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN----KKKVKHLLELPKASTHLTLWKA 63
           V VTG +GFIGS L+ RLLERG+ V       DN    KK+      LP+   ++   + 
Sbjct: 2   VLVTGGAGFIGSHLVERLLERGHEVIVL----DNLSTGKKE-----NLPEVKPNVKFIEG 52

Query: 64  DLAEEGNFDEPIRGCTGVFHLATPMDFES--KDPE--NEVIRPTINGMVSIMRACKNAKT 119
           D+ ++   +    G   VFH A         +DP   +EV    + G ++++ A + A  
Sbjct: 53  DIRDDELVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEV---NVLGTLNLLEAARKAG- 108

Query: 120 VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM---YFVSKTLAEQAAWK 176
           V+R V+ SS+          P  DE                     Y VSK   E     
Sbjct: 109 VKRFVYASSSSVYGDPP-YLPK-DED------------HPPNPLSPYAVSKYAGELYCQV 154

Query: 177 FAEENNIDFISIIPSLVVGPFLTSSMPPSLITA--LSPITRNEAHYPIIKQGQ----FVH 230
           FA    +  +S+    V GP    +   + +    +    + E    I   G+    F +
Sbjct: 155 FARLYGLPTVSLRYFNVYGPRQDPNGGYAAVIPIFIERALKGEP-PTIYGDGEQTRDFTY 213

Query: 231 LDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKYPEFNVPTEFED--VDENM 287
           ++D+  A++           Y I +    ++ ELA+ +RE      +   +      +  
Sbjct: 214 VEDVVEANLLAATAGAGGEVYNIGTGKRTSVNELAELIREIL-GKELEPVYAPPRPGDVR 272

Query: 288 KNMLFSSKKLTDLGFKFKYSLDD 310
            ++   SK    LG++ K S ++
Sbjct: 273 HSLADISKAKKLLGWEPKVSFEE 295

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 69/278 (24%), Positives = 104/278 (37%), Gaps = 52/278 (18%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V VTGA+GFIG  L+ +LL RG  VR  VR+ +N +    L ELP           DL 
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRNAENAEPSVVLAELPD-----IDSFTDL- 54

Query: 67  EEGNFDEPIRGCTGVFHLAT---PMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
                     G   V HLA     M+ +  DP ++  +        + RA      V+R 
Sbjct: 55  --------FLGVDAVVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQ-GVKRF 105

Query: 124 VFTSS-----AGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFA 178
           VF SS      GT+       P  +    +  D           Y  SK  AE+A  +  
Sbjct: 106 VFLSSVKVNGEGTVG-----APFDETDPPAPQDA----------YGRSKLEAERALLELG 150

Query: 179 EENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII-----KQGQFVHLDD 233
             + ++ + + P +V GP +  +    L+  +          P+       +   V LD+
Sbjct: 151 ASDGMEVVILRPPMVYGPGVRGNF-ARLMRLID------RGLPLPPGAVKNRRSLVSLDN 203

Query: 234 LCSAHIFLFEHPNAKGR-YICS-SHPATILELAKFLRE 269
           L  A       P A    ++ S   P +  EL   +R 
Sbjct: 204 LVDAIYLCISLPKAANGTFLVSDGPPVSTAELVDEIRR 241

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 65/291 (22%), Positives = 98/291 (33%), Gaps = 37/291 (12%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V VTGA+GFIGS ++  L+  G+ V    R      K    LE   A  H    + DL +
Sbjct: 3   VFVTGATGFIGSAVVRELVAAGHEVVGLARSDAGAAK----LEAAGAQVH----RGDLED 54

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
                +       V HLA   DF++     EV R  I  +   +R      T + L++TS
Sbjct: 55  LDILRKAAAEADAVIHLAFTHDFDNFAQACEVDRRAIEALGEALRG-----TGKPLIYTS 109

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFIS 187
             G   +        DE      D       T     VS    E AA + AE      + 
Sbjct: 110 --GIWLLGPTGGQEEDE---EAPDD----PPTPAARAVS----EAAALELAERGVRASVV 156

Query: 188 IIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ----FVHLDDLCSAHIFLFE 243
            +P +V G      +P  +  A     R +     +  G+     VH DD    +    E
Sbjct: 157 RLPPVVHGRGDHGFVPMLIAIA-----REKGVSAYVGDGKNRWPAVHRDDAARLYRLALE 211

Query: 244 HPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSS 294
              A   Y   +     + +            VP      +E   +  + +
Sbjct: 212 KGKAGSVYHAVAEEG--IPVKDIAEAIGRRLGVPVVSIPAEEAAAHFGWLA 260

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 70.8 bits (174), Expect = 7e-14
 Identities = 77/314 (24%), Positives = 122/314 (38%), Gaps = 35/314 (11%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V + G +GFIGS L+  LLE G  VR   R            ELP     +   K D   
Sbjct: 2   VLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPP-------YELPLGG--VDYIKGDYEN 52

Query: 68  EGNFDEPIRGCTGVFHLA-TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
             + +  + G   V HLA T     S       I+  +   V ++ AC  A  + +++F 
Sbjct: 53  RADLESALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAG-IGKIIFA 111

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SS GT+     + P+  E+       + S       Y +SK   E+    +     +D+ 
Sbjct: 112 SSGGTVYGVPEQLPI-SES--DPTLPISS-------YGISKLAIEKYLRLYQYLYGLDYT 161

Query: 187 SIIPSLVVGPFLTSSMPPSLI-TALSPITRNEAHYPIIKQGQ----FVHLDDLCSAHIFL 241
            +  S   GP         +I  AL+ I R E    I   G+    ++++DDL  A + L
Sbjct: 162 VLRISNPYGPGQRPDGKQGVIPIALNKILRGEP-IEIWGDGESIRDYIYIDDLVEALMAL 220

Query: 242 FEHPNAKGRY-ICSSHPATILELAKFLRE----KYPEFNVPTEFEDVDENMKNMLFSSKK 296
                 +  + I S    ++ EL   + +           P    DV    K +L  S+ 
Sbjct: 221 LRSKGLEEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTPARTTDVP---KIVLDISRA 277

Query: 297 LTDLGFKFKYSLDD 310
             +LG+  K SL+D
Sbjct: 278 RAELGWSPKISLED 291

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 27/173 (15%)

Query: 10  VTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           VTG  GF+G  ++  LL  G    VR        +     LLE       +T  + D+ +
Sbjct: 2   VTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPE-----LLEDFSKLQVITYIEGDVTD 56

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
           + +    ++G   V H A  +D   K   + +++  + G  +++ AC  A  VR LV+TS
Sbjct: 57  KQDLRRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAG-VRVLVYTS 115

Query: 128 SAGTLDVEEHRKPVYD-------ETSWSDLDFVRSVKMTGWMYFVSKTLAEQA 173
           S   +    + +P+ +       E++  D             Y  SK LAE+ 
Sbjct: 116 SMEVVGPNSYGQPIVNGDETTPYESTHQD------------PYPESKALAEKL 156

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8

 Score = 68.4 bits (168), Expect = 4e-13
 Identities = 72/327 (22%), Positives = 108/327 (33%), Gaps = 67/327 (20%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + +TG +GFIG  L  RL   G+ V    R P   + +            +  W     
Sbjct: 1   KIVITGGTGFIGRALTRRLTAAGHEVVVLSRRPGKAEGLA----------EVITWDGLSL 50

Query: 67  EEGNFDEPIRGCTGVFHLA-TPMDFESKDPEN--EVIRPTINGMVSIMRACKNAKT-VRR 122
                     G   V +LA  P+        N  E++   I     ++ A  NA    + 
Sbjct: 51  GPWELP----GADAVINLAGEPIACRRWTEANKKEILSSRIESTRVLVEAIANAPAPPKV 106

Query: 123 LVFTSSAGTLDVEEHRKP-VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN 181
           L+  S+ G      H    V  E S S  DF+  V    W         E+AA   A E 
Sbjct: 107 LISASAVGYYG---HSGDEVLTENSPSGKDFLAEVCKA-W---------EKAAQP-ASEL 152

Query: 182 NIDFISIIPSLVVGP---FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAH 238
               + +   +V+GP    L   + P  +    P+         I      H+DDL    
Sbjct: 153 GTRVVILRTGVVLGPDGGALPKMLLPFRLGLGGPLGSGRQWMSWI------HIDDLVRLI 206

Query: 239 IFLFEHPNAKGRY-ICSSHPATILELAKFLREKYPEFNVPTEF------------EDVDE 285
            F  E+P+  G     + +P T  E  K L       + P               E   E
Sbjct: 207 EFAIENPDLSGPVNAVAPNPVTNAEFTKALGRA---LHRPAGLPVPAFALKLGFGEMRAE 263

Query: 286 NMKNMLFSS-----KKLTDLGFKFKYS 307
               +L        ++L D GF+F+Y 
Sbjct: 264 ----LLLKGQRVLPERLLDAGFQFRYP 286

This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 65.8 bits (161), Expect = 7e-13
 Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 24/128 (18%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
           V GA+G  G  L+  LL RG+ V A  R+P               +  +T  + DL +  
Sbjct: 3   VIGATGKTGRRLVKELLARGHQVTALSRNPS-----------KAPAPGVTPVQKDLFDLA 51

Query: 70  NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA 129
           +  E + G   V         +S             G+  ++ A   A  VRR+V  S+A
Sbjct: 52  DLAEALAGVDAVVDAFGARPDDSD------------GVKHLLDAAARAG-VRRIVVVSAA 98

Query: 130 GTLDVEEH 137
           G    E  
Sbjct: 99  GLYRDEPG 106

Length = 182

>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs

 Score = 63.4 bits (155), Expect = 8e-12
 Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 18/136 (13%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
           + GA+G  GS ++   L RG+ V A VRDP           LP     L + + D+ +  
Sbjct: 4   IIGATGRTGSAIVREALARGHEVTALVRDPAK---------LPAEHEKLKVVQGDVLDLE 54

Query: 70  NFDEPIRGCTGVFH-LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS 128
           +  E + G   V   L T  D     P       T N +VS M+A      V+RL+    
Sbjct: 55  DVKEALEGQDAVISALGTRNDL---SPTTLHSEGTRN-IVSAMKAAG----VKRLIVVGG 106

Query: 129 AGTLDVEEHRKPVYDE 144
           AG+LD       V D 
Sbjct: 107 AGSLDDRPKVTLVLDT 122

Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score = 63.0 bits (154), Expect = 1e-11
 Identities = 38/143 (26%), Positives = 56/143 (39%), Gaps = 20/143 (13%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V V GA+G +G  ++  LL+RGY VRA VRDP   +K++             +   DL 
Sbjct: 1   KVLVVGATGKVGRHVVRELLDRGYQVRALVRDPSQAEKLEAA--------GAEVVVGDLT 52

Query: 67  EEGNFDEPIRGCTGVF--HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           +  +    + G   V     +          E  V      G ++++ A K A  V+R V
Sbjct: 53  DAESLAAALEGIDAVISAAGSGGKG--GPRTE-AVDYD---GNINLIDAAKKAG-VKRFV 105

Query: 125 FTSSAGTLDVE---EHRKPVYDE 144
             SS G        E   P  D 
Sbjct: 106 LVSSIGADKPSHPLEALGPYLDA 128

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 62/280 (22%), Positives = 105/280 (37%), Gaps = 50/280 (17%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V V GA+GFIG +++ RL +RG  V    R     +++  + +L +    +   + DL 
Sbjct: 2   VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLLVMGDLGQ----VLFVEFDLR 57

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           ++ +  + + G   V +L     +E+K+   E +   + G   + +A K A  V RL+  
Sbjct: 58  DDESIRKALEGSDVVINLVG-RLYETKNFSFEDVH--VEGPERLAKAAKEAG-VERLIHI 113

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           S+ G            D  S S              Y  SK   E+A  +   E  I   
Sbjct: 114 SALGA-----------DANSPSK-------------YLRSKAEGEEAVREAFPEATI--- 146

Query: 187 SIIPSLVVGP---FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFE 243
            + PS+V G    FL             P+             Q V++ D+  A     +
Sbjct: 147 -VRPSVVFGREDRFLNRFAKLLAFLPFPPLIGGGQTKF-----QPVYVGDVAEAIARALK 200

Query: 244 HPNAKGR--YICSSHPATILELAKFLRE----KYPEFNVP 277
            P  +G+   +      T+ EL + LR     K     +P
Sbjct: 201 DPETEGKTYELVGPKVYTLAELVELLRRLGGRKRRVLPLP 240

This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 84/342 (24%), Positives = 130/342 (38%), Gaps = 73/342 (21%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKASTHLTLWK 62
           + VTG +GFIGS L+ RLLE G  V       DN     ++ ++   E           K
Sbjct: 2   ILVTGGAGFIGSHLVDRLLEEGNEVVVV----DNLSSGRRENIEPEFENKAFRFV----K 53

Query: 63  ADLAEEGNFDEPIRGCTGVFHLATPMD--FESKDPE---NEVIRPTINGMVSIMRACKNA 117
            DL +  +      G T VFHLA   D    + DP+    E +  T N ++  MR    A
Sbjct: 54  RDLLDTADKVAKKDGDT-VFHLAANPDVRLGATDPDIDLEENVLATYN-VLEAMR----A 107

Query: 118 KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW----MYFVSKTLAEQA 173
             V+R+VF SS+           VY E        + + +        +Y  SK  AE  
Sbjct: 108 NGVKRIVFASSST----------VYGEA-----KVIPTPEDYPPLPISVYGASKLAAE-- 150

Query: 174 AWKFAEENNIDFISIIPSL--VVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ---- 227
           A   A  +   F + I     +VGP  T  +    I  L    RN     ++  G+    
Sbjct: 151 ALISAYAHLFGFQAWIFRFANIVGPRSTHGVIYDFINKLK---RNPNELEVLGDGRQRKS 207

Query: 228 FVHLDDLCSAHIFLFEHPNAKGRYICSSHPATI--LELAKFLREKYPEFNVPTEFE---- 281
           ++++ D   A +  +E            +  TI   E+A+ + E   E  +   F+    
Sbjct: 208 YLYVSDCVDAMLLAWEKSTEGVNIFNLGNDDTISVNEIAEIVIE---ELGLKPRFKYSGG 264

Query: 282 ------DVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
                 DV      M    +KL  LG+K +Y+ ++     V 
Sbjct: 265 DRGWKGDV----PYMRLDIEKLKALGWKPRYNSEEAVRKTVR 302

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 21/125 (16%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V VTGA+G++G  L+ RLL+ G+ VRA VR P+  K           S  +T+ + DL +
Sbjct: 1   VLVTGATGYVGGRLVPRLLQEGHQVRALVRSPE--KLADRPW-----SERVTVVRGDLED 53

Query: 68  EGNFDEPIRGCTGVFHLATPM----DFESKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
             +    + G    ++L   M    DFE  D      R          RA + A  V+R+
Sbjct: 54  PESLRAALEGIDTAYYLVHSMGSGGDFEEAD------RRAARNFA---RAARAAG-VKRI 103

Query: 124 VFTSS 128
           ++   
Sbjct: 104 IYLGG 108

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 68/299 (22%), Positives = 125/299 (41%), Gaps = 81/299 (27%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKASTHLTL 60
           + + +TG +GF+GS L  RLLE G+ V       DN     K+ ++HL+  P    +   
Sbjct: 1   KRILITGGAGFLGSHLCDRLLEDGHEVICV----DNFFTGRKRNIEHLIGHP----NFEF 52

Query: 61  WKADLAE--EGNFDEPIRGCTGVFHLA---TPMDFESKDPENEVIRPTINGMVSIMRACK 115
            + D+ E      D+       ++HLA   +P+ ++  +P  + ++  + G ++++   K
Sbjct: 53  IRHDVTEPLYLEVDQ-------IYHLACPASPVHYQ-YNPI-KTLKTNVLGTLNMLGLAK 103

Query: 116 NAKTVRRLVFTSSA---GTLDVEEHRKPVYDETSWSDLDFV--RSVKMTGWMYFVSKTLA 170
                 R++  S++   G  D E H +P   E+ W +++ +  RS       Y   K +A
Sbjct: 104 RVGA--RVLLASTSEVYG--DPEVHPQP---ESYWGNVNPIGPRSC------YDEGKRVA 150

Query: 171 EQAAWKFAEENNIDFISII-------PSL------VVGPFLTSSMPPSLITALS--PITR 215
           E     +  ++ +D + I        P +      VV  F        ++ AL   PIT 
Sbjct: 151 ETLCMAYHRQHGVD-VRIARIFNTYGPRMHPNDGRVVSNF--------IVQALRGEPIT- 200

Query: 216 NEAHYPIIKQGQ----FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLRE 269
                 +   G     F ++ DL    I L       G   + +    TILELA+ +++
Sbjct: 201 ------VYGDGTQTRSFQYVSDLVEGLIRLMNSDYFGGPVNLGNPEEFTILELAELVKK 253

UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 83/344 (24%), Positives = 139/344 (40%), Gaps = 91/344 (26%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLEL--PKASTHLTLWKADL 65
           V VTGA GFIGS L+  L+ +GY VRA V    N       L+   P+    + +   D+
Sbjct: 1   VLVTGADGFIGSHLVEALVRQGYEVRAFVL--YNSFNSWGWLDTSPPEVKDKIEVVTGDI 58

Query: 66  AEEGNFDEPIRGCTGVFHLAT----PMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR 121
            +  +  + ++GC  VFHLA     P  + + D     +   + G +++++A ++   V 
Sbjct: 59  RDPDSVRKAMKGCDVVFHLAALIAIPYSYIAPD---SYVDTNVTGTLNVLQAARDLG-VE 114

Query: 122 RLVFTSSA---GTLDV----EEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAA 174
           ++V TS++   GT       E+H  P+  ++ +S                 SK  A+Q A
Sbjct: 115 KVVHTSTSEVYGTAQYVPIDEKH--PLQGQSPYS----------------ASKIGADQLA 156

Query: 175 WKFAEENNIDFISIIPSLVVGPFLT-------SSMPPSLIT------------ALSPITR 215
             F    N       P  ++ PF T        ++ P++IT            +LSP TR
Sbjct: 157 LSFYRSFN------TPVTIIRPFNTYGPRQSARAVIPTIITQIASGKRRIKLGSLSP-TR 209

Query: 216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYI--CSSHPATILELAKFLREKYPE 273
           +           F ++ D     I + E     G  I   S+   +I +  K + E    
Sbjct: 210 D-----------FNYVTDTVRGFIAIAESDKTVGEVINIGSNFEISIGDTVKLIAEI--- 255

Query: 274 FNVPTEFEDVDENMK------NMLFSS----KKLTDLGFKFKYS 307
                E E  +E ++        L+      K+LT  G++ KYS
Sbjct: 256 MGSEVEIETDEERLRPEKSEVERLWCDNSKIKELT--GWQPKYS 297

This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297

>gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 41/151 (27%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
           +   VTGA GFIGS L  RL   G+ VR      D K   +H+ +         +   DL
Sbjct: 1   QRALVTGAGGFIGSHLAERLKAEGHYVRGA----DWKSP-EHMTQPTDDDEFHLV---DL 52

Query: 66  AEEGNFDEPIRGCTGVFHLATPM---DFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
            E  N  +   G   VFHLA  M    +      + VI      +   M        V R
Sbjct: 53  REMENCLKATEGVDHVFHLAADMGGMGYIQS--NHAVIMYNNTLINFNMLEAARINGVER 110

Query: 123 LVFTSSAGT----LDVEEHRKPVYDETSWSD 149
            +F SSA        +E     + +E +W  
Sbjct: 111 FLFASSACVYPEFKQLETTVVRLREEDAWPA 141

This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 18/124 (14%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
           VTGA+GF+G  ++  LL RG+ VRA VR+P+              +  + +   DL +  
Sbjct: 5   VTGATGFVGGAVVRELLARGHEVRAAVRNPEA---------AAALAGGVEVVLGDLRDPK 55

Query: 70  NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT-VRRLVFTSS 128
           +     +G  GV  ++  +D        +V       +V   RA + A   V+  V  S 
Sbjct: 56  SLVAGAKGVDGVLLISGLLDGSDAFRAVQV-----TAVV---RAAEAAGAGVKHGVSLSV 107

Query: 129 AGTL 132
            G  
Sbjct: 108 LGAD 111

Length = 275

>gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 54/241 (22%), Positives = 91/241 (37%), Gaps = 54/241 (22%)

Query: 10  VTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE 68
           V GA+G  G  ++  LL+  G+ VRA  RDP +    K L     A+  + + + DL + 
Sbjct: 3   VFGATGKQGGSVVRALLKDPGFKVRALTRDP-SSPAAKAL-----AAPGVEVVQGDLDDP 56

Query: 69  GNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS 128
            + +  ++G  GVF + T       + E   I    N    ++ A K A  V+  VF SS
Sbjct: 57  ESLEAALKGVYGVFLV-TDFWEAGGEDE---IAQGKN----VVDAAKRAG-VQHFVF-SS 106

Query: 129 AGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISI 188
               DVE+    V                     +F SK   E+        + +    +
Sbjct: 107 V--PDVEKLTLAVP--------------------HFDSKAEVEEY----IRASGLPATIL 140

Query: 189 IPSL----VVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH 244
            P+      + P     M    +T + P+   +   P+I       + D+  A   +F+ 
Sbjct: 141 RPAFFMENFLTPPAPQKMEDGTLTLVLPLD-PDTKLPMI------DVADIGPAVAAIFKD 193

Query: 245 P 245
           P
Sbjct: 194 P 194

NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 20/150 (13%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + + GA+GFIG  L   LLE+G+ V   VR   N K++    + P A     + + DL +
Sbjct: 1   ILILGATGFIGRALARELLEQGHEVTLLVR---NTKRLSKEDQEPVA-----VVEGDLRD 52

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
             +  + ++G   V HLA     +++D     +  T N    ++ A K A  V+  +F S
Sbjct: 53  LDSLSDAVQGVDVVIHLAGAP-RDTRDFCEVDVEGTRN----VLEAAKEA-GVKHFIFIS 106

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVK 157
           S G          +++ET  S      +VK
Sbjct: 107 SLG------AYGDLHEETEPSPSSPYLAVK 130

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 68/329 (20%), Positives = 109/329 (33%), Gaps = 52/329 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V +TGASGF+G  L  RLL      R  + D      V    + P  +  +T    DLA
Sbjct: 2   KVLITGASGFVGQRLAERLLSDVPNERLILID-----VVSP--KAPSGAPRVTQIAGDLA 54

Query: 67  EEGNFDEPIRG-CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
                +    G    VFHLA  +   ++   +   R  ++G  +++ A +      R VF
Sbjct: 55  VPALIEALANGRPDVVFHLAAIVSGGAEADFDLGYRVNVDGTRNLLEALRKNGPKPRFVF 114

Query: 126 TSS----AGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN 181
           TSS       L       PV D T+                Y   K + E     ++   
Sbjct: 115 TSSLAVYGLPLP-----NPVTDHTALDPA----------SSYGAQKAMCELLLNDYSRRG 159

Query: 182 NIDFISII-PSLVVGP----FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
            +D  ++  P++ V P       S+   ++I    P+   EA  P+ +Q ++       +
Sbjct: 160 FVDGRTLRLPTVCVRPGRPNKAASAFASTIIRE--PLVGEEAGLPVAEQLRYWLKSVATA 217

Query: 237 AHIFLFEHPNAKGRYICSSHPATIL---------ELAKFLREKYPEFNVPTEFEDVDENM 287
                                   L         EL   +        +   FE  DE +
Sbjct: 218 VA-NFVHAAELPA-EKFGPRRDLTLPGLSVTVGEELRALIPVAGLPALMLITFEP-DEEI 274

Query: 288 KNMLFSS------KKLTDLGFKFKYSLDD 310
           K ++F         +   LGF    SL  
Sbjct: 275 KRIVFGWPTRFDATRAQSLGFVADSSLAA 303

Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 69/321 (21%), Positives = 111/321 (34%), Gaps = 57/321 (17%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + +TG +GFIG  L  RL +RG+ V    R P      K              W  + A+
Sbjct: 1   ILITGGTGFIGRALTQRLTKRGHEVTILTRSPPPGANTKWE--------GYKPWAGEDAD 52

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESK-DPENEV------IRPTINGMVSIMRACKNAKTV 120
                  + G   V +LA     + +   E +       I  T   +V  + A +    V
Sbjct: 53  S------LEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTT-RLLVEAIAAAEQKPKV 105

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWS-DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
              +  S+ G     E R   Y E       DF+  +    W         E+AA   AE
Sbjct: 106 --FISASAVGYYGPSEDR--EYTEEDSPAGDDFLAEL-CRDW---------EEAAQA-AE 150

Query: 180 ENNIDFISIIPSLVVGP---FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
           +     + +   +V+GP    L   + P  +    P+      +  I      H++DL  
Sbjct: 151 DLGTRVVLLRTGIVLGPKGGALAKMLLPFRLGLGGPLGSGRQWFSWI------HIEDLVQ 204

Query: 237 AHIFLFEHPNAKGRYICSS-HPATILELAKFLREKY--------PEFNVPTEF-EDVDEN 286
             +F  E+ +  G    ++  P    E AK L            P F +     E     
Sbjct: 205 LILFALENASVSGPVNATAPEPVRNKEFAKALARALHRPAFFPVPAFVLRALLGEMAALL 264

Query: 287 MKNMLFSSKKLTDLGFKFKYS 307
           +K      +KL + GF+F+Y 
Sbjct: 265 LKGQRVLPEKLLEAGFQFQYP 285

This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 16/128 (12%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLEL-PKASTHLTLWKADL 65
           +  V G SGF+G  L+ +LL RG     TV   D    ++   EL P +S  +     DL
Sbjct: 1   SCLVVGGSGFLGRHLVEQLLRRG---NPTVHVFD----IRPTFELDPSSSGRVQFHTGDL 53

Query: 66  AEEGNFDEPIRGCTG---VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
            +  +  E      G   VFH A+P    + D   +V    + G  +++ AC+    V++
Sbjct: 54  TDPQDL-EKAFNEKGPNVVFHTASPDHGSNDDLYYKVN---VQGTRNVIEACRKC-GVKK 108

Query: 123 LVFTSSAG 130
           LV+TSSA 
Sbjct: 109 LVYTSSAS 116

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 81/329 (24%), Positives = 133/329 (40%), Gaps = 59/329 (17%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V +TG +G IGS LI  LLERG+ V   V D     + +HL + P    +LT+ +  +A+
Sbjct: 3   VLITGGAGQIGSHLIEHLLERGHQV--VVIDNFATGRREHLPDHP----NLTVVEGSIAD 56

Query: 68  EGNFDEPIRGC--TGVFHLATPMDFESKDPEN--EVIRPTINGMVSIMRACKNAKTVRRL 123
           +   D+         V H A       KDP++  E     + G  ++++A K A  V+RL
Sbjct: 57  KALVDKLFGDFKPDAVVHTAAAY----KDPDDWYEDTLTNVVGGANVVQAAKKA-GVKRL 111

Query: 124 VFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
           ++  +A    ++  ++P+        LD  R+   +   Y +SKT  E     + E + +
Sbjct: 112 IYFQTALCYGLKPMQQPIR-------LDHPRAPPGSS--YAISKTAGEY----YLELSGV 158

Query: 184 DFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ----------FVHLDD 233
           DF++   + V GP       P+              Y  +K G+          FV + D
Sbjct: 159 DFVTFRLANVTGPRNVIGPLPTF-------------YQRLKAGKKCFVTDTRRDFVFVKD 205

Query: 234 LCSAHIFLFEHPNAKGRYICSSHPA-TILELAKFLREK-----YPEFNVPTEFEDVDENM 287
           L        +     G Y  SS    +I EL   + E       PE  V       D+  
Sbjct: 206 LARVVDKALDGIRGHGAYHFSSGEDVSIKELFDAVVEALDLPLRPE--VEVVELGPDDVP 263

Query: 288 KNMLFSSKKLTDLGFKFKYSLDDMFTGAV 316
             +L  S+   D G+K    L +  + A+
Sbjct: 264 SILLDPSRTFQDFGWKEFTPLSETVSAAL 292

Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKAS---THLTLWKADLA 66
           VTG  GF+G  +I  LLER   +   +R  D K     L+E  + S   T++T  + D+ 
Sbjct: 4   VTGGGGFLGQHIIRLLLERKEEL-KEIRVLD-KAFGPELIEHFEKSQGKTYVTDIEGDIK 61

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +        +G + V H A  +D        E+    +NG  +++ AC     V+RLV+T
Sbjct: 62  DLSFLFRACQGVSVVIHTAAIVDVFGPPNYEELEEVNVNGTQAVLEACVQN-NVKRLVYT 120

Query: 127 SS 128
           SS
Sbjct: 121 SS 122

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 20/121 (16%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
           VTGA+G +G+ ++  LL +  +V A VR+P+  K          A+  + + + D  +  
Sbjct: 3   VTGATGKLGTAVVELLLAKVASVVALVRNPEKAKA--------FAADGVEVRQGDYDDPE 54

Query: 70  NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA 129
             +    G   +  L +P D E +  +    +  I+       A K A  V+ +V+ S++
Sbjct: 55  TLERAFEGVDRLL-LISPSDLEDRIQQ---HKNFID-------AAKQAG-VKHIVYLSAS 102

Query: 130 G 130
           G
Sbjct: 103 G 103

TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 52/240 (21%), Positives = 93/240 (38%), Gaps = 31/240 (12%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKAS-THLTLWKADL 65
           +V VTG SGF G  L+ +LLERG        D            L      ++   K D+
Sbjct: 1   SVLVTGGSGFFGERLVKQLLERG-GTYVRSFD-----IAPPGEALSAWQHPNIEFLKGDI 54

Query: 66  AEEGNFDEPIRGCTGVFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
            +  + ++ + G   VFH A  +     +D   EV    + G  +++ AC+    V++ V
Sbjct: 55  TDRNDVEQALSGADCVFHTAAIVPLAGPRDLYWEV---NVGGTQNVLDACQRCG-VQKFV 110

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
           +TSS+  +   ++     +   +  LD          MY  +K +AE    +    +++ 
Sbjct: 111 YTSSSSVIFGGQNIHNGDETLPYPPLDS--------DMYAETKAIAEIIVLEANGRDDLL 162

Query: 185 FISIIPSLVVGP---FLTSSMPPSLITALSP--ITRNEAHYPIIKQGQFVHLDDLCSAHI 239
             ++ P+ + GP    L   +       L      R            F ++ +L  AHI
Sbjct: 163 TCALRPAGIFGPGDQGLVPILFEWAEKGLVKFVFGRGNNLV------DFTYVHNLAHAHI 216

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 31/129 (24%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE-- 67
           VTGA+G IGS +   LLE G  VRA VR  +            +A+       A  AE  
Sbjct: 3   VTGATGRIGSKVATTLLEAGRPVRALVRSDE------------RAAA----LAARGAEVV 46

Query: 68  EGNFDEP------IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR 121
            G+ D+P      + G   VF LA P       P  +  RP          +      V+
Sbjct: 47  VGDLDDPAVLAAALAGVDAVFFLAPP------APTAD-ARPGYVQAAEAFASALREAGVK 99

Query: 122 RLVFTSSAG 130
           R+V  SS G
Sbjct: 100 RVVNLSSVG 108

Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259

>gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 86/358 (24%), Positives = 152/358 (42%), Gaps = 66/358 (18%)

Query: 7   TVCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLEL--PKASTHLTLWKA 63
           T+C+ GA GFIGS L  +L+ E  + V A     D   K+KHLLE      S  +   + 
Sbjct: 16  TICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND---KIKHLLEPDTVPWSGRIQFHRI 72

Query: 64  DLAEEGNFDEPIRGCTGVFHLA---TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           ++  +   +  I+      +LA   TP D+ ++ P + +    I+ +  +    +N K  
Sbjct: 73  NIKHDSRLEGLIKMADLTINLAAICTPADYNTR-PLDTIYSNFIDALPVVKYCSENNK-- 129

Query: 121 RRL-------VFTSSAGTLDVEEHRKPVYDETSWSDLD------FVRSVKMTGWMYFVSK 167
            RL       V+  + G+   ++H  P+  + ++  L          S++   W Y  +K
Sbjct: 130 -RLIHFSTCEVYGKTIGSFLPKDH--PLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAK 186

Query: 168 TLAEQAAWKFAEENNIDFISIIPSLVVGPFL---------TSSMPPSLITALSPITRNEA 218
            L E+  +    EN ++F  + P   +GP +         +  +P  L    + + R E 
Sbjct: 187 QLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREP 246

Query: 219 HYPIIKQGQ----FVHLDDLCSAHIFLFEHP-NAKGRYICSSHP---ATILELAKFLREK 270
              ++  GQ    FV++ D   A + + E+P  A G      +P    T+ +LA+ + E 
Sbjct: 247 -LKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEV 305

Query: 271 Y------PEFNVPT------EF-----EDVDENMKNMLFSSKKLTDLGFKFKYSLDDM 311
           Y      P    PT      EF     +D D+ + +M   +K+   LG+  K SL D+
Sbjct: 306 YAKVSGEPALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQ---LGWNPKTSLWDL 360

Length = 386

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 20/185 (10%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYA-VRATVR---DPDNKKKVKHLLEL-----PKASTH 57
            V +TGA+GF+G++L++ LL+R  A V   VR   D     +++   +L       ++  
Sbjct: 2   NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADR 61

Query: 58  LTLWKADLAEEG------NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIM 111
           + +   DLAE         + E       + H A  ++     P +E+    + G   ++
Sbjct: 62  VEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNHVF--PYSELRGANVLGTAEVL 119

Query: 112 RACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW--MYFVSKTL 169
           R     K  + L + SS    + E +     D    S    V      G+    +V++ L
Sbjct: 120 RLAATGK-PKPLHYVSSISVGETEYYSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKL 178

Query: 170 AEQAA 174
             +A 
Sbjct: 179 VREAG 183

Length = 382

>gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 67/322 (20%), Positives = 116/322 (36%), Gaps = 60/322 (18%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKA-DLA 66
           + +TG +G IG  L  RL + G+ V    R P    +  H           TLW+    A
Sbjct: 1   ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNV--------TLWEGLADA 52

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFE---SKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
                D        V +LA     E   ++  + E+ +  IN    ++     ++T  ++
Sbjct: 53  LTLGID-------AVINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKV 105

Query: 124 VFTSSA----GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
           + ++SA    G          V  E S    DF+  +    W         E+ A + A+
Sbjct: 106 LISASAVGYYGHSGDR-----VVTEESPPGDDFLAQL-CQDW---------EEEALQ-AQ 149

Query: 180 ENNIDFISIIPSLVVGP---FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
           +     + +   +V+ P    L   +P   +     +      +  I      H++DL +
Sbjct: 150 QLGTRVVLLRTGVVLSPDGGALGKMLPLFKLGLGGKLGSGRQWFSWI------HIEDLVN 203

Query: 237 AHIFLFEHPNAKGRYICSS-HPATILELAKFLRE---KYPEFNVPTEF-------EDVDE 285
           A +FL E+    G +  ++ +P    E A  L     +     VP  F       E  D 
Sbjct: 204 AILFLLENEQLSGPFNLTAPNPVRNKEFAHALGRALHRPAILPVP-SFALRLLLGEMADL 262

Query: 286 NMKNMLFSSKKLTDLGFKFKYS 307
            +       KKL   GF+F+Y 
Sbjct: 263 LLGGQRVLPKKLEAAGFQFQYP 284

Length = 297

>gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 58/252 (23%), Positives = 86/252 (34%), Gaps = 66/252 (26%)

Query: 8   VCVTGASGFIGSWLIMRLLE----RGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKA 63
           + VTGA+G +G  L  RL       G       R P +  KV+++         L +   
Sbjct: 1   ILVTGAAGGLGRLLARRLAASPRVIGVDGLDRRRPPGSPPKVEYV--------RLDIRDP 52

Query: 64  DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTIN--GMVSIMRACKNAKTVR 121
             A+     E       V HLA  +D     P +   R  IN  G  +++ AC  A  V 
Sbjct: 53  AAADVFREREA----DAVVHLAFILDP----PRDGAERHRINVDGTQNVLDACAAAG-VP 103

Query: 122 RLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW---MYFVSKTLAEQAA---- 174
           R+V TSS            VY     +         + G     Y   K   EQ      
Sbjct: 104 RVVVTSSVA----------VYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFR 153

Query: 175 WKFAEENNIDFISII-PSLVVGP--------FLTSSMPPSLITALSPITRNEAHYPIIKQ 225
            +  E N    ++++ P+ ++GP        FL+    P       P             
Sbjct: 154 RRHPELN----VTVLRPATILGPGTRNTTRDFLSPRRLPVPGGFDPPF------------ 197

Query: 226 GQFVHLDDLCSA 237
            QF+H DD+  A
Sbjct: 198 -QFLHEDDVARA 208

Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 15/145 (10%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + VTG +G+IGS  + +LLE G+ V   + D  +    + L    +  T +T  + DL +
Sbjct: 2   ILVTGGAGYIGSHTVRQLLESGHEV--VILDNLSNGSREALPRG-ERITPVTFVEGDLRD 58

Query: 68  EGNFD-----EPIRGCTGVFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVR 121
               D       I     V H A  +   ES     +  R  + G ++++ A + A  V+
Sbjct: 59  RELLDRLFEEHKID---AVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAG-VK 114

Query: 122 RLVFTSSAGTLDVEEHRKPVYDETS 146
           + +F+SSA      E       E S
Sbjct: 115 KFIFSSSAAVYG--EPSSIPISEDS 137

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 8/126 (6%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V VTG +GF GSWL + L E G  V     DP       +L EL      ++  + D+ 
Sbjct: 6   RVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTN---PNLFELANLDNKISSTRGDIR 62

Query: 67  EEGNFDEPIRGCTG--VFHLAT-PMDFES-KDPENEVIRPTINGMVSIMRACKNAKTVRR 122
           +     E IR      VFHLA  P+   S KDP  E     + G V+++ A +   +V+ 
Sbjct: 63  DLNALREAIREYEPEIVFHLAAQPLVRLSYKDPV-ETFETNVMGTVNLLEAIRETGSVKA 121

Query: 123 LVFTSS 128
           +V  +S
Sbjct: 122 VVNVTS 127

This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336

>gnl|CDD|187672 cd09812, 3b-HSD_like_1_SDR_e, 3beta-hydroxysteroid dehydrogenase (3b-HSD)-like, subgroup1, extended (e) SDRs

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 63/274 (22%), Positives = 108/274 (39%), Gaps = 51/274 (18%)

Query: 7   TVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
           +V +TG  G+ G  L   L + G + +   +R P          ELP+    +   +AD+
Sbjct: 1   SVLITGGGGYFGFRLGCALAKSGVHVILFDIRRPQQ--------ELPEG---IKFIQADV 49

Query: 66  AEEGNFDEPIRGCTGVFHLAT-PMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
            +    ++ + G   VFH+A+  M    +     +    + G  +I++ C   + V RL+
Sbjct: 50  RDLSQLEKAVAGVDCVFHIASYGMSGREQLNRELIEEINVRGTENIIQVCVR-RRVPRLI 108

Query: 125 FTSSAGTLDVEEHRKPVYD-ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
           +TS   T +V    +P+ + + S   L     V      Y  +K++AEQ      + NN+
Sbjct: 109 YTS---TFNVIFGGQPIRNGDESLPYLPLDLHVD----HYSRTKSIAEQ---LVLKANNM 158

Query: 184 DFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP----IIKQG------------- 226
                      G   T ++ P+ I         + H P     I++G             
Sbjct: 159 PL-----PNNGGVLRTCALRPAGIYG----PGEQRHLPRIVSYIEKGLFMFVYGDPKSLV 209

Query: 227 QFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATI 260
           +FVH+D+L  AHI   E       YI S     I
Sbjct: 210 EFVHVDNLVQAHILAAEALTTAKGYIASGQAYFI 243

An uncharacterized subgroup of the 3b-HSD-like extended-SDR family. Proteins in this subgroup have the characteristic active site tetrad and NAD(P)-binding motif of extended-SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 339

>gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 60/290 (20%), Positives = 95/290 (32%), Gaps = 60/290 (20%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATV-----RDPDNKKKVKHLLELPKASTHLTLWK 62
           + + G + FIG  L+  LL  G+ V  TV       PD  + V+H+        +     
Sbjct: 3   ILIIGGTRFIGKALVEELLAAGHDV--TVFNRGRTKPDLPEGVEHI----VGDRNDRDAL 56

Query: 63  ADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
            +L    +FD        V       D  +  P    +   +        A K    V++
Sbjct: 57  EELLGGEDFD-------VVV------DTIAYTPRQ--VERAL-------DAFKG--RVKQ 92

Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
            +F SSA    V      V  E++         +    W Y   K  AE       E   
Sbjct: 93  YIFISSAS---VYLKPGRVITESTPLREPDAVGLS-DPWDYGRGKRAAEDVL---IEAAA 145

Query: 183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG------QFVHLDDLCS 236
             +  + P  + GP         L      + R     PI+  G      QF+H+ DL  
Sbjct: 146 FPYTIVRPPYIYGPGDY---TGRLAYFFDRLARGR---PILVPGDGHSLVQFIHVKDLAR 199

Query: 237 AHIFLFEHPNAKGRYICSSHPATIL--ELAKFLRE---KYPEF-NVPTEF 280
           A +    +P A G     +    +   EL +   +   K  E  +V  +F
Sbjct: 200 ALLGAAGNPKAIGGIFNITGDEAVTWDELLEACAKALGKEAEIVHVEEDF 249

Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 44/204 (21%), Positives = 75/204 (36%), Gaps = 26/204 (12%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVR--ATVRDPDNKKK--------VKHLLELP-KASTHL 58
           +TGA+GF+G  L+ +LL     V+    VR  D +          +K+ L    KA   +
Sbjct: 1   LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60

Query: 59  TLWKADLAEEG------NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMR 112
                DL+E        +F E       + H A  ++F   +P +++    + G   ++R
Sbjct: 61  IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFV--EPYSDLRATNVLGTREVLR 118

Query: 113 ACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQ 172
             K  K        S+A                   + +      +    Y  SK LAEQ
Sbjct: 119 LAKQMKK-LPFHHVSTAYVNGERGGLLEEKPYKL-DEDEPALLGGLPN-GYTQSKWLAEQ 175

Query: 173 AAWKFAEENNIDFISII-PSLVVG 195
              + A    +  + I  PS++ G
Sbjct: 176 LVREAAG--GLP-VVIYRPSIITG 196

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-LPKASTHLTLWKADLA 66
           +C+TGA GFI S +  RL   G+ + A+     + KK +H+ E +     HL     DL 
Sbjct: 24  ICITGAGGFIASHIARRLKAEGHYIIAS-----DWKKNEHMSEDMFCHEFHL----VDLR 74

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVS--IMRACKNAKTVRRLV 124
              N  +  +G   VF+LA  M        N  +    N M+S  ++ A +    V+R  
Sbjct: 75  VMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VKRFF 133

Query: 125 FTSSA 129
           + SSA
Sbjct: 134 YASSA 138

Length = 370

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 44.4 bits (106), Expect = 4e-05
 Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 32/140 (22%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V VTG +G+IGS  ++ LLE GY V   V D  +    + L  +      +  ++ D+ 
Sbjct: 1   KVLVTGGAGYIGSHTVVELLEAGYDV--VVLDNLSNGHREALPRI--EKIRIEFYEGDIR 56

Query: 67  ---------EEGNFDEPIRGCTGVFHLATPMDF-ES-KDP----ENEVIRPTINGMVSIM 111
                     E   D        V H A      ES + P    +N V+     G ++++
Sbjct: 57  DRAALDKVFAEHKID-------AVIHFAALKAVGESVQKPLKYYDNNVV-----GTLNLL 104

Query: 112 RACKNAKTVRRLVFTSSAGT 131
            A +    V+  VF+SSA  
Sbjct: 105 EAMRAHG-VKNFVFSSSAAV 123

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 21/133 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V VTG +G+IGS  + +LL+ G+ V   V D  +      LL+L         ++ DL 
Sbjct: 2   KVLVTGGAGYIGSHTVRQLLKTGHEV--VVLDNLSNGHKIALLKL-----QFKFYEGDLL 54

Query: 67  EEGNFDEPIR--GCTGVFHLATPMD-FES-KDP----ENEVIRPTINGMVSIMRACKNAK 118
           +               V H A  +   ES ++P    +N V+     G ++++ A     
Sbjct: 55  DRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVV-----GTLNLIEAMLQTG 109

Query: 119 TVRRLVFTSSAGT 131
            V++ +F+S+A  
Sbjct: 110 -VKKFIFSSTAAV 121

Length = 329

>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 8  VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
          + V GA+G+ G  ++   L+ G+ VRA VRDP   +  K L         + L + DL +
Sbjct: 1  ILVFGATGYQGGSVVRASLKAGHPVRALVRDP-KSELAKSLKAAG-----VELVEGDLDD 54

Query: 68 EGNFDEPIRGCTGVF 82
            +  E ++G   VF
Sbjct: 55 HESLVEALKGVDVVF 69

NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232

>gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           T  V GASG IG  +   L  RG+ VR   R          L  LP       +  AD  
Sbjct: 1   TAHVLGASGPIGREVARELRRRGWDVRLVSRSG------SKLAWLPGV----EIVAADAM 50

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +  +     RG   ++H A P          E + P +  M +++ A +      +LV  
Sbjct: 51  DASSVIAAARGADVIYHCANP-----AYTRWEELFPPL--MENVVAAAE--ANGAKLVLP 101

Query: 127 SS 128
            +
Sbjct: 102 GN 103

These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302

>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 32/147 (21%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DN--KKKVKHLLEL-PKAST 56
           M  +  T+ VTG +G+IGS  +++LL  GY V   V D  DN  ++ ++ + EL      
Sbjct: 1   MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKV--VVIDNLDNSSEEALRRVKELAGDLGD 58

Query: 57  HLTLWKADLAEEGNFDEPIRGCT--GVFHLA----------TPMDFESKDPENEVIRPTI 104
           +L   K DL ++   ++         V H A           P+ +     +N ++  TI
Sbjct: 59  NLVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYY----DNNLV-GTI 113

Query: 105 NGMVSIMRA--CKNAKTVRRLVFTSSA 129
           N ++ +M    CK       LVF+SSA
Sbjct: 114 N-LLEVMAKHGCKK------LVFSSSA 133

Length = 352

>gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 73/354 (20%), Positives = 121/354 (34%), Gaps = 97/354 (27%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYA--VRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
            + VTG  G +GS ++  L  RGY   V  T ++ D       L +  + +         
Sbjct: 1   KILVTGHRGLVGSAIVRVLARRGYENVVFRTSKELD-------LTD--QEAVR------A 45

Query: 65  LAEEGNFDEPIRGCTGVFHLAT-----------PMDFESKDPENEVIRPTINGMVSIMRA 113
             E+   D        V HLA            P DF     +N +I        +++ A
Sbjct: 46  FFEKEKPD-------YVIHLAAKVGGIVANMTYPADFLR---DNLLI------NDNVIHA 89

Query: 114 CKNAKTVRRLVFTSSA------GTLDVEE---HRKPVYDETSWSDLDFVRSVKMTGWMYF 164
                 V++LVF  S+          ++E      P                      Y 
Sbjct: 90  AHRFG-VKKLVFLGSSCIYPDLAPQPIDESDLLTGPPEPTNEG---------------YA 133

Query: 165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFL-----TSSMPPSLI----TALSPITR 215
           ++K    +    + ++   D+IS++P+ + GP        S + P+LI     A     R
Sbjct: 134 IAKRAGLKLCEAYRKQYGCDYISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAK---LR 190

Query: 216 NEAHYPIIKQG----QFVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREK 270
                 +   G    +F++ DDL  A +FL E+ +      + S    +I ELA+ + E 
Sbjct: 191 GGKEVTVWGSGTPRREFLYSDDLARAIVFLLENYDEPIIVNVGSGVEISIRELAEAIAEV 250

Query: 271 YPEFNVPTEFEDVDEN----MKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCR 320
              F     F   D +        L    KL  LG+     L+    G  +T  
Sbjct: 251 V-GFKGEIVF---DTSKPDGQPRKLLDVSKLRALGWFPFTPLEQ---GIRETYE 297

GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVR--DPDNKKKVKHLLELPKASTHLTLWKAD 64
             +TG +G  GS+L   LLE+GY V   VR     N  ++ HL         +TL   D
Sbjct: 1  RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDHLYINKD---RITLHYGD 57

Query: 65 LAEEGNFDEPIRGC--TGVFHLA 85
          L +  +    I       ++HLA
Sbjct: 58 LTDSSSLRRAIEKVRPDEIYHLA 80

GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 21/102 (20%)

Query: 10 VTGASGFIGSWLIMRLLE--RGYAVRATVRDPDNKKKVKHLLE---------LPKASTH- 57
          VTG +GFIG  L+ RLL+  R   V   VR   +  +++ L           L    T  
Sbjct: 5  VTGGTGFIGRRLVSRLLDRRREATVHVLVR-RQSLSRLEALAAYWGADRVVPLVGDLTEP 63

Query: 58 -LTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENE 98
           L L +AD+AE G+ D        V HLA   D  + +    
Sbjct: 64 GLGLSEADIAELGDIDH-------VVHLAAIYDLTADEEAQR 98

Length = 657

>gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 31/169 (18%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + + GASG  GS ++   L+RG+ V A VR+               A   +T+ + D+ +
Sbjct: 3   IAIIGASGKAGSRILKEALKRGHEVTAIVRNA----------SKLAARQGVTILQKDIFD 52

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPEN-EVIRPTINGMVSIMRACKNAKTVRRLVFT 126
             +    + G     H A    F +   +N E+   +I  ++  ++       V RL+  
Sbjct: 53  LTSLASDLAG-----HDAVISAFGAGASDNDELHSKSIEALIEALK----GAGVPRLLVV 103

Query: 127 SSAGTL---------DVEEHRKPVYDETSWS--DLDFVRSVKMTGWMYF 164
             AG+L         D  +       E       LD +R+ K   W + 
Sbjct: 104 GGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAEFLDSLRAEKSLDWTFV 152

Length = 211

>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 22/141 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATV-----RDPDNKKKVKHLLELPKASTHLTLW 61
           TV +TG +G +G  L   L   G A    +       P   + V    EL      +T+ 
Sbjct: 2   TVLITGGTGGLGLALARWLAAEG-ARHLVLVSRRGPAPGAAELVA---ELEALGAEVTVA 57

Query: 62  KADLAEE-------GNFDEPIRGCTGVFHLATPMD---FESKDPEN--EVIRPTINGMVS 109
             D+A+              +    GV H A  +D    E   PE    V+ P + G  +
Sbjct: 58  ACDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWN 117

Query: 110 IMRACKNAKTVRRLVFTSSAG 130
           +    ++   +   V  SS  
Sbjct: 118 LHELTRDLD-LGAFVLFSSVA 137

This family contains a wide variety of dehydrogenases. Length = 167

>gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 19/123 (15%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRD-------PDNKKKVKHLLELPKASTHLTLWK 62
           VTG +GFIGS  +  LL +    +    D        +N + V        +S      K
Sbjct: 5   VTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDV-------SSSPRYRFVK 57

Query: 63  ADLAEEGNFDEPIR--GCTGVFHLA--TPMDFESKDPENEVIRPTINGMVSIMRACKNAK 118
            D+ +    D          V H A  + +D    DPE   IR  + G  +++ A +   
Sbjct: 58  GDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPE-PFIRTNVLGTYTLLEAARKYG 116

Query: 119 TVR 121
             R
Sbjct: 117 VKR 119

This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315

>gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 41/194 (21%), Positives = 81/194 (41%), Gaps = 27/194 (13%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRAT--VRDPDNKKKVKHLLELPKA---------- 54
           TV +TGA+GF+G++L+  LL+R    +    VR  D +  ++ L++  K           
Sbjct: 1   TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60

Query: 55  STHLTLWKADLAE------EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPT-INGM 107
            + + +   DL++      + ++ E       + H    +++     E   ++P  + G 
Sbjct: 61  LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEE---LKPANVLGT 117

Query: 108 VSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK 167
             +++     K  + L F S+      EE    + DE S   L+  ++    G  Y  SK
Sbjct: 118 KELLKLAATGKL-KPLHFVSTLSVFSAEE-YNALDDEESDDMLES-QNGLPNG--YIQSK 172

Query: 168 TLAEQAAWKFAEEN 181
            +AE+   + A   
Sbjct: 173 WVAEKLLREAANRG 186

This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290

>gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 57/305 (18%), Positives = 91/305 (29%), Gaps = 78/305 (25%)

Query: 15  GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP 74
           G++G  L  +LL +G+ V  T R P+           P   T L    ADL + G     
Sbjct: 7   GYLGQRLARQLLAQGWQVTGTTRSPEKLAAD-----RPAGVTPLA---ADLTQPGLLA-- 56

Query: 75  IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDV 134
                 +     P     +   +  +R  ++       A      V+R+++ SS G    
Sbjct: 57  --DVDHLVISLPPPAGSYRGGYDPGLRALLD-------ALAQLPAVQRVIYLSSTG---- 103

Query: 135 EEHRKPVY--------DETSWSDLDFVRSVKMTGWMYFVSKTL--AEQAAWKFAEENNID 184
                 VY        DETS  +                 + L  AEQA        +  
Sbjct: 104 ------VYGDQQGEWVDETSPPNPSTES-----------GRALLEAEQA---LLALGSKP 143

Query: 185 FISIIPSLVVGP------FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAH 238
              +  + + GP       L +          +P  R             +H+DDL  A 
Sbjct: 144 TTILRLAGIYGPGRHPLRRL-AQGTGRPPAGNAPTNR-------------IHVDDLVGAL 189

Query: 239 IFLFEHPNAKGRY-ICSSHPATILELAKFLREKYPEFNVPT-EFEDVDENMKNMLFSSKK 296
            F  + P     Y +    P T  E  +   E      +P   F       +    S+ +
Sbjct: 190 AFALQRPAPGPVYNVVDDLPVTRGEFYQAAAEL---LGLPPPPFIPFAFLREGKRVSNDR 246

Query: 297 LTDLG 301
           L    
Sbjct: 247 LKAEL 251

Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251

>gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V +TG S  IG  L + L  +GY V AT R+PD   K++ L EL     +L + + D+ 
Sbjct: 2  VVLITGCSSGIGLALALALAAQGYRVIATARNPD---KLESLGELLND--NLEVLELDVT 56

Query: 67 EEGNFDEPIRGCTGVFH 83
          +E +    ++     F 
Sbjct: 57 DEESIKAAVKEVIERFG 73

17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248

>gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 5  AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN 41
            T  + GAS  +G  L+ RLLERG+ V ATVR P  
Sbjct: 1  KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQ 37

Length = 225

>gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases

 Score = 38.2 bits (90), Expect = 0.002
 Identities = 39/143 (27%), Positives = 52/143 (36%), Gaps = 20/143 (13%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATV----RDPDNKKKVKHLLELPKASTHLTLWK 62
           T  +TG  G +G  L   L ERG   R  V      PD       L EL  A   +T+  
Sbjct: 2   TYLITGGLGGLGRALARWLAERG--ARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVA 59

Query: 63  ADLAEEGNFDEPIRGC-------TGVFHLATPMD---FESKDPE--NEVIRPTINGMVSI 110
            D+A+       +          TGV H A  +D     S  PE    V+ P   G  ++
Sbjct: 60  CDVADRDALAAVLAAIPAVEGPLTGVIHAAGVLDDGVLASLTPERFAAVLAPKAAGAWNL 119

Query: 111 MRACKNAKTVRRLVFTSS-AGTL 132
                +   +   V  SS AG L
Sbjct: 120 HELTADLP-LDFFVLFSSIAGVL 141

It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180

>gnl|CDD|235630 PRK05865, PRK05865, hypothetical protein; Provisional

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 22/130 (16%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKKVKHLLELPKASTHLTLWKADLA 66
           + VTGASG +G  L  RLL +G+ V    R  PD+       +             AD+ 
Sbjct: 3   IAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIA------------ADIR 50

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +    +  + G   V H A       +   + +    I+G  ++++A     T  R+VFT
Sbjct: 51  DATAVESAMTGADVVAHCAW-----VRGRNDHI---NIDGTANVLKAMAETGT-GRIVFT 101

Query: 127 SSAGTLDVEE 136
           SS     VE+
Sbjct: 102 SSGHQPRVEQ 111

Length = 854

>gnl|CDD|222253 pfam13597, NRDD, Anaerobic ribonucleoside-triphosphate reductase

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 36/133 (27%)

Query: 150 LDFVRSV-----KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP 204
           LDF+R       + TG ++ +  T AE  A++ A+++   FI     +    + T+S   
Sbjct: 371 LDFIREKAREAQEETGNLFNLEATPAEGTAYRLAKKDKKRFI-----IQPRTYYTNSFHV 425

Query: 205 SLITALSPITRNEAHYPIIKQGQFVHLDDLCSA----HIFLFEHPNAKG----------- 249
            +   +    +      I  +G+      L +     H+FL E P+ +            
Sbjct: 426 PVDAPIDLFDK------IKIEGKL---QPLYTGGTILHLFLGESPDPEALKKLVKKAAKT 476

Query: 250 --RYICSSHPATI 260
              Y   +   +I
Sbjct: 477 GLPYFTITPTFSI 489

Length = 542

>gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPD 40
           V VTGA+  IG   + +LL RG A V A  RDP+
Sbjct: 8  VVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE 42

Length = 238

>gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 36/178 (20%)

Query: 163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGP-----FLTSSMPPSLITALSPITRNE 217
           Y ++K    +    +  +   D IS +P+ + GP        S + P+LI        N 
Sbjct: 130 YAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANG 189

Query: 218 AHYPII-KQG----QFVHLDDLCSAHIFL------FEHPNAKGRYICSSHPATILELAKF 266
           A   ++   G    +F+H+DDL  A +FL       EH N     + S    TI ELA+ 
Sbjct: 190 APEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSGAEHVN-----VGSGDEVTIKELAEL 244

Query: 267 LREKYPEFNVPTEFEDV------DENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDT 318
           ++E      V  E E V      D   +  L  S KL  LG+  K+SL D   G  +T
Sbjct: 245 VKEV-----VGFEGELVWDTSKPDGTPRK-LMDSSKLRSLGWDPKFSLKD---GLQET 293

Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
PLN02650	351	dihydroflavonol-4-reductase	100.0
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	100.0
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	100.0
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	100.0
PLN00198	338	anthocyanidin reductase; Provisional	100.0
PLN02214	342	cinnamoyl-CoA reductase	100.0
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	100.0
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	100.0
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	100.0
PLN02896	353	cinnamyl-alcohol dehydrogenase	100.0
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	100.0
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	100.0
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	100.0
PLN02166	436	dTDP-glucose 4,6-dehydratase	100.0
PLN02427	386	UDP-apiose/xylose synthase	100.0
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	100.0
PLN02206	442	UDP-glucuronate decarboxylase	100.0
PLN02695	370	GDP-D-mannose-3',5'-epimerase	100.0
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	100.0
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	100.0
PLN02572	442	UDP-sulfoquinovose synthase	100.0
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	100.0
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	100.0
PLN02653	340	GDP-mannose 4,6-dehydratase	100.0
PLN02240	352	UDP-glucose 4-epimerase	100.0
PLN02260	668	probable rhamnose biosynthetic enzyme	100.0
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	100.0
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	100.0
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	100.0
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	100.0
PRK10675	338	UDP-galactose-4-epimerase; Provisional	100.0
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	100.0
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	100.0
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	100.0
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	100.0
PLN02686	367	cinnamoyl-CoA reductase	100.0
PLN02583	297	cinnamoyl-CoA reductase	100.0
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	100.0
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	100.0
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	100.0
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	100.0
PLN00016	378	RNA-binding protein; Provisional	100.0
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	100.0
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	100.0
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	100.0
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	100.0
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	100.0
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	100.0
CHL00194	317	ycf39 Ycf39; Provisional	100.0
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	100.0
PRK05865	854	hypothetical protein; Provisional	100.0
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	100.0
PLN02996	491	fatty acyl-CoA reductase	100.0
PRK07201	657	short chain dehydrogenase; Provisional	100.0
PLN02778	298	3,5-epimerase/4-reductase	99.98
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.97
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.97
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.96
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.96
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.96
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.96
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.95
PRK12320	699	hypothetical protein; Provisional	99.95
PLN02260	668	probable rhamnose biosynthetic enzyme	99.95
PLN02503	605	fatty acyl-CoA reductase 2	99.95
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.94
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.94
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.93
PRK06482	276	short chain dehydrogenase; Provisional	99.93
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.92
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.92
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.91
PRK09135	249	pteridine reductase; Provisional	99.91
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.91
PRK06180	277	short chain dehydrogenase; Provisional	99.91
PRK08263	275	short chain dehydrogenase; Provisional	99.91
PRK07775	274	short chain dehydrogenase; Provisional	99.91
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.9
PRK05875	276	short chain dehydrogenase; Provisional	99.9
PRK06914	280	short chain dehydrogenase; Provisional	99.9
PRK07806	248	short chain dehydrogenase; Provisional	99.9
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.9
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.9
PLN03209	576	translocon at the inner envelope of chloroplast su	99.89
KOG2774	366	consensus NAD dependent epimerase [General functio	99.89
PRK07074	257	short chain dehydrogenase; Provisional	99.89
PRK07067	257	sorbitol dehydrogenase; Provisional	99.89
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.89
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.89
PRK07774	250	short chain dehydrogenase; Provisional	99.89
PRK06182	273	short chain dehydrogenase; Validated	99.88
PRK06138	252	short chain dehydrogenase; Provisional	99.88
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.88
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.88
PRK12746	254	short chain dehydrogenase; Provisional	99.88
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK08219	227	short chain dehydrogenase; Provisional	99.88
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.88
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.87
PRK12829	264	short chain dehydrogenase; Provisional	99.87
PRK05876	275	short chain dehydrogenase; Provisional	99.87
PRK06194	287	hypothetical protein; Provisional	99.87
PRK12828	239	short chain dehydrogenase; Provisional	99.87
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.87
PRK07060	245	short chain dehydrogenase; Provisional	99.87
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.87
PRK07890	258	short chain dehydrogenase; Provisional	99.87
PRK06179	270	short chain dehydrogenase; Provisional	99.86
PRK05993	277	short chain dehydrogenase; Provisional	99.86
PRK06128	300	oxidoreductase; Provisional	99.86
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.86
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.86
PRK08628	258	short chain dehydrogenase; Provisional	99.86
PRK05717	255	oxidoreductase; Validated	99.86
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.86
PRK06181	263	short chain dehydrogenase; Provisional	99.86
PRK09186	256	flagellin modification protein A; Provisional	99.86
PRK12827	249	short chain dehydrogenase; Provisional	99.86
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.86
PRK10538	248	malonic semialdehyde reductase; Provisional	99.85
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.85
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.85
PRK12939	250	short chain dehydrogenase; Provisional	99.85
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.85
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.85
PRK06123	248	short chain dehydrogenase; Provisional	99.85
PRK06701	290	short chain dehydrogenase; Provisional	99.85
PRK07454	241	short chain dehydrogenase; Provisional	99.85
PLN02253	280	xanthoxin dehydrogenase	99.85
PRK08264	238	short chain dehydrogenase; Validated	99.85
PRK07825	273	short chain dehydrogenase; Provisional	99.85
PRK06841	255	short chain dehydrogenase; Provisional	99.84
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.84
PRK06500	249	short chain dehydrogenase; Provisional	99.84
PRK07024	257	short chain dehydrogenase; Provisional	99.84
PRK09134	258	short chain dehydrogenase; Provisional	99.84
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.84
PRK07326	237	short chain dehydrogenase; Provisional	99.84
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.84
PRK07035	252	short chain dehydrogenase; Provisional	99.84
PRK07985	294	oxidoreductase; Provisional	99.84
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.84
PRK12937	245	short chain dehydrogenase; Provisional	99.84
PRK09291	257	short chain dehydrogenase; Provisional	99.84
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.83
PRK06196	315	oxidoreductase; Provisional	99.83
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.83
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.83
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.83
PRK07856	252	short chain dehydrogenase; Provisional	99.83
PRK08643	256	acetoin reductase; Validated	99.83
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.83
PRK07478	254	short chain dehydrogenase; Provisional	99.83
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.83
PRK06523	260	short chain dehydrogenase; Provisional	99.83
PRK05650	270	short chain dehydrogenase; Provisional	99.83
PRK07814	263	short chain dehydrogenase; Provisional	99.83
PRK08265	261	short chain dehydrogenase; Provisional	99.83
PRK06398	258	aldose dehydrogenase; Validated	99.82
PRK08017	256	oxidoreductase; Provisional	99.82
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.82
PRK07063	260	short chain dehydrogenase; Provisional	99.82
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.82
PRK08324	681	short chain dehydrogenase; Validated	99.82
PRK12747	252	short chain dehydrogenase; Provisional	99.82
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.82
PRK05693	274	short chain dehydrogenase; Provisional	99.82
PRK08251	248	short chain dehydrogenase; Provisional	99.82
PRK09242	257	tropinone reductase; Provisional	99.82
PRK07041	230	short chain dehydrogenase; Provisional	99.82
PRK07102	243	short chain dehydrogenase; Provisional	99.82
PRK07577	234	short chain dehydrogenase; Provisional	99.82
PRK06949	258	short chain dehydrogenase; Provisional	99.82
PRK08267	260	short chain dehydrogenase; Provisional	99.82
PRK06101	240	short chain dehydrogenase; Provisional	99.82
PRK06197	306	short chain dehydrogenase; Provisional	99.82
PRK06172	253	short chain dehydrogenase; Provisional	99.82
PRK07069	251	short chain dehydrogenase; Validated	99.82
PRK12743	256	oxidoreductase; Provisional	99.82
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.82
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.82
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.82
PRK06057	255	short chain dehydrogenase; Provisional	99.82
PRK12744	257	short chain dehydrogenase; Provisional	99.81
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.81
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK08589	272	short chain dehydrogenase; Validated	99.81
PRK06114	254	short chain dehydrogenase; Provisional	99.81
PRK07576	264	short chain dehydrogenase; Provisional	99.81
PRK07904	253	short chain dehydrogenase; Provisional	99.81
PRK07109	334	short chain dehydrogenase; Provisional	99.81
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.81
PRK05866	293	short chain dehydrogenase; Provisional	99.81
PRK09072	263	short chain dehydrogenase; Provisional	99.8
COG2910	211	Putative NADH-flavin reductase [General function p	99.8
PRK06198	260	short chain dehydrogenase; Provisional	99.8
PRK08226	263	short chain dehydrogenase; Provisional	99.8
PRK05867	253	short chain dehydrogenase; Provisional	99.8
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.8
PRK12742	237	oxidoreductase; Provisional	99.8
PRK08278	273	short chain dehydrogenase; Provisional	99.79
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.79
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.79
PRK06139	330	short chain dehydrogenase; Provisional	99.79
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.79
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.79
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.79
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.79
PRK06924	251	short chain dehydrogenase; Provisional	99.78
PRK07677	252	short chain dehydrogenase; Provisional	99.78
PRK08339	263	short chain dehydrogenase; Provisional	99.78
PRK08703	239	short chain dehydrogenase; Provisional	99.78
PRK06483	236	dihydromonapterin reductase; Provisional	99.78
PRK05872	296	short chain dehydrogenase; Provisional	99.78
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.78
PRK07062	265	short chain dehydrogenase; Provisional	99.78
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.77
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.77
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.77
PRK07023	243	short chain dehydrogenase; Provisional	99.77
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.77
PRK06484	520	short chain dehydrogenase; Validated	99.77
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.77
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.76
PRK07831	262	short chain dehydrogenase; Provisional	99.76
PRK05854	313	short chain dehydrogenase; Provisional	99.76
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.76
PRK06953	222	short chain dehydrogenase; Provisional	99.76
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.76
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.76
PRK06125	259	short chain dehydrogenase; Provisional	99.76
PRK07832	272	short chain dehydrogenase; Provisional	99.75
PRK05855	582	short chain dehydrogenase; Validated	99.75
PRK06940	275	short chain dehydrogenase; Provisional	99.74
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.74
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.74
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.73
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.73
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.73
PRK07201	657	short chain dehydrogenase; Provisional	99.73
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.72
PRK07578	199	short chain dehydrogenase; Provisional	99.72
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.72
KOG3019	315	consensus Predicted nucleoside-diphosphate sugar e	99.72
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.72
PRK08177	225	short chain dehydrogenase; Provisional	99.72
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.72
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.71
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.71
PRK07791	286	short chain dehydrogenase; Provisional	99.71
PRK06484	520	short chain dehydrogenase; Validated	99.7
PRK05599	246	hypothetical protein; Provisional	99.69
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.69
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.69
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.69
PRK05884	223	short chain dehydrogenase; Provisional	99.69
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.69
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.68
PLN02780	320	ketoreductase/ oxidoreductase	99.68
PRK12367	245	short chain dehydrogenase; Provisional	99.68
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.67
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.67
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.65
PRK08862	227	short chain dehydrogenase; Provisional	99.64
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.64
PLN00015	308	protochlorophyllide reductase	99.62
KOG1208	314	consensus Dehydrogenases with different specificit	99.6
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.59
KOG0725	270	consensus Reductases with broad range of substrate	99.59
PRK08303	305	short chain dehydrogenase; Provisional	99.59
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.54
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.53
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.53
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.52
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.51
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.5
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.5
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.45
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.45
COG1028	251	FabG Dehydrogenases with different specificities (	99.44
KOG4288	283	consensus Predicted oxidoreductase [General functi	99.44
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.42
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.42
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.41
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.38
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.35
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.35
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.33
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.3
PTZ00325	321	malate dehydrogenase; Provisional	99.28
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.2
PLN00106	323	malate dehydrogenase	99.13
PRK06720	169	hypothetical protein; Provisional	99.09
PRK08309	177	short chain dehydrogenase; Provisional	99.06
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.97
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.9
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	98.88
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	98.88
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	98.71
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	98.64
PRK05086	312	malate dehydrogenase; Provisional	98.63
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.62
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	98.61
PRK09620	229	hypothetical protein; Provisional	98.58
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.53
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.49
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.46
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.46
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.43
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	98.41
PRK14982	340	acyl-ACP reductase; Provisional	98.32
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	98.24
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.19
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.17
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.17
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.12
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.1
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	98.1
PRK05442	326	malate dehydrogenase; Provisional	98.07
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.01
PF13950	62	Epimerase_Csub: UDP-glucose 4-epimerase C-term sub	97.99
COG3268	382	Uncharacterized conserved protein [Function unknow	97.96
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.92
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.9
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.89
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.88
PRK06223	307	malate dehydrogenase; Reviewed	97.88
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.85
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.84
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	97.84
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.82
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.81
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.79
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.79
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	97.77
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.77
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.75
PLN02602	350	lactate dehydrogenase	97.72
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.7
PTZ00117	319	malate dehydrogenase; Provisional	97.7
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.68
PRK09496	453	trkA potassium transporter peripheral membrane com	97.65
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.61
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.61
PRK04148	134	hypothetical protein; Provisional	97.57
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.57
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.53
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.53
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.52
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.5
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.49
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.49
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.45
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.4
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.39
PRK09496	453	trkA potassium transporter peripheral membrane com	97.36
COG4982	866	3-oxoacyl-[acyl-carrier protein]	97.35
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.34
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.29
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	97.26
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.26
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.26
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.26
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.25
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.24
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	97.24
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.24
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.23
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.21
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.19
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.16
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.15
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.14
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.1
PLN02383	344	aspartate semialdehyde dehydrogenase	97.06
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.03
PRK08655	437	prephenate dehydrogenase; Provisional	97.03
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.02
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.01
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.97
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.97
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.94
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.93
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.93
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.92
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.88
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.88
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.87
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.86
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.86
PRK10669	558	putative cation:proton antiport protein; Provision	96.85
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.84
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	96.79
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.79
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.78
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.78
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.77
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	96.77
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.76
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.75
PF08732	410	HIM1: HIM1; InterPro: IPR014843 HIM1 (high inducti	96.73
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.68
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.68
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.68
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.68
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.67
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.66
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.66
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.66
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.64
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.63
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.62
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.59
PRK07417	279	arogenate dehydrogenase; Reviewed	96.59
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	96.59
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	96.58
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	96.57
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.57
PRK08328	231	hypothetical protein; Provisional	96.56
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.56
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	96.56
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.55
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.55
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.52
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.51
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.51
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.5
PRK06849	389	hypothetical protein; Provisional	96.48
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.46
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.45
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.45
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.43
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.43
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.42
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.41
PRK13243	333	glyoxylate reductase; Reviewed	96.4
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	96.39
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.38
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.38
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.37
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	96.34
PRK07574	385	formate dehydrogenase; Provisional	96.31
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.3
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.29
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.29
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.28
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.27
PRK12480	330	D-lactate dehydrogenase; Provisional	96.25
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.25
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.23
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.23
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.23
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.22
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	96.21
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.2
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	96.2
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.19
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.18
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.18
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	96.18
KOG1496	332	consensus Malate dehydrogenase [Energy production	96.17
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.16
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.16
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.15
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.14
PRK06436	303	glycerate dehydrogenase; Provisional	96.1
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.09
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	96.07
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.04
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	96.04
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.04
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.03
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	96.01
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.99
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.99
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.94
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.93
PLN03139	386	formate dehydrogenase; Provisional	95.91
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.91
PLN00203	519	glutamyl-tRNA reductase	95.91
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.9
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.87
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.87
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.82
PRK08818	370	prephenate dehydrogenase; Provisional	95.82
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.82
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	95.78
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.75
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	95.73
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.71
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.71
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.7
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	95.7
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.69

>PLN02650 dihydroflavonol-4-reductase

Probab=100.00  E-value=1.5e-49  Score=357.23  Aligned_cols=327  Identities=79%  Similarity=1.308  Sum_probs=250.3

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |.+..|+||||||+||||++++++|+++|++|++++|+.........+...+....+++++.+|++|.+.+.++++++|+
T Consensus         1 ~~~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~   80 (351)
T PLN02650          1 MGSQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG   80 (351)
T ss_pred             CCCCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence            67778999999999999999999999999999999998765544433322221123688999999999999999999999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |||+|+.......++....++.|+.++.++++++.+.+.+++|||+||.++|+........++|+.|...+...++..|.
T Consensus        81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  160 (351)
T PLN02650         81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTG  160 (351)
T ss_pred             EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcccccc
Confidence            99999875533233434678999999999999999876468999999998886332222336777654433322333456


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  240 (338)
                      ++|+.+|.++|.+++.+++++|++++++||+++|||+........+...+....+....+.....++|+|++|+|++++.
T Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~  240 (351)
T PLN02650        161 WMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMPPSLITALSLITGNEAHYSIIKQGQFVHLDDLCNAHIF  240 (351)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCCccHHHHHHHhcCCccccCcCCCcceeeHHHHHHHHHH
Confidence            79999999999999999999999999999999999986544333332222222233222333344799999999999999


Q ss_pred             hhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcccccHHHHHHHHHHHHH
Q 040253          241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~~~~~~  320 (338)
                      +++++..++.|++++.++|+.|+++.+.+.++...++......+........|++++++|||+|+++++++|+++++|++
T Consensus       241 ~l~~~~~~~~~i~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~egl~~~i~~~~  320 (351)
T PLN02650        241 LFEHPAAEGRYICSSHDATIHDLAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKLTDLGFTFKYSLEDMFDGAIETCR  320 (351)
T ss_pred             HhcCcCcCceEEecCCCcCHHHHHHHHHHhCcccCCCCCCCCcCcccccccCChHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            99887666789878888999999999999887555554443333344555678888878999999999999999999999


Q ss_pred             HcCCCCC
Q 040253          321 AKGLLPL  327 (338)
Q Consensus       321 ~~~~~~~  327 (338)
                      +.+.+++
T Consensus       321 ~~~~~~~  327 (351)
T PLN02650        321 EKGLIPL  327 (351)
T ss_pred             HcCCCCc
Confidence            9998855

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=100.00  E-value=3.3e-49  Score=335.21  Aligned_cols=321  Identities=46%  Similarity=0.814  Sum_probs=272.3

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      |.. .+++|+||||+||||+|++++|+++||.|++++|++++.+..+.+.+++...++...+.+|+.|++++.++++++|
T Consensus         1 m~~~~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    1 MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCCCCCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCC
Confidence            554 5789999999999999999999999999999999999977777777777766789999999999999999999999


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeecc---CCCCCCcCCCCCCchhhhhhc
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVE---EHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~---~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      .|||+|.++.....+++.+.++.++.|+.+++++|++..+++|+||+||..+....   ......++|+.|++.++-...
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~  160 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCK  160 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhh
Confidence            99999999887655666689999999999999999998889999999998777533   334567899999988765432


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHH
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS  236 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  236 (338)
                         .+.|..+|..+|+.+++++++.+++.+.+-|+.|+||...+.........+..+.|....+.... ..|+|++|+|.
T Consensus       161 ---~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~~n~~-~~~VdVrDVA~  236 (327)
T KOG1502|consen  161 ---KLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETYPNFW-LAFVDVRDVAL  236 (327)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccCCCCc-eeeEeHHHHHH
Confidence               27899999999999999999999999999999999999877655555555565666444333332 34999999999


Q ss_pred             HHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCc-cccccccccchhhhhhcC-CcccccHHHHHHH
Q 040253          237 AHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDV-DENMKNMLFSSKKLTDLG-FKFKYSLDDMFTG  314 (338)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lg-~~~~~~~~~~i~~  314 (338)
                      +.+.+++++...|+|+|.++..++.|+++.+.+.+|...+|...... ........++++++++|| |++. +++|++.+
T Consensus       237 AHv~a~E~~~a~GRyic~~~~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~-~l~e~~~d  315 (327)
T KOG1502|consen  237 AHVLALEKPSAKGRYICVGEVVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFR-PLEETLSD  315 (327)
T ss_pred             HHHHHHcCcccCceEEEecCcccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHhcccceec-ChHHHHHH
Confidence            99999999999999999999888999999999999987766665544 334444568999999988 6666 99999999


Q ss_pred             HHHHHHHcCCCC
Q 040253          315 AVDTCRAKGLLP  326 (338)
Q Consensus       315 ~~~~~~~~~~~~  326 (338)
                      ++.++++.+++.
T Consensus       316 t~~sl~~~~~l~  327 (327)
T KOG1502|consen  316 TVESLREKGLLL  327 (327)
T ss_pred             HHHHHHHhcCCC
Confidence            999999988763

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.9e-49  Score=325.53  Aligned_cols=304  Identities=17%  Similarity=0.185  Sum_probs=248.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcC--CCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--Ccc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRD--PDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d   79 (338)
                      |++|||||+||||++++++++++.  .+|+.+++-  ..+.+.+..+..    .++..++++|++|.+.+.++++  ++|
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~----~~~~~fv~~DI~D~~~v~~~~~~~~~D   76 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVED----SPRYRFVQGDICDRELVDRLFKEYQPD   76 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhc----CCCceEEeccccCHHHHHHHHHhcCCC
Confidence            689999999999999999999985  457777761  112233333322    2689999999999999999998  699


Q ss_pred             EEEEecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           80 GVFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        80 ~vi~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      +|+|+|+-.+ ++.-..+..+++.|+.|+.+|+|+++++...-||+++||..|||.-......++|++         +-.
T Consensus        77 ~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~t---------p~~  147 (340)
T COG1088          77 AVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETT---------PYN  147 (340)
T ss_pred             eEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCC---------CCC
Confidence            9999999776 444566679999999999999999999883359999999999996555566899998         667


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-CCCCCCCC-CccccHHHHHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-AHYPIIKQ-GQFVHLDDLCS  236 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~D~a~  236 (338)
                      |.++|+.||++++.+++.|.+.+|++++|.|+++-|||++-+.....+. +...+.|++ +.++.|.+ +||+||+|-++
T Consensus       148 PsSPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~-I~nal~g~~lpvYGdG~~iRDWl~VeDh~~  226 (340)
T COG1088         148 PSSPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLM-IINALLGKPLPVYGDGLQIRDWLYVEDHCR  226 (340)
T ss_pred             CCCCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHH-HHHHHcCCCCceecCCcceeeeEEeHhHHH
Confidence            9999999999999999999999999999999999999997664222222 123344665 45667766 88999999999


Q ss_pred             HHHHhhcCCCCCCceEEec-CCCCHHHHHHHHHHhCCCCCCC-----CCCCCccccccccccchhhhh-hcCCcccccHH
Q 040253          237 AHIFLFEHPNAKGRYICSS-HPATILELAKFLREKYPEFNVP-----TEFEDVDENMKNMLFSSKKLT-DLGFKFKYSLD  309 (338)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~-~~~t~~e~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~lg~~~~~~~~  309 (338)
                      ++..++++...+++||+++ ...+-.|+++.|++.+++....     ..+.+.|+--.++.+|.+|+. +|||.|+++|+
T Consensus       227 ai~~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe  306 (340)
T COG1088         227 AIDLVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQETFE  306 (340)
T ss_pred             HHHHHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCCCHH
Confidence            9999999999999999855 6699999999999999864331     234556777778889999965 49999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 040253          310 DMFTGAVDTCRAKG  323 (338)
Q Consensus       310 ~~i~~~~~~~~~~~  323 (338)
                      ++|+++++||.++.
T Consensus       307 ~GlrkTv~WY~~N~  320 (340)
T COG1088         307 TGLRKTVDWYLDNE  320 (340)
T ss_pred             HHHHHHHHHHHhch
Confidence            99999999998864

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.6e-48  Score=321.72  Aligned_cols=294  Identities=21%  Similarity=0.286  Sum_probs=239.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      |+||||||+||||+|.+.+|++.|++|++++.-.. ..+.+...        .++++++|+.|.+.+.+.|+  ++|+||
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~--------~~~f~~gDi~D~~~L~~vf~~~~idaVi   72 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL--------QFKFYEGDLLDRALLTAVFEENKIDAVV   72 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc--------cCceEEeccccHHHHHHHHHhcCCCEEE
Confidence            68999999999999999999999999999987332 33333211        15899999999999999997  799999


Q ss_pred             EecccCC--CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           83 HLATPMD--FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        83 ~~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |+||...  ....+|. ++++.|+.++.+|+++|++.+ +++|||.||+.|||  .+...|++|+.         +..|.
T Consensus        73 HFAa~~~VgESv~~Pl-~Yy~NNv~gTl~Ll~am~~~g-v~~~vFSStAavYG--~p~~~PI~E~~---------~~~p~  139 (329)
T COG1087          73 HFAASISVGESVQNPL-KYYDNNVVGTLNLIEAMLQTG-VKKFIFSSTAAVYG--EPTTSPISETS---------PLAPI  139 (329)
T ss_pred             ECccccccchhhhCHH-HHHhhchHhHHHHHHHHHHhC-CCEEEEecchhhcC--CCCCcccCCCC---------CCCCC
Confidence            9998644  5555665 899999999999999999999 99999999999999  66678999998         66699


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC------ChhHH-HhhhhcccCCC---CCCC------CC
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM------PPSLI-TALSPITRNEA---HYPI------IK  224 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~-~~~~~~~~~~~---~~~~------~~  224 (338)
                      ++||.||++.|++++.+++.+++++++||.+|+.|....+.+      ...+. ..+....|+..   .|+.      +.
T Consensus       140 NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT  219 (329)
T COG1087         140 NPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGT  219 (329)
T ss_pred             CcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCC
Confidence            999999999999999999999999999999999997544321      12222 22222223322   2322      21


Q ss_pred             C-CccccHHHHHHHHHHhhcCCCCC---CceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCC-ccccccccccchhhhh
Q 040253          225 Q-GQFVHLDDLCSAHIFLFEHPNAK---GRYIC-SSHPATILELAKFLREKYPEFNVPTEFED-VDENMKNMLFSSKKLT  298 (338)
Q Consensus       225 ~-~~~i~v~D~a~~~~~~l~~~~~~---~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  298 (338)
                      - +|||||.|+|++.+.+++.-..+   .+||+ ++...|+.|+.+.+.+..| .++|..+.+ ++.++..+..|+++++
T Consensus       220 ~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~vtg-~~ip~~~~~RR~GDpa~l~Ad~~kA~  298 (329)
T COG1087         220 CIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTG-RDIPVEIAPRRAGDPAILVADSSKAR  298 (329)
T ss_pred             eeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHHhC-CcCceeeCCCCCCCCceeEeCHHHHH
Confidence            1 78999999999999999753332   37898 5789999999999999988 577776554 5888999999999999


Q ss_pred             h-cCCcccc-cHHHHHHHHHHHHHH
Q 040253          299 D-LGFKFKY-SLDDMFTGAVDTCRA  321 (338)
Q Consensus       299 ~-lg~~~~~-~~~~~i~~~~~~~~~  321 (338)
                      + |||+|++ +++++++..+.|...
T Consensus       299 ~~Lgw~p~~~~L~~ii~~aw~W~~~  323 (329)
T COG1087         299 QILGWQPTYDDLEDIIKDAWDWHQQ  323 (329)
T ss_pred             HHhCCCcccCCHHHHHHHHHHHhhh
Confidence            8 9999999 699999999999984

>PLN00198 anthocyanidin reductase; Provisional

Probab=100.00  E-value=6.3e-47  Score=338.64  Aligned_cols=321  Identities=46%  Similarity=0.832  Sum_probs=240.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+||||||+||||++|+++|+++|++|++++|+.........+...+. .++++++.+|++|.+++.++++++|+|||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQE-LGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCC-CCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            36899999999999999999999999999999998765443322222211 13689999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCC--CCCCcCCCCCCchhhhhhccCCCc
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEH--RKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~--~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      +|+.......++...+++.|+.++.++++++.+.+.+++|||+||.++|+....  ...+++|+.|........+..|.+
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~~  166 (338)
T PLN00198         87 VATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPTW  166 (338)
T ss_pred             eCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCccc
Confidence            999654333334345679999999999999987633789999999999983321  234567765543322222345788


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC-C-C-----CCCCccccHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY-P-I-----IKQGQFVHLDDL  234 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-----~~~~~~i~v~D~  234 (338)
                      +|+.+|.++|.+++.++++++++++++||+++|||+........+........+..... + .     .+.++|+|++|+
T Consensus       167 ~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~  246 (338)
T PLN00198        167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDV  246 (338)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHHHHHHHHcCCccccccccccccccCCcceeEHHHH
Confidence            99999999999999999989999999999999999865433322211112222322111 1 1     112689999999


Q ss_pred             HHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcccccHHHHHHH
Q 040253          235 CSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTG  314 (338)
Q Consensus       235 a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~  314 (338)
                      +++++.+++.....+.|++++...|+.|+++.+.+.++..+++..+...+. .....+|+++++++||+|+++++++|++
T Consensus       247 a~a~~~~~~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~G~~p~~~l~~gi~~  325 (338)
T PLN00198        247 CRAHIFLAEKESASGRYICCAANTSVPELAKFLIKRYPQYQVPTDFGDFPS-KAKLIISSEKLISEGFSFEYGIEEIYDQ  325 (338)
T ss_pred             HHHHHHHhhCcCcCCcEEEecCCCCHHHHHHHHHHHCCCCCCCccccccCC-CCccccChHHHHhCCceecCcHHHHHHH
Confidence            999999998866667888788889999999999998875445444332221 2345678889888999999999999999


Q ss_pred             HHHHHHHcCCCC
Q 040253          315 AVDTCRAKGLLP  326 (338)
Q Consensus       315 ~~~~~~~~~~~~  326 (338)
                      +++|+++++++.
T Consensus       326 ~~~~~~~~~~~~  337 (338)
T PLN00198        326 TVEYFKAKGLLK  337 (338)
T ss_pred             HHHHHHHcCCCC
Confidence            999999988764

>PLN02214 cinnamoyl-CoA reductase

Probab=100.00  E-value=1.4e-46  Score=335.88  Aligned_cols=315  Identities=37%  Similarity=0.637  Sum_probs=242.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH--HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK--VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ++|+||||||+||||++++++|+++|++|++++|+.+....  +..+.   ....+++++.+|++|.+++.++++++|+|
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELE---GGKERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhh---CCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            46899999999999999999999999999999997653211  11111   11136889999999999999999999999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc-eeeeccCC-CCCCcCCCCCCchhhhhhccCC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA-GTLDVEEH-RKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~-~v~~~~~~-~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      ||+|+...    ......++.|+.++.+++++|++.+ +++|||+||. .+|+.... ...+++|++|++.+.   +..|
T Consensus        86 ih~A~~~~----~~~~~~~~~nv~gt~~ll~aa~~~~-v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~---~~~p  157 (342)
T PLN02214         86 FHTASPVT----DDPEQMVEPAVNGAKFVINAAAEAK-VKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDF---CKNT  157 (342)
T ss_pred             EEecCCCC----CCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeccceeeeccCCCCCCcccCcccCCChhh---cccc
Confidence            99999653    2345788999999999999999988 8899999996 57863221 123578887654321   3346


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHI  239 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  239 (338)
                      .+.|+.+|..+|++++.+++++|++++++||+++|||+........+........+....++ ...++|||++|+|++++
T Consensus       158 ~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~V~Dva~a~~  236 (342)
T PLN02214        158 KNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVLKYLTGSAKTYA-NLTQAYVDVRDVALAHV  236 (342)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCcccCC-CCCcCeeEHHHHHHHHH
Confidence            77999999999999999998889999999999999998654322222222222234333332 23478999999999999


Q ss_pred             HhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCC-ccccccccccchhhhhhcCCcccccHHHHHHHHHHH
Q 040253          240 FLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFED-VDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDT  318 (338)
Q Consensus       240 ~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~~~~  318 (338)
                      .+++++..++.||+++...+++|+++.+.+.++..++|..... .+.......+|++++++|||+|+ +++|+|+++++|
T Consensus       237 ~al~~~~~~g~yn~~~~~~~~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LG~~p~-~lee~i~~~~~~  315 (342)
T PLN02214        237 LVYEAPSASGRYLLAESARHRGEVVEILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFT-STKQSLYDTVKS  315 (342)
T ss_pred             HHHhCcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCCCccccCCCCCccccCcHHHHHcCCccc-CHHHHHHHHHHH
Confidence            9999876678999987889999999999999976555544321 22233445688999888999995 999999999999


Q ss_pred             HHHcCCCCCccCC
Q 040253          319 CRAKGLLPLLCEN  331 (338)
Q Consensus       319 ~~~~~~~~~~~~~  331 (338)
                      +++.|+++++.+.
T Consensus       316 ~~~~~~~~~~~~~  328 (342)
T PLN02214        316 LQEKGHLAPPPPS  328 (342)
T ss_pred             HHHcCCCCCCCCc
Confidence            9999999766554

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=100.00  E-value=1.2e-45  Score=328.18  Aligned_cols=317  Identities=36%  Similarity=0.644  Sum_probs=238.4

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |...+++||||||+||||++++++|+++|++|+++.|+.........+.......++++++.+|++|.+.+.++++++|+
T Consensus         1 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~   80 (322)
T PLN02986          1 MNGGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDA   80 (322)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCE
Confidence            55567899999999999999999999999999999998776544443332211124789999999999999999999999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCC---CCCCcCCCCCCchhhhhhcc
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEH---RKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~---~~~~~~e~~~~~~~~~~~~~  157 (338)
                      |||+|+.......++....++.|+.++.++++++++...++|||++||.++|.....   ...+++|++|.....   ..
T Consensus        81 vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~---~~  157 (322)
T PLN02986         81 VFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSL---CR  157 (322)
T ss_pred             EEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHH---hh
Confidence            999999765433344445789999999999999988532889999999876531111   234577877643211   11


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHH
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSA  237 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  237 (338)
                      .+.+.|+.+|..+|..++.+.++++++++++||+++|||+.................+... ++ ...++|+|++|+|++
T Consensus       158 ~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~~-~~~~~~v~v~Dva~a  235 (322)
T PLN02986        158 ETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL-FN-NRFYRFVDVRDVALA  235 (322)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC-CC-CcCcceeEHHHHHHH
Confidence            3567899999999999999999899999999999999998654221111111122223322 22 223689999999999


Q ss_pred             HHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccc--cccchhhhhhcCCcccccHHHHHHHH
Q 040253          238 HIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKN--MLFSSKKLTDLGFKFKYSLDDMFTGA  315 (338)
Q Consensus       238 ~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~~~~~i~~~  315 (338)
                      ++.+++++..+++||++++.+|+.|+++.+.+.+|...++..  ..+.....  ..+|++++++|||+|+ +++|+|+++
T Consensus       236 ~~~al~~~~~~~~yni~~~~~s~~e~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~lg~~~~-~l~e~~~~~  312 (322)
T PLN02986        236 HIKALETPSANGRYIIDGPIMSVNDIIDILRELFPDLCIADT--NEESEMNEMICKVCVEKVKNLGVEFT-PMKSSLRDT  312 (322)
T ss_pred             HHHHhcCcccCCcEEEecCCCCHHHHHHHHHHHCCCCCCCCC--CccccccccCCccCHHHHHHcCCccc-CHHHHHHHH
Confidence            999999877677999988889999999999999986444432  11122222  2478888888999998 999999999


Q ss_pred             HHHHHHcCCC
Q 040253          316 VDTCRAKGLL  325 (338)
Q Consensus       316 ~~~~~~~~~~  325 (338)
                      ++|+++.|++
T Consensus       313 ~~~~~~~~~~  322 (322)
T PLN02986        313 ILSLKEKCLL  322 (322)
T ss_pred             HHHHHHcCCC
Confidence            9999998864

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=100.00  E-value=2.7e-46  Score=335.16  Aligned_cols=306  Identities=16%  Similarity=0.170  Sum_probs=229.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-HHHHHhcC-C-CCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLEL-P-KASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~-~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +|+|||||||||||++|+++|+++|++|++++|...... ........ . ....++.++.+|++|.+.+.++++++|+|
T Consensus        15 ~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~V   94 (348)
T PRK15181         15 PKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDYV   94 (348)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCEE
Confidence            589999999999999999999999999999998654321 11111110 0 01136889999999999999999999999


Q ss_pred             EEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      ||+|+..... .......+++.|+.++.+++++|++.+ +++|||+||.++||  .....+..|++         +..|.
T Consensus        95 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~v~~SS~~vyg--~~~~~~~~e~~---------~~~p~  162 (348)
T PRK15181         95 LHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH-VSSFTYAASSSTYG--DHPDLPKIEER---------IGRPL  162 (348)
T ss_pred             EECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeechHhhC--CCCCCCCCCCC---------CCCCC
Confidence            9999965421 122334679999999999999999998 89999999999998  33334455554         33577


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC--CChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS--MPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDLC  235 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~a  235 (338)
                      ++|+.+|.++|.+++.+.++++++++++||+++|||+..+.  ....+...+ ....+.+. .++.+.+ ++|+|++|+|
T Consensus       163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a  242 (348)
T PRK15181        163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVI  242 (348)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHH
Confidence            89999999999999999888899999999999999986532  111122211 22334443 3344444 7899999999


Q ss_pred             HHHHHhhcCCC---CCCceEE-ecCCCCHHHHHHHHHHhCCCCCC------CCCCCCccccccccccchhhhhh-cCCcc
Q 040253          236 SAHIFLFEHPN---AKGRYIC-SSHPATILELAKFLREKYPEFNV------PTEFEDVDENMKNMLFSSKKLTD-LGFKF  304 (338)
Q Consensus       236 ~~~~~~l~~~~---~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-lg~~~  304 (338)
                      ++++.++....   .+++||+ +++++|++|+++.+.+.++....      +......+........|++++++ |||+|
T Consensus       243 ~a~~~~~~~~~~~~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~P  322 (348)
T PRK15181        243 QANLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKIKTFLSYEP  322 (348)
T ss_pred             HHHHHHHhcccccCCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHHHHHhCCCC
Confidence            99998876432   3568998 55889999999999988863211      11111123344456789999987 99999


Q ss_pred             cccHHHHHHHHHHHHHHc
Q 040253          305 KYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       305 ~~~~~~~i~~~~~~~~~~  322 (338)
                      +++++|+|+++++|++++
T Consensus       323 ~~sl~egl~~~~~w~~~~  340 (348)
T PRK15181        323 EFDIKEGLKQTLKWYIDK  340 (348)
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999999864

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=100.00  E-value=2.4e-45  Score=326.58  Aligned_cols=315  Identities=40%  Similarity=0.693  Sum_probs=234.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..|+||||||+||||++++++|+++|++|++++|+.........+.......++++++++|++|++.+.++++++|+|||
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            46899999999999999999999999999999998665333333222211125789999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCcee--eeccC-CCCCCcCCCCCCchhhhhhccCC
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGT--LDVEE-HRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v--~~~~~-~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      +|+.......++...+++.|+.++.++++++.+. + +++|||+||.++  |+... ....+++|+.+....   .....
T Consensus        83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~-~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~---~~~~~  158 (322)
T PLN02662         83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPS-VKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPA---FCEES  158 (322)
T ss_pred             eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCC-CCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChh---Hhhcc
Confidence            9997653333333367899999999999999887 6 889999999864  54211 122356676532210   01112


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHI  239 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  239 (338)
                      .+.|+.+|..+|++++.++++++++++++||+++|||+.................+.. .++ ...++|+|++|+|++++
T Consensus       159 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~i~v~Dva~a~~  236 (322)
T PLN02662        159 KLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQ-TFP-NASYRWVDVRDVANAHI  236 (322)
T ss_pred             cchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCc-cCC-CCCcCeEEHHHHHHHHH
Confidence            3589999999999999999889999999999999999864422111111122222322 222 23478999999999999


Q ss_pred             HhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcccccHHHHHHHHHHHH
Q 040253          240 FLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTC  319 (338)
Q Consensus       240 ~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~~~~~  319 (338)
                      .+++.+...+.||++++++|++|+++.+.+.++...+|..............+|++++++|||++. +++++|+++++|+
T Consensus       237 ~~~~~~~~~~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~~~-~~~~~l~~~~~~~  315 (322)
T PLN02662        237 QAFEIPSASGRYCLVERVVHYSEVVKILHELYPTLQLPEKCADDKPYVPTYQVSKEKAKSLGIEFI-PLEVSLKDTVESL  315 (322)
T ss_pred             HHhcCcCcCCcEEEeCCCCCHHHHHHHHHHHCCCCCCCCCCCCccccccccccChHHHHHhCCccc-cHHHHHHHHHHHH
Confidence            999987666789888889999999999999987655544332222234456789999999999974 9999999999999


Q ss_pred             HHcCCC
Q 040253          320 RAKGLL  325 (338)
Q Consensus       320 ~~~~~~  325 (338)
                      +++|.+
T Consensus       316 ~~~~~~  321 (322)
T PLN02662        316 KEKGFL  321 (322)
T ss_pred             HHcCCC
Confidence            998874

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=3e-45  Score=329.48  Aligned_cols=323  Identities=43%  Similarity=0.803  Sum_probs=234.9

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      +..|+||||||+||||++++++|+++|++|++++|+............  . .++++++.+|++|.+.+.++++++|+||
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK--E-GDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc--c-CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            457899999999999999999999999999999997654333221111  1 2568999999999999999999999999


Q ss_pred             EecccCCCCC---CCccch-----hhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCC---CCCcCCCCCCchh
Q 040253           83 HLATPMDFES---KDPENE-----VIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHR---KPVYDETSWSDLD  151 (338)
Q Consensus        83 ~~a~~~~~~~---~~~~~~-----~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~---~~~~~e~~~~~~~  151 (338)
                      |+|+......   ......     .++.|+.++.+++++|++.+.+++||++||.++|+.....   ..+++|+.+.+.+
T Consensus        85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~  164 (353)
T PLN02896         85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPID  164 (353)
T ss_pred             ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHH
Confidence            9999754321   122223     3344569999999999876437899999999999733211   1356676433221


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC---CC----C
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP---II----K  224 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----~  224 (338)
                      ...++..+.++|+.+|+++|.+++.+++.++++++++||+++|||+....++..+........+....++   ..    +
T Consensus       165 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  244 (353)
T PLN02896        165 HVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLSPITGDSKLFSILSAVNSRMG  244 (353)
T ss_pred             HhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHHHhcCCccccccccccccccC
Confidence            1111233566899999999999999999999999999999999998765444433333322223322111   11    1


Q ss_pred             CCccccHHHHHHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCC-ccccccccccchhhhhhcCCc
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFED-VDENMKNMLFSSKKLTDLGFK  303 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~lg~~  303 (338)
                      .++|||++|+|++++.+++.+..++.|++++.++|+.|+++.+.+.++.......... ..... ....|++++++|||+
T Consensus       245 ~~dfi~v~Dva~a~~~~l~~~~~~~~~~~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lGw~  323 (353)
T PLN02896        245 SIALVHIEDICDAHIFLMEQTKAEGRYICCVDSYDMSELINHLSKEYPCSNIQVRLDEEKRGSI-PSEISSKKLRDLGFE  323 (353)
T ss_pred             ceeEEeHHHHHHHHHHHHhCCCcCccEEecCCCCCHHHHHHHHHHhCCCCCccccccccccCcc-ccccCHHHHHHcCCC
Confidence            2589999999999999998765567888888899999999999998874322222211 11111 235678888889999


Q ss_pred             ccccHHHHHHHHHHHHHHcCCCCCcc
Q 040253          304 FKYSLDDMFTGAVDTCRAKGLLPLLC  329 (338)
Q Consensus       304 ~~~~~~~~i~~~~~~~~~~~~~~~~~  329 (338)
                      |+++++++|+++++|+++.+.++.-.
T Consensus       324 p~~~l~~~i~~~~~~~~~~~~~~~~~  349 (353)
T PLN02896        324 YKYGIEEIIDQTIDCCVDHGFLPQNR  349 (353)
T ss_pred             ccCCHHHHHHHHHHHHHHCCCCCccc
Confidence            99999999999999999999875443

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=100.00  E-value=6.7e-45  Score=324.00  Aligned_cols=319  Identities=37%  Similarity=0.640  Sum_probs=237.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |+-.+|+||||||+||||++++++|+++|++|++++|+.........+.......++++++.+|++|.+++.++++++|+
T Consensus         1 ~~~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   80 (325)
T PLN02989          1 MADGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCET   80 (325)
T ss_pred             CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence            66678999999999999999999999999999999998765433322222111124689999999999999999999999


Q ss_pred             EEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccC---CCCCCcCCCCCCchhhhhhc
Q 040253           81 VFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEE---HRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        81 vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~---~~~~~~~e~~~~~~~~~~~~  156 (338)
                      |||+|+..... ..++....++.|+.++.++++++......++||++||.++|+...   ....+++|+.+.....   .
T Consensus        81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~---~  157 (325)
T PLN02989         81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSF---A  157 (325)
T ss_pred             EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhH---h
Confidence            99999965422 123345778999999999999998753267999999998876322   1234567776433210   1


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHH
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS  236 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  236 (338)
                      ..+.+.|+.+|..+|.+++.+.+++|++++++||+++|||+...........+.....++.. +. ...++|+|++|+|+
T Consensus       158 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~-~~-~~~r~~i~v~Dva~  235 (325)
T PLN02989        158 EERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNP-FN-TTHHRFVDVRDVAL  235 (325)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCC-CC-CcCcCeeEHHHHHH
Confidence            12356899999999999999998889999999999999998654321111112222223322 22 22378999999999


Q ss_pred             HHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCc-cccccccccchhhhhhcCCcccccHHHHHHHH
Q 040253          237 AHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDV-DENMKNMLFSSKKLTDLGFKFKYSLDDMFTGA  315 (338)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~  315 (338)
                      +++.+++++..++.||+++..+|++|+++.+.+.+|...++...... +........|++++++|||.|+++++++|+++
T Consensus       236 a~~~~l~~~~~~~~~ni~~~~~s~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~p~~~l~~gi~~~  315 (325)
T PLN02989        236 AHVKALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLGIIEFTPTETSLRDT  315 (325)
T ss_pred             HHHHHhcCcccCceEEEecCCCCHHHHHHHHHHHCCCCCCCCCCCCcccccccCcCCCHHHHHHcCCCCCCCHHHHHHHH
Confidence            99999988766679999888999999999999999753332111111 11223557888888889999999999999999


Q ss_pred             HHHHHHcCC
Q 040253          316 VDTCRAKGL  324 (338)
Q Consensus       316 ~~~~~~~~~  324 (338)
                      ++|+++.+.
T Consensus       316 ~~~~~~~~~  324 (325)
T PLN02989        316 VLSLKEKCL  324 (325)
T ss_pred             HHHHHHhCC
Confidence            999998775

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=100.00  E-value=1.2e-43  Score=319.74  Aligned_cols=307  Identities=16%  Similarity=0.193  Sum_probs=225.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      ||+|||||||||||+++++.|+++|++++++.++.........+.... ...+++++.+|++|.+.+.++++  ++|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVA-QSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcc-cCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            479999999999999999999999987655444322211111111111 11367889999999999999887  499999


Q ss_pred             EecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhC--------CCccEEEEecCceeeeccCCCCCCcCCCCCCchhhh
Q 040253           83 HLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNA--------KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFV  153 (338)
Q Consensus        83 ~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~  153 (338)
                      |+||..... ..+....+++.|+.++.++++++.+.        ..+++||++||.++|+.......+++|+.       
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~-------  152 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETT-------  152 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCC-------
Confidence            999875422 12234578999999999999999762        11579999999999984333344677776       


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHh-hhhcccCCC-CCCCCCC-Ccccc
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITA-LSPITRNEA-HYPIIKQ-GQFVH  230 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~-~~~i~  230 (338)
                        +..|.+.|+.+|.++|.+++.++++++++++++||+++|||+.....  .+... .....+.+. .++.+.+ ++|+|
T Consensus       153 --~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~--~~~~~~~~~~~~~~~~~~g~g~~~~~~i~  228 (355)
T PRK10217        153 --PYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEK--LIPLMILNALAGKPLPVYGNGQQIRDWLY  228 (355)
T ss_pred             --CCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCccc--HHHHHHHHHhcCCCceEeCCCCeeeCcCc
Confidence              44577899999999999999999889999999999999999864321  11111 122234332 3344433 78999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCC--CCCC----------CCCccccccccccchhhh
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFN--VPTE----------FEDVDENMKNMLFSSKKL  297 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~--~~~~----------~~~~~~~~~~~~~~~~~~  297 (338)
                      ++|+++++..++++...+++||++ ++++|++|+++.+.+.++...  .|..          ....+.......+|++++
T Consensus       229 v~D~a~a~~~~~~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~  308 (355)
T PRK10217        229 VEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYAIDASKI  308 (355)
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCcccccCHHHH
Confidence            999999999999886667799985 678999999999999876311  1110          111233344567899999


Q ss_pred             hh-cCCcccccHHHHHHHHHHHHHHcC
Q 040253          298 TD-LGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       298 ~~-lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      ++ |||+|+++++++|+++++|++.+.
T Consensus       309 ~~~lg~~p~~~l~e~l~~~~~~~~~~~  335 (355)
T PRK10217        309 ARELGWLPQETFESGMRKTVQWYLANE  335 (355)
T ss_pred             HHhcCCCCcCcHHHHHHHHHHHHHhCH
Confidence            77 999999999999999999998764

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-44  Score=293.26  Aligned_cols=301  Identities=18%  Similarity=0.221  Sum_probs=233.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEc-CCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER--GYAVRATVR-DPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r-~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~   77 (338)
                      ..++++||||+||||++.+..+...  .++.+.++. +-- +...++..    ...++..++++|+.+...+..++.  +
T Consensus         5 ~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~----~n~p~ykfv~~di~~~~~~~~~~~~~~   80 (331)
T KOG0747|consen    5 KEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPV----RNSPNYKFVEGDIADADLVLYLFETEE   80 (331)
T ss_pred             ccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhh----ccCCCceEeeccccchHHHHhhhccCc
Confidence            4589999999999999999999987  466666654 111 11111111    123789999999999888877775  7


Q ss_pred             ccEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcC-CCCCCchhhhhh
Q 040253           78 CTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYD-ETSWSDLDFVRS  155 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~-e~~~~~~~~~~~  155 (338)
                      +|.|+|+|+..+.. .-.+.-++.+.|+.++..|+++++..+++++|||+||..|||.  ..+.... |.+         
T Consensus        81 id~vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGd--s~~~~~~~E~s---------  149 (331)
T KOG0747|consen   81 IDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGD--SDEDAVVGEAS---------  149 (331)
T ss_pred             hhhhhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecC--ccccccccccc---------
Confidence            99999999976622 2233447889999999999999999987999999999999994  3344444 666         


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC--CChhHHHhhhhcccCCC-CCCCCCC-CccccH
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS--MPPSLITALSPITRNEA-HYPIIKQ-GQFVHL  231 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~v  231 (338)
                      .++|.++|+.+|+++|..++.|.+++|++++++|.++||||++...  ++..+..   +..+.+. .-+.+.+ ++|+|+
T Consensus       150 ~~nPtnpyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l---~~~~~~~~i~g~g~~~rs~l~v  226 (331)
T KOG0747|consen  150 LLNPTNPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKL---AMRGKEYPIHGDGLQTRSYLYV  226 (331)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHH---HHhCCCcceecCcccceeeEeH
Confidence            6779999999999999999999999999999999999999997653  1211111   1223333 3344444 779999


Q ss_pred             HHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCC----CCCCC---CCCCCccccccccccchhhhhhcCCc
Q 040253          232 DDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYP----EFNVP---TEFEDVDENMKNMLFSSKKLTDLGFK  303 (338)
Q Consensus       232 ~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~lg~~  303 (338)
                      +|+++++..++++...+++||+ ++...+..|+++.+.+.+.    ..+.+   ..+.++|..-.+..++..|++.|||+
T Consensus       227 eD~~ea~~~v~~Kg~~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik~LGw~  306 (331)
T KOG0747|consen  227 EDVSEAFKAVLEKGELGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIKKLGWR  306 (331)
T ss_pred             HHHHHHHHHHHhcCCccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHHhcCCc
Confidence            9999999999999777999998 5688999999988887653    22222   22445566667789999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHc
Q 040253          304 FKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       304 ~~~~~~~~i~~~~~~~~~~  322 (338)
                      |+++++++|+.+++||.++
T Consensus       307 ~~~p~~eGLrktie~y~~~  325 (331)
T KOG0747|consen  307 PTTPWEEGLRKTIEWYTKN  325 (331)
T ss_pred             ccCcHHHHHHHHHHHHHhh
Confidence            9999999999999999864

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=100.00  E-value=7.2e-43  Score=318.85  Aligned_cols=299  Identities=21%  Similarity=0.271  Sum_probs=222.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .||||||||+||||++|+++|+++|++|++++|.... ......+..    .++++++.+|+.+.     .+.++|+|||
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~----~~~~~~~~~Di~~~-----~~~~~D~ViH  190 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFG----NPRFELIRHDVVEP-----ILLEVDQIYH  190 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhcc----CCceEEEECccccc-----cccCCCEEEE
Confidence            5799999999999999999999999999999985432 121211111    14678888998664     3457999999


Q ss_pred             ecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+.... ....+..++++.|+.++.+|+++|++.+ + +|||+||.+|||  .....+.+|+.+...    .+..|.+.
T Consensus       191 lAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g-~-r~V~~SS~~VYg--~~~~~p~~E~~~~~~----~p~~p~s~  262 (436)
T PLN02166        191 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-RFLLTSTSEVYG--DPLEHPQKETYWGNV----NPIGERSC  262 (436)
T ss_pred             CceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhC-C-EEEEECcHHHhC--CCCCCCCCccccccC----CCCCCCCc
Confidence            9986542 2223345789999999999999999988 4 899999999998  333446677643221    13346789


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHHHHHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDLCSAHI  239 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~~  239 (338)
                      |+.+|..+|++++.+++.++++++++||+++|||+........+...+ ....+.+. .++.+.+ ++|+|++|+++++.
T Consensus       263 Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~  342 (436)
T PLN02166        263 YDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLV  342 (436)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHH
Confidence            999999999999999988899999999999999986432222221222 22234433 3444433 78999999999999


Q ss_pred             HhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhhhh-cCCcccccHHHHHHHHH
Q 040253          240 FLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAV  316 (338)
Q Consensus       240 ~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~  316 (338)
                      .+++.. ..++||++ ++.+|++|+++.+.+.+|.. ....+ ............|++++++ |||+|+++++++|++++
T Consensus       343 ~~~~~~-~~giyNIgs~~~~Si~ela~~I~~~~g~~-~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i  420 (436)
T PLN02166        343 ALMEGE-HVGPFNLGNPGEFTMLELAEVVKETIDSS-ATIEFKPNTADDPHKRKPDISKAKELLNWEPKISLREGLPLMV  420 (436)
T ss_pred             HHHhcC-CCceEEeCCCCcEeHHHHHHHHHHHhCCC-CCeeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            999764 46799985 57899999999999998742 22222 2223334556789999988 89999999999999999


Q ss_pred             HHHHHc
Q 040253          317 DTCRAK  322 (338)
Q Consensus       317 ~~~~~~  322 (338)
                      +|++.+
T Consensus       421 ~~~~~~  426 (436)
T PLN02166        421 SDFRNR  426 (436)
T ss_pred             HHHHHH
Confidence            999764

>PLN02427 UDP-apiose/xylose synthase

Probab=100.00  E-value=8.1e-43  Score=317.30  Aligned_cols=313  Identities=19%  Similarity=0.267  Sum_probs=222.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +|+|||||||||||++|+++|+++ |++|++++|+......+..... ....++++++.+|++|.+.+.++++++|+|||
T Consensus        14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~-~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH   92 (386)
T PLN02427         14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDT-VPWSGRIQFHRINIKHDSRLEGLIKMADLTIN   92 (386)
T ss_pred             CcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccc-ccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence            579999999999999999999998 5999999987654332221100 01114799999999999999999999999999


Q ss_pred             ecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchh-----------
Q 040253           84 LATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD-----------  151 (338)
Q Consensus        84 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~-----------  151 (338)
                      +|+.... .......+.+..|+.++.+++++|++.+  ++|||+||.++||..  ...+++|+.+....           
T Consensus        93 lAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS~~vYg~~--~~~~~~e~~p~~~~~~~~~~~e~~~  168 (386)
T PLN02427         93 LAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFSTCEVYGKT--IGSFLPKDHPLRQDPAFYVLKEDES  168 (386)
T ss_pred             cccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEeeeeeeCCC--cCCCCCccccccccccccccccccc
Confidence            9986542 1112233567789999999999998876  689999999999832  22233333321100           


Q ss_pred             --hhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCC---------CCChhHHHhh-hhcccCCC-
Q 040253          152 --FVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTS---------SMPPSLITAL-SPITRNEA-  218 (338)
Q Consensus       152 --~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~---------~~~~~~~~~~-~~~~~~~~-  218 (338)
                        ...+...|.+.|+.+|.++|++++.+++.++++++++||+++|||+...         .....+.... ....+.+. 
T Consensus       169 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  248 (386)
T PLN02427        169 PCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRREPLK  248 (386)
T ss_pred             ccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcCCCeE
Confidence              0001123567899999999999999988889999999999999997531         1111221111 22234332 


Q ss_pred             CCCCCCC-CccccHHHHHHHHHHhhcCCC--CCCceEEec--CCCCHHHHHHHHHHhCCCCCC-CC------CCCCc---
Q 040253          219 HYPIIKQ-GQFVHLDDLCSAHIFLFEHPN--AKGRYICSS--HPATILELAKFLREKYPEFNV-PT------EFEDV---  283 (338)
Q Consensus       219 ~~~~~~~-~~~i~v~D~a~~~~~~l~~~~--~~~~~~~~~--~~~t~~e~~~~i~~~~~~~~~-~~------~~~~~---  283 (338)
                      .++.+.+ ++|+|++|+|++++.+++++.  .+++||+++  +.+|+.|+++.+.+.+|.... +.      .....   
T Consensus       249 ~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~  328 (386)
T PLN02427        249 LVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVSGEPALEEPTVDVSSKEFY  328 (386)
T ss_pred             EECCCCceECcEeHHHHHHHHHHHHhCcccccCceEEeCCCCCCccHHHHHHHHHHHhccccccccccccccccCccccc
Confidence            2333333 789999999999999998753  355899865  489999999999998874211 10      01100   


Q ss_pred             ---cccccccccchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          284 ---DENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       284 ---~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                         .........|.+++++ |||+|+++++++|+++++|+++.
T Consensus       329 ~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~  371 (386)
T PLN02427        329 GEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKT  371 (386)
T ss_pred             CccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHH
Confidence               1233455678899987 99999999999999999998763

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=100.00  E-value=1.2e-42  Score=312.03  Aligned_cols=307  Identities=19%  Similarity=0.295  Sum_probs=221.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccC-CCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA-EEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~d~vi   82 (338)
                      ||+||||||+||||++|+++|+++ |++|++++|+......   +..    .++++++.+|++ +.+.+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~---~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD---LVN----HPRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH---hcc----CCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            478999999999999999999986 6999999986533221   111    146899999998 6677778888999999


Q ss_pred             EecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+.... .....+...++.|+.++.+++++|++.+  ++|||+||.++||.  ....+++|+++...  ..+...|.+
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~--~~~~~~~ee~~~~~--~~~~~~p~~  147 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGM--CPDEEFDPEASPLV--YGPINKPRW  147 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeecc--CCCcCcCccccccc--cCcCCCccc
Confidence            99986432 2223344778999999999999999877  69999999999983  22334555542110  001224678


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC------CChhHHHhh-hhcccCCCC-CCCCCC-CccccHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS------MPPSLITAL-SPITRNEAH-YPIIKQ-GQFVHLD  232 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~------~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~i~v~  232 (338)
                      .|+.+|.++|+.++.++++++++++++||+++|||+..+.      ....+...+ ....+.+.. +..+.+ ++|+|++
T Consensus       148 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~  227 (347)
T PRK11908        148 IYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDID  227 (347)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEecCCceeeccccHH
Confidence            9999999999999999988999999999999999985431      111121222 222344432 233333 7899999


Q ss_pred             HHHHHHHHhhcCCC---CCCceEEec--CCCCHHHHHHHHHHhCCCCC-C-----CCCCCCc---------ccccccccc
Q 040253          233 DLCSAHIFLFEHPN---AKGRYICSS--HPATILELAKFLREKYPEFN-V-----PTEFEDV---------DENMKNMLF  292 (338)
Q Consensus       233 D~a~~~~~~l~~~~---~~~~~~~~~--~~~t~~e~~~~i~~~~~~~~-~-----~~~~~~~---------~~~~~~~~~  292 (338)
                      |+++++..+++++.   .+++||+++  ..+|++|+++.+.+.++..+ .     +..+...         .........
T Consensus       228 D~a~a~~~~~~~~~~~~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (347)
T PRK11908        228 DGIDALMKIIENKDGVASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVP  307 (347)
T ss_pred             HHHHHHHHHHhCccccCCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhccCcCcchhccccC
Confidence            99999999998753   356899865  36999999999998876421 1     0111110         112223445


Q ss_pred             chhhhhh-cCCcccccHHHHHHHHHHHHHHcCC
Q 040253          293 SSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGL  324 (338)
Q Consensus       293 ~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~  324 (338)
                      |++++++ |||+|+++++++++++++|++++..
T Consensus       308 d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~  340 (347)
T PRK11908        308 KIDNTMQELGWAPKTTMDDALRRIFEAYRGHVA  340 (347)
T ss_pred             ChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            7777776 9999999999999999999987543

>PLN02206 UDP-glucuronate decarboxylase

Probab=100.00  E-value=1.9e-42  Score=316.66  Aligned_cols=302  Identities=22%  Similarity=0.254  Sum_probs=221.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH-HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK-KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..|+|||||||||||++|+++|+++|++|++++|..... ......    ...++++++.+|+.+.     ++.++|+||
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~----~~~~~~~~i~~D~~~~-----~l~~~D~Vi  188 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHH----FSNPNFELIRHDVVEP-----ILLEVDQIY  188 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhh----ccCCceEEEECCccCh-----hhcCCCEEE
Confidence            468999999999999999999999999999998753321 111111    1125688899998664     345799999


Q ss_pred             EecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+.... ....+...+++.|+.++.+|+++|++.+ + +|||+||..+|+  .....+.+|+.|...    .+..+.+
T Consensus       189 HlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g-~-r~V~~SS~~VYg--~~~~~p~~E~~~~~~----~P~~~~s  260 (442)
T PLN02206        189 HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG-A-RFLLTSTSEVYG--DPLQHPQVETYWGNV----NPIGVRS  260 (442)
T ss_pred             EeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC-C-EEEEECChHHhC--CCCCCCCCccccccC----CCCCccc
Confidence            99986542 2223445789999999999999999988 5 899999999997  333445666643211    1334577


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDLCSAH  238 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~  238 (338)
                      .|+.+|.++|+++..+++.++++++++||+++|||+........+...+ ....+.+. .++.+.+ ++|+|++|+|+++
T Consensus       261 ~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai  340 (442)
T PLN02206        261 CYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGL  340 (442)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHH
Confidence            9999999999999999888899999999999999985422111121111 22233333 3444443 7899999999999


Q ss_pred             HHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh-cCCcccccHHHHHHHH
Q 040253          239 IFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGA  315 (338)
Q Consensus       239 ~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~  315 (338)
                      +.++++. ..+.||++ ++.+|+.|+++.+.+.++.. ..+. .+...........|++++++ |||+|+++++|+|+++
T Consensus       341 ~~a~e~~-~~g~yNIgs~~~~sl~Elae~i~~~~g~~-~~i~~~p~~~~~~~~~~~d~sKa~~~LGw~P~~~l~egl~~~  418 (442)
T PLN02206        341 MRLMEGE-HVGPFNLGNPGEFTMLELAKVVQETIDPN-AKIEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLM  418 (442)
T ss_pred             HHHHhcC-CCceEEEcCCCceeHHHHHHHHHHHhCCC-CceeeCCCCCCCccccccCHHHHHHHcCCCCCCCHHHHHHHH
Confidence            9999865 46789985 58899999999999988631 1111 11222334456788999987 9999999999999999


Q ss_pred             HHHHHHcCC
Q 040253          316 VDTCRAKGL  324 (338)
Q Consensus       316 ~~~~~~~~~  324 (338)
                      ++|+++.-+
T Consensus       419 ~~~~~~~~~  427 (442)
T PLN02206        419 VKDFRQRVF  427 (442)
T ss_pred             HHHHHHhhh
Confidence            999987543

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=100.00  E-value=9.7e-43  Score=313.82  Aligned_cols=304  Identities=17%  Similarity=0.140  Sum_probs=223.9

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |.+..|+|||||||||||++++++|.++|++|++++|.......     ...   ...+++.+|++|.+.+.+++.++|+
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~-----~~~---~~~~~~~~Dl~d~~~~~~~~~~~D~   88 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS-----EDM---FCHEFHLVDLRVMENCLKVTKGVDH   88 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc-----ccc---ccceEEECCCCCHHHHHHHHhCCCE
Confidence            34457899999999999999999999999999999986432110     000   1357889999999888888889999


Q ss_pred             EEEecccCCCC--CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCC--CCCcCCCCCCchhhhhhc
Q 040253           81 VFHLATPMDFE--SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHR--KPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        81 vi~~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~--~~~~~e~~~~~~~~~~~~  156 (338)
                      |||+|+.....  ...........|+.++.+|+++|++.+ +++|||+||.++|+.....  ..++.|++.       .+
T Consensus        89 Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~-vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~-------~p  160 (370)
T PLN02695         89 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARING-VKRFFYASSACIYPEFKQLETNVSLKESDA-------WP  160 (370)
T ss_pred             EEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhC-CCEEEEeCchhhcCCccccCcCCCcCcccC-------CC
Confidence            99999865311  111223567889999999999999988 8999999999999733211  113444431       13


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC-----ChhHHHhhhhcccCC-CCCCCCCC-Cccc
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM-----PPSLITALSPITRNE-AHYPIIKQ-GQFV  229 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~-~~~i  229 (338)
                      ..|.+.|+.+|..+|.+++.+++++|++++++||+++|||+.....     ...+...... .+.. ..++.+.+ ++|+
T Consensus       161 ~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~g~g~~~r~~i  239 (370)
T PLN02695        161 AEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALT-STDEFEMWGDGKQTRSFT  239 (370)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHc-CCCCeEEeCCCCeEEeEE
Confidence            4578899999999999999999888999999999999999753211     1122111110 1122 23344443 7899


Q ss_pred             cHHHHHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhh-cCCccccc
Q 040253          230 HLDDLCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTD-LGFKFKYS  307 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~~~~~~  307 (338)
                      |++|+++++.++++.. .+++||++ ++.+|++|+++.+.+..|. +.+......+........|++++++ |||+|+++
T Consensus       240 ~v~D~a~ai~~~~~~~-~~~~~nv~~~~~~s~~el~~~i~~~~g~-~~~i~~~~~~~~~~~~~~d~sk~~~~lgw~p~~~  317 (370)
T PLN02695        240 FIDECVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEIALSFENK-KLPIKHIPGPEGVRGRNSDNTLIKEKLGWAPTMR  317 (370)
T ss_pred             eHHHHHHHHHHHHhcc-CCCceEecCCCceeHHHHHHHHHHHhCC-CCCceecCCCCCccccccCHHHHHHhcCCCCCCC
Confidence            9999999999988764 46789985 5789999999999988774 2333222222223345689999997 99999999


Q ss_pred             HHHHHHHHHHHHHHcC
Q 040253          308 LDDMFTGAVDTCRAKG  323 (338)
Q Consensus       308 ~~~~i~~~~~~~~~~~  323 (338)
                      ++++|+++++|+++.-
T Consensus       318 l~e~i~~~~~~~~~~~  333 (370)
T PLN02695        318 LKDGLRITYFWIKEQI  333 (370)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998653

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=100.00  E-value=2.2e-42  Score=309.82  Aligned_cols=302  Identities=17%  Similarity=0.191  Sum_probs=225.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcC--CCCCCcEEEEecccCCCCCchhhhC--Ccc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLEL--PKASTHLTLWKADLAEEGNFDEPIR--GCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d   79 (338)
                      |+||||||+||||++++++|+++|++|++++|+++.  ......+...  .....+++++.+|++|.+.+.++++  ++|
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d   80 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT   80 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999997642  1222222110  0011468999999999999999988  479


Q ss_pred             EEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCc---cEEEEecCceeeeccCCCCCCcCCCCCCchhhhhh
Q 040253           80 GVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTV---RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRS  155 (338)
Q Consensus        80 ~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~  155 (338)
                      +|||+|+..... .........+.|+.++.+++++|+..+ +   ++|||+||.++||  .....+.+|+.         
T Consensus        81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~-~~~~~~~v~~SS~~vyg--~~~~~~~~E~~---------  148 (343)
T TIGR01472        81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG-LIKSVKFYQASTSELYG--KVQEIPQNETT---------  148 (343)
T ss_pred             EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC-CCcCeeEEEeccHHhhC--CCCCCCCCCCC---------
Confidence            999999975422 112234667889999999999999876 3   4899999999998  33334567776         


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC-CChhHHHhhh-hcccCC--CCCCCCCC-Ccccc
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS-MPPSLITALS-PITRNE--AHYPIIKQ-GQFVH  230 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~-~~~~~~--~~~~~~~~-~~~i~  230 (338)
                      +..|.++|+.||.++|.+++.+++++++++++.|+.++|||+.... ....+...+. ...+..  ..++.+.+ ++|+|
T Consensus       149 ~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~  228 (343)
T TIGR01472       149 PFYPRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGH  228 (343)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceeeCCCccccCcee
Confidence            4457889999999999999999998899999999999999975432 2222222221 222332  22344433 88999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCC-------------------CC---CCccccc
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPT-------------------EF---EDVDENM  287 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~-------------------~~---~~~~~~~  287 (338)
                      ++|+|++++.+++++. .+.||+ +++++|++|+++.+.+.+|.. .+.                   .+   ...+...
T Consensus       229 V~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (343)
T TIGR01472       229 AKDYVEAMWLMLQQDK-PDDYVIATGETHSVREFVEVSFEYIGKT-LNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEV  306 (343)
T ss_pred             HHHHHHHHHHHHhcCC-CccEEecCCCceeHHHHHHHHHHHcCCC-cccccccccccccccccCceeEEeCccccCCCcc
Confidence            9999999999998753 468998 568899999999999988731 110                   00   1123344


Q ss_pred             cccccchhhhhh-cCCcccccHHHHHHHHHHHHHH
Q 040253          288 KNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRA  321 (338)
Q Consensus       288 ~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~  321 (338)
                      .....|++++++ |||+|+++++|+|++++++|++
T Consensus       307 ~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~  341 (343)
T TIGR01472       307 DLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE  341 (343)
T ss_pred             chhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence            555679999987 9999999999999999999974

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=100.00  E-value=1.9e-42  Score=310.82  Aligned_cols=303  Identities=22%  Similarity=0.221  Sum_probs=227.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      +|+||||||+||||++++++|+++|++|++++|+.............   ..+++++.+|++|.+++.++++  ++|+||
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi   80 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL---AKKIEDHFGDIRDAAKLRKAIAEFKPEIVF   80 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh---cCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999999999999999999976654332211111   1357889999999999998887  479999


Q ss_pred             EecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+.... .........+++|+.++.+++++++..+.+++||++||.++|+.. ....+++|++         +..|.+
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~-~~~~~~~e~~---------~~~p~~  150 (349)
T TIGR02622        81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRND-EWVWGYRETD---------PLGGHD  150 (349)
T ss_pred             ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCC-CCCCCCccCC---------CCCCCC
Confidence            99985432 222334578899999999999999876546799999999999732 1123466665         345788


Q ss_pred             hHHHHHHHHHHHHHHHHHHc-------CccEEEEcCCceeCCCCCCC--CChhHHHhhhhcccCCCCCCCCCC-CccccH
Q 040253          162 MYFVSKTLAEQAAWKFAEEN-------NIDFISIIPSLVVGPFLTSS--MPPSLITALSPITRNEAHYPIIKQ-GQFVHL  231 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~-------~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v  231 (338)
                      +|+.+|.++|.+++.+++++       +++++++||+++|||+....  +...+.  .....+....++.+.+ ++|+|+
T Consensus       151 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~--~~~~~g~~~~~~~g~~~rd~i~v  228 (349)
T TIGR02622       151 PYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVI--RAFSSNKIVIIRNPDATRPWQHV  228 (349)
T ss_pred             cchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHH--HHHhcCCCeEECCCCcccceeeH
Confidence            99999999999999988764       89999999999999975321  111111  1222344444444433 789999


Q ss_pred             HHHHHHHHHhhcCC-----CCCCceEEec---CCCCHHHHHHHHHHhCCCCCCCCCCC---Cccccccccccchhhhhh-
Q 040253          232 DDLCSAHIFLFEHP-----NAKGRYICSS---HPATILELAKFLREKYPEFNVPTEFE---DVDENMKNMLFSSKKLTD-  299 (338)
Q Consensus       232 ~D~a~~~~~~l~~~-----~~~~~~~~~~---~~~t~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-  299 (338)
                      +|++++++.++++.     ..++.||+++   +++|+.|+++.+.+.++..++.....   ..+........|++++++ 
T Consensus       229 ~D~a~a~~~~~~~~~~~~~~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~  308 (349)
T TIGR02622       229 LEPLSGYLLLAEKLFTGQAEFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTL  308 (349)
T ss_pred             HHHHHHHHHHHHHHhhcCccccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHH
Confidence            99999999887642     2356899963   68999999999998876443332221   223445567789999987 


Q ss_pred             cCCcccccHHHHHHHHHHHHHHc
Q 040253          300 LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       300 lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      |||+|+++++++|+++++|+++.
T Consensus       309 lgw~p~~~l~~gi~~~i~w~~~~  331 (349)
T TIGR02622       309 LGWHPRWGLEEAVSRTVDWYKAW  331 (349)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999865

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02572 UDP-sulfoquinovose synthase

Probab=100.00  E-value=2.7e-42  Score=316.51  Aligned_cols=317  Identities=17%  Similarity=0.152  Sum_probs=224.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH-----------------HHHHHHhcCCCCCCcEEEEecccC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK-----------------KKVKHLLELPKASTHLTLWKADLA   66 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~Dl~   66 (338)
                      ++|+||||||+||||++|+++|+++|++|++++|.....                 ..+..+...  ...+++++.+|++
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~~v~~Dl~  123 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV--SGKEIELYVGDIC  123 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh--hCCcceEEECCCC
Confidence            478999999999999999999999999999987532110                 111111100  0136899999999


Q ss_pred             CCCCchhhhC--CccEEEEecccCCCC--CCCc--cchhhhhhhHHHHHHHHHHHhCCCcc-EEEEecCceeeeccCCCC
Q 040253           67 EEGNFDEPIR--GCTGVFHLATPMDFE--SKDP--ENEVIRPTINGMVSIMRACKNAKTVR-RLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        67 d~~~~~~~~~--~~d~vi~~a~~~~~~--~~~~--~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~Ss~~v~~~~~~~~  139 (338)
                      |.+.+.++++  ++|+|||+|+.....  ..++  ....++.|+.++.+++++|+..+ ++ +||++||..+||..  . 
T Consensus       124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g-v~~~~V~~SS~~vYG~~--~-  199 (442)
T PLN02572        124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA-PDCHLVKLGTMGEYGTP--N-  199 (442)
T ss_pred             CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC-CCccEEEEecceecCCC--C-
Confidence            9999999887  589999999764321  1111  23457899999999999999988 64 89999999999832  1 


Q ss_pred             CCcCCCCCCc-----hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC------------
Q 040253          140 PVYDETSWSD-----LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM------------  202 (338)
Q Consensus       140 ~~~~e~~~~~-----~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------------  202 (338)
                      .+++|.....     .+....+..|.++|+.+|.++|.+++.+++.+|++++++||+++|||++....            
T Consensus       200 ~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~  279 (442)
T PLN02572        200 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYD  279 (442)
T ss_pred             CCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcc
Confidence            2233321100     00000134578899999999999999999999999999999999999864310            


Q ss_pred             ---ChhHHH-hhhhcccCCC-CCCCCCC-CccccHHHHHHHHHHhhcCCCC-C--CceEEecCCCCHHHHHHHHHHh---
Q 040253          203 ---PPSLIT-ALSPITRNEA-HYPIIKQ-GQFVHLDDLCSAHIFLFEHPNA-K--GRYICSSHPATILELAKFLREK---  270 (338)
Q Consensus       203 ---~~~~~~-~~~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~~~~l~~~~~-~--~~~~~~~~~~t~~e~~~~i~~~---  270 (338)
                         ...+.. ......+++. .++.+.+ ++|+||+|++++++.++++... +  .+||++++.+|+.|+++.+.+.   
T Consensus       280 ~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~~~~  359 (442)
T PLN02572        280 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGEK  359 (442)
T ss_pred             cchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHHHHh
Confidence               011111 1222334443 3455544 7899999999999999986533 3  3688877889999999999998   


Q ss_pred             CCCCCCCCCCCC---ccccccccccchhhhhhcCCcccc---cHHHHHHHHHHHHHHcCCCCC
Q 040253          271 YPEFNVPTEFED---VDENMKNMLFSSKKLTDLGFKFKY---SLDDMFTGAVDTCRAKGLLPL  327 (338)
Q Consensus       271 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~lg~~~~~---~~~~~i~~~~~~~~~~~~~~~  327 (338)
                      +|. +++.....   .+........|.+++++|||+|++   +++++|.+++.||+++-..+.
T Consensus       360 ~g~-~~~~~~~p~~~~~~~~~~~~~d~~k~~~LGw~p~~~~~~l~~~l~~~~~~~~~~~~~~~  421 (442)
T PLN02572        360 LGL-DVEVISVPNPRVEAEEHYYNAKHTKLCELGLEPHLLSDSLLDSLLNFAVKYKDRVDTTL  421 (442)
T ss_pred             hCC-CCCeeeCCCCcccccccccCccHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHhhcchhh
Confidence            663 22222111   122333556788899889999999   899999999999986655443

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=100.00  E-value=3e-42  Score=331.94  Aligned_cols=311  Identities=20%  Similarity=0.288  Sum_probs=228.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC-chhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN-FDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~d~v   81 (338)
                      .+|+|||||||||||++|+++|++. |++|++++|.+......   ..    .++++++.+|++|... +.++++++|+|
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~---~~----~~~~~~~~gDl~d~~~~l~~~l~~~D~V  386 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRF---LG----HPRFHFVEGDISIHSEWIEYHIKKCDVV  386 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhh---cC----CCceEEEeccccCcHHHHHHHhcCCCEE
Confidence            3689999999999999999999985 79999999976432211   11    1468999999999765 56778899999


Q ss_pred             EEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      ||+|+.... .........++.|+.++.+++++|++.+  ++|||+||.++||  .....+++|+++...  ..+...|.
T Consensus       387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS~~vyg--~~~~~~~~E~~~~~~--~~p~~~p~  460 (660)
T PRK08125        387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPSTSEVYG--MCTDKYFDEDTSNLI--VGPINKQR  460 (660)
T ss_pred             EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcchhhcC--CCCCCCcCccccccc--cCCCCCCc
Confidence            999986542 1222334678999999999999999987  6899999999998  333456777764311  11122466


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC------ChhHHH-hhhhcccCCC-CCCCCCC-CccccH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM------PPSLIT-ALSPITRNEA-HYPIIKQ-GQFVHL  231 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~-~~~~~~~~~~-~~~~~~~-~~~i~v  231 (338)
                      +.|+.+|.++|.+++.+++.+|++++++||+++|||+.....      ...+.. ......+.+. .++.+.+ ++|+|+
T Consensus       461 s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v  540 (660)
T PRK08125        461 WIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDI  540 (660)
T ss_pred             cchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeH
Confidence            789999999999999999888999999999999999854210      111111 1222234433 2334333 789999


Q ss_pred             HHHHHHHHHhhcCCC---CCCceEEec-C-CCCHHHHHHHHHHhCCCCCCCCCCCCc---------------cccccccc
Q 040253          232 DDLCSAHIFLFEHPN---AKGRYICSS-H-PATILELAKFLREKYPEFNVPTEFEDV---------------DENMKNML  291 (338)
Q Consensus       232 ~D~a~~~~~~l~~~~---~~~~~~~~~-~-~~t~~e~~~~i~~~~~~~~~~~~~~~~---------------~~~~~~~~  291 (338)
                      +|++++++.++++..   .+++||+++ + .+|++|+++.+.+.+|........+..               ........
T Consensus       541 ~Dva~a~~~~l~~~~~~~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  620 (660)
T PRK08125        541 RDGIEALFRIIENKDNRCDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHRK  620 (660)
T ss_pred             HHHHHHHHHHHhccccccCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccccccccccccccccC
Confidence            999999999998753   245899865 3 699999999999998742221111100               11233445


Q ss_pred             cchhhhhh-cCCcccccHHHHHHHHHHHHHHcCCCCC
Q 040253          292 FSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGLLPL  327 (338)
Q Consensus       292 ~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~~~~  327 (338)
                      .|++++++ |||+|+++++++|+++++|+++...+.+
T Consensus       621 ~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~~~  657 (660)
T PRK08125        621 PSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDLTE  657 (660)
T ss_pred             CChHHHHHHhCCCCCCcHHHHHHHHHHHHHhcccccc
Confidence            78889987 9999999999999999999998876653

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=100.00  E-value=1.5e-41  Score=305.73  Aligned_cols=302  Identities=19%  Similarity=0.237  Sum_probs=221.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCCC--cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPD--NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      |+||||||+||||++++++|+++|++ |+++++...  .......+.    ...+++++.+|++|.+++.++++  ++|+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   76 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVS----DSERYVFEHADICDRAELDRIFAQHQPDA   76 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcc----cCCceEEEEecCCCHHHHHHHHHhcCCCE
Confidence            58999999999999999999999975 555554321  111111111    01457889999999999999886  5899


Q ss_pred             EEEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhC--------CCccEEEEecCceeeeccCC--------CCCCcC
Q 040253           81 VFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNA--------KTVRRLVFTSSAGTLDVEEH--------RKPVYD  143 (338)
Q Consensus        81 vi~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~~~v~~Ss~~v~~~~~~--------~~~~~~  143 (338)
                      |||+|+.... ......+.++++|+.++.+++++|++.        +.+++|||+||.++|+....        ..++++
T Consensus        77 vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~  156 (352)
T PRK10084         77 VMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFT  156 (352)
T ss_pred             EEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcc
Confidence            9999986542 112334578999999999999999874        12568999999999973211        012355


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC-CChhHHHhhhhcccCC-CCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS-MPPSLITALSPITRNE-AHYP  221 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~-~~~~  221 (338)
                      |++         +..|.+.|+.+|.++|.+++.++++++++++++|++++|||+.... +...+  ......+.. ..++
T Consensus       157 E~~---------~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~--~~~~~~~~~~~~~~  225 (352)
T PRK10084        157 ETT---------AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLV--ILNALEGKPLPIYG  225 (352)
T ss_pred             ccC---------CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHH--HHHHhcCCCeEEeC
Confidence            655         4457889999999999999999988999999999999999985322 11111  112222333 2334


Q ss_pred             CCCC-CccccHHHHHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC---------CCCcccccccc
Q 040253          222 IIKQ-GQFVHLDDLCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE---------FEDVDENMKNM  290 (338)
Q Consensus       222 ~~~~-~~~i~v~D~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~  290 (338)
                      .+.+ ++|+|++|+++++..+++....+++||++ ++++|++|+++.+++.++.. .|..         ....+......
T Consensus       226 ~g~~~~~~v~v~D~a~a~~~~l~~~~~~~~yni~~~~~~s~~~~~~~i~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~  304 (352)
T PRK10084        226 KGDQIRDWLYVEDHARALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEI-VPKATSYREQITYVADRPGHDRRY  304 (352)
T ss_pred             CCCeEEeeEEHHHHHHHHHHHHhcCCCCceEEeCCCCcCcHHHHHHHHHHHhccc-cccccchhhhccccccCCCCCcee
Confidence            4433 78999999999999999876567799985 57899999999999988742 1111         11123333455


Q ss_pred             ccchhhhhh-cCCcccccHHHHHHHHHHHHHHcC
Q 040253          291 LFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       291 ~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      .+|++++++ |||+|+++++++|+++++|++++.
T Consensus       305 ~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~  338 (352)
T PRK10084        305 AIDASKISRELGWKPQETFESGIRKTVEWYLANT  338 (352)
T ss_pred             eeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCH
Confidence            789999987 999999999999999999998863

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=100.00  E-value=2.7e-41  Score=302.51  Aligned_cols=307  Identities=16%  Similarity=0.160  Sum_probs=229.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcC-CCCCCcEEEEecccCCCCCchhhhC--Cc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLEL-PKASTHLTLWKADLAEEGNFDEPIR--GC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~--~~   78 (338)
                      .+|+||||||+||||++++++|+++|++|++++|+++.  ...++.+... .....+++++.+|++|.+.+.++++  ++
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   84 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIKP   84 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999986542  1222222110 0111468999999999999988887  47


Q ss_pred             cEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCcc-----EEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           79 TGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVR-----RLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        79 d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      |+|||+|+..... ........++.|+.++.+++++++..+ ++     +||++||.++||..  . .+++|+.      
T Consensus        85 d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~~~~~~~~~v~~Ss~~vyg~~--~-~~~~E~~------  154 (340)
T PLN02653         85 DEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHG-QETGRQIKYYQAGSSEMYGST--P-PPQSETT------  154 (340)
T ss_pred             CEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhc-cccccceeEEEeccHHHhCCC--C-CCCCCCC------
Confidence            9999999975422 123334667899999999999999887 43     89999999999832  2 2667776      


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-hhHHHhh-hhcccCCC-CC-CCCCC-Cc
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-PSLITAL-SPITRNEA-HY-PIIKQ-GQ  227 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~~-~~-~~~~~-~~  227 (338)
                         +..|.+.|+.+|.++|.+++.++++++++++..|+.++|||+....+. ..+...+ ....+.+. .+ +.+.+ ++
T Consensus       155 ---~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd  231 (340)
T PLN02653        155 ---PFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFLGNLDASRD  231 (340)
T ss_pred             ---CCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEeCCCcceec
Confidence               445788999999999999999999999999999999999997544322 2222212 11223332 22 33333 78


Q ss_pred             cccHHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCC-CCCCCCC---Cccccccccccchhhhhh-cC
Q 040253          228 FVHLDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEF-NVPTEFE---DVDENMKNMLFSSKKLTD-LG  301 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~-lg  301 (338)
                      |+|++|+|++++.++++.. ++.||+ +++++|++|+++.+.+.+|.. ..+..+.   ..+........|++++++ ||
T Consensus       232 ~i~v~D~a~a~~~~~~~~~-~~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg  310 (340)
T PLN02653        232 WGFAGDYVEAMWLMLQQEK-PDDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLG  310 (340)
T ss_pred             ceeHHHHHHHHHHHHhcCC-CCcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhC
Confidence            9999999999999998753 578988 568899999999999998742 1111111   124455566789999987 99


Q ss_pred             CcccccHHHHHHHHHHHHHHcCC
Q 040253          302 FKFKYSLDDMFTGAVDTCRAKGL  324 (338)
Q Consensus       302 ~~~~~~~~~~i~~~~~~~~~~~~  324 (338)
                      |+|+++++|+|+++++|+++.-.
T Consensus       311 w~p~~~l~~gi~~~~~~~~~~~~  333 (340)
T PLN02653        311 WKPKVGFEQLVKMMVDEDLELAK  333 (340)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcC
Confidence            99999999999999999986544

>PLN02240 UDP-glucose 4-epimerase

Probab=100.00  E-value=7e-41  Score=301.52  Aligned_cols=311  Identities=19%  Similarity=0.277  Sum_probs=229.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-HHHHHhcCC-CCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLELP-KASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |++++++|+|||||||||++++++|+++|++|++++|...... ....+.... ....+++++.+|++|++.+.++++  
T Consensus         1 ~~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~   80 (352)
T PLN02240          1 MSLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST   80 (352)
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence            7777899999999999999999999999999999987543221 111111111 012468899999999999988886  


Q ss_pred             CccEEEEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhh
Q 040253           77 GCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRS  155 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~  155 (338)
                      ++|+|||+|+.... .........++.|+.++.++++++++.+ +++||++||..+|+  .....+++|+.         
T Consensus        81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~vyg--~~~~~~~~E~~---------  148 (352)
T PLN02240         81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHG-CKKLVFSSSATVYG--QPEEVPCTEEF---------  148 (352)
T ss_pred             CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEccHHHhC--CCCCCCCCCCC---------
Confidence            68999999986432 1223345789999999999999999888 88999999999997  33455678876         


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHH-cCccEEEEcCCceeCCCCCC-------CCChhHHHhh-hhcccCCC---CC---
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEE-NNIDFISIIPSLVVGPFLTS-------SMPPSLITAL-SPITRNEA---HY---  220 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~-~~~~~~~~---~~---  220 (338)
                      +..|.+.|+.+|.++|.+++.++.. .+++++++|++++||++...       .....+...+ ....+...   .+   
T Consensus       149 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  228 (352)
T PLN02240        149 PLSATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGND  228 (352)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCC
Confidence            4457789999999999999988765 58999999999999975321       1111221111 11122211   11   


Q ss_pred             ---CCCCC-CccccHHHHHHHHHHhhcCC----CC-CCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccc
Q 040253          221 ---PIIKQ-GQFVHLDDLCSAHIFLFEHP----NA-KGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-EDVDENMKN  289 (338)
Q Consensus       221 ---~~~~~-~~~i~v~D~a~~~~~~l~~~----~~-~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~  289 (338)
                         +.+.+ ++|+|++|+|++++.++++.    .. +++||+ +++++|++|+++.+.+.++. +.+... ...+.....
T Consensus       229 ~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~  307 (352)
T PLN02240        229 YPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASGK-KIPLKLAPRRPGDAEE  307 (352)
T ss_pred             CCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEccCCCcEeHHHHHHHHHHHhCC-CCCceeCCCCCCChhh
Confidence               12333 78999999999999888642    22 468998 57889999999999999874 333322 222334445


Q ss_pred             cccchhhhhh-cCCcccccHHHHHHHHHHHHHHcCC
Q 040253          290 MLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGL  324 (338)
Q Consensus       290 ~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~  324 (338)
                      ...|++++++ |||+|+++++++|+++++|+++++.
T Consensus       308 ~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~  343 (352)
T PLN02240        308 VYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPY  343 (352)
T ss_pred             hhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcc
Confidence            5678899987 9999999999999999999998764

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=100.00  E-value=4.6e-41  Score=325.33  Aligned_cols=308  Identities=18%  Similarity=0.222  Sum_probs=227.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--CCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--RGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d   79 (338)
                      .+|+|||||||||||++++++|+++  +++|++++|..... ....+.... ..++++++.+|++|.+.+.+++  .++|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~-~~~~l~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCS-NLKNLNPSK-SSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccc-hhhhhhhcc-cCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            4689999999999999999999988  68999988753111 111111110 1257899999999988877765  4899


Q ss_pred             EEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCC-CCcCCCCCCchhhhhhcc
Q 040253           80 GVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRK-PVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        80 ~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~-~~~~e~~~~~~~~~~~~~  157 (338)
                      +|||+|+..... ......++++.|+.++.+|+++++..+.+++|||+||..+||...... ...+|++         +.
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~---------~~  153 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEAS---------QL  153 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccC---------CC
Confidence            999999976532 122334788999999999999999876578999999999998332111 1123443         34


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCC-CCCCCCC-CccccHHHH
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEA-HYPIIKQ-GQFVHLDDL  234 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~v~D~  234 (338)
                      .|.+.|+.+|..+|.+++.+.++++++++++||+++|||+..... ...+.  .....+.+. .++.+.+ ++|+|++|+
T Consensus       154 ~p~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~--~~a~~g~~i~i~g~g~~~r~~ihV~Dv  231 (668)
T PLN02260        154 LPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFI--LLAMQGKPLPIHGDGSNVRSYLYCEDV  231 (668)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHH--HHHhCCCCeEEecCCCceEeeEEHHHH
Confidence            477899999999999999999888999999999999999864321 11111  112223332 2333433 789999999


Q ss_pred             HHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCC-CC-CCCccccccccccchhhhhhcCCcccccHHHH
Q 040253          235 CSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVP-TE-FEDVDENMKNMLFSSKKLTDLGFKFKYSLDDM  311 (338)
Q Consensus       235 a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~  311 (338)
                      |+++..++++...+++||++ ++.+|+.|+++.+.+.+|..... .. ....+........|++++++|||+|+++++|+
T Consensus       232 a~a~~~~l~~~~~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~~lGw~p~~~~~eg  311 (668)
T PLN02260        232 AEAFEVVLHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLKKLGWQERTSWEEG  311 (668)
T ss_pred             HHHHHHHHhcCCCCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHHHcCCCCCCCHHHH
Confidence            99999999877667899985 57899999999999998742211 11 11223334455689999988999999999999


Q ss_pred             HHHHHHHHHHcCC
Q 040253          312 FTGAVDTCRAKGL  324 (338)
Q Consensus       312 i~~~~~~~~~~~~  324 (338)
                      |+++++|+++++.
T Consensus       312 l~~~i~w~~~~~~  324 (668)
T PLN02260        312 LKKTMEWYTSNPD  324 (668)
T ss_pred             HHHHHHHHHhChh
Confidence            9999999998755

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=2.7e-41  Score=275.16  Aligned_cols=301  Identities=20%  Similarity=0.241  Sum_probs=237.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|+||||+||||+||++.|...|++|++++--...... +...    ..+++++.+.-|+..+     ++..+|.|+
T Consensus        26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~----~~~~~fel~~hdv~~p-----l~~evD~Iy   96 (350)
T KOG1429|consen   26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHW----IGHPNFELIRHDVVEP-----LLKEVDQIY   96 (350)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchh----ccCcceeEEEeechhH-----HHHHhhhhh
Confidence            46899999999999999999999999999999852222111 1111    1236778888777544     788999999


Q ss_pred             EecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|++.+ ......+-.++..|+.++.+.+-.|++.+  +||++.||+.|||  .+...+..|+.|.+-    .+..|..
T Consensus        97 hLAapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aSTseVYg--dp~~hpq~e~ywg~v----npigpr~  168 (350)
T KOG1429|consen   97 HLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLASTSEVYG--DPLVHPQVETYWGNV----NPIGPRS  168 (350)
T ss_pred             hhccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEeecccccC--CcccCCCcccccccc----CcCCchh
Confidence            9998765 22334445889999999999999999988  8999999999998  555566667666543    2556888


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHh-hhhcccCC-CCCCCCCC-CccccHHHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITA-LSPITRNE-AHYPIIKQ-GQFVHLDDLCSAH  238 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~i~v~D~a~~~  238 (338)
                      -|+..|..+|.++..|.++.|+.+.|.|+++.|||...-.-...+... ..+..+.+ ..++++.+ ++|+||+|+++++
T Consensus       169 cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegl  248 (350)
T KOG1429|consen  169 CYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGL  248 (350)
T ss_pred             hhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHH
Confidence            999999999999999999999999999999999998654333222222 23344555 45666666 7799999999999


Q ss_pred             HHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhh-cCCcccccHHHHHHHHH
Q 040253          239 IFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAV  316 (338)
Q Consensus       239 ~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~  316 (338)
                      +.+++++... -+|+ +++-+|+.|+|+++.+..+....+......+++......|.+++++ |||.|+.+|+|+++.++
T Consensus       249 l~Lm~s~~~~-pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~t~  327 (350)
T KOG1429|consen  249 LRLMESDYRG-PVNIGNPGEFTMLELAEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKVSLREGLPLTV  327 (350)
T ss_pred             HHHhcCCCcC-CcccCCccceeHHHHHHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCCcHHHhhHHHH
Confidence            9999987544 4776 5688999999999999987655656666667888888899999998 99999999999999999


Q ss_pred             HHHHHc
Q 040253          317 DTCRAK  322 (338)
Q Consensus       317 ~~~~~~  322 (338)
                      .|++++
T Consensus       328 ~~fr~~  333 (350)
T KOG1429|consen  328 TYFRER  333 (350)
T ss_pred             HHHHHH
Confidence            999864

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=100.00  E-value=1.1e-40  Score=294.59  Aligned_cols=286  Identities=16%  Similarity=0.195  Sum_probs=204.7

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCc----hhhh-----CCc
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNF----DEPI-----RGC   78 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~----~~~~-----~~~   78 (338)
                      ||||||+||||++|+++|+++|++++++.|+........            ....+|+.|..+.    .+++     .++
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   69 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV------------NLVDLDIADYMDKEDFLAQIMAGDDFGDI   69 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHHH------------hhhhhhhhhhhhHHHHHHHHhcccccCCc
Confidence            899999999999999999999998777777654321111            1233455554322    2233     268


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      |+|||+|+.......+ ....++.|+.++.+|+++|++.+ + +|||+||.++|+.  ....+.+|+.         +..
T Consensus        70 d~Vih~A~~~~~~~~~-~~~~~~~n~~~t~~ll~~~~~~~-~-~~i~~SS~~vyg~--~~~~~~~E~~---------~~~  135 (308)
T PRK11150         70 EAIFHEGACSSTTEWD-GKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYGG--RTDDFIEERE---------YEK  135 (308)
T ss_pred             cEEEECceecCCcCCC-hHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEcchHHhCc--CCCCCCccCC---------CCC
Confidence            9999999865433222 34678999999999999999988 6 6999999999983  3333566665         445


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC--CChhHHHhh-hhcccCCC-CCCC-CC-CCccccHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS--MPPSLITAL-SPITRNEA-HYPI-IK-QGQFVHLD  232 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~-~~~~~~~~-~~~~-~~-~~~~i~v~  232 (338)
                      |.+.|+.+|.++|+.++.++.+++++++++||+++|||+....  +........ ....+... .+.. +. .++|+|++
T Consensus       136 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~  215 (308)
T PRK11150        136 PLNVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVG  215 (308)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHH
Confidence            7789999999999999999888899999999999999986432  221221111 22233322 2322 22 37899999


Q ss_pred             HHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-CCCc--cccccccccchhhhhhcCCcccc-c
Q 040253          233 DLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-FEDV--DENMKNMLFSSKKLTDLGFKFKY-S  307 (338)
Q Consensus       233 D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~lg~~~~~-~  307 (338)
                      |++++++.++++. .+++||+ ++.++|+.|+++.+.+.++..++... .+..  .........|+++++++||+|+. +
T Consensus       216 D~a~a~~~~~~~~-~~~~yni~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~g~~p~~~~  294 (308)
T PRK11150        216 DVAAVNLWFWENG-VSGIFNCGTGRAESFQAVADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRAAGYDKPFKT  294 (308)
T ss_pred             HHHHHHHHHHhcC-CCCeEEcCCCCceeHHHHHHHHHHHhCCCcceeccCccccccccceecccCHHHHHhcCCCCCCCC
Confidence            9999999999874 4679998 55779999999999999874222111 1111  11123346799999999999874 8


Q ss_pred             HHHHHHHHHHHHH
Q 040253          308 LDDMFTGAVDTCR  320 (338)
Q Consensus       308 ~~~~i~~~~~~~~  320 (338)
                      ++++|+++++|+.
T Consensus       295 ~~~gl~~~~~~~~  307 (308)
T PRK11150        295 VAEGVAEYMAWLN  307 (308)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999975

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=100.00  E-value=6.7e-40  Score=292.40  Aligned_cols=300  Identities=28%  Similarity=0.404  Sum_probs=226.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|+||||+||||+++++.|+++|++|++++|+++......        ..+++++.+|++|.+++.++++++|+|||+|
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a   72 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLE--------GLDVEIVEGDLRDPASLRKAVAGCRALFHVA   72 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccc--------cCCceEEEeeCCCHHHHHHHHhCCCEEEEec
Confidence            58999999999999999999999999999999765432211        1368899999999999999999999999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +...... ......++.|+.++.++++++...+ +++||++||.++|+.. ....+++|+.+..      +..+.+.|+.
T Consensus        73 ~~~~~~~-~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~-~~~~~~~e~~~~~------~~~~~~~Y~~  143 (328)
T TIGR03466        73 ADYRLWA-PDPEEMYAANVEGTRNLLRAALEAG-VERVVYTSSVATLGVR-GDGTPADETTPSS------LDDMIGHYKR  143 (328)
T ss_pred             eecccCC-CCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEechhhcCcC-CCCCCcCccCCCC------cccccChHHH
Confidence            8654322 2345789999999999999999888 8899999999999732 2334667775211      1123568999


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      +|.++|+.++.++.+++++++++||+++||++........ ........+....+. +...+++|++|+|+++..++++.
T Consensus       144 sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~i~v~D~a~a~~~~~~~~  221 (328)
T TIGR03466       144 SKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTG-RIIVDFLNGKMPAYV-DTGLNLVHVDDVAEGHLLALERG  221 (328)
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHH-HHHHHHHcCCCceee-CCCcceEEHHHHHHHHHHHHhCC
Confidence            9999999999999888999999999999999864322211 011111112222121 22368999999999999999886


Q ss_pred             CCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCC-------------------ccc--------cccccccchhhhh
Q 040253          246 NAKGRYICSSHPATILELAKFLREKYPEFNVPTEFED-------------------VDE--------NMKNMLFSSKKLT  298 (338)
Q Consensus       246 ~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~-------------------~~~--------~~~~~~~~~~~~~  298 (338)
                      ..+..|+++++++|++|+++.+.+.+|........+.                   .+.        ......+|+++++
T Consensus       222 ~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~  301 (328)
T TIGR03466       222 RIGERYILGGENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAV  301 (328)
T ss_pred             CCCceEEecCCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHH
Confidence            6556788888899999999999999875321111110                   000        0124567899998


Q ss_pred             h-cCCcccccHHHHHHHHHHHHHHcCCC
Q 040253          299 D-LGFKFKYSLDDMFTGAVDTCRAKGLL  325 (338)
Q Consensus       299 ~-lg~~~~~~~~~~i~~~~~~~~~~~~~  325 (338)
                      + |||+|+ +++++|++++.|++++|++
T Consensus       302 ~~lg~~p~-~~~~~i~~~~~~~~~~~~~  328 (328)
T TIGR03466       302 RELGYRQR-PAREALRDAVEWFRANGYL  328 (328)
T ss_pred             HHcCCCCc-CHHHHHHHHHHHHHHhCCC
Confidence            7 999996 9999999999999998764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=100.00  E-value=7e-40  Score=290.83  Aligned_cols=301  Identities=17%  Similarity=0.203  Sum_probs=223.7

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCC--cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPD--NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTG   80 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~   80 (338)
                      +|||||||||||++++++|++.|  ++|++++|...  .......+..    .++++++.+|++|++++.+++++  +|+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~   76 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLED----NPRYRFVKGDIGDRELVSRLFTEHQPDA   76 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhcc----CCCcEEEEcCCcCHHHHHHHHhhcCCCE
Confidence            58999999999999999999987  78988876432  1222222111    14688999999999999999886  999


Q ss_pred             EEEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           81 VFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        81 vi~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      |||+|+.... ........+++.|+.++.++++++.+.+...++|++||..+|+.... ..+++|..         +..|
T Consensus        77 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~-~~~~~e~~---------~~~~  146 (317)
T TIGR01181        77 VVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEK-GDAFTETT---------PLAP  146 (317)
T ss_pred             EEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCC-CCCcCCCC---------CCCC
Confidence            9999987542 22233457889999999999999988752348999999999983222 22567765         3456


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCC-CCCCCCCC-CccccHHHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNE-AHYPIIKQ-GQFVHLDDLCS  236 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~i~v~D~a~  236 (338)
                      .+.|+.+|..+|.+++.++.+.+++++++||+.+|||......  .+...+ ....+.. ..++.+.+ ++|+|++|+++
T Consensus       147 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~  224 (317)
T TIGR01181       147 SSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPEK--LIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCR  224 (317)
T ss_pred             CCchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccc--HHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHH
Confidence            7899999999999999998888999999999999999754321  111111 1122333 22333333 78999999999


Q ss_pred             HHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhhhh-cCCcccccHHHHHH
Q 040253          237 AHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFT  313 (338)
Q Consensus       237 ~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~  313 (338)
                      ++..++++...+++||+ +++++|++|+++.+.+.+|........ ...+........|++++++ |||+|+++++++|+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~  304 (317)
T TIGR01181       225 AIYLVLEKGRVGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFEEGLR  304 (317)
T ss_pred             HHHHHHcCCCCCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHHHHHH
Confidence            99999987766779998 557899999999999999853221111 1122233344688899976 99999999999999


Q ss_pred             HHHHHHHHcC
Q 040253          314 GAVDTCRAKG  323 (338)
Q Consensus       314 ~~~~~~~~~~  323 (338)
                      ++++|+++++
T Consensus       305 ~~~~~~~~~~  314 (317)
T TIGR01181       305 KTVQWYLDNE  314 (317)
T ss_pred             HHHHHHHhcc
Confidence            9999998764

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=100.00  E-value=1.7e-39  Score=290.95  Aligned_cols=303  Identities=20%  Similarity=0.234  Sum_probs=221.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      |+||||||+||||++++++|+++|++|++++|....... ...+....  ..++.++.+|++|.+.+.++++  ++|+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv   78 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALLTEILHDHAIDTVI   78 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhc--CCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence            589999999999999999999999999998875332221 11111111  1356788999999998888876  699999


Q ss_pred             EecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+..... ......+.++.|+.++.+++++++..+ +++||++||.++|+  .....+++|+++        ...|.+
T Consensus        79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~yg--~~~~~~~~E~~~--------~~~p~~  147 (338)
T PRK10675         79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNLIFSSSATVYG--DQPKIPYVESFP--------TGTPQS  147 (338)
T ss_pred             ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHhhC--CCCCCccccccC--------CCCCCC
Confidence            999865421 122334788999999999999999988 88999999999997  334456777762        224678


Q ss_pred             hHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCC-------CChhHH-HhhhhcccCCC---C------CCCC
Q 040253          162 MYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSS-------MPPSLI-TALSPITRNEA---H------YPII  223 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~-------~~~~~~-~~~~~~~~~~~---~------~~~~  223 (338)
                      .|+.+|.++|++++.+++++ +++++++|++++||+.....       ....+. .......+...   .      ++.+
T Consensus       148 ~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  227 (338)
T PRK10675        148 PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG  227 (338)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCC
Confidence            99999999999999988764 89999999999999742211       111111 11111112111   1      1123


Q ss_pred             CC-CccccHHHHHHHHHHhhcCC--CC-CCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhh
Q 040253          224 KQ-GQFVHLDDLCSAHIFLFEHP--NA-KGRYICS-SHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKL  297 (338)
Q Consensus       224 ~~-~~~i~v~D~a~~~~~~l~~~--~~-~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  297 (338)
                      .+ ++|+|++|+|++++.+++..  .. +++||++ ++.+|++|+++.+.+.+|. +.+... +..+.......+|++++
T Consensus       228 ~~~~~~v~v~D~a~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~~~k~  306 (338)
T PRK10675        228 TGVRDYIHVMDLADGHVAAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGK-PVNYHFAPRREGDLPAYWADASKA  306 (338)
T ss_pred             cEEEeeEEHHHHHHHHHHHHHhhhccCCCceEEecCCCceeHHHHHHHHHHHhCC-CCCeeeCCCCCCchhhhhcCHHHH
Confidence            33 78999999999999999752  22 3589985 6789999999999999874 333322 22233345567899999


Q ss_pred             hh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          298 TD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       298 ~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ++ +||+|+++++++|+++++|++++
T Consensus       307 ~~~lg~~p~~~~~~~~~~~~~~~~~~  332 (338)
T PRK10675        307 DRELNWRVTRTLDEMAQDTWHWQSRH  332 (338)
T ss_pred             HHHhCCCCcCcHHHHHHHHHHHHHhh
Confidence            87 99999999999999999999875

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=100.00  E-value=7.6e-40  Score=289.24  Aligned_cols=284  Identities=19%  Similarity=0.214  Sum_probs=212.4

Q ss_pred             EEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEEecc
Q 040253            9 CVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFHLAT   86 (338)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~   86 (338)
                      ||||||||||++|+++|++.|++|+++.+.                      ..+|++|.+++.++++  ++|+|||+|+
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~   58 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH----------------------KELDLTRQADVEAFFAKEKPTYVILAAA   58 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc----------------------ccCCCCCHHHHHHHHhccCCCEEEEeee
Confidence            699999999999999999999988765432                      1479999998988876  5899999998


Q ss_pred             cCCC--CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc-hH
Q 040253           87 PMDF--ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW-MY  163 (338)
Q Consensus        87 ~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~-~Y  163 (338)
                      ....  ........+++.|+.++.+|+++|++.+ +++|||+||.+||+  .....+++|+++..     .+..|.+ .|
T Consensus        59 ~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~i~~SS~~vyg--~~~~~~~~E~~~~~-----~~~~p~~~~Y  130 (306)
T PLN02725         59 KVGGIHANMTYPADFIRENLQIQTNVIDAAYRHG-VKKLLFLGSSCIYP--KFAPQPIPETALLT-----GPPEPTNEWY  130 (306)
T ss_pred             eecccchhhhCcHHHHHHHhHHHHHHHHHHHHcC-CCeEEEeCceeecC--CCCCCCCCHHHhcc-----CCCCCCcchH
Confidence            6431  1223344788999999999999999998 88999999999998  33455677775321     1222433 59


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCC-----C-CChhHHHhh-hhcccCCCC--CCCCCC-CccccHHH
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTS-----S-MPPSLITAL-SPITRNEAH--YPIIKQ-GQFVHLDD  233 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-----~-~~~~~~~~~-~~~~~~~~~--~~~~~~-~~~i~v~D  233 (338)
                      +.+|.++|+.++.+.+.++++++++||+.+|||+...     . +...+.... ....+.+..  ++.+.+ ++|+|++|
T Consensus       131 ~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D  210 (306)
T PLN02725        131 AIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDD  210 (306)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHH
Confidence            9999999999999988889999999999999997532     1 111121111 112233322  333333 68999999


Q ss_pred             HHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhhhhcCCcccccHHHH
Q 040253          234 LCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKLTDLGFKFKYSLDDM  311 (338)
Q Consensus       234 ~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~  311 (338)
                      +++++..+++.....+.||++ +..+|+.|+++.+.+.++. +..... ...+.......+|+++++++||+|+++++++
T Consensus       211 v~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~  289 (306)
T PLN02725        211 LADAVVFLMRRYSGAEHVNVGSGDEVTIKELAELVKEVVGF-EGELVWDTSKPDGTPRKLMDSSKLRSLGWDPKFSLKDG  289 (306)
T ss_pred             HHHHHHHHHhccccCcceEeCCCCcccHHHHHHHHHHHhCC-CCceeecCCCCCcccccccCHHHHHHhCCCCCCCHHHH
Confidence            999999999876556788885 5789999999999998873 222211 1122223345678999988999999999999


Q ss_pred             HHHHHHHHHHcC
Q 040253          312 FTGAVDTCRAKG  323 (338)
Q Consensus       312 i~~~~~~~~~~~  323 (338)
                      |+++++|++++.
T Consensus       290 l~~~~~~~~~~~  301 (306)
T PLN02725        290 LQETYKWYLENY  301 (306)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998754

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=100.00  E-value=5.7e-39  Score=284.66  Aligned_cols=298  Identities=24%  Similarity=0.282  Sum_probs=228.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCc-cEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGC-TGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-d~vi~~   84 (338)
                      |+||||||+||||++|+++|+++|++|++++|.........         .++.++.+|++|.+...++.... |+|||+
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~   71 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL---------SGVEFVVLDLTDRDLVDELAKGVPDAVIHL   71 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc---------cccceeeecccchHHHHHHHhcCCCEEEEc
Confidence            35999999999999999999999999999999766543221         25788999999998777777777 999999


Q ss_pred             cccCCCCCCC--ccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           85 ATPMDFESKD--PENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        85 a~~~~~~~~~--~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      |+........  +...++..|+.++.+++++|++.+ +++|||.||.++|+.. ....+++|+.        .+..|.++
T Consensus        72 aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~~ss~~~~~~~-~~~~~~~E~~--------~~~~p~~~  141 (314)
T COG0451          72 AAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFASSVSVVYGD-PPPLPIDEDL--------GPPRPLNP  141 (314)
T ss_pred             cccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeCCCceECCC-CCCCCccccc--------CCCCCCCH
Confidence            9976633222  233589999999999999999977 8999998888888744 3344677772        13446669


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHH--hhhhcccCC-CCCC-CCCC-CccccHHHHHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLIT--ALSPITRNE-AHYP-IIKQ-GQFVHLDDLCSA  237 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~--~~~~~~~~~-~~~~-~~~~-~~~i~v~D~a~~  237 (338)
                      |+.+|+++|+.+..+.+.+|++++++||+++|||+........+..  ......+.+ ..+. .+.. ++++|++|++++
T Consensus       142 Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  221 (314)
T COG0451         142 YGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADA  221 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHH
Confidence            9999999999999999878999999999999999977653322221  111223443 2222 2232 579999999999


Q ss_pred             HHHhhcCCCCCCceEEec-C-CCCHHHHHHHHHHhCCCCCCCCCCC---Cccccccccccchhhhhh-cCCcccccHHHH
Q 040253          238 HIFLFEHPNAKGRYICSS-H-PATILELAKFLREKYPEFNVPTEFE---DVDENMKNMLFSSKKLTD-LGFKFKYSLDDM  311 (338)
Q Consensus       238 ~~~~l~~~~~~~~~~~~~-~-~~t~~e~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~  311 (338)
                      +..+++++... .||+++ . +.+++|+++.+.+.+|.........   ...........|..+.+. |||.|+++++++
T Consensus       222 ~~~~~~~~~~~-~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~  300 (314)
T COG0451         222 LLLALENPDGG-VFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEG  300 (314)
T ss_pred             HHHHHhCCCCc-EEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHH
Confidence            99999987767 999865 4 7999999999999987532211111   123344556778888875 999999899999


Q ss_pred             HHHHHHHHHHcC
Q 040253          312 FTGAVDTCRAKG  323 (338)
Q Consensus       312 i~~~~~~~~~~~  323 (338)
                      +.+++.|+....
T Consensus       301 i~~~~~~~~~~~  312 (314)
T COG0451         301 LADTLEWLLKKL  312 (314)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998654

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=100.00  E-value=1.5e-39  Score=285.39  Aligned_cols=272  Identities=15%  Similarity=0.096  Sum_probs=202.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |+||||||+||||++++++|+++| +|++++|..                   ..+.+|++|.+.+.++++  ++|+|||
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~-------------------~~~~~Dl~d~~~~~~~~~~~~~D~Vih   60 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS-------------------TDYCGDFSNPEGVAETVRKIRPDVIVN   60 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc-------------------ccccCCCCCHHHHHHHHHhcCCCEEEE
Confidence            589999999999999999999999 688888752                   124689999999998887  5899999


Q ss_pred             ecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      ||+..... ....++..+..|+.++.+|+++|+..+ + +|||+||.+||+  .....+++|++         +..|.+.
T Consensus        61 ~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~-~~v~~Ss~~Vy~--~~~~~p~~E~~---------~~~P~~~  127 (299)
T PRK09987         61 AAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-A-WVVHYSTDYVFP--GTGDIPWQETD---------ATAPLNV  127 (299)
T ss_pred             CCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEccceEEC--CCCCCCcCCCC---------CCCCCCH
Confidence            99976532 223344667899999999999999988 4 799999999997  33345788887         5568889


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhc-ccCCC-CCCC--CCC-CccccHHHHHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPI-TRNEA-HYPI--IKQ-GQFVHLDDLCSA  237 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~-~~~~--~~~-~~~i~v~D~a~~  237 (338)
                      |+.+|+.+|++++.+.    .+++++|++++|||+... +   +..++... .+.+. .+++  +.. +++.+++|++++
T Consensus       128 Yg~sK~~~E~~~~~~~----~~~~ilR~~~vyGp~~~~-~---~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~  199 (299)
T PRK09987        128 YGETKLAGEKALQEHC----AKHLIFRTSWVYAGKGNN-F---AKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHA  199 (299)
T ss_pred             HHHHHHHHHHHHHHhC----CCEEEEecceecCCCCCC-H---HHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHH
Confidence            9999999999997643    457999999999997532 1   11122211 23332 2332  222 345677888888


Q ss_pred             HHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCC--CCC------CC---CCCccccccccccchhhhhh-cCCcc
Q 040253          238 HIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEF--NVP------TE---FEDVDENMKNMLFSSKKLTD-LGFKF  304 (338)
Q Consensus       238 ~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~--~~~------~~---~~~~~~~~~~~~~~~~~~~~-lg~~~  304 (338)
                      +..++......|+||++ ++.+|+.|+++.+.+.++..  +.+      ..   +......+....+|++++++ |||+|
T Consensus       200 ~~~~~~~~~~~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~  279 (299)
T PRK09987        200 IRVALNKPEVAGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVL  279 (299)
T ss_pred             HHHhhccCCCCCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCC
Confidence            88888765556799984 68899999999997754321  111      11   11122345566889999998 99998


Q ss_pred             cccHHHHHHHHHHHH
Q 040253          305 KYSLDDMFTGAVDTC  319 (338)
Q Consensus       305 ~~~~~~~i~~~~~~~  319 (338)
                      . +|+++|+++++.+
T Consensus       280 ~-~~~~~l~~~~~~~  293 (299)
T PRK09987        280 P-DWQVGVKRMLTEL  293 (299)
T ss_pred             c-cHHHHHHHHHHHH
Confidence            6 9999999999765

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=100.00  E-value=3.2e-39  Score=269.44  Aligned_cols=306  Identities=20%  Similarity=0.283  Sum_probs=238.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      .++||||||+||||+|.+.+|+++|+.|.+++- +......+.+...+.....++.++++|++|.+.++++|+  ++|.|
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V   81 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV   81 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence            579999999999999999999999999999985 334455555554444334789999999999999999997  79999


Q ss_pred             EEecccCC--CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           82 FHLATPMD--FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        82 i~~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      +|+|+...  ...+++ ..++..|+.++.+|++.+++++ ++.+|+.||+.|||  .+..-|++|+++.+        .|
T Consensus        82 ~Hfa~~~~vgeS~~~p-~~Y~~nNi~gtlnlLe~~~~~~-~~~~V~sssatvYG--~p~~ip~te~~~t~--------~p  149 (343)
T KOG1371|consen   82 MHFAALAAVGESMENP-LSYYHNNIAGTLNLLEVMKAHN-VKALVFSSSATVYG--LPTKVPITEEDPTD--------QP  149 (343)
T ss_pred             EeehhhhccchhhhCc-hhheehhhhhHHHHHHHHHHcC-CceEEEecceeeec--CcceeeccCcCCCC--------CC
Confidence            99998643  555566 4899999999999999999999 99999999999999  66778999998322        38


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeC--CCCCC-----CCChhHH-----Hhhh-----hcccCCCCCCC
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVG--PFLTS-----SMPPSLI-----TALS-----PITRNEAHYPI  222 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G--~~~~~-----~~~~~~~-----~~~~-----~~~~~~~~~~~  222 (338)
                      .++|+.+|...|+.+..+...+++.++.||.++++|  |.-..     .++..+.     ..+.     ...+......+
T Consensus       150 ~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~d  229 (343)
T KOG1371|consen  150 TNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTID  229 (343)
T ss_pred             CCcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCcccccC
Confidence            899999999999999999998899999999999999  32111     1111111     1110     00111111122


Q ss_pred             CC-CCccccHHHHHHHHHHhhcCCCC---CCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhh
Q 040253          223 IK-QGQFVHLDDLCSAHIFLFEHPNA---KGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKK  296 (338)
Q Consensus       223 ~~-~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  296 (338)
                      +. .++++|+-|+|+....++.+...   .++||. ++.+.++.+++.++++..|. ++|..+ +.++.+....+.++++
T Consensus       230 gt~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~-~~k~~~v~~R~gdv~~~ya~~~~  308 (343)
T KOG1371|consen  230 GTIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKALGV-KIKKKVVPRRNGDVAFVYANPSK  308 (343)
T ss_pred             CCeeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHHhcC-CCCccccCCCCCCceeeeeChHH
Confidence            22 27899999999999999987553   348987 67889999999999999874 455443 3356666777777766


Q ss_pred             hhh-cCCcccccHHHHHHHHHHHHHHcC
Q 040253          297 LTD-LGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       297 ~~~-lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      +.+ |||+|.+.+++++++.++|..++.
T Consensus       309 a~~elgwk~~~~iee~c~dlw~W~~~np  336 (343)
T KOG1371|consen  309 AQRELGWKAKYGLQEMLKDLWRWQKQNP  336 (343)
T ss_pred             HHHHhCCccccCHHHHHHHHHHHHhcCC
Confidence            665 999999999999999999998753

>PLN02686 cinnamoyl-CoA reductase

Probab=100.00  E-value=4.2e-38  Score=283.37  Aligned_cols=297  Identities=27%  Similarity=0.398  Sum_probs=217.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCC---CCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPK---ASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ++|+||||||+||||++++++|+++|++|++++|+.+....+..+.....   ...++.++.+|++|.+++.++++++|+
T Consensus        52 ~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~~d~  131 (367)
T PLN02686         52 EARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDGCAG  131 (367)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHhccE
Confidence            57899999999999999999999999999998887654444332211100   013588999999999999999999999


Q ss_pred             EEEecccCCCCCC-CccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCc--eeeeccCCC--CCCcCCCCCCchhhhh
Q 040253           81 VFHLATPMDFESK-DPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSA--GTLDVEEHR--KPVYDETSWSDLDFVR  154 (338)
Q Consensus        81 vi~~a~~~~~~~~-~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~--~v~~~~~~~--~~~~~e~~~~~~~~~~  154 (338)
                      |||+|+....... .......+.|+.++.+++++++.. + +++|||+||.  .+|+.....  ...++|+.|....   
T Consensus       132 V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~-v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~---  207 (367)
T PLN02686        132 VFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTES-VRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDES---  207 (367)
T ss_pred             EEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCC-ccEEEEeccHHHhcccccCCCCCCcccCCCCCCChh---
Confidence            9999987542211 122355788999999999999886 6 8999999996  467521111  2346676654322   


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHH
Q 040253          155 SVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDL  234 (338)
Q Consensus       155 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  234 (338)
                      .+..|.+.|+.+|..+|++++.+++++|++++++||+++|||+........+..   ...+....++. +..+|+||+|+
T Consensus       208 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~~~~~---~~~g~~~~~g~-g~~~~v~V~Dv  283 (367)
T PLN02686        208 FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNSTATIA---YLKGAQEMLAD-GLLATADVERL  283 (367)
T ss_pred             hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCChhHHH---HhcCCCccCCC-CCcCeEEHHHH
Confidence            133467789999999999999998888999999999999999854322222222   22233233332 33579999999


Q ss_pred             HHHHHHhhcCC---CCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCC-CCCc-cccccccccchhhhhh-cCCcccccH
Q 040253          235 CSAHIFLFEHP---NAKGRYICSSHPATILELAKFLREKYPEFNVPTE-FEDV-DENMKNMLFSSKKLTD-LGFKFKYSL  308 (338)
Q Consensus       235 a~~~~~~l~~~---~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~-lg~~~~~~~  308 (338)
                      +++++.+++..   ..+++|+++++++|++|+++.+.+.+|. +.+.. .... +.+...+..|++|+++ |||.|+-..
T Consensus       284 a~A~~~al~~~~~~~~~~~yi~~g~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~d~~~~~~d~~kl~~~l~~~~~~~~  362 (367)
T PLN02686        284 AEAHVCVYEAMGNKTAFGRYICFDHVVSREDEAEELARQIGL-PINKIAGNSSSDDTPARFELSNKKLSRLMSRTRRCCY  362 (367)
T ss_pred             HHHHHHHHhccCCCCCCCcEEEeCCCccHHHHHHHHHHHcCC-CCCcCCCchhhcCCcccccccHHHHHHHHHHhhhccc
Confidence            99999999852   3456887788999999999999999974 22222 2223 4567788899999997 999997444


Q ss_pred             H
Q 040253          309 D  309 (338)
Q Consensus       309 ~  309 (338)
                      +
T Consensus       363 ~  363 (367)
T PLN02686        363 D  363 (367)
T ss_pred             c
Confidence            3

>PLN02583 cinnamoyl-CoA reductase

Probab=100.00  E-value=7.6e-37  Score=268.16  Aligned_cols=288  Identities=28%  Similarity=0.468  Sum_probs=211.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++||||||+||||++++++|+++|++|++++|+.........+..+.....+++++++|++|.+++.+++.++|.|+|
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~   84 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC   84 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            46799999999999999999999999999999996443222111122211124689999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccC---CCCCCcCCCCCCchhhhhhccCCC
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEE---HRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~---~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      +++....... ..+++++.|+.++.++++++.+...+++||++||.++++...   ....+++|++|.......   .+.
T Consensus        85 ~~~~~~~~~~-~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~---~~~  160 (297)
T PLN02583         85 CFDPPSDYPS-YDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCR---KFK  160 (297)
T ss_pred             eCccCCcccc-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHh---hcc
Confidence            8865442222 235789999999999999998763378999999987764221   123467888765433211   123


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  240 (338)
                      ..|+.+|..+|+.++.++++.|++++++||+++|||+......     .+   .+....++ .+.+.|||++|+|++++.
T Consensus       161 ~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~~-----~~---~~~~~~~~-~~~~~~v~V~Dva~a~~~  231 (297)
T PLN02583        161 LWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHNP-----YL---KGAAQMYE-NGVLVTVDVNFLVDAHIR  231 (297)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCchh-----hh---cCCcccCc-ccCcceEEHHHHHHHHHH
Confidence            4799999999999999988889999999999999998643211     01   11111121 223679999999999999


Q ss_pred             hhcCCCCCCceEEecCCCC-HHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcc
Q 040253          241 LFEHPNAKGRYICSSHPAT-ILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKF  304 (338)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~t-~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~  304 (338)
                      +++.+..++.|+++++..+ +.++++++.+.+|..+.+..............++++|+++||+++
T Consensus       232 al~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~  296 (297)
T PLN02583        232 AFEDVSSYGRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYEMQGSEVYQQRIRNKKLNKLMEDF  296 (297)
T ss_pred             HhcCcccCCcEEEecCCCccHHHHHHHHHHhCCCCCCCCcccccCCCccccccChHHHHHhCccc
Confidence            9998877889999877655 578999999999976665432221122345678899999999875

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=100.00  E-value=2.8e-37  Score=273.78  Aligned_cols=288  Identities=18%  Similarity=0.163  Sum_probs=208.6

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh----CCccEEE
Q 040253            8 VCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI----RGCTGVF   82 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----~~~d~vi   82 (338)
                      |||||||||||++++++|.++|+ +|.+++|..... .+..+        ....+.+|+.+.+.+..+.    .++|+||
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~~~~--------~~~~~~~d~~~~~~~~~~~~~~~~~~D~vv   71 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KFLNL--------ADLVIADYIDKEDFLDRLEKGAFGKIEAIF   71 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hhhhh--------hheeeeccCcchhHHHHHHhhccCCCCEEE
Confidence            69999999999999999999997 788887754322 11111        1135677888877776655    3799999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      |+|+...... .+....++.|+.++.+++++|++.+ + +|||+||.++|+.  . ..+++|++        ++..|.+.
T Consensus        72 h~A~~~~~~~-~~~~~~~~~n~~~~~~ll~~~~~~~-~-~~v~~SS~~vy~~--~-~~~~~e~~--------~~~~p~~~  137 (314)
T TIGR02197        72 HQGACSDTTE-TDGEYMMENNYQYSKRLLDWCAEKG-I-PFIYASSAATYGD--G-EAGFREGR--------ELERPLNV  137 (314)
T ss_pred             ECccccCccc-cchHHHHHHHHHHHHHHHHHHHHhC-C-cEEEEccHHhcCC--C-CCCccccc--------CcCCCCCH
Confidence            9999654332 3345788999999999999999888 5 7999999999973  2 23455554        13347789


Q ss_pred             HHHHHHHHHHHHHHHHHH--cCccEEEEcCCceeCCCCCCC--CChhHHHhh-hhcccCCC-C------CCCCCC-Cccc
Q 040253          163 YFVSKTLAEQAAWKFAEE--NNIDFISIIPSLVVGPFLTSS--MPPSLITAL-SPITRNEA-H------YPIIKQ-GQFV  229 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~-~~~~~~~~-~------~~~~~~-~~~i  229 (338)
                      |+.+|..+|.+++++..+  .+++++++||+.+|||+....  +...+.... ....+... .      ++.+.+ ++++
T Consensus       138 Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i  217 (314)
T TIGR02197       138 YGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFV  217 (314)
T ss_pred             HHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeE
Confidence            999999999999875433  367999999999999985432  222222222 22222222 1      222333 6899


Q ss_pred             cHHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccc-----cccccccchhhhhh-cCC
Q 040253          230 HLDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDE-----NMKNMLFSSKKLTD-LGF  302 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-lg~  302 (338)
                      |++|+++++..++.+ ...++||+ +++++|++|+++.+.+.+|... .......+.     .......|++++++ +||
T Consensus       218 ~v~D~a~~i~~~~~~-~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~  295 (314)
T TIGR02197       218 YVKDVVDVNLWLLEN-GVSGIFNLGTGRARSFNDLADAVFKALGKDE-KIEYIPMPEALRGKYQYFTQADITKLRAAGYY  295 (314)
T ss_pred             EHHHHHHHHHHHHhc-ccCceEEcCCCCCccHHHHHHHHHHHhCCCC-cceeccCccccccccccccccchHHHHHhcCC
Confidence            999999999999988 56779998 5688999999999999987421 111111111     12345689999987 899


Q ss_pred             cccccHHHHHHHHHHHHH
Q 040253          303 KFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       303 ~~~~~~~~~i~~~~~~~~  320 (338)
                      +|+++++++|+++++|++
T Consensus       296 ~p~~~l~~~l~~~~~~~~  313 (314)
T TIGR02197       296 GPFTTLEEGVKDYVQWLL  313 (314)
T ss_pred             CCcccHHHHHHHHHHHHh
Confidence            999999999999999985

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=100.00  E-value=1.3e-36  Score=271.06  Aligned_cols=299  Identities=20%  Similarity=0.231  Sum_probs=218.9

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      +||||||+|+||++++++|+++|++|++++|.... .........    ..+++.+.+|+.+.+.+.++++  ++|+|||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~   76 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER----ITRVTFVEGDLRDRELLDRLFEEHKIDAVIH   76 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc----ccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            68999999999999999999999999988764332 221111110    0257889999999999988886  6999999


Q ss_pred             ecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+.... .......+.+..|+.++.++++++.+.+ ++++|++||.++|+  .....+++|++         +..|.+.
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~ss~~~~g--~~~~~~~~e~~---------~~~~~~~  144 (328)
T TIGR01179        77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTG-VKKFIFSSSAAVYG--EPSSIPISEDS---------PLGPINP  144 (328)
T ss_pred             CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcC-CCEEEEecchhhcC--CCCCCCccccC---------CCCCCCc
Confidence            9986532 1122334678899999999999999888 78999999999997  33344677776         3347789


Q ss_pred             HHHHHHHHHHHHHHHHHH-cCccEEEEcCCceeCCCCCCCC-------ChhHHHhhhhcccC--C-------CCCCCCCC
Q 040253          163 YFVSKTLAEQAAWKFAEE-NNIDFISIIPSLVVGPFLTSSM-------PPSLITALSPITRN--E-------AHYPIIKQ  225 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~~~~--~-------~~~~~~~~  225 (338)
                      |+.+|..+|..++.++++ .+++++++||+.+||+...+..       ...+........+.  .       ...+.+..
T Consensus       145 y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  224 (328)
T TIGR01179       145 YGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTC  224 (328)
T ss_pred             hHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCce
Confidence            999999999999999877 6999999999999998643211       11111111111111  1       11122222


Q ss_pred             -CccccHHHHHHHHHHhhcCC---CCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh
Q 040253          226 -GQFVHLDDLCSAHIFLFEHP---NAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD  299 (338)
Q Consensus       226 -~~~i~v~D~a~~~~~~l~~~---~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  299 (338)
                       ++|||++|++++++.++.+.   ..+++||+ +++++|++|+++.+.+.+|. +.+.. ....+........+++++++
T Consensus       225 ~~~~v~~~D~a~~~~~~~~~~~~~~~~~~~n~~~~~~~s~~ei~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (328)
T TIGR01179       225 VRDYIHVMDLADAHLAALEYLLNGGESHVYNLGYGQGFSVLEVIEAFKKVSGV-DFPVELAPRRPGDPASLVADASKIRR  303 (328)
T ss_pred             EEeeeeHHHHHHHHHHHHhhhhcCCCcceEEcCCCCcccHHHHHHHHHHHhCC-CcceEeCCCCCccccchhcchHHHHH
Confidence             67999999999999998752   23568998 56789999999999999874 33222 12222233345678888877


Q ss_pred             -cCCccccc-HHHHHHHHHHHHHHc
Q 040253          300 -LGFKFKYS-LDDMFTGAVDTCRAK  322 (338)
Q Consensus       300 -lg~~~~~~-~~~~i~~~~~~~~~~  322 (338)
                       |||+|+++ ++++|+++++|++++
T Consensus       304 ~lg~~p~~~~l~~~~~~~~~~~~~~  328 (328)
T TIGR01179       304 ELGWQPKYTDLEIIIKTAWRWESRN  328 (328)
T ss_pred             HhCCCCCcchHHHHHHHHHHHHhcC
Confidence             99999998 999999999999864

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=100.00  E-value=8.4e-37  Score=263.71  Aligned_cols=249  Identities=27%  Similarity=0.349  Sum_probs=188.3

Q ss_pred             EEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEecc
Q 040253            9 CVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLAT   86 (338)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   86 (338)
                      |||||+||||++|+++|+++|  ++|.++++.+...... ....    .+..+++.+|++|++++.++++++|+|||+|+
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~-~~~~----~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa   75 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK-DLQK----SGVKEYIQGDITDPESLEEALEGVDVVFHTAA   75 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch-hhhc----ccceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence            699999999999999999999  7999999866543211 1111    02334999999999999999999999999999


Q ss_pred             cCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCc--CCCCCCchhhhhhccCCCchHH
Q 040253           87 PMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVY--DETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        87 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~--~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      ........+.+.++++|+.++++|+++|++.+ +++|||+||.++++.........  +|..|.       +..+.+.|+
T Consensus        76 ~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~-VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~-------~~~~~~~Y~  147 (280)
T PF01073_consen   76 PVPPWGDYPPEEYYKVNVDGTRNVLEAARKAG-VKRLVYTSSISVVFDNYKGDPIINGDEDTPY-------PSSPLDPYA  147 (280)
T ss_pred             cccccCcccHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcCcceeEeccCCCCcccCCcCCcc-------cccccCchH
Confidence            87755455667899999999999999999998 99999999999998422222222  444421       223677999


Q ss_pred             HHHHHHHHHHHHHHH---Hc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC-CCCCCCCCC-CccccHHHHHHH
Q 040253          165 VSKTLAEQAAWKFAE---EN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN-EAHYPIIKQ-GQFVHLDDLCSA  237 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~---~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~v~D~a~~  237 (338)
                      .||..+|+++.++..   +.  .+.+++|||+.||||++.............   +. ...++.+.. .+++|++|+|.+
T Consensus       148 ~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~~---g~~~~~~g~~~~~~~~vyV~NvA~a  224 (280)
T PF01073_consen  148 ESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVRS---GLFLFQIGDGNNLFDFVYVENVAHA  224 (280)
T ss_pred             HHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHHh---cccceeecCCCceECcEeHHHHHHH
Confidence            999999999998765   22  499999999999999976544433332211   21 122333332 789999999999


Q ss_pred             HHHhhcC---C-----CCCCceEEe-cCCCC-HHHHHHHHHHhCCC
Q 040253          238 HIFLFEH---P-----NAKGRYICS-SHPAT-ILELAKFLREKYPE  273 (338)
Q Consensus       238 ~~~~l~~---~-----~~~~~~~~~-~~~~t-~~e~~~~i~~~~~~  273 (338)
                      .+.+.+.   +     ..++.|+++ ++++. ++|+...+.+.+|.
T Consensus       225 hvlA~~~L~~~~~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~  270 (280)
T PF01073_consen  225 HVLAAQALLEPGKPERVAGQAYFITDGEPVPSFWDFMRPLWEALGY  270 (280)
T ss_pred             HHHHHHHhccccccccCCCcEEEEECCCccCcHHHHHHHHHHHCCC
Confidence            9888642   2     235578874 58888 99999999999985

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=100.00  E-value=2.8e-36  Score=264.03  Aligned_cols=268  Identities=19%  Similarity=0.166  Sum_probs=201.5

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEEEEe
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGVFHL   84 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~   84 (338)
                      +|||||||||||++++++|+++|++|++++|+                       .+|+.+.+++.+++++  +|+|||+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~-----------------------~~d~~~~~~~~~~~~~~~~d~vi~~   57 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS-----------------------QLDLTDPEALERLLRAIRPDAVVNT   57 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc-----------------------ccCCCCHHHHHHHHHhCCCCEEEEC
Confidence            58999999999999999999999999999874                       3688899989888875  5999999


Q ss_pred             cccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           85 ATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        85 a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      |+..... ........++.|+.++.++++++++.+ . +||++||.++|+  .....+++|++         +..|.+.|
T Consensus        58 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~Ss~~vy~--~~~~~~~~E~~---------~~~~~~~Y  124 (287)
T TIGR01214        58 AAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG-A-RLVHISTDYVFD--GEGKRPYREDD---------ATNPLNVY  124 (287)
T ss_pred             CccccccccccCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeeeeec--CCCCCCCCCCC---------CCCCcchh
Confidence            9865422 122344678999999999999999887 4 899999999997  33455688876         33567899


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhc
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~  243 (338)
                      +.+|..+|+.++.+    +++++++||+.+||++........+..  ....+..........++++|++|+|+++..+++
T Consensus       125 ~~~K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~  198 (287)
T TIGR01214       125 GQSKLAGEQAIRAA----GPNALIVRTSWLYGGGGGRNFVRTMLR--LAGRGEELRVVDDQIGSPTYAKDLARVIAALLQ  198 (287)
T ss_pred             hHHHHHHHHHHHHh----CCCeEEEEeeecccCCCCCCHHHHHHH--HhhcCCCceEecCCCcCCcCHHHHHHHHHHHHh
Confidence            99999999999753    789999999999999853221111111  111222222222233689999999999999998


Q ss_pred             CC-CCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-----------CCccccccccccchhhhhh-cCCcccccHH
Q 040253          244 HP-NAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-----------EDVDENMKNMLFSSKKLTD-LGFKFKYSLD  309 (338)
Q Consensus       244 ~~-~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~  309 (338)
                      .+ ..+++||+ +++.+|+.|+++.+.+.+|........           ...........+|++++++ |||.+ ++++
T Consensus       199 ~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~~~-~~~~  277 (287)
T TIGR01214       199 RLARARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGTPL-PHWR  277 (287)
T ss_pred             hccCCCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCCCC-ccHH
Confidence            76 45789988 468899999999999998754321110           1111122445789999998 89954 5999


Q ss_pred             HHHHHHHH
Q 040253          310 DMFTGAVD  317 (338)
Q Consensus       310 ~~i~~~~~  317 (338)
                      ++|.++++
T Consensus       278 ~~l~~~~~  285 (287)
T TIGR01214       278 EALRAYLQ  285 (287)
T ss_pred             HHHHHHHh
Confidence            99998875

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN00016 RNA-binding protein; Provisional

Probab=100.00  E-value=7.9e-36  Score=270.32  Aligned_cols=282  Identities=18%  Similarity=0.208  Sum_probs=202.0

Q ss_pred             CCcEEEEe----CCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-----HhcCCCCCCcEEEEecccCCCCCchhh
Q 040253            4 IAETVCVT----GASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-----LLELPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         4 ~~~~ilVt----GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      ++|+||||    |||||||++++++|+++||+|++++|+.........     ...+.  ..+++++.+|+.|   +.++
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d---~~~~  125 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELS--SAGVKTVWGDPAD---VKSK  125 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhh--hcCceEEEecHHH---HHhh
Confidence            56899999    999999999999999999999999998654221110     00000  1358999999987   3333


Q ss_pred             h--CCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           75 I--RGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        75 ~--~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      +  .++|+|||+++.               +..++.+++++|++.+ +++|||+||.++|+  .....+..|.+      
T Consensus       126 ~~~~~~d~Vi~~~~~---------------~~~~~~~ll~aa~~~g-vkr~V~~SS~~vyg--~~~~~p~~E~~------  181 (378)
T PLN00016        126 VAGAGFDVVYDNNGK---------------DLDEVEPVADWAKSPG-LKQFLFCSSAGVYK--KSDEPPHVEGD------  181 (378)
T ss_pred             hccCCccEEEeCCCC---------------CHHHHHHHHHHHHHcC-CCEEEEEccHhhcC--CCCCCCCCCCC------
Confidence            3  479999999752               1345788999999999 89999999999997  33334556655      


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC-CCCCC-Ccccc
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY-PIIKQ-GQFVH  230 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~  230 (338)
                         +..|..    +|..+|.+++    +.+++++++||+++|||+........+..  ....+.+..+ +.+.+ ++++|
T Consensus       182 ---~~~p~~----sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~~~~~~~~~~--~~~~~~~i~~~g~g~~~~~~i~  248 (378)
T PLN00016        182 ---AVKPKA----GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNNKDCEEWFFD--RLVRGRPVPIPGSGIQLTQLGH  248 (378)
T ss_pred             ---cCCCcc----hHHHHHHHHH----HcCCCeEEEeceeEECCCCCCchHHHHHH--HHHcCCceeecCCCCeeeceec
Confidence               222222    8999998774    46899999999999999865432222211  1222333333 23333 68999


Q ss_pred             HHHHHHHHHHhhcCCCC-CCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCC----C------ccccccccccchhhhh
Q 040253          231 LDDLCSAHIFLFEHPNA-KGRYICS-SHPATILELAKFLREKYPEFNVPTEFE----D------VDENMKNMLFSSKKLT  298 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~-~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~  298 (338)
                      ++|+|+++..+++++.. +++||++ ++.+|+.|+++.+.+.+|.........    .      .+........|+++++
T Consensus       249 v~Dva~ai~~~l~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~  328 (378)
T PLN00016        249 VKDLASMFALVVGNPKAAGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAK  328 (378)
T ss_pred             HHHHHHHHHHHhcCccccCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCHHHHH
Confidence            99999999999988643 5689985 578999999999999987522100000    0      1112233456888988


Q ss_pred             h-cCCcccccHHHHHHHHHHHHHHcCCCCC
Q 040253          299 D-LGFKFKYSLDDMFTGAVDTCRAKGLLPL  327 (338)
Q Consensus       299 ~-lg~~~~~~~~~~i~~~~~~~~~~~~~~~  327 (338)
                      + |||+|+++++++|+++++|++.+|..++
T Consensus       329 ~~LGw~p~~~l~egl~~~~~~~~~~~~~~~  358 (378)
T PLN00016        329 EELGWTPKFDLVEDLKDRYELYFGRGRDRK  358 (378)
T ss_pred             HhcCCCCCCCHHHHHHHHHHHHHhcCCCcc
Confidence            7 9999999999999999999999998754

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=100.00  E-value=3.8e-36  Score=266.71  Aligned_cols=272  Identities=17%  Similarity=0.179  Sum_probs=202.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ++|+||||||+||||++++++|+++|  ++|++++|+......+.....    .++++++.+|++|.+.+.++++++|+|
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~----~~~~~~v~~Dl~d~~~l~~~~~~iD~V   78 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP----APCLRFFIGDVRDKERLTRALRGVDYV   78 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC----CCcEEEEEccCCCHHHHHHHHhcCCEE
Confidence            36899999999999999999999986  789999887654333222111    146899999999999999999999999


Q ss_pred             EEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      ||+||.... ....+..+.+++|+.++.++++++...+ +++||++||...+                         .|.
T Consensus        79 ih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~-~~~iV~~SS~~~~-------------------------~p~  132 (324)
T TIGR03589        79 VHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNG-VKRVVALSTDKAA-------------------------NPI  132 (324)
T ss_pred             EECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCCC-------------------------CCC
Confidence            999986432 1122334789999999999999999988 8899999995322                         245


Q ss_pred             chHHHHHHHHHHHHHHHHH---HcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC-CCCCCCCCC-CccccHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAE---ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN-EAHYPIIKQ-GQFVHLDDLC  235 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~v~D~a  235 (338)
                      ++|+.+|.++|.+++.++.   .+|++++++|||++|||+..  ....+....  ..+. +..+..+.. ++|+|++|++
T Consensus       133 ~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~--~i~~~~~~~--~~~~~~~~i~~~~~~r~~i~v~D~a  208 (324)
T TIGR03589       133 NLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS--VVPFFKSLK--EEGVTELPITDPRMTRFWITLEQGV  208 (324)
T ss_pred             CHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC--cHHHHHHHH--HhCCCCeeeCCCCceEeeEEHHHHH
Confidence            6899999999999987543   46999999999999998732  112222111  1232 222333333 6799999999


Q ss_pred             HHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCcccc-ccccccchhhhhh-cCCcccccHHHHHH
Q 040253          236 SAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDEN-MKNMLFSSKKLTD-LGFKFKYSLDDMFT  313 (338)
Q Consensus       236 ~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-lg~~~~~~~~~~i~  313 (338)
                      ++++.++++...+++|+.++...++.|+++.+.+..+....+.    .+.+ ......|++++++ |||+|++++++++.
T Consensus       209 ~a~~~al~~~~~~~~~~~~~~~~sv~el~~~i~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~lg~~~~~~l~~~~~  284 (324)
T TIGR03589       209 NFVLKSLERMLGGEIFVPKIPSMKITDLAEAMAPECPHKIVGI----RPGEKLHEVMITEDDARHTYELGDYYAILPSIS  284 (324)
T ss_pred             HHHHHHHhhCCCCCEEccCCCcEEHHHHHHHHHhhCCeeEeCC----CCCchhHhhhcChhhhhhhcCCCCeEEEccccc
Confidence            9999999875445577666677999999999998754211111    2223 2445578888877 99999999999986

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=9.5e-35  Score=243.63  Aligned_cols=267  Identities=22%  Similarity=0.192  Sum_probs=211.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |+|||||++|++|++|+++|. .+++|+.++|..                       .|++|++.+.+.++  ++|+|||
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~-----------------------~Ditd~~~v~~~i~~~~PDvVIn   56 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEFEVIATDRAE-----------------------LDITDPDAVLEVIRETRPDVVIN   56 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCceEEeccCcc-----------------------ccccChHHHHHHHHhhCCCEEEE
Confidence            359999999999999999998 678999987752                       69999999999997  6899999


Q ss_pred             ecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+... +.++...+..+.+|..++.+++++|++.|  .++||+||.+||.  .....++.|++         ++.|.+.
T Consensus        57 ~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFD--G~~~~~Y~E~D---------~~~P~nv  123 (281)
T COG1091          57 AAAYTAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFD--GEKGGPYKETD---------TPNPLNV  123 (281)
T ss_pred             CccccccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEec--CCCCCCCCCCC---------CCCChhh
Confidence            999877 44555557899999999999999999999  6799999999996  44457899998         6679999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcc-cCCCCCCCCCCCccccHHHHHHHHHHh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPIT-RNEAHYPIIKQGQFVHLDDLCSAHIFL  241 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~D~a~~~~~~  241 (338)
                      ||+||+++|..++.+    +-+.+|+|.+++||....    .....+++... ++......++-.+.+++.|+|+++..+
T Consensus       124 YG~sKl~GE~~v~~~----~~~~~I~Rtswv~g~~g~----nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~l  195 (281)
T COG1091         124 YGRSKLAGEEAVRAA----GPRHLILRTSWVYGEYGN----NFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILEL  195 (281)
T ss_pred             hhHHHHHHHHHHHHh----CCCEEEEEeeeeecCCCC----CHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHH
Confidence            999999999999764    466899999999998742    12223333332 333333344446799999999999999


Q ss_pred             hcCCCCCCceEEec-CCCCHHHHHHHHHHhCCCC---CCCCCCCCcc---ccccccccchhhhhh-cCCcccccHHHHHH
Q 040253          242 FEHPNAKGRYICSS-HPATILELAKFLREKYPEF---NVPTEFEDVD---ENMKNMLFSSKKLTD-LGFKFKYSLDDMFT  313 (338)
Q Consensus       242 l~~~~~~~~~~~~~-~~~t~~e~~~~i~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~  313 (338)
                      +......++|++++ ...||.|+++.|.+.++..   .-+......+   ..+....++++++.+ +|+.|. +|+++++
T Consensus       196 l~~~~~~~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~-~w~~~l~  274 (281)
T COG1091         196 LEKEKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EWREALK  274 (281)
T ss_pred             HhccccCcEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-cHHHHHH
Confidence            99988888998865 5579999999999988622   1122222222   334456789999988 899888 8999999


Q ss_pred             HHHHH
Q 040253          314 GAVDT  318 (338)
Q Consensus       314 ~~~~~  318 (338)
                      ++++.
T Consensus       275 ~~~~~  279 (281)
T COG1091         275 ALLDE  279 (281)
T ss_pred             HHHhh
Confidence            98864

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=100.00  E-value=8.7e-37  Score=265.26  Aligned_cols=269  Identities=23%  Similarity=0.209  Sum_probs=187.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      ||||||||+|+||++|+++|.++|++|+++.|.                       ..|++|.+.+.+.++  ++|+|||
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-----------------------~~dl~d~~~~~~~~~~~~pd~Vin   57 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS-----------------------DLDLTDPEAVAKLLEAFKPDVVIN   57 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-----------------------CS-TTSHHHHHHHHHHH--SEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-----------------------hcCCCCHHHHHHHHHHhCCCeEec
Confidence            799999999999999999999999999998665                       358999988888886  6999999


Q ss_pred             ecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      ||+... ..++.+++..+.+|+.++.+|+++|...+  .++||+||..||+  .....+++|++         ++.|.+.
T Consensus        58 ~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~STd~VFd--G~~~~~y~E~d---------~~~P~~~  124 (286)
T PF04321_consen   58 CAAYTNVDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHISTDYVFD--GDKGGPYTEDD---------PPNPLNV  124 (286)
T ss_dssp             ------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS---SSTSSSB-TTS-------------SSH
T ss_pred             cceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEeeccEEEc--CCcccccccCC---------CCCCCCH
Confidence            998755 33334456889999999999999999988  5899999999997  44566799998         6678999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhc-ccCCCCCCCCCCCccccHHHHHHHHHHh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPI-TRNEAHYPIIKQGQFVHLDDLCSAHIFL  241 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~~~~~~  241 (338)
                      ||++|+.+|+.+++..    -++.|+|++.+||+...    ..+..+.... .++......+..++++|++|+|+++..+
T Consensus       125 YG~~K~~~E~~v~~~~----~~~~IlR~~~~~g~~~~----~~~~~~~~~~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l  196 (286)
T PF04321_consen  125 YGRSKLEGEQAVRAAC----PNALILRTSWVYGPSGR----NFLRWLLRRLRQGEPIKLFDDQYRSPTYVDDLARVILEL  196 (286)
T ss_dssp             HHHHHHHHHHHHHHH-----SSEEEEEE-SEESSSSS----SHHHHHHHHHHCTSEEEEESSCEE--EEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc----CCEEEEecceecccCCC----chhhhHHHHHhcCCeeEeeCCceeCCEEHHHHHHHHHHH
Confidence            9999999999998633    27999999999999322    1222222222 2333333333336799999999999999


Q ss_pred             hcCCCC----CCceEE-ecCCCCHHHHHHHHHHhCCCCC---CCCCC---CCccccccccccchhhhhh-cCCcccccHH
Q 040253          242 FEHPNA----KGRYIC-SSHPATILELAKFLREKYPEFN---VPTEF---EDVDENMKNMLFSSKKLTD-LGFKFKYSLD  309 (338)
Q Consensus       242 l~~~~~----~~~~~~-~~~~~t~~e~~~~i~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~  309 (338)
                      +++...    .|+||+ +++.+|..|+++.+++.++...   .|...   ......+....+|+++++. +|+++. +|+
T Consensus       197 ~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~-~~~  275 (286)
T PF04321_consen  197 IEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP-PWR  275 (286)
T ss_dssp             HHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----BHH
T ss_pred             HHhcccccccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-CHH
Confidence            987543    689987 5688999999999999987433   11111   1112345567899999998 799998 899


Q ss_pred             HHHHHHHHHH
Q 040253          310 DMFTGAVDTC  319 (338)
Q Consensus       310 ~~i~~~~~~~  319 (338)
                      ++|+++++.+
T Consensus       276 ~~l~~~~~~~  285 (286)
T PF04321_consen  276 EGLEELVKQY  285 (286)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999865

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=100.00  E-value=1.5e-33  Score=247.35  Aligned_cols=275  Identities=20%  Similarity=0.251  Sum_probs=190.4

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEeccc
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATP   87 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   87 (338)
                      ||||||+||||++++++|+++|++|++++|++.......          ...  ..|+.. ..+.+.+.++|+|||+|+.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~--~~~~~~-~~~~~~~~~~D~Vvh~a~~   67 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK----------WEG--YKPWAP-LAESEALEGADAVINLAGE   67 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc----------cee--eecccc-cchhhhcCCCCEEEECCCC
Confidence            699999999999999999999999999999876532211          001  112222 4455667789999999986


Q ss_pred             CCCC---CCCccchhhhhhhHHHHHHHHHHHhCCC-ccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           88 MDFE---SKDPENEVIRPTINGMVSIMRACKNAKT-VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        88 ~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      ....   .......+++.|+.++.++++++++.+. ..+||+.||.++|+  .....+++|++         +..+.+.|
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg--~~~~~~~~E~~---------~~~~~~~~  136 (292)
T TIGR01777        68 PIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYG--TSEDRVFTEED---------SPAGDDFL  136 (292)
T ss_pred             CcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeC--CCCCCCcCccc---------CCCCCChH
Confidence            4321   1123346788999999999999999872 23677777777887  33445677776         22345567


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC-CccccHHHHHHHHHHhh
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ-GQFVHLDDLCSAHIFLF  242 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~~~~~l  242 (338)
                      +..+...|..+..+ ++.+++++++||+.+|||...  ....+........+  ..++.+.. ++++|++|+|+++..++
T Consensus       137 ~~~~~~~e~~~~~~-~~~~~~~~ilR~~~v~G~~~~--~~~~~~~~~~~~~~--~~~g~~~~~~~~i~v~Dva~~i~~~l  211 (292)
T TIGR01777       137 AELCRDWEEAAQAA-EDLGTRVVLLRTGIVLGPKGG--ALAKMLPPFRLGLG--GPLGSGRQWFSWIHIEDLVQLILFAL  211 (292)
T ss_pred             HHHHHHHHHHhhhc-hhcCCceEEEeeeeEECCCcc--hhHHHHHHHhcCcc--cccCCCCcccccEeHHHHHHHHHHHh
Confidence            77777777766543 346899999999999999642  11111111111111  12333333 78999999999999999


Q ss_pred             cCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCcc---------c-cccccccchhhhhhcCCccccc-HHH
Q 040253          243 EHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVD---------E-NMKNMLFSSKKLTDLGFKFKYS-LDD  310 (338)
Q Consensus       243 ~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~lg~~~~~~-~~~  310 (338)
                      +++...++||+ +++++|++|+++.+.+.+|. +.+...+.+.         . ......+++++++++||+|+++ ++|
T Consensus       212 ~~~~~~g~~~~~~~~~~s~~di~~~i~~~~g~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  290 (292)
T TIGR01777       212 ENASISGPVNATAPEPVRNKEFAKALARALHR-PAFFPVPAFVLRALLGEMADLLLKGQRVLPEKLLEAGFQFQYPDLDE  290 (292)
T ss_pred             cCcccCCceEecCCCccCHHHHHHHHHHHhCC-CCcCcCCHHHHHHHhchhhHHHhCCcccccHHHHhcCCeeeCcChhh
Confidence            98767789988 56889999999999999874 2222222211         1 1234567889999999999996 888


Q ss_pred             HH
Q 040253          311 MF  312 (338)
Q Consensus       311 ~i  312 (338)
                      ++
T Consensus       291 ~~  292 (292)
T TIGR01777       291 AL  292 (292)
T ss_pred             cC
Confidence            64

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=100.00  E-value=1.6e-34  Score=245.69  Aligned_cols=227  Identities=25%  Similarity=0.335  Sum_probs=181.0

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEEEEec
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGVFHLA   85 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~~a   85 (338)
                      |||||||||||++++++|+++|+.|+.+.|+..........       .+++++.+|+.|.+.+.+++++  +|+|||+|
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-------~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a   73 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK-------LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLA   73 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH-------TTEEEEESETTSHHHHHHHHHHHTESEEEEEB
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc-------ceEEEEEeeccccccccccccccCceEEEEee
Confidence            79999999999999999999999999999987765443321       2789999999999999999984  59999999


Q ss_pred             ccCC--CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           86 TPMD--FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        86 ~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      +...  ... ......++.|+.++.++++++++.+ +++||++||.++|+  .....+++|++         +..|.++|
T Consensus        74 ~~~~~~~~~-~~~~~~~~~n~~~~~~ll~~~~~~~-~~~~i~~sS~~~y~--~~~~~~~~e~~---------~~~~~~~Y  140 (236)
T PF01370_consen   74 AFSSNPESF-EDPEEIIEANVQGTRNLLEAAREAG-VKRFIFLSSASVYG--DPDGEPIDEDS---------PINPLSPY  140 (236)
T ss_dssp             SSSSHHHHH-HSHHHHHHHHHHHHHHHHHHHHHHT-TSEEEEEEEGGGGT--SSSSSSBETTS---------GCCHSSHH
T ss_pred             ccccccccc-ccccccccccccccccccccccccc-cccccccccccccc--ccccccccccc---------cccccccc
Confidence            9753  111 3345788999999999999999999 79999999999998  44566778887         44678899


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC-CCCChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHHHHHHH
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT-SSMPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDLCSAHI  239 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~-~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~~  239 (338)
                      +.+|..+|+.++.+.++++++++++||+++|||... ......+..++ ....+++. .++.+.+ ++++|++|+|+++.
T Consensus       141 ~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  220 (236)
T PF01370_consen  141 GASKRAAEELLRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIV  220 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHH
Confidence            999999999999999989999999999999999911 11122222222 22234433 3344444 78999999999999


Q ss_pred             HhhcCCC-CCCceEEe
Q 040253          240 FLFEHPN-AKGRYICS  254 (338)
Q Consensus       240 ~~l~~~~-~~~~~~~~  254 (338)
                      .+++++. .+++||++
T Consensus       221 ~~~~~~~~~~~~yNig  236 (236)
T PF01370_consen  221 AALENPKAAGGIYNIG  236 (236)
T ss_dssp             HHHHHSCTTTEEEEES
T ss_pred             HHHhCCCCCCCEEEeC
Confidence            9999988 67899974

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=4.5e-33  Score=227.36  Aligned_cols=304  Identities=18%  Similarity=0.222  Sum_probs=237.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC--cHHHHHHHhcCCCC-CCcEEEEecccCCCCCchhhhC--Cc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELPKA-STHLTLWKADLAEEGNFDEPIR--GC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~--~~   78 (338)
                      ++|+.||||-||+-|++|++.|+++||.|.++.|+.+  +...+ ++...+.. +++++.+.+|++|...+.++++  ++
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri-~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P   79 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRI-HLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP   79 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccc-eeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence            3689999999999999999999999999999999643  33322 44444332 4679999999999999999987  79


Q ss_pred             cEEEEecccCC--CCCCCccchhhhhhhHHHHHHHHHHHhCCC-ccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhh
Q 040253           79 TGVFHLATPMD--FESKDPENEVIRPTINGMVSIMRACKNAKT-VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRS  155 (338)
Q Consensus        79 d~vi~~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~  155 (338)
                      |.|+|+|++..  ...+.|. .+.+++..++.+|+|+++..+. ..||...||+..||  .....|.+|++         
T Consensus        80 dEIYNLaAQS~V~vSFe~P~-~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG--~v~~~pq~E~T---------  147 (345)
T COG1089          80 DEIYNLAAQSHVGVSFEQPE-YTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYG--LVQEIPQKETT---------  147 (345)
T ss_pred             hhheeccccccccccccCcc-eeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhc--CcccCccccCC---------
Confidence            99999999765  4444554 7899999999999999999873 47999999999998  66677888888         


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-hhHHHh-hhhcccCCCCCCCC---CCCcccc
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-PSLITA-LSPITRNEAHYPII---KQGQFVH  230 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~---~~~~~i~  230 (338)
                      |-.|.++|+.+|+.+-.....|.+.+|+-.+.-..+|-=+|..+..+. ..+... .+...|....+..+   ..+||-|
T Consensus       148 PFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~  227 (345)
T COG1089         148 PFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGH  227 (345)
T ss_pred             CCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEeccccccccccc
Confidence            556999999999999999999999999998887787777887665432 223222 23334444333222   2389999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCC-------------------CCCCC---ccccc
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVP-------------------TEFED---VDENM  287 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~-------------------~~~~~---~~~~~  287 (338)
                      +.|.++++..+++++. ...|++ ++...|++|+++.-.+..|. ++.                   +.+..   .|.+.
T Consensus       228 A~DYVe~mwlmLQq~~-PddyViATg~t~sVrefv~~Af~~~g~-~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV  305 (345)
T COG1089         228 AKDYVEAMWLMLQQEE-PDDYVIATGETHSVREFVELAFEMVGI-DLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEV  305 (345)
T ss_pred             hHHHHHHHHHHHccCC-CCceEEecCceeeHHHHHHHHHHHcCc-eEEEeeccccccccccccCceeEEECccccCchhh
Confidence            9999999999999976 556755 78999999999999988762 111                   11111   25555


Q ss_pred             cccccchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          288 KNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       288 ~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      .-+.-|.+|+++ |||+|+++++|.++.++++..+.
T Consensus       306 ~~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~  341 (345)
T COG1089         306 DLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEA  341 (345)
T ss_pred             hhhcCCHHHHHHHcCCccccCHHHHHHHHHHHHHHH
Confidence            666788999986 99999999999999999987654

>CHL00194 ycf39 Ycf39; Provisional

Probab=100.00  E-value=6.9e-33  Score=245.45  Aligned_cols=266  Identities=17%  Similarity=0.195  Sum_probs=191.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|+|||||||+|++++++|+++|++|++++|+.+....+..        .+++++.+|++|++++.++++++|+|||++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~--------~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~   72 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE--------WGAELVYGDLSLPETLPPSFKGVTAIIDAS   72 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh--------cCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence            589999999999999999999999999999998654322221        468999999999999999999999999998


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +...    .....+.+.|+.++.+++++|++.+ ++||||+||.++..                        .+..+|..
T Consensus        73 ~~~~----~~~~~~~~~~~~~~~~l~~aa~~~g-vkr~I~~Ss~~~~~------------------------~~~~~~~~  123 (317)
T CHL00194         73 TSRP----SDLYNAKQIDWDGKLALIEAAKAAK-IKRFIFFSILNAEQ------------------------YPYIPLMK  123 (317)
T ss_pred             CCCC----CCccchhhhhHHHHHHHHHHHHHcC-CCEEEEeccccccc------------------------cCCChHHH
Confidence            6422    1223578899999999999999999 99999999854321                        02236889


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC-CCCCCccccHHHHHHHHHHhhcC
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP-IIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      +|..+|++++    +.+++++++||+.+|+....    ....   ....+.+.... ....++|+|++|+|++++.+++.
T Consensus       124 ~K~~~e~~l~----~~~l~~tilRp~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~  192 (317)
T CHL00194        124 LKSDIEQKLK----KSGIPYTIFRLAGFFQGLIS----QYAI---PILEKQPIWITNESTPISYIDTQDAAKFCLKSLSL  192 (317)
T ss_pred             HHHHHHHHHH----HcCCCeEEEeecHHhhhhhh----hhhh---hhccCCceEecCCCCccCccCHHHHHHHHHHHhcC
Confidence            9999998874    46999999999988863211    0011   11112222222 22337899999999999999987


Q ss_pred             CCC-CCceEE-ecCCCCHHHHHHHHHHhCCCC----CCCCCCC-------C---c----ccc--------c-cccccchh
Q 040253          245 PNA-KGRYIC-SSHPATILELAKFLREKYPEF----NVPTEFE-------D---V----DEN--------M-KNMLFSSK  295 (338)
Q Consensus       245 ~~~-~~~~~~-~~~~~t~~e~~~~i~~~~~~~----~~~~~~~-------~---~----~~~--------~-~~~~~~~~  295 (338)
                      +.. +++||+ +++.+|++|+++.+.+.+|..    .+|....       .   +    +..        . ....++..
T Consensus       193 ~~~~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  272 (317)
T CHL00194        193 PETKNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMA  272 (317)
T ss_pred             ccccCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHH
Confidence            543 568988 457899999999999998752    1221110       0   0    010        0 11223455


Q ss_pred             hhhh-cCCccc--ccHHHHHHHHHHHH
Q 040253          296 KLTD-LGFKFK--YSLDDMFTGAVDTC  319 (338)
Q Consensus       296 ~~~~-lg~~~~--~~~~~~i~~~~~~~  319 (338)
                      ...+ ||+.|.  .++++.+++++...
T Consensus       273 ~~~~~~g~~p~~~~~~~~~~~~~~~~~  299 (317)
T CHL00194        273 ELYKIFKIDPNELISLEDYFQEYFERI  299 (317)
T ss_pred             HHHHHhCCChhhhhhHHHHHHHHHHHH
Confidence            6665 899984  46888877777544

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=100.00  E-value=6.1e-32  Score=234.57  Aligned_cols=306  Identities=22%  Similarity=0.228  Sum_probs=218.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .+.+++||||+||+|.|++++|++++  .+|++++..+............  ...+++.+.+|++|...+.++++++ .|
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~--~~~~v~~~~~D~~~~~~i~~a~~~~-~V   79 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF--RSGRVTVILGDLLDANSISNAFQGA-VV   79 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc--cCCceeEEecchhhhhhhhhhccCc-eE
Confidence            36799999999999999999999998  8999999876421111111110  1268999999999999999999999 77


Q ss_pred             EEecccC-CCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPM-DFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~-~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      +|+|+.. ........+..+++|+.+|.+++++|.+.+ ++++||+||.+|...+.. ...-+|+.+.       |....
T Consensus        80 vh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~-v~~lIYtSs~~Vvf~g~~-~~n~~E~~p~-------p~~~~  150 (361)
T KOG1430|consen   80 VHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG-VKRLIYTSSAYVVFGGEP-IINGDESLPY-------PLKHI  150 (361)
T ss_pred             EEeccccCccccccchhhheeecchhHHHHHHHHHHhC-CCEEEEecCceEEeCCee-cccCCCCCCC-------ccccc
Confidence            7777643 333333345889999999999999999999 999999999999973332 2334454422       23355


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC-CCCCCCC-CccccHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA-HYPIIKQ-GQFVHLDDLCSAH  238 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~  238 (338)
                      .+|+.||..+|+++.+.....++..++|||..||||++....+.....+..   +.-. ....+.. .+++|++.++.+.
T Consensus       151 d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~~~~~i~~~~~~---g~~~f~~g~~~~~~~~~~~~Nva~ah  227 (361)
T KOG1430|consen  151 DPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKRLLPKIVEALKN---GGFLFKIGDGENLNDFTYGENVAWAH  227 (361)
T ss_pred             cccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCccccHHHHHHHHc---cCceEEeeccccccceEEechhHHHH
Confidence            699999999999999987656799999999999999987655444333221   2111 1222222 5699999888887


Q ss_pred             HHhhc-----CCCC-CCceEE-ecCCCCHHHHHHHHHHhCCCCCCC--CCCCC-----------------c---c-----
Q 040253          239 IFLFE-----HPNA-KGRYIC-SSHPATILELAKFLREKYPEFNVP--TEFED-----------------V---D-----  284 (338)
Q Consensus       239 ~~~l~-----~~~~-~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~--~~~~~-----------------~---~-----  284 (338)
                      ..+..     .+.. +..|++ .+.++...++...+.+.+|. ..|  +.++.                 .   |     
T Consensus       228 ilA~~aL~~~~~~~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~-~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~  306 (361)
T KOG1430|consen  228 ILAARALLDKSPSVNGQFYFITDDTPVRFFDFLSPLVKALGY-CLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRF  306 (361)
T ss_pred             HHHHHHHHhcCCccCceEEEEeCCCcchhhHHHHHHHHhcCC-CCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChh
Confidence            76643     2333 446777 56788777777788888874 222  11110                 0   0     


Q ss_pred             ---ccccccccchhhhhh-cCCcccccHHHHHHHHHHHHHHcCCC
Q 040253          285 ---ENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGLL  325 (338)
Q Consensus       285 ---~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~~  325 (338)
                         .......+++.|++. |||+|..++++++.+++.|+......
T Consensus       307 ~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~  351 (361)
T KOG1430|consen  307 RVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS  351 (361)
T ss_pred             heeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence               001133678888887 99999999999999999988765443

>PRK05865 hypothetical protein; Provisional

Probab=100.00  E-value=2.6e-32  Score=262.28  Aligned_cols=248  Identities=21%  Similarity=0.248  Sum_probs=187.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|+||||+||||++++++|+++|++|++++|+....  .      .   .+++++.+|++|.+++.++++++|+|||+|
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--~------~---~~v~~v~gDL~D~~~l~~al~~vD~VVHlA   69 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--W------P---SSADFIAADIRDATAVESAMTGADVVAHCA   69 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--c------c---cCceEEEeeCCCHHHHHHHHhCCCEEEECC
Confidence            5899999999999999999999999999999974321  0      0   357899999999999999999999999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +...        ...+.|+.++.++++++++.+ +++|||+||.+                                   
T Consensus        70 a~~~--------~~~~vNv~GT~nLLeAa~~~g-vkr~V~iSS~~-----------------------------------  105 (854)
T PRK05865         70 WVRG--------RNDHINIDGTANVLKAMAETG-TGRIVFTSSGH-----------------------------------  105 (854)
T ss_pred             Cccc--------chHHHHHHHHHHHHHHHHHcC-CCeEEEECCcH-----------------------------------
Confidence            7532        146889999999999999988 88999999831                                   


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC--C-CCccccHHHHHHHHHHhh
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII--K-QGQFVHLDDLCSAHIFLF  242 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~v~D~a~~~~~~l  242 (338)
                       |..+|+++.    +++++++++||+++|||+..    ..+....    .. ..+..+  . .++|+|++|+++++..++
T Consensus       106 -K~aaE~ll~----~~gl~~vILRp~~VYGP~~~----~~i~~ll----~~-~v~~~G~~~~~~dfIhVdDVA~Ai~~aL  171 (854)
T PRK05865        106 -QPRVEQMLA----DCGLEWVAVRCALIFGRNVD----NWVQRLF----AL-PVLPAGYADRVVQVVHSDDAQRLLVRAL  171 (854)
T ss_pred             -HHHHHHHHH----HcCCCEEEEEeceEeCCChH----HHHHHHh----cC-ceeccCCCCceEeeeeHHHHHHHHHHHH
Confidence             778887774    46999999999999999721    1121111    11 112222  2 258999999999999998


Q ss_pred             cCCC-CCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC--CCCc---cccccccccchhhhhh-cCCcccccHHHHHHH
Q 040253          243 EHPN-AKGRYIC-SSHPATILELAKFLREKYPEFNVPTE--FEDV---DENMKNMLFSSKKLTD-LGFKFKYSLDDMFTG  314 (338)
Q Consensus       243 ~~~~-~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~  314 (338)
                      ++.. .+++||+ +++.+|++|+++.+.+.......+..  ....   ........+|++++++ |||+|+++++++|++
T Consensus       172 ~~~~~~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~d  251 (854)
T PRK05865        172 LDTVIDSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLED  251 (854)
T ss_pred             hCCCcCCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHH
Confidence            7543 4678998 46789999999999875321111111  1100   0111234679999987 999999999999999


Q ss_pred             HHHHHHHc
Q 040253          315 AVDTCRAK  322 (338)
Q Consensus       315 ~~~~~~~~  322 (338)
                      +++||+.+
T Consensus       252 ti~~~r~r  259 (854)
T PRK05865        252 FTLAVRGR  259 (854)
T ss_pred             HHHHHHhh
Confidence            99999875

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-32  Score=217.39  Aligned_cols=290  Identities=19%  Similarity=0.219  Sum_probs=218.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      +++||||||+|.+|++|.+.+.+.|. .-..+.+...                     .+|+++.++.+++|+  ++.+|
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk---------------------d~DLt~~a~t~~lF~~ekPthV   59 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK---------------------DADLTNLADTRALFESEKPTHV   59 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc---------------------cccccchHHHHHHHhccCCcee
Confidence            47999999999999999999999875 1111222211                     369999999999986  79999


Q ss_pred             EEecccCC--CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           82 FHLATPMD--FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        82 i~~a~~~~--~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      ||+|+.+.  +.......+++..|+...-|++..|.++| ++++++..|+++|-  .-...|++|+-.    .+.|+.+.
T Consensus        60 IhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~g-v~K~vsclStCIfP--dkt~yPIdEtmv----h~gpphps  132 (315)
T KOG1431|consen   60 IHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHG-VKKVVSCLSTCIFP--DKTSYPIDETMV----HNGPPHPS  132 (315)
T ss_pred             eehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhc-hhhhhhhcceeecC--CCCCCCCCHHHh----ccCCCCCC
Confidence            99998765  33334445899999999999999999999 99999999999995  444667777742    12234444


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC------CChhHHHhhh-hcccC--CCCCCCCCC-Cccc
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS------MPPSLITALS-PITRN--EAHYPIIKQ-GQFV  229 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~------~~~~~~~~~~-~~~~~--~~~~~~~~~-~~~i  229 (338)
                      .-.|+.+|.++.-.-+.|++++|..++.+-|+++|||.+...      ++..+..+-. ...+.  ...++.+.. ++|+
T Consensus       133 N~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFi  212 (315)
T KOG1431|consen  133 NFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFI  212 (315)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHh
Confidence            558999999998888999999999999999999999976543      1222222211 12222  135666655 7799


Q ss_pred             cHHHHHHHHHHhhcCCCCCCceEE-ecC--CCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcccc
Q 040253          230 HLDDLCSAHIFLFEHPNAKGRYIC-SSH--PATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKY  306 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~~~~~~~-~~~--~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~  306 (338)
                      |++|+|+++.+++.+-..-+-.|+ +++  .+|++|+++++.+.++-..--.+....++.......+++|++.|+|.|++
T Consensus       213 ys~DLA~l~i~vlr~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~sl~pd~~f  292 (315)
T KOG1431|consen  213 YSDDLADLFIWVLREYEGVEPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRSLLPDFKF  292 (315)
T ss_pred             hHhHHHHHHHHHHHhhcCccceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHHhCCCccc
Confidence            999999999999987554444454 454  79999999999999863222222333456667778999999999999999


Q ss_pred             c-HHHHHHHHHHHHHHc
Q 040253          307 S-LDDMFTGAVDTCRAK  322 (338)
Q Consensus       307 ~-~~~~i~~~~~~~~~~  322 (338)
                      + |+++|.++++||.++
T Consensus       293 t~l~~ai~~t~~Wy~~N  309 (315)
T KOG1431|consen  293 TPLEQAISETVQWYLDN  309 (315)
T ss_pred             ChHHHHHHHHHHHHHHh
Confidence            8 999999999999864

>PLN02996 fatty acyl-CoA reductase

Probab=100.00  E-value=1.5e-31  Score=248.00  Aligned_cols=269  Identities=16%  Similarity=0.202  Sum_probs=184.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHh----c----------CCCC-----CCcEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLL----E----------LPKA-----STHLTLW   61 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~----~----------~~~~-----~~~~~~~   61 (338)
                      .+|+|||||||||||+++++.|++.+   .+|+++.|........+++.    .          .+..     ..+++++
T Consensus        10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i   89 (491)
T PLN02996         10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV   89 (491)
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence            36899999999999999999998764   47899999665433222211    0          0000     1579999


Q ss_pred             ecccCCC-------CCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeec
Q 040253           62 KADLAEE-------GNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDV  134 (338)
Q Consensus        62 ~~Dl~d~-------~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~  134 (338)
                      .+|++++       +.+.++++++|+|||+|+.+...  .+.....+.|+.++.+++++|+..+.+++|||+||++|||.
T Consensus        90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~--~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~  167 (491)
T PLN02996         90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFD--ERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGE  167 (491)
T ss_pred             ecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCc--CCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecC
Confidence            9999854       33566778999999999987643  34557899999999999999998643889999999999984


Q ss_pred             cCC--CCCCcCCC-CCC-----chh---------------------h---------hhh--ccCCCchHHHHHHHHHHHH
Q 040253          135 EEH--RKPVYDET-SWS-----DLD---------------------F---------VRS--VKMTGWMYFVSKTLAEQAA  174 (338)
Q Consensus       135 ~~~--~~~~~~e~-~~~-----~~~---------------------~---------~~~--~~~p~~~Y~~sK~~~E~~~  174 (338)
                      ...  .+.++++. ++.     +.+                     .         ..+  ...+.+.|+.||.++|.++
T Consensus       168 ~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~aE~lv  247 (491)
T PLN02996        168 KSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMGEMLL  247 (491)
T ss_pred             CCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHHHHHH
Confidence            221  12222211 100     000                     0         001  1224467999999999999


Q ss_pred             HHHHHHcCccEEEEcCCceeCCCCCCCCC--hhH---HHh-hhhcccCCC-CCCCCCC-CccccHHHHHHHHHHhhcCC-
Q 040253          175 WKFAEENNIDFISIIPSLVVGPFLTSSMP--PSL---ITA-LSPITRNEA-HYPIIKQ-GQFVHLDDLCSAHIFLFEHP-  245 (338)
Q Consensus       175 ~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~---~~~-~~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~~~~l~~~-  245 (338)
                      ..++  .+++++++||++|||++..+...  ..+   ... .....+... .++++.. +|++||+|++++++.++.+. 
T Consensus       248 ~~~~--~~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~a~~~~~  325 (491)
T PLN02996        248 GNFK--ENLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIVAMAAHA  325 (491)
T ss_pred             HHhc--CCCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHHHHHHhh
Confidence            8764  38999999999999998655211  111   111 111223332 3333433 88999999999999998753 


Q ss_pred             ---CCCCceEEe-c--CCCCHHHHHHHHHHhCCCCCC
Q 040253          246 ---NAKGRYICS-S--HPATILELAKFLREKYPEFNV  276 (338)
Q Consensus       246 ---~~~~~~~~~-~--~~~t~~e~~~~i~~~~~~~~~  276 (338)
                         ..+.+||++ +  .++|+.|+++.+.+.++..+.
T Consensus       326 ~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~  362 (491)
T PLN02996        326 GGQGSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPW  362 (491)
T ss_pred             ccCCCCcEEEecCCCCCcccHHHHHHHHHHHhhhCCC
Confidence               124589985 4  589999999999998765443

>PRK07201 short chain dehydrogenase; Provisional

Probab=100.00  E-value=7.8e-31  Score=254.76  Aligned_cols=298  Identities=19%  Similarity=0.203  Sum_probs=204.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHH--HCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC------CchhhhCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLL--ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG------NFDEPIRG   77 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~------~~~~~~~~   77 (338)
                      |+|||||||||||++++++|+  ..|++|++++|+... .....+.... ..++++++.+|++|++      .+.++ ++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~~~~~~~-~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLEALAAYW-GADRVVPLVGDLTEPGLGLSEADIAEL-GD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHHHHHHhc-CCCcEEEEecccCCccCCcCHHHHHHh-cC
Confidence            589999999999999999999  478999999996533 2222221110 1147899999999864      23333 78


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      +|+|||+|+.....  .......+.|+.++.+++++|++.+ +++|||+||.++||..   ...++|+.+..      +.
T Consensus        78 ~D~Vih~Aa~~~~~--~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~v~~SS~~v~g~~---~~~~~e~~~~~------~~  145 (657)
T PRK07201         78 IDHVVHLAAIYDLT--ADEEAQRAANVDGTRNVVELAERLQ-AATFHHVSSIAVAGDY---EGVFREDDFDE------GQ  145 (657)
T ss_pred             CCEEEECceeecCC--CCHHHHHHHHhHHHHHHHHHHHhcC-CCeEEEEeccccccCc---cCccccccchh------hc
Confidence            99999999976533  2334678999999999999999988 8999999999999732   23345544211      22


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-----hhHHHhhhhcccCCC---CCC-CCCCCcc
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-----PSLITALSPITRNEA---HYP-IIKQGQF  228 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-----~~~~~~~~~~~~~~~---~~~-~~~~~~~  228 (338)
                      .+.+.|+.+|+++|+++++   ..+++++++||+++||+...+...     ..+...+......+.   ... .....++
T Consensus       146 ~~~~~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (657)
T PRK07201        146 GLPTPYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNI  222 (657)
T ss_pred             CCCCchHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccccCCCCeeee
Confidence            3456899999999999864   358999999999999987543211     111111111111111   112 2233689


Q ss_pred             ccHHHHHHHHHHhhcCCCC-CCceEEe-cCCCCHHHHHHHHHHhCCCCC---CCCCCCCc------c-------------
Q 040253          229 VHLDDLCSAHIFLFEHPNA-KGRYICS-SHPATILELAKFLREKYPEFN---VPTEFEDV------D-------------  284 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~~-~~~~~~~-~~~~t~~e~~~~i~~~~~~~~---~~~~~~~~------~-------------  284 (338)
                      +|++|+++++..+++.+.. +++||++ ++++|+.|+++.+.+.+|...   .....+..      .             
T Consensus       223 v~vddva~ai~~~~~~~~~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  302 (657)
T PRK07201        223 VPVDYVADALDHLMHKDGRDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVA  302 (657)
T ss_pred             eeHHHHHHHHHHHhcCcCCCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhcchhhHHHHHHH
Confidence            9999999999999886544 5589985 589999999999999987533   11111100      0             


Q ss_pred             -------c----cccccccchhhhhh-c---CCcccccHHHHHHHHHHHHHHc
Q 040253          285 -------E----NMKNMLFSSKKLTD-L---GFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       285 -------~----~~~~~~~~~~~~~~-l---g~~~~~~~~~~i~~~~~~~~~~  322 (338)
                             .    ......+|+.++++ |   |+.+. ++.+.+.++++||.++
T Consensus       303 ~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~  354 (657)
T PRK07201        303 TQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERH  354 (657)
T ss_pred             HhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhc
Confidence                   0    00122567777766 5   54444 5889999999988775

>PLN02778 3,5-epimerase/4-reductase

Probab=99.98  E-value=2e-30  Score=227.04  Aligned_cols=268  Identities=16%  Similarity=0.196  Sum_probs=181.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      ..|+||||||+||||++|+++|+++|++|+...++                          +.|.+.+...++  ++|+|
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~--------------------------~~~~~~v~~~l~~~~~D~V   61 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGR--------------------------LENRASLEADIDAVKPTHV   61 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCc--------------------------cCCHHHHHHHHHhcCCCEE
Confidence            35899999999999999999999999998754322                          223333333333  68999


Q ss_pred             EEecccCCCC----CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCC----CCCCcCCCCCCchhhh
Q 040253           82 FHLATPMDFE----SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEH----RKPVYDETSWSDLDFV  153 (338)
Q Consensus        82 i~~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~----~~~~~~e~~~~~~~~~  153 (338)
                      ||+|+.....    ....+.++++.|+.++.+|+++|++.+ ++ ++++||.++|+....    ...+++|+++      
T Consensus        62 iH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g-v~-~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~------  133 (298)
T PLN02778         62 FNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERG-LV-LTNYATGCIFEYDDAHPLGSGIGFKEEDT------  133 (298)
T ss_pred             EECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CC-EEEEecceEeCCCCCCCcccCCCCCcCCC------
Confidence            9999976421    223445789999999999999999998 65 667788888863221    1224666652      


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHH
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDD  233 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  233 (338)
                        +.+|.+.|+.+|+++|.++..+++     ..++|++..+|++..  ....+..  ....+..... .+  .+++|++|
T Consensus       134 --p~~~~s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~--~~~~fi~--~~~~~~~~~~-~~--~s~~yv~D  199 (298)
T PLN02778        134 --PNFTGSFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS--NPRNFIT--KITRYEKVVN-IP--NSMTILDE  199 (298)
T ss_pred             --CCCCCCchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc--cHHHHHH--HHHcCCCeeE-cC--CCCEEHHH
Confidence              334568999999999999987653     567888877776532  1112221  1122222111 11  47999999


Q ss_pred             HHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCC-C-CCCCCCCcc----ccccccccchhhhhh-cCCccc
Q 040253          234 LCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEF-N-VPTEFEDVD----ENMKNMLFSSKKLTD-LGFKFK  305 (338)
Q Consensus       234 ~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~-~-~~~~~~~~~----~~~~~~~~~~~~~~~-lg~~~~  305 (338)
                      ++++++.++++.. .|+||+ +++.+|+.|+++.+++.++.. . ....+....    ....+..+|++|+++ ++-.+.
T Consensus       200 ~v~al~~~l~~~~-~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~  278 (298)
T PLN02778        200 LLPISIEMAKRNL-TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLP  278 (298)
T ss_pred             HHHHHHHHHhCCC-CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccc
Confidence            9999999997643 579998 568899999999999998741 1 111111100    011133688899887 665444


Q ss_pred             ccHHHHHHHHHHHHHH
Q 040253          306 YSLDDMFTGAVDTCRA  321 (338)
Q Consensus       306 ~~~~~~i~~~~~~~~~  321 (338)
                       ..+++++..++-++.
T Consensus       279 -~~~~~~~~~~~~~~~  293 (298)
T PLN02778        279 -IKESLIKYVFEPNKK  293 (298)
T ss_pred             -hHHHHHHHHHHHHHh
Confidence             467888888777643

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.97  E-value=2.9e-30  Score=211.29  Aligned_cols=277  Identities=21%  Similarity=0.271  Sum_probs=195.4

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-CccEEEEecc
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-GCTGVFHLAT   86 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~~a~   86 (338)
                      |+|||||||||++|+.+|.+.||+|++++|++........        ..++       ..+.+.+... ++|+|||+||
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~--------~~v~-------~~~~~~~~~~~~~DavINLAG   65 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH--------PNVT-------LWEGLADALTLGIDAVINLAG   65 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcC--------cccc-------ccchhhhcccCCCCEEEECCC
Confidence            6899999999999999999999999999999876543211        1111       2233334444 7999999999


Q ss_pred             cCC--C-CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           87 PMD--F-ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        87 ~~~--~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      ..-  . ...+..+...+.-+..|..|.+++.+.. +.+.||.-|.+.-||  ......++|+++...+|....|     
T Consensus        66 ~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG--~~~~~~~tE~~~~g~~Fla~lc-----  138 (297)
T COG1090          66 EPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYG--HSGDRVVTEESPPGDDFLAQLC-----  138 (297)
T ss_pred             CccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEec--CCCceeeecCCCCCCChHHHHH-----
Confidence            543  2 2334456788889999999999998654 255677777777777  5667889999865544432221     


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC-CccccHHHHHHHHHHh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ-GQFVHLDDLCSAHIFL  241 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~~~~~  241 (338)
                           ..=|+.... ++..|.+++++|.|.|.|+.-+ ........ .+  .+-+..++++.+ ++|||++|+++++.++
T Consensus       139 -----~~WE~~a~~-a~~~gtRvvllRtGvVLs~~GG-aL~~m~~~-fk--~glGG~~GsGrQ~~SWIhieD~v~~I~fl  208 (297)
T COG1090         139 -----QDWEEEALQ-AQQLGTRVVLLRTGVVLSPDGG-ALGKMLPL-FK--LGLGGKLGSGRQWFSWIHIEDLVNAILFL  208 (297)
T ss_pred             -----HHHHHHHhh-hhhcCceEEEEEEEEEecCCCc-chhhhcch-hh--hccCCccCCCCceeeeeeHHHHHHHHHHH
Confidence                 222443333 3455999999999999997522 11111111 11  234456777777 7899999999999999


Q ss_pred             hcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCc----------cccccccccchhhhhhcCCccccc-HH
Q 040253          242 FEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDV----------DENMKNMLFSSKKLTDLGFKFKYS-LD  309 (338)
Q Consensus       242 l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lg~~~~~~-~~  309 (338)
                      +++....|.||+ ++.|++.++++..+.+.+.+ +.....+.+          .........-++++.+.||+++|+ ++
T Consensus       209 l~~~~lsGp~N~taP~PV~~~~F~~al~r~l~R-P~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~F~y~dl~  287 (297)
T COG1090         209 LENEQLSGPFNLTAPNPVRNKEFAHALGRALHR-PAILPVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQFQYPDLE  287 (297)
T ss_pred             HhCcCCCCcccccCCCcCcHHHHHHHHHHHhCC-CccccCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCeeecCCHH
Confidence            999999999997 78999999999999999864 222222221          112234456677888899999997 99


Q ss_pred             HHHHHHHH
Q 040253          310 DMFTGAVD  317 (338)
Q Consensus       310 ~~i~~~~~  317 (338)
                      +++.+++.
T Consensus       288 ~AL~~il~  295 (297)
T COG1090         288 EALADILK  295 (297)
T ss_pred             HHHHHHHh
Confidence            99998875

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.97  E-value=8.4e-30  Score=230.67  Aligned_cols=254  Identities=19%  Similarity=0.262  Sum_probs=179.9

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhc------CCCC---CCcEEEEecccCCCC------
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLE------LPKA---STHLTLWKADLAEEG------   69 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~------~~~~---~~~~~~~~~Dl~d~~------   69 (338)
                      +|||||||||||++++++|+++|  ++|++++|+.+.....+.+..      ....   .++++++.+|++++.      
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58999999999999999999998  679999998764332222111      1000   147899999998753      


Q ss_pred             CchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           70 NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        70 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      .+..+.+++|+|||+|+.....  .+...+...|+.++.++++++.+.+ .++|+|+||.++|+..  ...+..|+++..
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~~--~~~~~~~~~nv~g~~~ll~~a~~~~-~~~~v~iSS~~v~~~~--~~~~~~~~~~~~  155 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNWV--YPYSELRAANVLGTREVLRLAASGR-AKPLHYVSTISVLAAI--DLSTVTEDDAIV  155 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEeccC--CcHHHHhhhhhHHHHHHHHHHhhCC-CceEEEEccccccCCc--CCCCcccccccc
Confidence            4555667899999999976532  3345678899999999999999988 7889999999999732  222233333111


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC--hhHHHhhhhcccCCCCCCCCC--C
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP--PSLITALSPITRNEAHYPIIK--Q  225 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~  225 (338)
                          .....+.+.|+.+|+.+|.+++.+.+. |++++++||+.++|+...+...  ..+........... .++...  .
T Consensus       156 ----~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~-~~p~~~~~~  229 (367)
T TIGR01746       156 ----TPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALG-AYPDSPELT  229 (367)
T ss_pred             ----ccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhC-CCCCCCccc
Confidence                012234568999999999999887665 9999999999999984433211  11211111111111 122222  3


Q ss_pred             CccccHHHHHHHHHHhhcCCCC---CCceEEe-cCCCCHHHHHHHHHHhCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHPNA---KGRYICS-SHPATILELAKFLREKYP  272 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~-~~~~t~~e~~~~i~~~~~  272 (338)
                      .+++|++|+++++..++..+..   +++||++ ++++++.|+++.+.+ .|
T Consensus       230 ~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~~~~s~~e~~~~i~~-~g  279 (367)
T TIGR01746       230 EDLTPVDYVARAIVALSSQPAASAGGPVFHVVNPEPVSLDEFLEWLER-AG  279 (367)
T ss_pred             cCcccHHHHHHHHHHHHhCCCcccCCceEEecCCCCCCHHHHHHHHHH-cC
Confidence            6799999999999999877654   5689884 588999999999998 54

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.96  E-value=1.5e-30  Score=219.57  Aligned_cols=245  Identities=20%  Similarity=0.213  Sum_probs=173.3

Q ss_pred             EEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcE----EEEecccCCCCCchhhhC--CccE
Q 040253            8 VCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHL----TLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~----~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      ||||||+|.||+.|+++|++.+ .++++++|+..+.-.++........++++    ..+.+|++|.+.+.++++  ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            7999999999999999999987 58999999987776665543211111233    456899999999999998  8999


Q ss_pred             EEEecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           81 VFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        81 vi~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      |||.||.-+ .-.+..+.+.+++|+.++.+++++|.+++ +++||++||..+..                         |
T Consensus        81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~-v~~~v~ISTDKAv~-------------------------P  134 (293)
T PF02719_consen   81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHG-VERFVFISTDKAVN-------------------------P  134 (293)
T ss_dssp             EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT--SEEEEEEECGCSS--------------------------
T ss_pred             EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEccccccCC-------------------------C
Confidence            999999655 22344556899999999999999999999 99999999987663                         7


Q ss_pred             CchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC-CccccHHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ-GQFVHLDDLC  235 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a  235 (338)
                      .+.||.||..+|+++..+....   +.+++++|.|||.|..  ++....+...  ...|.+........ +=|+.+++.+
T Consensus       135 tnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~--GSVip~F~~Q--i~~g~PlTvT~p~mtRffmti~EAv  210 (293)
T PF02719_consen  135 TNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR--GSVIPLFKKQ--IKNGGPLTVTDPDMTRFFMTIEEAV  210 (293)
T ss_dssp             -SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT--TSCHHHHHHH--HHTTSSEEECETT-EEEEE-HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC--CcHHHHHHHH--HHcCCcceeCCCCcEEEEecHHHHH
Confidence            8899999999999999987765   6899999999999855  2222333222  22355544544444 3389999999


Q ss_pred             HHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCC-----CCCCCCCCCC
Q 040253          236 SAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYP-----EFNVPTEFED  282 (338)
Q Consensus       236 ~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~-----~~~~~~~~~~  282 (338)
                      +.++.++.....+++|.. .+.++++.|+++.+.+..|     ..++++.+.+
T Consensus       211 ~Lvl~a~~~~~~geifvl~mg~~v~I~dlA~~~i~~~g~~~~~~~~i~I~~~G  263 (293)
T PF02719_consen  211 QLVLQAAALAKGGEIFVLDMGEPVKILDLAEAMIELSGLEPGKKPDIPIKFTG  263 (293)
T ss_dssp             HHHHHHHHH--TTEEEEE---TCEECCCHHHHHHHHTT-EEEESSSS-EEE--
T ss_pred             HHHHHHHhhCCCCcEEEecCCCCcCHHHHHHHHHhhcccccccCCCcceEEcC
Confidence            999999988766778887 6799999999999999987     3345554433

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.96  E-value=7e-29  Score=224.72  Aligned_cols=227  Identities=14%  Similarity=0.099  Sum_probs=172.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH---HHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK---VKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      .+++|+|||||||||++++++|+++|++|++++|+......   ......   ..++++++.+|++|++++.++++    
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK---ELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh---hcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            36899999999999999999999999999999997643211   011110   11578999999999999999887    


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      ++|+||||++.....    ....++.|+.++.++++++++.+ +++||++||.++++                       
T Consensus       136 ~~D~Vi~~aa~~~~~----~~~~~~vn~~~~~~ll~aa~~~g-v~r~V~iSS~~v~~-----------------------  187 (390)
T PLN02657        136 PVDVVVSCLASRTGG----VKDSWKIDYQATKNSLDAGREVG-AKHFVLLSAICVQK-----------------------  187 (390)
T ss_pred             CCcEEEECCccCCCC----CccchhhHHHHHHHHHHHHHHcC-CCEEEEEeeccccC-----------------------
Confidence            599999998853211    12456789999999999999998 89999999987763                       


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC-CCCCCCC-C-ccccHHH
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA-HYPIIKQ-G-QFVHLDD  233 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-~~i~v~D  233 (338)
                        |...|..+|..+|..++.  ...+++++++||+.+||+..     ..+..   ...+.+. .++.+.. + ++||++|
T Consensus       188 --p~~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~~-----~~~~~---~~~g~~~~~~GdG~~~~~~~I~v~D  255 (390)
T PLN02657        188 --PLLEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSLG-----GQVEI---VKDGGPYVMFGDGKLCACKPISEAD  255 (390)
T ss_pred             --cchHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhcccH-----HHHHh---hccCCceEEecCCcccccCceeHHH
Confidence              334688999999998865  34699999999999997431     11111   1123332 3344433 2 4799999


Q ss_pred             HHHHHHHhhcCCC-CCCceEEec--CCCCHHHHHHHHHHhCCC
Q 040253          234 LCSAHIFLFEHPN-AKGRYICSS--HPATILELAKFLREKYPE  273 (338)
Q Consensus       234 ~a~~~~~~l~~~~-~~~~~~~~~--~~~t~~e~~~~i~~~~~~  273 (338)
                      +|+++..++..+. .+++||+++  ..+|++|+++.+.+.+|.
T Consensus       256 lA~~i~~~~~~~~~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~  298 (390)
T PLN02657        256 LASFIADCVLDESKINKVLPIGGPGKALTPLEQGEMLFRILGK  298 (390)
T ss_pred             HHHHHHHHHhCccccCCEEEcCCCCcccCHHHHHHHHHHHhCC
Confidence            9999999987654 356899854  479999999999999885

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.4e-28  Score=218.80  Aligned_cols=239  Identities=18%  Similarity=0.183  Sum_probs=197.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~   80 (338)
                      .+|+||||||+|-||+.+++++++.+ .++++++|++.+....+..........++.++.||++|.+.+.+++++  +|+
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~  328 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI  328 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence            47999999999999999999999987 589999999888777665554432346889999999999999999996  999


Q ss_pred             EEEecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           81 VFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        81 vi~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      |||.||.-+ ...+.++.+.+++|+.|+.|++++|.+.+ +++||++||..+.                         +|
T Consensus       329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~-V~~~V~iSTDKAV-------------------------~P  382 (588)
T COG1086         329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNG-VKKFVLISTDKAV-------------------------NP  382 (588)
T ss_pred             EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhC-CCEEEEEecCccc-------------------------CC
Confidence            999999755 33456667999999999999999999999 9999999997765                         37


Q ss_pred             CchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc-cccHHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ-FVHLDDLC  235 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~v~D~a  235 (338)
                      .|.||.||..+|++++.+.++.   +.+++++|.|||.|..  ++....+...+  ..|.+.......-.+ |..+.|.+
T Consensus       383 tNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr--GSViPlFk~QI--~~GgplTvTdp~mtRyfMTI~EAv  458 (588)
T COG1086         383 TNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR--GSVIPLFKKQI--AEGGPLTVTDPDMTRFFMTIPEAV  458 (588)
T ss_pred             chHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC--CCCHHHHHHHH--HcCCCccccCCCceeEEEEHHHHH
Confidence            8899999999999999988754   3899999999999965  22333333222  245555555555434 99999999


Q ss_pred             HHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCC
Q 040253          236 SAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYP  272 (338)
Q Consensus       236 ~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~  272 (338)
                      +.++.+......+++|.. .|+++++.|+++.+.+..|
T Consensus       459 ~LVlqA~a~~~gGeifvldMGepvkI~dLAk~mi~l~g  496 (588)
T COG1086         459 QLVLQAGAIAKGGEIFVLDMGEPVKIIDLAKAMIELAG  496 (588)
T ss_pred             HHHHHHHhhcCCCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence            999999998777778988 6899999999999999886

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.96  E-value=9.9e-29  Score=211.17  Aligned_cols=223  Identities=20%  Similarity=0.243  Sum_probs=131.0

Q ss_pred             EeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcC-C----------CCCCcEEEEecccCCCC------C
Q 040253           10 VTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLEL-P----------KASTHLTLWKADLAEEG------N   70 (338)
Q Consensus        10 VtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~-~----------~~~~~~~~~~~Dl~d~~------~   70 (338)
                      |||||||+|++|+++|++.+.  +|++++|..+.....+++... .          ....+++++.||++++.      .
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999876  999999987665554444221 0          01379999999999864      4


Q ss_pred             chhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc-
Q 040253           71 FDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD-  149 (338)
Q Consensus        71 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~-  149 (338)
                      +..+.+++|+|||+|+.+++..  +.+++.+.|+.++.++++.|.... .++|+|+||+.+.+..   .....|..... 
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~~~--~~~~~~~~NV~gt~~ll~la~~~~-~~~~~~iSTa~v~~~~---~~~~~~~~~~~~  154 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNFNA--PYSELRAVNVDGTRNLLRLAAQGK-RKRFHYISTAYVAGSR---PGTIEEKVYPEE  154 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SBS---S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS----TTT--SSS-HHH
T ss_pred             hhccccccceeeecchhhhhcc--cchhhhhhHHHHHHHHHHHHHhcc-CcceEEeccccccCCC---CCcccccccccc
Confidence            5566678999999999888643  445789999999999999999777 5699999995554311   11221211000 


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC--ChhHHHhh-h-hcccCCC-CCCC-C
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM--PPSLITAL-S-PITRNEA-HYPI-I  223 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~-~-~~~~~~~-~~~~-~  223 (338)
                      ...........+.|.+||+.+|+++++++++.|++++|+|||.|+|....+..  .......+ . ...+... .... .
T Consensus       155 ~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  234 (249)
T PF07993_consen  155 EDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPD  234 (249)
T ss_dssp             --EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---
T ss_pred             cccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCC
Confidence            00011233456699999999999999999888999999999999994433321  11111111 1 1122211 2222 1


Q ss_pred             CCCccccHHHHHHHH
Q 040253          224 KQGQFVHLDDLCSAH  238 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~  238 (338)
                      ...++++||.+|+++
T Consensus       235 ~~~d~vPVD~va~aI  249 (249)
T PF07993_consen  235 ARLDLVPVDYVARAI  249 (249)
T ss_dssp             TT--EEEHHHHHHHH
T ss_pred             ceEeEECHHHHHhhC
Confidence            237899999999986

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.95  E-value=1.9e-27  Score=203.99  Aligned_cols=258  Identities=18%  Similarity=0.173  Sum_probs=176.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCC--------CCCCcEEEEecccCCC------CC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELP--------KASTHLTLWKADLAEE------GN   70 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~~~~Dl~d~------~~   70 (338)
                      ++||+||||||+|.+++..|+.+- .+|++++|..+......++.+.-        ....+++++.+|+..+      ..
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            589999999999999999999875 59999999877655555544321        2247899999999844      35


Q ss_pred             chhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           71 FDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        71 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      +.++.+.+|.|||+|+.+++.  .++.++...|+.|+..+++.|...+ .|.|+|+||.+|+..........++.  ...
T Consensus        81 ~~~La~~vD~I~H~gA~Vn~v--~pYs~L~~~NVlGT~evlrLa~~gk-~Kp~~yVSsisv~~~~~~~~~~~~~~--~~~  155 (382)
T COG3320          81 WQELAENVDLIIHNAALVNHV--FPYSELRGANVLGTAEVLRLAATGK-PKPLHYVSSISVGETEYYSNFTVDFD--EIS  155 (382)
T ss_pred             HHHHhhhcceEEecchhhccc--CcHHHhcCcchHhHHHHHHHHhcCC-CceeEEEeeeeeccccccCCCccccc--ccc
Confidence            677778899999999988854  5667899999999999999999887 78899999999986433222211111  000


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC--CChhHHHhhhhcccCCCCCCCCCCCcc
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS--MPPSLITALSPITRNEAHYPIIKQGQF  228 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                      +....-..+.+.|++|||++|.++++..++ |++++|+|||.|.|....+.  ....+..++.....-..........+.
T Consensus       156 ~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P~~~~~~~~  234 (382)
T COG3320         156 PTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAPDSEYSLDM  234 (382)
T ss_pred             ccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCCCcccchhh
Confidence            111123346679999999999999999887 99999999999999877443  233333333222222221111122333


Q ss_pred             ccHHHHHH-----------HHHHhhcCCC-CCCceEE--ecCCCCHHHHHHHHHH
Q 040253          229 VHLDDLCS-----------AHIFLFEHPN-AKGRYIC--SSHPATILELAKFLRE  269 (338)
Q Consensus       229 i~v~D~a~-----------~~~~~l~~~~-~~~~~~~--~~~~~t~~e~~~~i~~  269 (338)
                      +.++++++           ++..+..++. ..+.|.+  -+..+...++.+.+.+
T Consensus       235 ~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~  289 (382)
T COG3320         235 LPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDEYVDWLIS  289 (382)
T ss_pred             CccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhHHHHhHhh
Confidence            33333333           3333332211 1233432  3678999999988887

>PRK12320 hypothetical protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=219.41  Aligned_cols=241  Identities=18%  Similarity=0.216  Sum_probs=169.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+||||||+||||++++++|+++|++|++++|.+....           .++++++.+|++|+. +.+++.++|+|||+|
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~-----------~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLA   68 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL-----------DPRVDYVCASLRNPV-LQELAGEADAVIHLA   68 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc-----------cCCceEEEccCCCHH-HHHHhcCCCEEEEcC
Confidence            48999999999999999999999999999998643210           146899999999984 777888999999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +....       .....|+.++.+++++|++.+ + ++||+||.  +|  ..        .               .|. 
T Consensus        69 a~~~~-------~~~~vNv~Gt~nLleAA~~~G-v-RiV~~SS~--~G--~~--------~---------------~~~-  111 (699)
T PRK12320         69 PVDTS-------APGGVGITGLAHVANAAARAG-A-RLLFVSQA--AG--RP--------E---------------LYR-  111 (699)
T ss_pred             ccCcc-------chhhHHHHHHHHHHHHHHHcC-C-eEEEEECC--CC--CC--------c---------------ccc-
Confidence            85321       123589999999999999998 5 79999986  33  10        0               121 


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         .+|.++.    .++++++++|++++|||+........+...+.....       +....+||++|++++++.+++..
T Consensus       112 ---~aE~ll~----~~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~-------~~pI~vIyVdDvv~alv~al~~~  177 (699)
T PRK12320        112 ---QAETLVS----TGWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVS-------ARPIRVLHLDDLVRFLVLALNTD  177 (699)
T ss_pred             ---HHHHHHH----hcCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHc-------CCceEEEEHHHHHHHHHHHHhCC
Confidence               3566553    357999999999999997543322222222221111       11245689999999999999874


Q ss_pred             CCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhh-cCCcccccHH--HHHHHH
Q 040253          246 NAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTD-LGFKFKYSLD--DMFTGA  315 (338)
Q Consensus       246 ~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~--~~i~~~  315 (338)
                       ..|+||+ +++.+|+.|+.+++....+...+     ...........+.+..+. ++|.|+..++  +.+.++
T Consensus       178 -~~GiyNIG~~~~~Si~el~~~i~~~~p~~~~-----~~~~~~~~~~pdi~~a~~~~~w~~~~~~~~~~~~~~~  245 (699)
T PRK12320        178 -RNGVVDLATPDTTNVVTAWRLLRSVDPHLRT-----RRVRSWEQLIPEVDIAAVQEDWNFEFGWQATEAIVDT  245 (699)
T ss_pred             -CCCEEEEeCCCeeEHHHHHHHHHHhCCCccc-----cccccHHHhCCCCchhhhhcCCCCcchHHHHHHHHhh
Confidence             3569998 56889999999999876432111     122233344555666655 8999998754  344444

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.95  E-value=1.5e-26  Score=224.22  Aligned_cols=263  Identities=16%  Similarity=0.200  Sum_probs=182.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      +.|+||||||+||||++|++.|.++|++|...                          .+|++|.+.+.+.+.  ++|+|
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~--------------------------~~~l~d~~~v~~~i~~~~pd~V  432 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG--------------------------KGRLEDRSSLLADIRNVKPTHV  432 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhCCCeEEee--------------------------ccccccHHHHHHHHHhhCCCEE
Confidence            35799999999999999999999999987321                          135666666666665  79999


Q ss_pred             EEecccCCC----CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccC----CCCCCcCCCCCCchhhh
Q 040253           82 FHLATPMDF----ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEE----HRKPVYDETSWSDLDFV  153 (338)
Q Consensus        82 i~~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~----~~~~~~~e~~~~~~~~~  153 (338)
                      ||||+....    .+...+...++.|+.++.+|+++|++.+ + +++++||.++|+...    ....+++|++       
T Consensus       433 ih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g-~-~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~-------  503 (668)
T PLN02260        433 FNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENG-L-LMMNFATGCIFEYDAKHPEGSGIGFKEED-------  503 (668)
T ss_pred             EECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcC-C-eEEEEcccceecCCcccccccCCCCCcCC-------
Confidence            999997531    1233455889999999999999999998 6 477888999986321    1134677775       


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHH
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDD  233 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  233 (338)
                       ++.++.+.|+.+|+++|++++.+.     ++.++|+..+||.+... ....+..++..  ......  +  ....+++|
T Consensus       504 -~~~~~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~-~~nfv~~~~~~--~~~~~v--p--~~~~~~~~  570 (668)
T PLN02260        504 -KPNFTGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN-PRNFITKISRY--NKVVNI--P--NSMTVLDE  570 (668)
T ss_pred             -CCCCCCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC-ccHHHHHHhcc--ceeecc--C--CCceehhh
Confidence             133355899999999999998763     35777888888644221 11222222221  111112  1  34677899


Q ss_pred             HHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCC-CCC-CCCCCCCcc-----ccccccccchhhhhh-cCCcc
Q 040253          234 LCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYP-EFN-VPTEFEDVD-----ENMKNMLFSSKKLTD-LGFKF  304 (338)
Q Consensus       234 ~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~-~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~-lg~~~  304 (338)
                      ++.++..+++. ..+|+||++ ++.+|+.|+++.+.+.++ ... .++.....+     ..+.. .+|++++++ +|. +
T Consensus       571 ~~~~~~~l~~~-~~~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~~~k~~~~~~~-~  647 (668)
T PLN02260        571 LLPISIEMAKR-NLRGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMDASKLKKEFPE-L  647 (668)
T ss_pred             HHHHHHHHHHh-CCCceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-cccHHHHHHhCcc-c
Confidence            99998888874 346899985 577999999999999774 221 222211111     12333 789999988 788 6


Q ss_pred             cccHHHHHHHHHHH
Q 040253          305 KYSLDDMFTGAVDT  318 (338)
Q Consensus       305 ~~~~~~~i~~~~~~  318 (338)
                      . +|++++.+++..
T Consensus       648 ~-~~~~~l~~~~~~  660 (668)
T PLN02260        648 L-SIKESLIKYVFE  660 (668)
T ss_pred             c-chHHHHHHHHhh
Confidence            5 799999998753

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.95  E-value=4.7e-26  Score=212.84  Aligned_cols=259  Identities=19%  Similarity=0.243  Sum_probs=175.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHhc-C-------------CC-----CCCcEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLLE-L-------------PK-----ASTHLTLW   61 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~-~-------------~~-----~~~~~~~~   61 (338)
                      ..|+|||||||||||++|++.|++.+   .+|+++.|........+++.. .             +.     ...++.++
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v  197 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV  197 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence            36899999999999999999999865   378999997655433333310 0             00     12579999


Q ss_pred             ecccCCCC------CchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeecc
Q 040253           62 KADLAEEG------NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVE  135 (338)
Q Consensus        62 ~~Dl~d~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~  135 (338)
                      .+|++++.      .+..+.+++|+|||+|+.+...  .+.+...+.|+.++.+++++|+..+..++|||+||++|||..
T Consensus       198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~--~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG~~  275 (605)
T PLN02503        198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFD--ERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQR  275 (605)
T ss_pred             EeeCCCcccCCCHHHHHHHHhcCCEEEECccccccc--cCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeecCC
Confidence            99999873      4455667899999999987643  345678999999999999999887547899999999999843


Q ss_pred             CCCCCCcCCCCCC----------------------ch------------------hhhh----------hccCCCchHHH
Q 040253          136 EHRKPVYDETSWS----------------------DL------------------DFVR----------SVKMTGWMYFV  165 (338)
Q Consensus       136 ~~~~~~~~e~~~~----------------------~~------------------~~~~----------~~~~p~~~Y~~  165 (338)
                      .   ..+.|....                      +.                  +..+          ....-.+.|..
T Consensus       276 ~---G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~  352 (605)
T PLN02503        276 Q---GRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVF  352 (605)
T ss_pred             C---CeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHH
Confidence            2   122222111                      00                  0000          00112378999


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCC------C---CChhHHHhhhhcccCCCCCC-CCC-CCccccHHHH
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTS------S---MPPSLITALSPITRNEAHYP-IIK-QGQFVHLDDL  234 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~------~---~~~~~~~~~~~~~~~~~~~~-~~~-~~~~i~v~D~  234 (338)
                      +|..+|.++++..  .+++++|+||+.|.+....+      .   +...+.  .. ..|....+. .+. ..|+|+||.+
T Consensus       353 TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~--~~-g~G~lr~~~~~~~~~~DiVPVD~v  427 (605)
T PLN02503        353 TKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVL--YY-GKGQLTGFLADPNGVLDVVPADMV  427 (605)
T ss_pred             HHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCccccccCccccchhhh--he-eccceeEEEeCCCeeEeEEeecHH
Confidence            9999999998644  38999999999995422111      1   111111  11 122222122 222 2789999999


Q ss_pred             HHHHHHhhcC-----CCCCCceEE-ec--CCCCHHHHHHHHHHhCC
Q 040253          235 CSAHIFLFEH-----PNAKGRYIC-SS--HPATILELAKFLREKYP  272 (338)
Q Consensus       235 a~~~~~~l~~-----~~~~~~~~~-~~--~~~t~~e~~~~i~~~~~  272 (338)
                      +.+++.+...     .....+||+ ++  .+++++++.+.+.+.+.
T Consensus       428 vna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~  473 (605)
T PLN02503        428 VNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHYK  473 (605)
T ss_pred             HHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHHh
Confidence            9999998432     113458998 45  78999999999998764

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.94  E-value=6.4e-25  Score=229.58  Aligned_cols=258  Identities=20%  Similarity=0.223  Sum_probs=181.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC----CeEEEEEcCCCcHHHHHHHhcC--------CCCCCcEEEEecccCCC----
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG----YAVRATVRDPDNKKKVKHLLEL--------PKASTHLTLWKADLAEE----   68 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~~~~Dl~d~----   68 (338)
                      .++|+|||||||+|++++++|++.+    ++|+++.|........+.+...        .....+++++.+|+.++    
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence            5799999999999999999999876    8999999976554443333210        00113789999999865    


Q ss_pred             --CCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCC---------
Q 040253           69 --GNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEH---------  137 (338)
Q Consensus        69 --~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~---------  137 (338)
                        +.+.++..++|+|||+|+.++..  .+...+...|+.++.++++++...+ +++|+|+||.++|+....         
T Consensus      1051 ~~~~~~~l~~~~d~iiH~Aa~~~~~--~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~v~vSS~~v~~~~~~~~~~~~~~~ 1127 (1389)
T TIGR03443      1051 SDEKWSDLTNEVDVIIHNGALVHWV--YPYSKLRDANVIGTINVLNLCAEGK-AKQFSFVSSTSALDTEYYVNLSDELVQ 1127 (1389)
T ss_pred             CHHHHHHHHhcCCEEEECCcEecCc--cCHHHHHHhHHHHHHHHHHHHHhCC-CceEEEEeCeeecCcccccchhhhhhh
Confidence              33455667899999999987642  3444566789999999999999887 889999999999963110         


Q ss_pred             -CCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC--ChhHHHhhhhcc
Q 040253          138 -RKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM--PPSLITALSPIT  214 (338)
Q Consensus       138 -~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~  214 (338)
                       ....++|..+..    .....+.+.|+.+|+.+|.++..+.+. |++++++||+.|||+...+..  ...+...+....
T Consensus      1128 ~~~~~~~e~~~~~----~~~~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~ 1202 (1389)
T TIGR03443      1128 AGGAGIPESDDLM----GSSKGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGCI 1202 (1389)
T ss_pred             ccCCCCCcccccc----cccccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCCchhHHHHHHHHHH
Confidence             011233332111    112234567999999999999987664 999999999999999755432  222222222111


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEe-cCCCCHHHHHHHHHHh
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICS-SHPATILELAKFLREK  270 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~-~~~~t~~e~~~~i~~~  270 (338)
                      ...........++|++++|++++++.++.++..   ..+||++ +..+++.++++.+.+.
T Consensus      1203 ~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~ 1262 (1389)
T TIGR03443      1203 QLGLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFNDFLGTLKTY 1262 (1389)
T ss_pred             HhCCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHHHHHHHHHHh
Confidence            111111222347899999999999999876532   2368875 5679999999999764

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.94  E-value=5.3e-26  Score=182.23  Aligned_cols=302  Identities=16%  Similarity=0.197  Sum_probs=225.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC--cHHHHHHHhcCCCC--CCcEEEEecccCCCCCchhhhC--Cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELPKA--STHLTLWKADLAEEGNFDEPIR--GC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~--~~   78 (338)
                      .|..||||-||.=|++|++.|+.+||+|.++.|+.+  +...++++...|..  ......+-+|++|...+.+++.  ++
T Consensus        28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ikP  107 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIKP  107 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccCc
Confidence            357899999999999999999999999999999655  46667777777654  3467889999999999999887  78


Q ss_pred             cEEEEecccCCCCCC-CccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhh
Q 040253           79 TGVFHLATPMDFESK-DPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRS  155 (338)
Q Consensus        79 d~vi~~a~~~~~~~~-~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~  155 (338)
                      +-|+|+|++.+.... +-++.+.++...++.+|+++++.++  ..-||-..||+..||  ...+.|-.|.+         
T Consensus       108 tEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyG--kv~e~PQsE~T---------  176 (376)
T KOG1372|consen  108 TEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYG--KVQEIPQSETT---------  176 (376)
T ss_pred             hhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcc--cccCCCcccCC---------
Confidence            999999997662211 2233567888999999999998876  245899999999998  66677778887         


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-hhHHHhhh-hcccCCCCCCCCC---CCcccc
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-PSLITALS-PITRNEAHYPIIK---QGQFVH  230 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~---~~~~i~  230 (338)
                      |-.|.++|+.+|..+-.++..+.+.+++-.+.--.++--.|..+..+. .-+...+. ...++...+..+.   .+||-|
T Consensus       177 PFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGh  256 (376)
T KOG1372|consen  177 PFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGH  256 (376)
T ss_pred             CCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccch
Confidence            445899999999999999999999988765543334444555544322 22222222 2233333333222   288999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCC----------C--------C---Cccccccc
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTE----------F--------E---DVDENMKN  289 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~----------~--------~---~~~~~~~~  289 (338)
                      ..|.++++..+|+++.+....+.+++..|++|+++.--..+|+. +...          .        .   -.|.+...
T Consensus       257 A~dYVEAMW~mLQ~d~PdDfViATge~hsVrEF~~~aF~~ig~~-l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~  335 (376)
T KOG1372|consen  257 AGDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEV-LNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDT  335 (376)
T ss_pred             hHHHHHHHHHHHhcCCCCceEEecCCcccHHHHHHHHHHhhCcE-EeecccccccccccCCceEEEEecccccCcchhhh
Confidence            99999999999999876655566899999999999887777631 1010          0        0   02555666


Q ss_pred             cccchhhhhh-cCCcccccHHHHHHHHHHH
Q 040253          290 MLFSSKKLTD-LGFKFKYSLDDMFTGAVDT  318 (338)
Q Consensus       290 ~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~  318 (338)
                      +.-|.+|+++ |||+|+.++.+-+++++..
T Consensus       336 LqGdasKAk~~LgW~pkv~f~eLVkeMv~~  365 (376)
T KOG1372|consen  336 LQGDASKAKKTLGWKPKVTFPELVKEMVAS  365 (376)
T ss_pred             hcCChHHHHHhhCCCCccCHHHHHHHHHHh
Confidence            7888899988 9999999999999998864

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.93  E-value=3.3e-25  Score=193.65  Aligned_cols=203  Identities=16%  Similarity=0.210  Sum_probs=148.2

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh------CC-cc
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI------RG-CT   79 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~------~~-~d   79 (338)
                      +|+||||||++|++++++|+++|++|++++|++++...           ++++.+.+|++|++.+.+++      ++ +|
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d   69 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG-----------PNEKHVKFDWLDEDTWDNPFSSDDGMEPEIS   69 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC-----------CCCccccccCCCHHHHHHHHhcccCcCCcee
Confidence            58999999999999999999999999999998764321           46778899999999999988      57 99


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      .|+|+++....       .     .....+++++|++.+ ++|||++||..++.   .        .            +
T Consensus        70 ~v~~~~~~~~~-------~-----~~~~~~~i~aa~~~g-v~~~V~~Ss~~~~~---~--------~------------~  113 (285)
T TIGR03649        70 AVYLVAPPIPD-------L-----APPMIKFIDFARSKG-VRRFVLLSASIIEK---G--------G------------P  113 (285)
T ss_pred             EEEEeCCCCCC-------h-----hHHHHHHHHHHHHcC-CCEEEEeeccccCC---C--------C------------c
Confidence            99999874221       0     234578999999999 99999999865432   0        0            0


Q ss_pred             CchHHHHHHHHHHHHHHHHHH-cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-CCCCC-CCCCccccHHHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEE-NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-AHYPI-IKQGQFVHLDDLCS  236 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~-~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~i~v~D~a~  236 (338)
                            .+...|.++    ++ .|++++++||+.+|+........       ....... ...+. ....+|++++|+|+
T Consensus       114 ------~~~~~~~~l----~~~~gi~~tilRp~~f~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~v~~~Dva~  176 (285)
T TIGR03649       114 ------AMGQVHAHL----DSLGGVEYTVLRPTWFMENFSEEFHV-------EAIRKENKIYSATGDGKIPFVSADDIAR  176 (285)
T ss_pred             ------hHHHHHHHH----HhccCCCEEEEeccHHhhhhcccccc-------cccccCCeEEecCCCCccCcccHHHHHH
Confidence                  112234444    33 49999999999998654211100       1111111 12222 22378999999999


Q ss_pred             HHHHhhcCCCC-CCceEE-ecCCCCHHHHHHHHHHhCCC
Q 040253          237 AHIFLFEHPNA-KGRYIC-SSHPATILELAKFLREKYPE  273 (338)
Q Consensus       237 ~~~~~l~~~~~-~~~~~~-~~~~~t~~e~~~~i~~~~~~  273 (338)
                      ++..++..+.. ++.|++ +++.+|++|+++.+.+.+|+
T Consensus       177 ~~~~~l~~~~~~~~~~~l~g~~~~s~~eia~~l~~~~g~  215 (285)
T TIGR03649       177 VAYRALTDKVAPNTDYVVLGPELLTYDDVAEILSRVLGR  215 (285)
T ss_pred             HHHHHhcCCCcCCCeEEeeCCccCCHHHHHHHHHHHhCC
Confidence            99999987644 457876 56899999999999999985

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.93  E-value=7.2e-25  Score=190.70  Aligned_cols=232  Identities=21%  Similarity=0.156  Sum_probs=164.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      .|+||||||+|+||++++++|+++|++|++++|+.+....+....     ..++.++.+|++|.+++.++++       +
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY-----GDRLWVLQLDVTDSAAVRAVVDRAFAALGR   76 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999999999999865444332211     1468899999999988877653       5


Q ss_pred             ccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||......     .+..+..++.|+.++.++++++    ++.+ .+++|++||.....               
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~---------------  140 (276)
T PRK06482         77 IDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG-GGRIVQVSSEGGQI---------------  140 (276)
T ss_pred             CCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcCccccc---------------
Confidence            899999998654221     1123457789999999999987    4445 67999999965432               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCce---eCCCCCCCC--C---hh-HHHhhhhcccC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLV---VGPFLTSSM--P---PS-LITALSPITRN  216 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v---~G~~~~~~~--~---~~-~~~~~~~~~~~  216 (338)
                             +.++.+.|+.+|...|.+++.++++   +|++++++|||.+   ||++.....  .   .. ...........
T Consensus       141 -------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (276)
T PRK06482        141 -------AYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALADG  213 (276)
T ss_pred             -------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHHhhc
Confidence                   1124568999999999999998876   5999999999988   555432110  0   00 00011111111


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhC
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKY  271 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~  271 (338)
                             ...-+.+++|++++++.++..+..+..||++ +...++.|+++.+.+.+
T Consensus       214 -------~~~~~~d~~~~~~a~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  262 (276)
T PRK06482        214 -------SFAIPGDPQKMVQAMIASADQTPAPRRLTLGSDAYASIRAALSERLAAL  262 (276)
T ss_pred             -------cCCCCCCHHHHHHHHHHHHcCCCCCeEEecChHHHHHHHHHHHHHHHHH
Confidence                   0012468999999999999877666678885 46677877777666654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.92  E-value=7.5e-24  Score=181.56  Aligned_cols=228  Identities=20%  Similarity=0.243  Sum_probs=158.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhh-CCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPI-RGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~-~~~d~v   81 (338)
                      .+|+|+||||+|+||++++++|+++|++|+++.|+++......   .   ..++++++.+|++|. +.+.+.+ .++|+|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~---~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL---P---QDPSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc---c---cCCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            3689999999999999999999999999999999865432211   1   114689999999984 6677777 689999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      ||+++....  ..+ ...++.|..++.+++++++..+ +++||++||.++|+..  ...+..+..        ....+..
T Consensus        90 i~~~g~~~~--~~~-~~~~~~n~~~~~~ll~a~~~~~-~~~iV~iSS~~v~g~~--~~~~~~~~~--------~~~~~~~  155 (251)
T PLN00141         90 ICATGFRRS--FDP-FAPWKVDNFGTVNLVEACRKAG-VTRFILVSSILVNGAA--MGQILNPAY--------IFLNLFG  155 (251)
T ss_pred             EECCCCCcC--CCC-CCceeeehHHHHHHHHHHHHcC-CCEEEEEccccccCCC--cccccCcch--------hHHHHHH
Confidence            999875321  112 2345788899999999999888 8899999999998622  111111111        0011223


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHh
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFL  241 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  241 (338)
                      .|..+|..+|++++    +.|++++++||+.+++.......        . .......     ...+++.+|+|+++..+
T Consensus       156 ~~~~~k~~~e~~l~----~~gi~~~iirpg~~~~~~~~~~~--------~-~~~~~~~-----~~~~i~~~dvA~~~~~~  217 (251)
T PLN00141        156 LTLVAKLQAEKYIR----KSGINYTIVRPGGLTNDPPTGNI--------V-MEPEDTL-----YEGSISRDQVAEVAVEA  217 (251)
T ss_pred             HHHHHHHHHHHHHH----hcCCcEEEEECCCccCCCCCceE--------E-ECCCCcc-----ccCcccHHHHHHHHHHH
Confidence            35567888888764    46999999999999976422110        0 0000000     13489999999999999


Q ss_pred             hcCCCCC-CceEE-e---cCCCCHHHHHHHHHH
Q 040253          242 FEHPNAK-GRYIC-S---SHPATILELAKFLRE  269 (338)
Q Consensus       242 l~~~~~~-~~~~~-~---~~~~t~~e~~~~i~~  269 (338)
                      +..+... .++.+ +   +...|+.+++..+++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (251)
T PLN00141        218 LLCPESSYKVVEIVARADAPKRSYKDLFASIKQ  250 (251)
T ss_pred             hcChhhcCcEEEEecCCCCCchhHHHHHHHhhc
Confidence            9886653 45543 3   234789999888765

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.92  E-value=2.3e-24  Score=175.88  Aligned_cols=183  Identities=28%  Similarity=0.381  Sum_probs=141.7

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEeccc
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATP   87 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   87 (338)
                      |+|+||||++|+.++++|+++|++|++++|++++...          .++++++.+|+.|++++.++++++|+|||+++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            7999999999999999999999999999999876554          178999999999999999999999999999975


Q ss_pred             CCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHH
Q 040253           88 MDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK  167 (338)
Q Consensus        88 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK  167 (338)
                      ...            +...+.++++++++.+ ++++|++||.++|.  ........+..           .....|...|
T Consensus        71 ~~~------------~~~~~~~~~~a~~~~~-~~~~v~~s~~~~~~--~~~~~~~~~~~-----------~~~~~~~~~~  124 (183)
T PF13460_consen   71 PPK------------DVDAAKNIIEAAKKAG-VKRVVYLSSAGVYR--DPPGLFSDEDK-----------PIFPEYARDK  124 (183)
T ss_dssp             TTT------------HHHHHHHHHHHHHHTT-SSEEEEEEETTGTT--TCTSEEEGGTC-----------GGGHHHHHHH
T ss_pred             hcc------------cccccccccccccccc-cccceeeeccccCC--CCCcccccccc-----------cchhhhHHHH
Confidence            322            1677889999999999 99999999999885  22111111111           1124788899


Q ss_pred             HHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          168 TLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       168 ~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      ..+|+.++    +.+++|+++||+.+||+....   ..+   .   ..     ......++|+.+|+|++++.++++
T Consensus       125 ~~~e~~~~----~~~~~~~ivrp~~~~~~~~~~---~~~---~---~~-----~~~~~~~~i~~~DvA~~~~~~l~~  183 (183)
T PF13460_consen  125 REAEEALR----ESGLNWTIVRPGWIYGNPSRS---YRL---I---KE-----GGPQGVNFISREDVAKAIVEALEN  183 (183)
T ss_dssp             HHHHHHHH----HSTSEEEEEEESEEEBTTSSS---EEE---E---SS-----TSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred             HHHHHHHH----hcCCCEEEEECcEeEeCCCcc---eeE---E---ec-----cCCCCcCcCCHHHHHHHHHHHhCC
Confidence            99988774    459999999999999987331   000   0   00     112225799999999999998863

...

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.91  E-value=2.8e-23  Score=179.35  Aligned_cols=226  Identities=18%  Similarity=0.189  Sum_probs=153.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      ++++|||||+|+||++++++|+++|++|++++|+++...........  ...++.++++|++|.+.+.++++       +
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK--AGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh--cCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999987654443322211  12467889999999988877654       4


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHH----HHHHHHHH-HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTING----MVSIMRAC-KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~----~~~l~~~~-~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      +|+|||+|+.....     ..+..+..++.|+.+    +..+++++ +..+ .+++|++||...+.              
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-~~~iv~~ss~~~~~--------------  149 (262)
T PRK13394         85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR-GGVVIYMGSVHSHE--------------  149 (262)
T ss_pred             CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC-CcEEEEEcchhhcC--------------
Confidence            89999999865321     112234567789998    56666666 5555 78999999965442              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhccc-CCCCCC-C
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITR-NEAHYP-I  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~-~  222 (338)
                              ...+...|+.+|...+.+++.++++.   +++++++||+.++++.....+............. ....+. .
T Consensus       150 --------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (262)
T PRK13394        150 --------ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVMLGK  221 (262)
T ss_pred             --------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHHhcC
Confidence                    11234589999999999999888773   8999999999999886432211110000000000 000011 1


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      ....+|++++|++++++.++.....   +..|++++
T Consensus       222 ~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~  257 (262)
T PRK13394        222 TVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSH  257 (262)
T ss_pred             CCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCC
Confidence            1126799999999999999976433   33566654

>PRK09135 pteridine reductase; Provisional

Probab=99.91  E-value=5.5e-23  Score=176.10  Aligned_cols=221  Identities=14%  Similarity=0.127  Sum_probs=150.0

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+.++||||||+|+||++++++|+++|++|++++|+... ........... ....+.++.+|++|.+++.++++     
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL-RPGSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999999999999986432 22221111100 01357899999999988877765     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                        ++|+|||+|+.....     ..+..+..++.|+.++.++++++...-  ....++++|+....             . 
T Consensus        83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------~-  148 (249)
T PRK09135         83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE-------------R-  148 (249)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc-------------C-
Confidence              579999999854311     112235688899999999999886421  12356665542211             1 


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                              +.+|.+.|+.+|..+|.+++.+++++  +++++++||+.++||.....+........  ..+.+  +     
T Consensus       149 --------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~~~~~~~~~~--~~~~~--~-----  211 (249)
T PRK09135        149 --------PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNSFDEEARQAI--LARTP--L-----  211 (249)
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccccCCHHHHHHH--HhcCC--c-----
Confidence                    22356789999999999999999875  69999999999999986433332221111  11111  1     


Q ss_pred             CccccHHHHHHHHHHhhcCC-C-CCCceEEec
Q 040253          226 GQFVHLDDLCSAHIFLFEHP-N-AKGRYICSS  255 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~-~-~~~~~~~~~  255 (338)
                      ..+.+++|+++++..++... . .+.+|++++
T Consensus       212 ~~~~~~~d~a~~~~~~~~~~~~~~g~~~~i~~  243 (249)
T PRK09135        212 KRIGTPEDIAEAVRFLLADASFITGQILAVDG  243 (249)
T ss_pred             CCCcCHHHHHHHHHHHcCccccccCcEEEECC
Confidence            22446899999997666532 2 344788854

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.91  E-value=9.9e-23  Score=174.40  Aligned_cols=220  Identities=19%  Similarity=0.206  Sum_probs=155.7

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-HHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |+. ++|+||||||+|+||++++++|+++|++|+++.|+..... .......  ....++.++.+|+.|++++.++++  
T Consensus         1 ~~~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~   78 (249)
T PRK12825          1 MGSLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVE--ALGRRAQAVQADVTDKAALEAAVAAA   78 (249)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH--hcCCceEEEECCcCCHHHHHHHHHHH
Confidence            444 3579999999999999999999999999988777654321 1211111  112568999999999998877663  


Q ss_pred             -----CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCc
Q 040253           77 -----GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                           ++|+|||+|+......     .+.....++.|+.+..++++.+    ++.+ .++||++||...+.  .      
T Consensus        79 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~i~~SS~~~~~--~------  149 (249)
T PRK12825         79 VERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR-GGRIVNISSVAGLP--G------  149 (249)
T ss_pred             HHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECccccCC--C------
Confidence                 5799999999544221     2223467889999999998887    4455 68999999987764  1      


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAH  219 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  219 (338)
                                    ..+...|+.+|...+.+++.++++   .+++++++||+.++|+............   .  .....
T Consensus       150 --------------~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~---~--~~~~~  210 (249)
T PRK12825        150 --------------WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIEEAREA---K--DAETP  210 (249)
T ss_pred             --------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccchhHHh---h--hccCC
Confidence                          113457999999999999888776   5899999999999998754322111110   0  00111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                           ...+++.+|+++++.+++.....   +..|++++
T Consensus       211 -----~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~  244 (249)
T PRK12825        211 -----LGRSGTPEDIARAVAFLCSDASDYITGQVIEVTG  244 (249)
T ss_pred             -----CCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence                 13489999999999999976432   44667643

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.91  E-value=4.2e-23  Score=179.64  Aligned_cols=222  Identities=18%  Similarity=0.091  Sum_probs=155.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++++|+||||+|+||++++++|+++|++|++++|+++....+....     ..++..+.+|++|.+++.++++       
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   77 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH-----PDRALARLLDVTDFDAIDAVVADAEATFG   77 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc-----CCCeeEEEccCCCHHHHHHHHHHHHHHhC
Confidence            3678999999999999999999999999999999876544333211     1467889999999988877665       


Q ss_pred             CccEEEEecccCCCC--CC---CccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE--SK---DPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~--~~---~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....  ..   +.....++.|+.++.++++++.    ..+ .+++|++||...+.  .           
T Consensus        78 ~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS~~~~~--~-----------  143 (277)
T PRK06180         78 PIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITSMGGLI--T-----------  143 (277)
T ss_pred             CCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEecccccC--C-----------
Confidence            589999999864321  11   1223558899999999998853    334 57899999976653  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCC------hhHHHhhhhcccCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMP------PSLITALSPITRNEA  218 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~------~~~~~~~~~~~~~~~  218 (338)
                               .++...|+.+|...|.+++.++.+   +|++++++|||.+.++.....+.      ............ . 
T Consensus       144 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~-  212 (277)
T PRK06180        144 ---------MPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQ-A-  212 (277)
T ss_pred             ---------CCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHH-H-
Confidence                     124558999999999999888866   48999999999998764322111      000000000000 0 


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCCCCCceEEecC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSH  256 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~~  256 (338)
                       ........+..++|++++++.+++.+.....|..++.
T Consensus       213 -~~~~~~~~~~~~~dva~~~~~~l~~~~~~~~~~~g~~  249 (277)
T PRK06180        213 -REAKSGKQPGDPAKAAQAILAAVESDEPPLHLLLGSD  249 (277)
T ss_pred             -HHhhccCCCCCHHHHHHHHHHHHcCCCCCeeEeccHH
Confidence             0001113467899999999999998766656655543

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.91  E-value=4.5e-23  Score=179.24  Aligned_cols=233  Identities=17%  Similarity=0.123  Sum_probs=166.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++++||||||+|+||++++++|+++|++|++++|+++....+....     ...+..+++|++|.+++.++++       
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFG   76 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3579999999999999999999999999999999866544333221     1457889999999988776654       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++..+++++    ++.+ .+++|++||...+.  .           
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS~~~~~--~-----------  142 (275)
T PRK08263         77 RLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQR-SGHIIQISSIGGIS--A-----------  142 (275)
T ss_pred             CCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEcChhhcC--C-----------
Confidence            579999999865421     12334567889999988877765    4455 67999999977664  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCC-----hhHHHhhhhcccCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMP-----PSLITALSPITRNEAH  219 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~-----~~~~~~~~~~~~~~~~  219 (338)
                               ......|+.+|...+.+++.++.+   +|++++++|||.+..+.......     .......... ...  
T Consensus       143 ---------~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-~~~--  210 (275)
T PRK08263        143 ---------FPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREEL-AEQ--  210 (275)
T ss_pred             ---------CCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHH-HHH--
Confidence                     113357999999999999888776   58999999999887664321111     0000000000 000  


Q ss_pred             CCCCCCCcc-ccHHHHHHHHHHhhcCCCCCCceEEe--cCCCCHHHHHHHHHHh
Q 040253          220 YPIIKQGQF-VHLDDLCSAHIFLFEHPNAKGRYICS--SHPATILELAKFLREK  270 (338)
Q Consensus       220 ~~~~~~~~~-i~v~D~a~~~~~~l~~~~~~~~~~~~--~~~~t~~e~~~~i~~~  270 (338)
                         .....+ ++.+|++++++.+++.+...+.|+++  ++.+++.++.+.+.++
T Consensus       211 ---~~~~~~~~~p~dva~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (275)
T PRK08263        211 ---WSERSVDGDPEAAAEALLKLVDAENPPLRLFLGSGVLDLAKADYERRLATW  261 (275)
T ss_pred             ---HHhccCCCCHHHHHHHHHHHHcCCCCCeEEEeCchHHHHHHHHHHHHHHHH
Confidence               011345 89999999999999987777766553  3678899999888875

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.91  E-value=8.1e-23  Score=177.49  Aligned_cols=222  Identities=15%  Similarity=0.122  Sum_probs=153.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++++||||+|+||++++++|+++|++|++++|+.............  ...++.++.+|++|.+++.++++       
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRA--DGGEAVAFPLDVTDPDSVKSFVAQAEEALG   86 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999876544333221111  11367889999999998877664       


Q ss_pred             CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+|+......     .+.....++.|+.++.++++++..    .+ ..+||++||...+.  .           
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~-~g~iv~isS~~~~~--~-----------  152 (274)
T PRK07775         87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR-RGDLIFVGSDVALR--Q-----------  152 (274)
T ss_pred             CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CceEEEECChHhcC--C-----------
Confidence            5799999998643211     122235578999999999887642    33 56899999987664  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               .++...|+.+|.+.|.+++.++++.   |++++++|||.+.++..................    .+....
T Consensus       153 ---------~~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~----~~~~~~  219 (274)
T PRK07775        153 ---------RPHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWA----KWGQAR  219 (274)
T ss_pred             ---------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHH----Hhcccc
Confidence                     1134579999999999999998765   899999999987654211111111111111000    011111


Q ss_pred             CCccccHHHHHHHHHHhhcCCCCCCceEEe
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNAKGRYICS  254 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~  254 (338)
                      ..++++++|+|++++.+++++....+||+.
T Consensus       220 ~~~~~~~~dva~a~~~~~~~~~~~~~~~~~  249 (274)
T PRK07775        220 HDYFLRASDLARAITFVAETPRGAHVVNME  249 (274)
T ss_pred             cccccCHHHHHHHHHHHhcCCCCCCeeEEe
Confidence            256999999999999999886544577763

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.90  E-value=9.5e-23  Score=174.83  Aligned_cols=220  Identities=20%  Similarity=0.149  Sum_probs=156.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+|+||||+|++|.+++++|+++|++|++++|+.++.........  ....++.++.+|+.|.+++.++++       +
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE--AAGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999999999999998654433322111  112458899999999998888774       6


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+++....     ...+.....++.|+.++.++++++.    ..+ .++||++||...+.  .            
T Consensus        84 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss~~~~~--~------------  148 (251)
T PRK12826         84 LDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSSVAGPR--V------------  148 (251)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEechHhhc--c------------
Confidence            8999999986542     1122335678899999999988774    344 57899999976551  0            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +..+...|+.+|..++.+++.++.+   .+++++++||+.++|+..............    .....+     
T Consensus       149 -------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~~~~~~~~----~~~~~~-----  212 (251)
T PRK12826        149 -------GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGDAQWAEAI----AAAIPL-----  212 (251)
T ss_pred             -------CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCchHHHHHH----HhcCCC-----
Confidence                   1123458999999999999988766   489999999999999864332221111111    111111     


Q ss_pred             CccccHHHHHHHHHHhhcCCC---CCCceEEecCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN---AKGRYICSSHP  257 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~~  257 (338)
                      ..+++++|+++++..++....   .+.+|++.++.
T Consensus       213 ~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~  247 (251)
T PRK12826        213 GRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGA  247 (251)
T ss_pred             CCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence            258999999999999887543   24467775543

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.8e-22  Score=175.70  Aligned_cols=237  Identities=17%  Similarity=0.147  Sum_probs=162.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ..++++||||+|+||++++++|+++|++|++++|+.+................++.++.+|++|++++.++++       
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3589999999999999999999999999999999865543332211111112468899999999988877665       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+|+....      ...+.....++.|+.++..+++++....   ...+|+++||...+.              
T Consensus        86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~--------------  151 (276)
T PRK05875         86 RLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN--------------  151 (276)
T ss_pred             CCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC--------------
Confidence            68999999985321      1112234567889999999887664431   145899999987653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +.++.+.|+.+|.+.|.+++.++.++   +++++++||+.+.++..........  ....... ....    
T Consensus       152 --------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~--~~~~~~~-~~~~----  216 (276)
T PRK05875        152 --------THRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPE--LSADYRA-CTPL----  216 (276)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHH--HHHHHHc-CCCC----
Confidence                    11234689999999999999998775   6999999999887664322111000  0000000 0011    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC---CCceEEe-cCCC----CHHHHHHHHHHh
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA---KGRYICS-SHPA----TILELAKFLREK  270 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~-~~~~----t~~e~~~~i~~~  270 (338)
                       ..+++++|+++++..++..+..   +..++++ +..+    +..|+++.+...
T Consensus       217 -~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~  269 (276)
T PRK05875        217 -PRVGEVEDVANLAMFLLSDAASWITGQVINVDGGHMLRRGPDFSSMLEPVFGA  269 (276)
T ss_pred             -CCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCeeccCCccHHHHHHHHhhH
Confidence             3578899999999999987543   3467774 4444    677777666644

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.90  E-value=1.9e-22  Score=175.88  Aligned_cols=229  Identities=17%  Similarity=0.144  Sum_probs=157.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------CC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------RG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~~   77 (338)
                      +++++||||+|+||+++++.|+++|++|++++|+++................+++++.+|++|++++.+ +       .+
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~~   81 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIGR   81 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcCC
Confidence            578999999999999999999999999999999876655544332221112468999999999987765 3       35


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+|+.....     ..+..++.+..|+.++.++++++    ++.+ ..++|++||...+.  .            
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~vsS~~~~~--~------------  146 (280)
T PRK06914         82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK-SGKIINISSISGRV--G------------  146 (280)
T ss_pred             eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEECcccccC--C------------
Confidence            79999999864421     11223356779999988887775    5455 67899999965442  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHH---HcCccEEEEcCCceeCCCCCCCCC---------hhHHHhhhhcccC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE---ENNIDFISIIPSLVVGPFLTSSMP---------PSLITALSPITRN  216 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~---------~~~~~~~~~~~~~  216 (338)
                              ..+...|+.+|...+.+++.++.   .+|++++++|||.++++.......         ...........+.
T Consensus       147 --------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (280)
T PRK06914        147 --------FPGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKH  218 (280)
T ss_pred             --------CCCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHH
Confidence                    12455899999999999988874   359999999999998874321110         0000000000000


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCceEEe-cCCCCHH
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICS-SHPATIL  261 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~-~~~~t~~  261 (338)
                         . ......+++++|+|++++.+++++.....|+++ +..+++.
T Consensus       219 ---~-~~~~~~~~~~~dva~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (280)
T PRK06914        219 ---I-NSGSDTFGNPIDVANLIVEIAESKRPKLRYPIGKGVKLMIL  260 (280)
T ss_pred             ---H-hhhhhccCCHHHHHHHHHHHHcCCCCCcccccCCchHHHHH
Confidence               0 011145789999999999999987766567775 3444444

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.90  E-value=2.1e-22  Score=172.49  Aligned_cols=230  Identities=19%  Similarity=0.132  Sum_probs=154.8

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |.. +.++++||||+|+||++++++|+++|++|++++|+.+. ...+......  ...++.++.+|++|++++.++++  
T Consensus         1 ~~~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~   78 (248)
T PRK07806          1 MGDLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA--AGGRASAVGADLTDEESVAALMDTA   78 (248)
T ss_pred             CCCCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHH
Confidence            543 35899999999999999999999999999999997542 2222111111  11467889999999998876654  


Q ss_pred             -----CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           77 -----GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                           ++|+|||+|+...... ......+++|+.++.++++++...- ...++|++||.....  ...    .+..    
T Consensus        79 ~~~~~~~d~vi~~ag~~~~~~-~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~--~~~----~~~~----  147 (248)
T PRK07806         79 REEFGGLDALVLNASGGMESG-MDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHF--IPT----VKTM----  147 (248)
T ss_pred             HHhCCCCcEEEECCCCCCCCC-CCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhc--Ccc----ccCC----
Confidence                 5899999998543222 2234678899999999999998652 135899999954321  010    0111    


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                             .....|+.+|.++|.+++.++.+   .++++++++|+.+-++...............   .....     ..+
T Consensus       148 -------~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~  212 (248)
T PRK07806        148 -------PEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTATLLNRLNPGAIE---ARREA-----AGK  212 (248)
T ss_pred             -------ccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhhhhhccCCHHHHH---HHHhh-----hcc
Confidence                   12458999999999999998776   3899999999877665321100000000000   00000     147


Q ss_pred             cccHHHHHHHHHHhhcCCCCCC-ceEEecCCC
Q 040253          228 FVHLDDLCSAHIFLFEHPNAKG-RYICSSHPA  258 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~~~-~~~~~~~~~  258 (338)
                      +++++|++++++.+++.....| +|++++...
T Consensus       213 ~~~~~dva~~~~~l~~~~~~~g~~~~i~~~~~  244 (248)
T PRK07806        213 LYTVSEFAAEVARAVTAPVPSGHIEYVGGADY  244 (248)
T ss_pred             cCCHHHHHHHHHHHhhccccCccEEEecCccc
Confidence            9999999999999998665444 678866543

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.90  E-value=1.5e-22  Score=174.35  Aligned_cols=221  Identities=16%  Similarity=0.178  Sum_probs=152.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++|+||||+|+||++++++|+++|++|++++|+++...........  ...++..+.+|+.|.+++.++++       +
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   81 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK--AGGKAIGVAMDVTDEEAINAGIDYAVETFGG   81 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999987665444322211  12578899999999998877664       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHH----HHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSI----MRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l----~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+|+.....     ..+..+..++.|+.++.++    +.++++.+ .++||++||...+.  .            
T Consensus        82 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss~~~~~--~------------  146 (258)
T PRK12429         82 VDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMASVHGLV--G------------  146 (258)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcchhhcc--C------------
Confidence            89999999854321     1112234667888885544    44555556 78999999976553  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC------CC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE------AH  219 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~------~~  219 (338)
                              ..+.+.|+.+|.+.+.+++.++.+.   +++++++||+.+++|..........    . ..+..      ..
T Consensus       147 --------~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~~~~~----~-~~~~~~~~~~~~~  213 (258)
T PRK12429        147 --------SAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQIPDLA----K-ERGISEEEVLEDV  213 (258)
T ss_pred             --------CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhhhhhc----c-ccCCChHHHHHHH
Confidence                    1234589999999999888887664   7999999999999876432111100    0 00000      00


Q ss_pred             C-CCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          220 Y-PIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       220 ~-~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      + .....+++++++|+|+++..++.....   +..|++++
T Consensus       214 ~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~  253 (258)
T PRK12429        214 LLPLVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDG  253 (258)
T ss_pred             HhccCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCC
Confidence            1 011125799999999999999976432   33566654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.90  E-value=2.8e-22  Score=172.36  Aligned_cols=224  Identities=19%  Similarity=0.185  Sum_probs=151.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------CC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------RG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~~   77 (338)
                      ++++|||||+|+||++++++|+++|++|++++|+.+....+.......  ..++.++.+|+.|.+++.+++       .+
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA--GGSVIYLVADVTKEDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            468999999999999999999999999999999876555444332211  146889999999998665543       46


Q ss_pred             ccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+|+......     ....+..++.|+.++..+++++    ++.+ .+++|++||...+.  ..           
T Consensus        79 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~--~~-----------  144 (255)
T TIGR01963        79 LDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIASAHGLV--AS-----------  144 (255)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcchhhcC--CC-----------
Confidence            899999998644211     1122356778999988887766    4455 67999999976553  11           


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC----CCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE----AHYP  221 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~----~~~~  221 (338)
                               .....|+.+|...+.+++.++.+.   +++++++||+.++++.....+......  .......    ...+
T Consensus       145 ---------~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  213 (255)
T TIGR01963       145 ---------PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEKQIADQAKT--RGIPEEQVIREVMLP  213 (255)
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHHHHHhhhcc--cCCCchHHHHHHHHc
Confidence                     123479999999999998877653   899999999999987522110000000  0000000    0001


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      ....+++++++|+|++++.+++....   +..|++++
T Consensus       214 ~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~  250 (255)
T TIGR01963       214 GQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDG  250 (255)
T ss_pred             cCccccCcCHHHHHHHHHHHcCccccCccceEEEEcC
Confidence            11125799999999999999976422   34577754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.89  E-value=8.1e-22  Score=181.23  Aligned_cols=234  Identities=17%  Similarity=0.187  Sum_probs=160.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHh-cCC----C--CCCcEEEEecccCCCCCchhhhC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLL-ELP----K--ASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~----~--~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      .+++||||||+|+||++++++|+++|++|++++|+......+.... ...    .  ...+++++.+|+.|.+++.+++.
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg  158 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG  158 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence            3578999999999999999999999999999999876654432211 100    0  01358899999999999999999


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      ++|+|||++|...... ......+.+|+.++.++++++...+ ++|||++||.++..  ..    ..+.          .
T Consensus       159 giDiVVn~AG~~~~~v-~d~~~~~~VN~~Gt~nLl~Aa~~ag-VgRIV~VSSiga~~--~g----~p~~----------~  220 (576)
T PLN03209        159 NASVVICCIGASEKEV-FDVTGPYRIDYLATKNLVDAATVAK-VNHFILVTSLGTNK--VG----FPAA----------I  220 (576)
T ss_pred             CCCEEEEccccccccc-cchhhHHHHHHHHHHHHHHHHHHhC-CCEEEEEccchhcc--cC----cccc----------c
Confidence            9999999998643211 1233567899999999999999988 89999999986531  00    0000          0


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHH
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS  236 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~  236 (338)
                      ......|...|..+|+.+.    +.|++|++||||.++++.........+    ... .....+     ...+..+|+|+
T Consensus       221 ~~sk~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~~t~~v----~~~-~~d~~~-----gr~isreDVA~  286 (576)
T PLN03209        221 LNLFWGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYKETHNL----TLS-EEDTLF-----GGQVSNLQVAE  286 (576)
T ss_pred             hhhHHHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCccccccccce----eec-cccccC-----CCccCHHHHHH
Confidence            1134567888888888874    469999999999998774321100000    000 000111     34689999999


Q ss_pred             HHHHhhcCCC-C-CCceEE-ecCC---CCHHHHHHHHHH
Q 040253          237 AHIFLFEHPN-A-KGRYIC-SSHP---ATILELAKFLRE  269 (338)
Q Consensus       237 ~~~~~l~~~~-~-~~~~~~-~~~~---~t~~e~~~~i~~  269 (338)
                      +++.++..+. . ..+|.+ ++..   .++.++++.+-.
T Consensus       287 vVvfLasd~~as~~kvvevi~~~~~p~~~~~~~~~~ip~  325 (576)
T PLN03209        287 LMACMAKNRRLSYCKVVEVIAETTAPLTPMEELLAKIPS  325 (576)
T ss_pred             HHHHHHcCchhccceEEEEEeCCCCCCCCHHHHHHhccc
Confidence            9999998654 3 335644 3332   556666655543

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.89  E-value=7.7e-22  Score=157.39  Aligned_cols=295  Identities=15%  Similarity=0.122  Sum_probs=209.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCe-EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      ..+||||||-|.+|..+++.|..+ |.+ |+.-+...+...-.          ..-.++..|+.|...+++.+-  .+|.
T Consensus        44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~----------~~GPyIy~DILD~K~L~eIVVn~RIdW  113 (366)
T KOG2774|consen   44 APRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVT----------DVGPYIYLDILDQKSLEEIVVNKRIDW  113 (366)
T ss_pred             CCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhc----------ccCCchhhhhhccccHHHhhcccccce
Confidence            469999999999999999999765 654 44433322221111          234677889999999999774  7999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      +||+.+..+.-.+.+.....++|+.|..|+++.+++++ . ++...|+.++||...+ ..+.++-.         ...|.
T Consensus       114 L~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~k-L-~iFVPSTIGAFGPtSP-RNPTPdlt---------IQRPR  181 (366)
T KOG2774|consen  114 LVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKHK-L-KVFVPSTIGAFGPTSP-RNPTPDLT---------IQRPR  181 (366)
T ss_pred             eeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHcC-e-eEeecccccccCCCCC-CCCCCCee---------eecCc
Confidence            99999866644455555778999999999999999998 4 5667899999983322 11222222         45689


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCC-C-CChhHHHh-hhhcccCCC-CCCCCCCCccccHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTS-S-MPPSLITA-LSPITRNEA-HYPIIKQGQFVHLDDLCS  236 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~-~-~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~v~D~a~  236 (338)
                      +.||.||..+|.+-+.+..++|+.+-++|.+.++.....+ . ..+....+ -+..+|+-. .+..+....+.|++|+.+
T Consensus       182 TIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc~~  261 (366)
T KOG2774|consen  182 TIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDCMA  261 (366)
T ss_pred             eeechhHHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccccCCCccCceeehHHHHH
Confidence            9999999999999998888899999999998888642211 1 12222111 122234432 344455577999999999


Q ss_pred             HHHHhhcCCCC---CCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccc--cccccc-cchhhhhhcCCcccccHHH
Q 040253          237 AHIFLFEHPNA---KGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDE--NMKNML-FSSKKLTDLGFKFKYSLDD  310 (338)
Q Consensus       237 ~~~~~l~~~~~---~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~lg~~~~~~~~~  310 (338)
                      +++.++..+..   ..+||+++-..|-.|+++.+.+.++.+++.+.......  +..... .|++.-+++.|+-++.+..
T Consensus       262 ~~~~~~~a~~~~lkrr~ynvt~~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~  341 (366)
T KOG2774|consen  262 SVIQLLAADSQSLKRRTYNVTGFSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLS  341 (366)
T ss_pred             HHHHHHhCCHHHhhhheeeeceeccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHH
Confidence            99999876543   44799999999999999999999998877766544322  222233 4444445588988888888


Q ss_pred             HHHHHHHHHHH
Q 040253          311 MFTGAVDTCRA  321 (338)
Q Consensus       311 ~i~~~~~~~~~  321 (338)
                      .+.-++...++
T Consensus       342 ~i~~~i~~~~~  352 (366)
T KOG2774|consen  342 IISTVVAVHKS  352 (366)
T ss_pred             HHHHHHHHHHh
Confidence            77777766554

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.89  E-value=6.6e-22  Score=170.26  Aligned_cols=231  Identities=18%  Similarity=0.111  Sum_probs=161.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++++||||+|+||.+++++|+++|++|++++|++...+.+.....    ..+++++.+|++|.+++.+++.       +
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALG----DARFVPVACDLTDAASLAAALANAAAERGP   77 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999998765444322111    1468899999999998877664       4


Q ss_pred             ccEEEEecccCCCCC--C---CccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFES--K---DPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~--~---~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+++......  .   +.....+..|+.+..++++++.    +.+ ..++|++||...+.  ..           
T Consensus        78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~-----------  143 (257)
T PRK07074         78 VDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRS-RGAVVNIGSVNGMA--AL-----------  143 (257)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhcC--CC-----------
Confidence            899999998643211  1   1122346689998888887773    334 57899999964331  00           


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                                ....|+.+|.+.+.+++.+++++   |++++++|||.++++............ ....... ..     .
T Consensus       144 ----------~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~-~~~~~~~-~~-----~  206 (257)
T PRK07074        144 ----------GHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQV-FEELKKW-YP-----L  206 (257)
T ss_pred             ----------CCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHH-HHHHHhc-CC-----C
Confidence                      11269999999999999998775   799999999999887532211100000 0000000 01     1


Q ss_pred             CccccHHHHHHHHHHhhcCCC--CCC-ceEE-ecCCCCHHHHHHHHHHh
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN--AKG-RYIC-SSHPATILELAKFLREK  270 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~-~~~~~t~~e~~~~i~~~  270 (338)
                      .++++++|+++++..++....  ..| .+++ ++...+.+|+.+.+..+
T Consensus       207 ~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~  255 (257)
T PRK07074        207 QDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMARTLTLE  255 (257)
T ss_pred             CCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhhhccc
Confidence            579999999999999996532  234 4456 45778899999887653

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.89  E-value=3.4e-22  Score=172.07  Aligned_cols=225  Identities=16%  Similarity=0.158  Sum_probs=155.4

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ...++++||||+|+||.+++++|+++|++|++++|+.+....+.....     .++.++.+|++|.+++.++++      
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG-----PAAIAVSLDVTRQDSIDRIVAAAVERF   78 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            346899999999999999999999999999999998765544432211     357889999999988877664      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+|+.....     ..+..+..++.|+.++..+++++...    +...++|++||.....             
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-------------  145 (257)
T PRK07067         79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR-------------  145 (257)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC-------------
Confidence             589999999864321     11234467889999999999888543    1125899999964321             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC-CCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN-EAHYPI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~  222 (338)
                               +..+...|+.+|...+.+++.++.+   +|+++++++||.++++...... ..+........+. ...+..
T Consensus       146 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~~~  215 (257)
T PRK07067        146 ---------GEALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVD-ALFARYENRPPGEKKRLVGE  215 (257)
T ss_pred             ---------CCCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhh-hhhhhccCCCHHHHHHHHhh
Confidence                     1124568999999999999988875   5899999999999987532210 0000000000000 000100


Q ss_pred             C-CCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          223 I-KQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       223 ~-~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      . ...++++.+|+|+++.+++.....   +.+|++++
T Consensus       216 ~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g  252 (257)
T PRK07067        216 AVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDG  252 (257)
T ss_pred             cCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecC
Confidence            1 115799999999999999976432   45677754

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.89  E-value=6.8e-22  Score=168.93  Aligned_cols=220  Identities=19%  Similarity=0.191  Sum_probs=155.2

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |.+++++|+||||+|++|.+++++|+++|++|++++|++...........  ....++.++.+|+.|++++.++++    
T Consensus         1 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (246)
T PRK05653          1 MSLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR--AAGGEARVLVFDVSDEAAVRALIEAAVE   78 (246)
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            65566899999999999999999999999999999998766544332221  112468899999999988777664    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         .+|+|||+++.....     ..+.....++.|+.+..++++++.    +.+ .++||++||.....  .        
T Consensus        79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-~~~ii~~ss~~~~~--~--------  147 (246)
T PRK05653         79 AFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKAR-YGRIVNISSVSGVT--G--------  147 (246)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECcHHhcc--C--------
Confidence               469999999864421     112234568899999999888774    445 67999999975432  0        


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  ..+...|+.+|...+.+++.++++   .+++++++||+.++|+.... .........    ...... 
T Consensus       148 ------------~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~-~~~~~~~~~----~~~~~~-  209 (246)
T PRK05653        148 ------------NPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG-LPEEVKAEI----LKEIPL-  209 (246)
T ss_pred             ------------CCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh-hhHHHHHHH----HhcCCC-
Confidence                        123457999999999998888765   38999999999999886432 111111000    011111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                          ..+++.+|+++++..++.....   +..|++++
T Consensus       210 ----~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g  242 (246)
T PRK05653        210 ----GRLGQPEEVANAVAFLASDAASYITGQVIPVNG  242 (246)
T ss_pred             ----CCCcCHHHHHHHHHHHcCchhcCccCCEEEeCC
Confidence                4588999999999999975332   33566644

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.89  E-value=1.1e-22  Score=166.67  Aligned_cols=228  Identities=19%  Similarity=0.186  Sum_probs=173.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +-.+-|.|||||+|+.++.+|.+.|.+|++-.|..+. ..+++-...+    ..+-+++.|+.|++++.++++...+|||
T Consensus        61 GiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdL----GQvl~~~fd~~DedSIr~vvk~sNVVIN  136 (391)
T KOG2865|consen   61 GIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDL----GQVLFMKFDLRDEDSIRAVVKHSNVVIN  136 (391)
T ss_pred             ceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccc----cceeeeccCCCCHHHHHHHHHhCcEEEE
Confidence            4467799999999999999999999999999996543 3333222222    5688999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      +.|.--.  ..+. .+.++|+.+...|++.|++.| +.|||++|+..+-         +               ...+.|
T Consensus       137 LIGrd~e--Tknf-~f~Dvn~~~aerlAricke~G-VerfIhvS~Lgan---------v---------------~s~Sr~  188 (391)
T KOG2865|consen  137 LIGRDYE--TKNF-SFEDVNVHIAERLARICKEAG-VERFIHVSCLGAN---------V---------------KSPSRM  188 (391)
T ss_pred             eeccccc--cCCc-ccccccchHHHHHHHHHHhhC-hhheeehhhcccc---------c---------------cChHHH
Confidence            9984221  1222 678999999999999999999 9999999986521         0               134478


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC--CccccHHHHHHHHHHh
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ--GQFVHLDDLCSAHIFL  241 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~D~a~~~~~~  241 (338)
                      -.+|.++|+.++....+    .+|+||+.+||..+..  ......+.+. .+....+..+..  ...|||-|+|.++..+
T Consensus       189 LrsK~~gE~aVrdafPe----AtIirPa~iyG~eDrf--ln~ya~~~rk-~~~~pL~~~GekT~K~PVyV~DVaa~IvnA  261 (391)
T KOG2865|consen  189 LRSKAAGEEAVRDAFPE----ATIIRPADIYGTEDRF--LNYYASFWRK-FGFLPLIGKGEKTVKQPVYVVDVAAAIVNA  261 (391)
T ss_pred             HHhhhhhHHHHHhhCCc----ceeechhhhcccchhH--HHHHHHHHHh-cCceeeecCCcceeeccEEEehHHHHHHHh
Confidence            99999999999875443    8999999999977542  1122222221 233334444422  5699999999999999


Q ss_pred             hcCCCCCC-ce-EEecCCCCHHHHHHHHHHhC
Q 040253          242 FEHPNAKG-RY-ICSSHPATILELAKFLREKY  271 (338)
Q Consensus       242 l~~~~~~~-~~-~~~~~~~t~~e~~~~i~~~~  271 (338)
                      +..++..| +| .++++...+.|+++.+-+..
T Consensus       262 vkDp~s~Gktye~vGP~~yql~eLvd~my~~~  293 (391)
T KOG2865|consen  262 VKDPDSMGKTYEFVGPDRYQLSELVDIMYDMA  293 (391)
T ss_pred             ccCccccCceeeecCCchhhHHHHHHHHHHHH
Confidence            99988755 78 46889999999999887754

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.89  E-value=1e-21  Score=168.41  Aligned_cols=216  Identities=16%  Similarity=0.139  Sum_probs=154.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++++++||||+|+||.+++++|+++|++|++++|+.+............  ..++.++.+|++|.+++.++++       
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSAKAMADATVSAFG   82 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999999865544433222111  1357889999999988766554       


Q ss_pred             CccEEEEecccCCCC--------CCCccchhhhhhhHHHHHHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDFE--------SKDPENEVIRPTINGMVSIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|+|||+|+.....        ..+..+..++.|+.++.++++++...-   ..+++|++||..++.            
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------  150 (250)
T PRK07774         83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL------------  150 (250)
T ss_pred             CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC------------
Confidence            589999999964311        112234567899999999988876431   146899999987763            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                   +.+.|+.+|.+.|.+++.+++++   ++++++++||.+..+......+..+....  ..+.+  .  
T Consensus       151 -------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~--~~~~~--~--  211 (250)
T PRK07774        151 -------------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTPKEFVADM--VKGIP--L--  211 (250)
T ss_pred             -------------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCCHHHHHHH--HhcCC--C--
Confidence                         33479999999999999998875   79999999998887654332222211111  11111  1  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                         ..+.+++|++++++.++....   .+..|++.+
T Consensus       212 ---~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~  244 (250)
T PRK07774        212 ---SRMGTPEDLVGMCLFLLSDEASWITGQIFNVDG  244 (250)
T ss_pred             ---CCCcCHHHHHHHHHHHhChhhhCcCCCEEEECC
Confidence               235679999999999987642   244677744

>PRK06182 short chain dehydrogenase; Validated

Probab=99.88  E-value=1.2e-21  Score=170.12  Aligned_cols=223  Identities=17%  Similarity=0.160  Sum_probs=151.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++|+||||+|+||++++++|+++|++|++++|+.+.......        .+++++.+|++|.+++.++++       +
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~   74 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEGR   74 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999998654433221        357899999999998887765       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHH----HHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVS----IMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~----l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||.....     ..+..+..+++|+.+...    ++..+++.+ ..++|++||.....  .            
T Consensus        75 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~--~------------  139 (273)
T PRK06182         75 IDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR-SGRIINISSMGGKI--Y------------  139 (273)
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhcC--C------------
Confidence            89999999864421     112335678889888544    445556666 67999999965431  0            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChh--------HHHhhhhcccCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPS--------LITALSPITRNE  217 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~--------~~~~~~~~~~~~  217 (338)
                              .+....|+.+|.+.+.+.+.++.+   +|+++++++||.+.++.........        ..........  
T Consensus       140 --------~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  209 (273)
T PRK06182        140 --------TPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAA--  209 (273)
T ss_pred             --------CCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHH--
Confidence                    012347999999999988877654   4899999999999877532100000        0000000000  


Q ss_pred             CCCCC-CCCCccccHHHHHHHHHHhhcCCCCCCceEEecCCCCHH
Q 040253          218 AHYPI-IKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATIL  261 (338)
Q Consensus       218 ~~~~~-~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~  261 (338)
                       .+.. .....+.+.+|+|++++.++........|+++.....+.
T Consensus       210 -~~~~~~~~~~~~~~~~vA~~i~~~~~~~~~~~~~~~g~~~~~~~  253 (273)
T PRK06182        210 -SMRSTYGSGRLSDPSVIADAISKAVTARRPKTRYAVGFGAKPLI  253 (273)
T ss_pred             -HHHHhhccccCCCHHHHHHHHHHHHhCCCCCceeecCcchHHHH
Confidence             0000 011457899999999999998765555677654443333

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.88  E-value=1.9e-21  Score=166.87  Aligned_cols=214  Identities=16%  Similarity=0.149  Sum_probs=151.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+++++||||+|+||++++++|+++|++|++++|+.+..........   ...++.++.+|++|++++.++++    
T Consensus         1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~   77 (252)
T PRK06138          1 MRLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGSAEAVEALVDFVAA   77 (252)
T ss_pred             CCCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            55567899999999999999999999999999999998665443332221   12468999999999998877664    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|+|||+++.....     ..+..+..++.|+.++.++.+++    +..+ .++++++||.....  ..       
T Consensus        78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~~~~~--~~-------  147 (252)
T PRK06138         78 RWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG-GGSIVNTASQLALA--GG-------  147 (252)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-CeEEEEECChhhcc--CC-------
Confidence               689999999964321     11223456889999987776654    4445 67999999975543  10       


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh--HHHhhhhcccCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS--LITALSPITRNEAH  219 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~  219 (338)
                                   .+...|+.+|.+.+.+++.++.++   +++++++|||.++++.........  ........ .....
T Consensus       148 -------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~-~~~~~  213 (252)
T PRK06138        148 -------------RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREAL-RARHP  213 (252)
T ss_pred             -------------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHH-HhcCC
Confidence                         134589999999999999998775   899999999999887532211100  00000000 00001


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      .     ..+++.+|+++++..++..+.
T Consensus       214 ~-----~~~~~~~d~a~~~~~l~~~~~  235 (252)
T PRK06138        214 M-----NRFGTAEEVAQAALFLASDES  235 (252)
T ss_pred             C-----CCCcCHHHHHHHHHHHcCchh
Confidence            1     248899999999999998754

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.88  E-value=1.4e-21  Score=167.98  Aligned_cols=217  Identities=16%  Similarity=0.161  Sum_probs=153.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+||||||+|+||++++++|+++|++|++++|+.+..........  ..+.++..+.+|++|.+++.++++       .
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK--GQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--hcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            5899999999999999999999999999999998655443322211  112458889999999988887764       4


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+|+.....     ..+..+..+..|+.++.++++++...    + .+++|++||.....               
T Consensus        88 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~---------------  151 (255)
T PRK07523         88 IDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARG-AGKIINIASVQSAL---------------  151 (255)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEEccchhcc---------------
Confidence            89999999864321     11223456779999999998887643    4 57899999965432               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCC-hhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  224 (338)
                             +..+...|+.+|...+.+++.++.+   +|++++++||+.+.++....... .......    ......    
T Consensus       152 -------~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~----~~~~~~----  216 (255)
T PRK07523        152 -------ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWL----EKRTPA----  216 (255)
T ss_pred             -------CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHH----HhcCCC----
Confidence                   1123458999999999999988864   48999999999999875332111 1111111    111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                       .++..++|+|+++..++.....   +..+++.+
T Consensus       217 -~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~g  249 (255)
T PRK07523        217 -GRWGKVEELVGACVFLASDASSFVNGHVLYVDG  249 (255)
T ss_pred             -CCCcCHHHHHHHHHHHcCchhcCccCcEEEECC
Confidence             4588899999999999975432   33556643

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.88  E-value=3.7e-21  Score=165.90  Aligned_cols=217  Identities=16%  Similarity=0.063  Sum_probs=145.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||++++++|+++|++|++++|+.........+..   ...++.++.+|++|.+++.++++       +
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRA---AGGEALALTADLETYAGAQAAMAAAVEAFGR   84 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHh---cCCeEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999999997532222222211   12467889999999887766554       6


Q ss_pred             ccEEEEecccCC------CCCCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           78 CTGVFHLATPMD------FESKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        78 ~d~vi~~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      +|++||+|+...      ....+..+..++.|+.+...+++.    +++.+ ..++|++||...++  .           
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~--~-----------  150 (260)
T PRK12823         85 IDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATRG--I-----------  150 (260)
T ss_pred             CeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCccccC--C-----------
Confidence            899999998432      111222345677888877655544    44445 56899999987653  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCC--------C-CChhHHHhhhhccc
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTS--------S-MPPSLITALSPITR  215 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~--------~-~~~~~~~~~~~~~~  215 (338)
                                 +...|+.+|.+.+.+++.++.++   |+++++++||.+++|....        . ..............
T Consensus       151 -----------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (260)
T PRK12823        151 -----------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLD  219 (260)
T ss_pred             -----------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhc
Confidence                       12369999999999999998776   8999999999999873110        0 00001111110101


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      . ..+     ..+.+++|+++++++++....   .+..+++.+
T Consensus       220 ~-~~~-----~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~g  256 (260)
T PRK12823        220 S-SLM-----KRYGTIDEQVAAILFLASDEASYITGTVLPVGG  256 (260)
T ss_pred             c-CCc-----ccCCCHHHHHHHHHHHcCcccccccCcEEeecC
Confidence            1 111     346789999999999986542   233566644

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.88  E-value=3.4e-21  Score=165.55  Aligned_cols=218  Identities=18%  Similarity=0.153  Sum_probs=150.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHH-HHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVK-HLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +++|+||||+|+||++++++|+++|++|.++ .|+.+...... .+..   ....++++.+|++|.+++.++++      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~i~~~~~~~~~~~   82 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIES---NGGKAFLIEADLNSIDGVKKLVEQLKNEL   82 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999998775 46543322221 1211   11467899999999998877665      


Q ss_pred             -------CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcC
Q 040253           77 -------GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 -------~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                             ++|+|||+||......     .+..+..++.|+.++.++++++...- ...++|++||..++.          
T Consensus        83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~----------  152 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL----------  152 (254)
T ss_pred             ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC----------
Confidence                   4899999998644221     11124567799999999999887531 135899999987764          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCC-hhHHHhhhhcccCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAH  219 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~  219 (338)
                                  +..+...|+.+|.+.+.+++.++.+   .++++++++|+.++++....... ..+....    .....
T Consensus       153 ------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~----~~~~~  216 (254)
T PRK12746        153 ------------GFTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIRNFA----TNSSV  216 (254)
T ss_pred             ------------CCCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHHHHH----HhcCC
Confidence                        1123457999999999998888775   47999999999998875321111 1011100    01111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                      +     .++++++|+++++..++....   .++.|++.+.
T Consensus       217 ~-----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~  251 (254)
T PRK12746        217 F-----GRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG  251 (254)
T ss_pred             c-----CCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence            1     357899999999998887543   2456777543

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=2.1e-21  Score=166.49  Aligned_cols=223  Identities=17%  Similarity=0.147  Sum_probs=155.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+++|+||||+|+||.+++++|+++|++|++++|++............   ..++.++.+|+.|++++.++++    
T Consensus         1 ~~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~   77 (251)
T PRK07231          1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALE   77 (251)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            555678999999999999999999999999999999987655443322211   2468899999999998887764    


Q ss_pred             ---CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ---GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                         ++|+|||+++.....      ..+..+..++.|+.++.++++.+..    .+ .++||++||...+.          
T Consensus        78 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~----------  146 (251)
T PRK07231         78 RFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG-GGAIVNVASTAGLR----------  146 (251)
T ss_pred             HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhcC----------
Confidence               579999999863311      1223346788899887777766543    44 67899999987764          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +..+...|+.+|...+.+++.++.++   +++++.++||.+.++................... ..  
T Consensus       147 ------------~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~-~~--  211 (251)
T PRK07231        147 ------------PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLA-TI--  211 (251)
T ss_pred             ------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhc-CC--
Confidence                        11245589999999999998888764   8999999999997654222111000000000001 00  


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCCC--CCce-EEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPNA--KGRY-ICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~~--~~~~-~~~~  255 (338)
                         ....+++++|+|++++.++.....  .|.+ .+.+
T Consensus       212 ---~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~g  246 (251)
T PRK07231        212 ---PLGRLGTPEDIANAALFLASDEASWITGVTLVVDG  246 (251)
T ss_pred             ---CCCCCcCHHHHHHHHHHHhCccccCCCCCeEEECC
Confidence               114588999999999999975432  3444 4543

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.88  E-value=3e-21  Score=163.03  Aligned_cols=206  Identities=17%  Similarity=0.168  Sum_probs=144.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      ++|+++||||+|+||+++++.|+++ ++|++++|+......+....      ++++++.+|++|.+++.++++   ++|+
T Consensus         2 ~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~id~   74 (227)
T PRK08219          2 ERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL------PGATPFPVDLTDPEAIAAAVEQLGRLDV   74 (227)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh------ccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence            3679999999999999999999999 99999999865443332211      357899999999999888876   5999


Q ss_pred             EEEecccCCCCC-----CCccchhhhhhhHHHHHH----HHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDFES-----KDPENEVIRPTINGMVSI----MRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l----~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      |||+++......     .+.....++.|+.+...+    +++++..+  +++|++||...++.                 
T Consensus        75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~v~~ss~~~~~~-----------------  135 (227)
T PRK08219         75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH--GHVVFINSGAGLRA-----------------  135 (227)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEcchHhcCc-----------------
Confidence            999998644211     112234577888885444    44444443  68999999876641                 


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHc-C-ccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccc
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-N-IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV  229 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  229 (338)
                           ..+...|+.+|...+.+++.++.+. + +++..++|+.+.++....     ..   . ..+.  ..   ...+++
T Consensus       136 -----~~~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~-----~~---~-~~~~--~~---~~~~~~  196 (227)
T PRK08219        136 -----NPGWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQRG-----LV---A-QEGG--EY---DPERYL  196 (227)
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhhh-----hh---h-hhcc--cc---CCCCCC
Confidence                 1134579999999999888877654 5 899999998766543211     00   0 0011  11   114689


Q ss_pred             cHHHHHHHHHHhhcCCCCCCceEEe
Q 040253          230 HLDDLCSAHIFLFEHPNAKGRYICS  254 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~~~~~~~~  254 (338)
                      +++|++++++.+++++..+.++++.
T Consensus       197 ~~~dva~~~~~~l~~~~~~~~~~~~  221 (227)
T PRK08219        197 RPETVAKAVRFAVDAPPDAHITEVV  221 (227)
T ss_pred             CHHHHHHHHHHHHcCCCCCccceEE
Confidence            9999999999999987655566653

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.88  E-value=2.5e-21  Score=166.15  Aligned_cols=222  Identities=14%  Similarity=0.069  Sum_probs=151.5

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      ..+++||||||+|+||++++++|+++|++|++..|+... ... ...+...   ..++..+.+|+++.+++.++++    
T Consensus         4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (252)
T PRK06077          4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN---GGEGIGVLADVSTREGCETLAKATID   80 (252)
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc---CCeeEEEEeccCCHHHHHHHHHHHHH
Confidence            446899999999999999999999999999887764322 111 1111111   1356788999999987766654    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                         ++|+|||+||.....     .....+..++.|+.+..++++++...- ...+||++||...+.              
T Consensus        81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--------------  146 (252)
T PRK06077         81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR--------------  146 (252)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC--------------
Confidence               689999999863321     111124668899999999888876541 135899999987764              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                              +..+.+.|+.+|...|.+++.+++++  ++++.+++|+.+.++..... .................     .
T Consensus       147 --------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~-~~~~~~~~~~~~~~~~~-----~  212 (252)
T PRK06077        147 --------PAYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESL-FKVLGMSEKEFAEKFTL-----M  212 (252)
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhh-hhcccccHHHHHHhcCc-----C
Confidence                    11255689999999999999998886  68999999999977642110 00000000000000000     1


Q ss_pred             CccccHHHHHHHHHHhhcCCCC-CCceEEec
Q 040253          226 GQFVHLDDLCSAHIFLFEHPNA-KGRYICSS  255 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~~-~~~~~~~~  255 (338)
                      .++++++|+|+++..++..+.. ++.|++++
T Consensus       213 ~~~~~~~dva~~~~~~~~~~~~~g~~~~i~~  243 (252)
T PRK06077        213 GKILDPEEVAEFVAAILKIESITGQVFVLDS  243 (252)
T ss_pred             CCCCCHHHHHHHHHHHhCccccCCCeEEecC
Confidence            3689999999999999976544 55777754

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.87  E-value=6.8e-21  Score=163.87  Aligned_cols=217  Identities=16%  Similarity=0.144  Sum_probs=150.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+|+||||+|+||++++++|+++|++|++++|+... .... ..+..   ...++.++.+|++|++++.++++      
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRA---LGVEVIFFPADVADLSAHEAMLDAAQAAW   78 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999986432 2221 11111   11468999999999887766553      


Q ss_pred             -CccEEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHHhC----C--C---ccEEEEecCceeeeccCCCC
Q 040253           77 -GCTGVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACKNA----K--T---VRRLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~---~~~~v~~Ss~~v~~~~~~~~  139 (338)
                       .+|+|||+||.....       ..+..+..++.|+.++.++++++...    .  .   ..++|++||...+.  .   
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--~---  153 (256)
T PRK12745         79 GRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM--V---  153 (256)
T ss_pred             CCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc--C---
Confidence             689999999864311       11334567889999999998877432    1  1   45799999976653  1   


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN  216 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  216 (338)
                                       ..+...|+.+|.+.|.+++.++.+   +|++++++|||.+.++....... ......   ...
T Consensus       154 -----------------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~-~~~~~~---~~~  212 (256)
T PRK12745        154 -----------------SPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPVTA-KYDALI---AKG  212 (256)
T ss_pred             -----------------CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccccch-hHHhhh---hhc
Confidence                             113458999999999999999875   58999999999998865332111 111111   010


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      ....     .++.+.+|+++++..++....   .+..|++.+
T Consensus       213 ~~~~-----~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~g  249 (256)
T PRK12745        213 LVPM-----PRWGEPEDVARAVAALASGDLPYSTGQAIHVDG  249 (256)
T ss_pred             CCCc-----CCCcCHHHHHHHHHHHhCCcccccCCCEEEECC
Confidence            1111     458899999999999886532   234667754

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.5e-21  Score=168.76  Aligned_cols=225  Identities=17%  Similarity=0.117  Sum_probs=150.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +.+++|||||+|+||++++++|+++|++|++++|+.+....+......    .++.++.+|++|++++.++++       
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG----AKVTATVADVADPAQVERVFDTAVERFG   85 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc----CceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            358999999999999999999999999999999986654443322110    256889999999988777653       


Q ss_pred             CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHH----hCCCc-cEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACK----NAKTV-RRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~-~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|+|||+|+.....      ..+..++.++.|+.++.++++++.    ..+ . ++++++||.....  .         
T Consensus        86 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~~vv~~ss~~~~~--~---------  153 (264)
T PRK12829         86 GLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASG-HGGVIIALSSVAGRL--G---------  153 (264)
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCeEEEEeccccccc--C---------
Confidence            689999999865211      112335778999999999888763    333 3 6788888754331  0         


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC-CCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN-EAHYP  221 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~  221 (338)
                                 .++...|+.+|.+.|.+++.++.+.   +++++++|||.++|+.................... .....
T Consensus       154 -----------~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (264)
T PRK12829        154 -----------YPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLE  222 (264)
T ss_pred             -----------CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHh
Confidence                       0123479999999999999888764   89999999999999864321110000000000000 00000


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      .....++++++|+++++..++....   .+..|++++
T Consensus       223 ~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~  259 (264)
T PRK12829        223 KISLGRMVEPEDIAATALFLASPAARYITGQAISVDG  259 (264)
T ss_pred             cCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCC
Confidence            0011358999999999999886432   233566654

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.87  E-value=7.8e-21  Score=164.95  Aligned_cols=237  Identities=17%  Similarity=0.080  Sum_probs=156.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+..+.......  ....++.++.+|++|.+++.++++       
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLR--AEGFDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            46889999999999999999999999999999998655443322111  112467889999999998877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||....     ...+..+..+++|+.++.++.+++.    +.+...++|++||...+.              
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~--------------  148 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV--------------  148 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc--------------
Confidence            58999999986431     1112234567999999999888764    233246899999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC-
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII-  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  223 (338)
                              +..+...|+.+|...+.+.+.++.++   |+++++++|+.+.++.......  .................. 
T Consensus       149 --------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~~~~~  218 (275)
T PRK05876        149 --------PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSER--IRGAACAQSSTTGSPGPLP  218 (275)
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhh--hcCcccccccccccccccc
Confidence                    11245689999998666666665543   8999999999988764321100  000000000001111111 


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHh
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREK  270 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~  270 (338)
                      ...++++++|+|++++.++.+..   .|.+. .+....++.+.+.+.
T Consensus       219 ~~~~~~~~~dva~~~~~ai~~~~---~~~~~-~~~~~~~~~~~~~~~  261 (275)
T PRK05876        219 LQDDNLGVDDIAQLTADAILANR---LYVLP-HAASRASIRRRFERI  261 (275)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCC---eEEec-ChhhHHHHHHHHHHH
Confidence            12568999999999999998642   44443 445555555555443

>PRK06194 hypothetical protein; Provisional

Probab=99.87  E-value=2.9e-21  Score=168.98  Aligned_cols=218  Identities=13%  Similarity=0.029  Sum_probs=148.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++||||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       +
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   83 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA--QGAEVLGVRTDVSDAAQVEALADAALERFGA   83 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999976554433222111  12468889999999998887765       4


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHH----HHhCCC-----ccEEEEecCceeeeccCCCCCCcC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRA----CKNAKT-----VRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-----~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                      +|+|||+||.....     ..+.....+++|+.++.++.++    +.+.+.     ..++|++||...+.  ..      
T Consensus        84 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--~~------  155 (287)
T PRK06194         84 VHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL--AP------  155 (287)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc--CC------
Confidence            79999999975421     1122345688999999987776    344331     15899999987764  11      


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcC-----ccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN-----IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-  217 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-----~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-  217 (338)
                                    .+...|+.+|.+.+.+++.++.+++     +++..+.|+.+..+-..            ...+.+ 
T Consensus       156 --------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~------------~~~~~~~  209 (287)
T PRK06194        156 --------------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQ------------SERNRPA  209 (287)
T ss_pred             --------------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCcccc------------ccccCch
Confidence                          1345799999999999999887753     66666777655433211            001111 


Q ss_pred             CCCCCCC-CCccccHHHHHHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCC
Q 040253          218 AHYPIIK-QGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYP  272 (338)
Q Consensus       218 ~~~~~~~-~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~  272 (338)
                      .....+. .+++++++|++..+....              .++..|+++.+.+.+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~s~~dva~~i~~~~~  251 (287)
T PRK06194        210 DLANTAPPTRSQLIAQAMSQKAVGSG--------------KVTAEEVAQLVFDAIR  251 (287)
T ss_pred             hcccCccccchhhHHHHHHHhhhhcc--------------CCCHHHHHHHHHHHHH
Confidence            1222222 267888888887654221              1688888888887653

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.87  E-value=4.3e-21  Score=163.25  Aligned_cols=206  Identities=16%  Similarity=0.190  Sum_probs=149.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+++||||||+|+||++++++|+++|++|++++|++...... ..+..     .+++.+.+|+.|.+++.++++      
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA-----DALRIGGIDLVDPQAARRAVDEVNRQF   80 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh-----cCceEEEeecCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999999987553332 22211     356788899999888877664      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+++.....     ..+...+.+..|+.++.++++++.    ..+ .+++|++||...++..           
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~-----------  148 (239)
T PRK12828         81 GRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASG-GGRIVNIGAGAALKAG-----------  148 (239)
T ss_pred             CCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcC-CCEEEEECchHhccCC-----------
Confidence             689999999854311     111223557789999988888764    344 6899999998877411           


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                 .+...|+.+|...+.+++.++++   .+++++++||+.++++......                  +..
T Consensus       149 -----------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~------------------~~~  199 (239)
T PRK12828        149 -----------PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM------------------PDA  199 (239)
T ss_pred             -----------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC------------------Cch
Confidence                       13457999999999888877765   4899999999999987421110                  000


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                      ....+++++|+++++..++.....  .| .+++.+
T Consensus       200 ~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g  234 (239)
T PRK12828        200 DFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDG  234 (239)
T ss_pred             hhhcCCCHHHHHHHHHHHhCcccccccceEEEecC
Confidence            113489999999999999986432  34 445543

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.87  E-value=6.6e-21  Score=163.08  Aligned_cols=217  Identities=14%  Similarity=0.148  Sum_probs=150.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC-CCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +++++||||+|+||++++++|+++|++|+++.++ +..........  .....++.++.+|++|.+++.++++       
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNEL--GKEGHDVYAVQADVSKVEDANRLVEEAVNHFG   83 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHH--HhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999999876553 22222221111  1112468899999999988877665       


Q ss_pred             CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      .+|+|||+|+......     .+..++.++.|+.++..+++++..    .+ ..++|++||...+.  ..          
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~----------  150 (247)
T PRK12935         84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAE-EGRIISISSIIGQA--GG----------  150 (247)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchhhcC--CC----------
Confidence            4899999998654221     133456789999999999888764    23 46899999965542  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                                .+...|+.+|.+.+.+++.++.++   ++++++++|+.+.++.... .........  ..+.  .     
T Consensus       151 ----------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~-~~~~~~~~~--~~~~--~-----  210 (247)
T PRK12935        151 ----------FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE-VPEEVRQKI--VAKI--P-----  210 (247)
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh-ccHHHHHHH--HHhC--C-----
Confidence                      134589999999999888887764   8999999999997654221 111111111  0011  1     


Q ss_pred             CCccccHHHHHHHHHHhhcCC--CCCCceEEecC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP--NAKGRYICSSH  256 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~--~~~~~~~~~~~  256 (338)
                      ..++.+++|++++++.+++..  ..++.|++++.
T Consensus       211 ~~~~~~~edva~~~~~~~~~~~~~~g~~~~i~~g  244 (247)
T PRK12935        211 KKRFGQADEIAKGVVYLCRDGAYITGQQLNINGG  244 (247)
T ss_pred             CCCCcCHHHHHHHHHHHcCcccCccCCEEEeCCC
Confidence            146899999999999999754  23557887654

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.87  E-value=3.3e-21  Score=164.66  Aligned_cols=214  Identities=21%  Similarity=0.273  Sum_probs=151.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~v   81 (338)
                      +++++||||+|+||+++++.|+++|++|++++|+.++...+...       .+..++.+|++|.+.+.++++   ++|+|
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGE-------TGCEPLRLDVGDDAAIRAALAAAGAFDGL   81 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------hCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            47999999999999999999999999999999986554433321       135788899999888777765   58999


Q ss_pred             EEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           82 FHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        82 i~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      ||+|+.....     ..+..++.+..|+.++.++++++...    +...+||++||...+.  .                
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~--~----------------  143 (245)
T PRK07060         82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV--G----------------  143 (245)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC--C----------------
Confidence            9999864321     11233456779999999998887643    1136899999987664  1                


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccc
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV  229 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  229 (338)
                          ..+...|+.+|.++|.+++.+++++   +++++.+||+.++++...........  .......      ....+++
T Consensus       144 ----~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~  211 (245)
T PRK07060        144 ----LPDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQK--SGPMLAA------IPLGRFA  211 (245)
T ss_pred             ----CCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHH--HHHHHhc------CCCCCCC
Confidence                1134579999999999999988764   79999999999998763321111000  0000000      0114689


Q ss_pred             cHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          230 HLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                      +++|+++++..++..+..  .| .+++.+
T Consensus       212 ~~~d~a~~~~~l~~~~~~~~~G~~~~~~~  240 (245)
T PRK07060        212 EVDDVAAPILFLLSDAASMVSGVSLPVDG  240 (245)
T ss_pred             CHHHHHHHHHHHcCcccCCccCcEEeECC
Confidence            999999999999976432  34 445543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.87  E-value=2e-21  Score=167.46  Aligned_cols=230  Identities=13%  Similarity=0.074  Sum_probs=149.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      .++|+||||+|+||.+++++|+++|++|++++|+..................++.++.+|++|.+++.++++       +
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999866544433221111111358899999999887776553       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||.....     ..+..+..++.|+.++..+++++..    .+...++|++||.....  ..           
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~--~~-----------  148 (259)
T PRK12384         82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKV--GS-----------  148 (259)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCccccc--CC-----------
Confidence            89999999854321     1122345678999998877766643    23125899999864321  00           


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-CCCC-CC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-AHYP-II  223 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~  223 (338)
                               .....|+.+|.+.+.+++.++.+   +|++++++|||.++++.........+........+.. ..+. ..
T Consensus       149 ---------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (259)
T PRK12384        149 ---------KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYAKKLGIKPDEVEQYYIDKV  219 (259)
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhhhhHHHHHhcCCChHHHHHHHHHhC
Confidence                     12347999999999988888754   5999999999998876432211111000000000000 0000 01


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC---CCceEEecC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSSH  256 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~~  256 (338)
                      ...++++++|+++++..++.+...   +..|++++.
T Consensus       220 ~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g  255 (259)
T PRK12384        220 PLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGG  255 (259)
T ss_pred             cccCCCCHHHHHHHHHHHcCcccccccCceEEEcCC
Confidence            125689999999999999875432   346777543

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.87  E-value=1.8e-21  Score=167.72  Aligned_cols=214  Identities=17%  Similarity=0.141  Sum_probs=150.3

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |-...|+||||||+|+||++++++|+++|++|++++|++...+........  ...++.++.+|++|.+++.++++    
T Consensus         1 ~~l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (258)
T PRK07890          1 MLLKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD--LGRRALAVPTDITDEDQCANLVALALE   78 (258)
T ss_pred             CccCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH--hCCceEEEecCCCCHHHHHHHHHHHHH
Confidence            444578999999999999999999999999999999987554443322211  11468899999999988776553    


Q ss_pred             ---CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 ---GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                         ++|+|||+|+....      ...+..+..++.|+.++..+++++...-  ...++|++||...+.            
T Consensus        79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~------------  146 (258)
T PRK07890         79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRH------------  146 (258)
T ss_pred             HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhcc------------
Confidence               68999999986431      1112335678899999999999886531  135899999976543            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh-------HHHhhhhccc
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS-------LITALSPITR  215 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~-------~~~~~~~~~~  215 (338)
                                +..+...|+.+|...+.+++.++.++   ++++++++||.++++.........       ..........
T Consensus       147 ----------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (258)
T PRK07890        147 ----------SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAA  216 (258)
T ss_pred             ----------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhh
Confidence                      11234589999999999999988764   899999999999998632211000       0000000000


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      . .     ...++.+++|+++++..++..
T Consensus       217 ~-~-----~~~~~~~~~dva~a~~~l~~~  239 (258)
T PRK07890        217 N-S-----DLKRLPTDDEVASAVLFLASD  239 (258)
T ss_pred             c-C-----CccccCCHHHHHHHHHHHcCH
Confidence            0 0     113478899999999998875

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.86  E-value=2.2e-21  Score=168.28  Aligned_cols=214  Identities=18%  Similarity=0.159  Sum_probs=149.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++|+||||+|+||++++++|+++|++|++++|++......          .+++++++|++|++++.++++       .
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   73 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI----------PGVELLELDVTDDASVQAAVDEVIARAGR   73 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc----------CCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999976543211          467899999999998888775       4


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||.....     ..+.....+++|+.++.++++++    ++.+ .+++|++||...+.  .            
T Consensus        74 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~--~------------  138 (270)
T PRK06179         74 IDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSVLGFL--P------------  138 (270)
T ss_pred             CCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCccccC--C------------
Confidence            79999999864421     11223567889999988888774    4455 68999999976553  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCCh--hHH--HhhhhcccCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPP--SLI--TALSPITRNEAHYP  221 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~--~~~--~~~~~~~~~~~~~~  221 (338)
                              .+....|+.+|...+.+++.++.+   +|+++++++||.+.++........  .+.  ..........  . 
T Consensus       139 --------~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~-  207 (270)
T PRK06179        139 --------APYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKA--V-  207 (270)
T ss_pred             --------CCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhhHHHHHHHHHH--H-
Confidence                    112348999999999998888765   499999999999987753321100  000  0000000000  0 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCCCCceEEe
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICS  254 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~  254 (338)
                      ..........+|+++.++.++..+.....|..+
T Consensus       208 ~~~~~~~~~~~~va~~~~~~~~~~~~~~~~~~~  240 (270)
T PRK06179        208 AKAVKKADAPEVVADTVVKAALGPWPKMRYTAG  240 (270)
T ss_pred             HhccccCCCHHHHHHHHHHHHcCCCCCeeEecC
Confidence            000023567899999999999876555556543

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.86  E-value=2.1e-20  Score=162.61  Aligned_cols=217  Identities=16%  Similarity=0.145  Sum_probs=146.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++++|+||||+|+||++++++|.++|++|++++|+++....+..        .+++++.+|++|.+++.++++       
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   74 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEA--------EGLEAFQLDYAEPESIAALVAQVLELSG   74 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------CCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999999999998765544332        357889999999887766553       


Q ss_pred             -CccEEEEecccCCCCC-----CCccchhhhhhhHH----HHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFES-----KDPENEVIRPTING----MVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~----~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+||......     .+..+..+++|+.+    +..+++.+++.+ ..++|++||...+.             
T Consensus        75 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~-------------  140 (277)
T PRK05993         75 GRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSSILGLV-------------  140 (277)
T ss_pred             CCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECChhhcC-------------
Confidence             4799999998543211     11224578899988    555666677666 67999999965442             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhc----------
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPI----------  213 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~----------  213 (338)
                               +..+...|+.+|.+.|.+++.++.+   +|+++++++||.+-.+....... .+.......          
T Consensus       141 ---------~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~~~~~~~~~~~  210 (277)
T PRK05993        141 ---------PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRFRANALA-AFKRWIDIENSVHRAAYQQ  210 (277)
T ss_pred             ---------CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCchhhHHHH-HHhhhhccccchhHHHHHH
Confidence                     1124458999999999998887754   48999999999886553221100 000000000          


Q ss_pred             -ccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCceEE
Q 040253          214 -TRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYIC  253 (338)
Q Consensus       214 -~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~  253 (338)
                       ....... .......+..+++++.+..+++++.....|.+
T Consensus       211 ~~~~~~~~-~~~~~~~~~~~~va~~i~~a~~~~~~~~~~~~  250 (277)
T PRK05993        211 QMARLEGG-GSKSRFKLGPEAVYAVLLHALTAPRPRPHYRV  250 (277)
T ss_pred             HHHHHHhh-hhccccCCCHHHHHHHHHHHHcCCCCCCeeee
Confidence             0000000 00001246789999999999987654444544

>PRK06128 oxidoreductase; Provisional

Probab=99.86  E-value=2.6e-20  Score=163.82  Aligned_cols=218  Identities=14%  Similarity=0.156  Sum_probs=153.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+||||||+|+||++++++|++.|++|++..|+.+.  ..........  ...++.++.+|++|.+++.++++      
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQA--EGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999888775432  2222221111  12467889999999988777653      


Q ss_pred             -CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|+|||+||....      ...+..+..+++|+.++..+++++...- ...++|++||...|...             
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~-------------  199 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS-------------  199 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC-------------
Confidence             68999999985321      1223445789999999999999887531 13589999998877411             


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC-CChhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS-MPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               .....|+.+|.+.+.+++.++.+.   |+++++++||.+.++..... .........    +.....    
T Consensus       200 ---------~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~----~~~~p~----  262 (300)
T PRK06128        200 ---------PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDF----GSETPM----  262 (300)
T ss_pred             ---------CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHH----hcCCCC----
Confidence                     123479999999999999988774   89999999999998864321 111111101    111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                       .++...+|++.++.+++.....   +..+++++
T Consensus       263 -~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~g  295 (300)
T PRK06128        263 -KRPGQPVEMAPLYVLLASQESSYVTGEVFGVTG  295 (300)
T ss_pred             -CCCcCHHHHHHHHHHHhCccccCccCcEEeeCC
Confidence             4578999999999999875432   34566644

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.86  E-value=1e-20  Score=162.14  Aligned_cols=217  Identities=19%  Similarity=0.175  Sum_probs=152.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++||||||+|+||++++++|++.|++|++++|+.+....+.......  ..++.++.+|++|.+++.++++       +
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK--GGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999999999999999876554443322111  2468999999999988877664       5


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+++.....     ..+..+..++.|+.+..++++++.    +.+ .+++|++||...++..             
T Consensus        81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~iss~~~~~~~-------------  146 (250)
T TIGR03206        81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG-AGRIVNIASDAARVGS-------------  146 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEECchhhccCC-------------
Confidence            89999999854311     111224568899999999887764    344 5789999998777411             


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-----ChhHHHhhhhcccCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-----PPSLITALSPITRNEAHY  220 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~  220 (338)
                               .....|+.+|.+.+.+++.++.+.   +++++++||+.++++......     ...+.....   .. ...
T Consensus       147 ---------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~  213 (250)
T TIGR03206       147 ---------SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFT---RA-IPL  213 (250)
T ss_pred             ---------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHH---hc-CCc
Confidence                     123479999999999999888775   899999999999887422110     000111000   11 111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                           ..+...+|+|+++..++.....   +..+++++
T Consensus       214 -----~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~  246 (250)
T TIGR03206       214 -----GRLGQPDDLPGAILFFSSDDASFITGQVLSVSG  246 (250)
T ss_pred             -----cCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCC
Confidence                 2467789999999999876432   33555543

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.86  E-value=1.5e-20  Score=161.09  Aligned_cols=219  Identities=17%  Similarity=0.155  Sum_probs=148.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +++++||||+|+||++++++|+++|++|+++ .|+.+..........  ....++.++.+|++|++++.++++       
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE--ALGRKALAVKANVGDVEKIKEMFAQIDEEFG   81 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999998764 666544333222111  112468899999999998877665       


Q ss_pred             CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      ++|+|||+|+......     .+.....+++|+.++..+++++....   ..++||++||...+.               
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~---------------  146 (250)
T PRK08063         82 RLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIR---------------  146 (250)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcc---------------
Confidence            5899999998543111     11122357799999999888776432   146999999975542               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +..+...|+.+|.+.|.+++.++.+   .|+++++++|+.+..+.... ...... ........ ...     
T Consensus       147 -------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~-~~~~~~-~~~~~~~~-~~~-----  211 (250)
T PRK08063        147 -------YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKH-FPNREE-LLEDARAK-TPA-----  211 (250)
T ss_pred             -------CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhh-ccCchH-HHHHHhcC-CCC-----
Confidence                   1123458999999999999998876   48999999999998765321 110000 00000011 111     


Q ss_pred             CccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          226 GQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      .++++.+|+++++..++..+..   +..+++.+
T Consensus       212 ~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g  244 (250)
T PRK08063        212 GRMVEPEDVANAVLFLCSPEADMIRGQTIIVDG  244 (250)
T ss_pred             CCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence            3479999999999999976432   33556644

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.86  E-value=9.4e-21  Score=163.18  Aligned_cols=230  Identities=16%  Similarity=0.200  Sum_probs=156.0

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      +..+++|+||||+|.||.+++++|+++|++|++++|+++.......+..   ...++.++.+|+++.+++.++++     
T Consensus         4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (258)
T PRK08628          4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRA---LQPRAEFVQVDLTDDAQCRDAVEQTVAK   80 (258)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            3346899999999999999999999999999999998765522222221   12568999999999988877664     


Q ss_pred             --CccEEEEecccCCCC----CCCccchhhhhhhHHHHHHHHHHHh---CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 --GCTGVFHLATPMDFE----SKDPENEVIRPTINGMVSIMRACKN---AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                        ++|+|||+||.....    ..+..+..++.|+.+...+.+++..   .+ ..+|+++||...+.  .           
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~--~-----------  146 (258)
T PRK08628         81 FGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKAS-RGAIVNISSKTALT--G-----------  146 (258)
T ss_pred             cCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhcc-CcEEEEECCHHhcc--C-----------
Confidence              589999999853311    1123446788899998888877643   22 36899999976653  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCC--hhHHHhhhhcccCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMP--PSLITALSPITRNEAHYPI  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~  222 (338)
                               ..+...|+.+|...+.+++.++.+   .+++++.++||.++++.......  .............   .+.
T Consensus       147 ---------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---~~~  214 (258)
T PRK08628        147 ---------QGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAK---IPL  214 (258)
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhc---CCc
Confidence                     113458999999999999998865   48999999999999875221000  0000000000011   111


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEecCCCCHHH
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSSHPATILE  262 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~~~~t~~e  262 (338)
                      +  .+++..+|++++++.++....  ..| .+.+.+....+++
T Consensus       215 ~--~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~  255 (258)
T PRK08628        215 G--HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR  255 (258)
T ss_pred             c--ccCCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence            1  247889999999999997642  234 4455554444443

>PRK05717 oxidoreductase; Validated

Probab=99.86  E-value=3.1e-20  Score=159.64  Aligned_cols=206  Identities=17%  Similarity=0.144  Sum_probs=145.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+...........     ..++.++.+|++|.+++.++++       
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   83 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVADEAQVAAGVAEVLGQFG   83 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999988765443332211     1467899999999887765543       


Q ss_pred             CccEEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+|+.....       ..+..+..++.|+.++.++++++...  ....++|++||...+.  ..          
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~--~~----------  151 (255)
T PRK05717         84 RLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ--SE----------  151 (255)
T ss_pred             CCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC--CC----------
Confidence            589999999865321       11223467899999999999998642  1135899999976553  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                                ...+.|+.+|.+.+.+++.++.++  ++++++++||.+.++..............   ... ..     .
T Consensus       152 ----------~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~---~~~-~~-----~  212 (255)
T PRK05717        152 ----------PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAEPLSEAD---HAQ-HP-----A  212 (255)
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccchHHHHHH---hhc-CC-----C
Confidence                      123479999999999999999886  58999999999988753211111110000   000 01     1


Q ss_pred             CccccHHHHHHHHHHhhcCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .++.+.+|++.++..++...
T Consensus       213 ~~~~~~~~va~~~~~l~~~~  232 (255)
T PRK05717        213 GRVGTVEDVAAMVAWLLSRQ  232 (255)
T ss_pred             CCCcCHHHHHHHHHHHcCch
Confidence            35789999999999888653

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.86  E-value=2.4e-20  Score=158.76  Aligned_cols=199  Identities=18%  Similarity=0.174  Sum_probs=145.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++++||||+|+||.+++++|+++|++|++++|++............  ...++.++.+|+++++++.++++       +
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEA--YGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999986554433222111  12478899999999998877765       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+++.....     ..+..++.++.|+.++.++.+++..    .+ .+++|++||...+.  .            
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~--~------------  149 (239)
T PRK07666         85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ-SGDIINISSTAGQK--G------------  149 (239)
T ss_pred             ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEEcchhhcc--C------------
Confidence            89999999864321     1122346789999999888887753    34 57899999976553  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                              ..+...|+.+|.+.+.+++.++.+   .|++++++|||.+.++.....         . ...       ...
T Consensus       150 --------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~---------~-~~~-------~~~  204 (239)
T PRK07666        150 --------AAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL---------G-LTD-------GNP  204 (239)
T ss_pred             --------CCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc---------c-ccc-------cCC
Confidence                    113447999999999998887755   489999999999887642110         0 000       011


Q ss_pred             CccccHHHHHHHHHHhhcCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..++..+|+++++..++..+
T Consensus       205 ~~~~~~~~~a~~~~~~l~~~  224 (239)
T PRK07666        205 DKVMQPEDLAEFIVAQLKLN  224 (239)
T ss_pred             CCCCCHHHHHHHHHHHHhCC
Confidence            34678999999999999875

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.86  E-value=4.2e-20  Score=159.62  Aligned_cols=206  Identities=17%  Similarity=0.144  Sum_probs=147.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++||||||+|+||++++++|+++|++|++++|++.+.+.......  ....++.++.+|++|.+.+.++++       +
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELA--DHGGEALVVPTDVSDAEACERLIEAAVARFGG   78 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4689999999999999999999999999999998655443322211  112468889999999988877664       6


Q ss_pred             ccEEEEecccCCCCC------CCccchhhhhhhHHHHHHHHHHHh---CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFES------KDPENEVIRPTINGMVSIMRACKN---AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+|+......      .+...+.++.|+.++.++++.+..   .+ ..++|++||...+.  .            
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~iv~~sS~~~~~--~------------  143 (263)
T PRK06181         79 IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS-RGQIVVVSSLAGLT--G------------  143 (263)
T ss_pred             CCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCEEEEEecccccC--C------------
Confidence            899999998644221      111245689999999999988753   22 46899999987764  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                              ..+...|+.+|...+.+.+.++.+   .++++++++||.+..+........         .+..........
T Consensus       144 --------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~---------~~~~~~~~~~~~  206 (263)
T PRK06181        144 --------VPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKRALDG---------DGKPLGKSPMQE  206 (263)
T ss_pred             --------CCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchhhccc---------cccccccccccc
Confidence                    123458999999999998887654   389999999999876542211000         011110011111


Q ss_pred             CccccHHHHHHHHHHhhcC
Q 040253          226 GQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~  244 (338)
                      .++++++|+++++..+++.
T Consensus       207 ~~~~~~~dva~~i~~~~~~  225 (263)
T PRK06181        207 SKIMSAEECAEAILPAIAR  225 (263)
T ss_pred             cCCCCHHHHHHHHHHHhhC
Confidence            4689999999999999985

>PRK09186 flagellin modification protein A; Provisional

Probab=99.86  E-value=4.6e-20  Score=158.70  Aligned_cols=216  Identities=22%  Similarity=0.238  Sum_probs=143.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||.+++++|+++|++|++++|+++.................+.++.+|++|++++.++++       
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999876654432221111111356778999999998887765       


Q ss_pred             CccEEEEecccCCCC--------CCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 GCTGVFHLATPMDFE--------SKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                      ++|+|||+|+.....        ..+.....++.|+.+...++++    +++.+ .+++|++||...+.  .... ...+
T Consensus        83 ~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~~~-~~~~  158 (256)
T PRK09186         83 KIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG-GGNLVNISSIYGVV--APKF-EIYE  158 (256)
T ss_pred             CccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC-CceEEEEechhhhc--cccc-hhcc
Confidence            389999999743211        1112235567787776655544    44455 57999999976543  1111 1112


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                      ..         +..+...|+.+|...+.+.+.++++   .++++++++||.++++.     ...+.....   ... .  
T Consensus       159 ~~---------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~-----~~~~~~~~~---~~~-~--  218 (256)
T PRK09186        159 GT---------SMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQ-----PEAFLNAYK---KCC-N--  218 (256)
T ss_pred             cc---------ccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCC-----CHHHHHHHH---hcC-C--
Confidence            21         1112237999999999999888876   37999999999887543     111111111   111 0  


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                         ...+++.+|+|+++..++....
T Consensus       219 ---~~~~~~~~dva~~~~~l~~~~~  240 (256)
T PRK09186        219 ---GKGMLDPDDICGTLVFLLSDQS  240 (256)
T ss_pred             ---ccCCCCHHHhhhhHhheecccc
Confidence               1458999999999999997543

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.86  E-value=4.9e-20  Score=157.81  Aligned_cols=210  Identities=18%  Similarity=0.170  Sum_probs=148.3

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhc-CCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      |.. ++|+|+||||+|+||++++++|+++|++|++++|... ..+....+.. ......++.++.+|+.|.+++.++++ 
T Consensus         1 ~~~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          1 MASLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence            443 3689999999999999999999999999999877432 2222222111 11112468899999999988877663 


Q ss_pred             ------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH-----hCCCccEEEEecCceeeeccCCCCC
Q 040253           77 ------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK-----NAKTVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        77 ------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                            ++|+|||+||.....     ..+.....++.|+.++.++++++.     +.+ .+++|++||...+.  .    
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~--~----  153 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARR-GGRIVNIASVAGVR--G----  153 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC-CeEEEEECCchhcC--C----
Confidence                  589999999865421     112234578899999999999887     344 57899999977664  1    


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE  217 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  217 (338)
                                      ..+...|+.+|.+.+.+++.++.+.   +++++++|||.+.++........  .....   ..+
T Consensus       154 ----------------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~--~~~~~---~~~  212 (249)
T PRK12827        154 ----------------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT--EHLLN---PVP  212 (249)
T ss_pred             ----------------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH--HHHHh---hCC
Confidence                            1134579999999999998888764   89999999999998764332211  01000   111


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        .     ..+.+.+|+++++..++...
T Consensus       213 --~-----~~~~~~~~va~~~~~l~~~~  233 (249)
T PRK12827        213 --V-----QRLGEPDEVAALVAFLVSDA  233 (249)
T ss_pred             --C-----cCCcCHHHHHHHHHHHcCcc
Confidence              1     23568899999999988653

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.86  E-value=8.9e-20  Score=156.01  Aligned_cols=220  Identities=16%  Similarity=0.161  Sum_probs=149.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |...+++|+||||+|+||++++++|+++|++|+++.|+... .........  ....++.++.+|+++.+++.++++   
T Consensus         1 ~~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~   78 (248)
T PRK05557          1 MSLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIG--ALGGKALAVQGDVSDAESVERAVDEAK   78 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence            55667899999999999999999999999999888886543 222222111  112568899999999988877654   


Q ss_pred             ----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                          ++|+|||+|+.....     ..+..+..+..|+.++.++++++...    + .++||++||.....  ..      
T Consensus        79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~iss~~~~~--~~------  149 (248)
T PRK05557         79 AEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQR-SGRIINISSVVGLM--GN------  149 (248)
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEEcccccCc--CC------
Confidence                689999999864421     11223356778999999988887643    3 56899999964332  10      


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                    .....|+.+|.+.+.+++.++++.   ++++++++|+.+.++........ .....   ... ...
T Consensus       150 --------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~~~~~-~~~~~---~~~-~~~  210 (248)
T PRK05557        150 --------------PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDALPED-VKEAI---LAQ-IPL  210 (248)
T ss_pred             --------------CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccccChH-HHHHH---Hhc-CCC
Confidence                          124479999999998888777653   89999999998865543221111 11100   011 011


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcC--CCCC-CceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEH--PNAK-GRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~--~~~~-~~~~~~~  255 (338)
                           ..+.+++|+++++..++..  .... ..|++.+
T Consensus       211 -----~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~  243 (248)
T PRK05557        211 -----GRLGQPEEIASAVAFLASDEAAYITGQTLHVNG  243 (248)
T ss_pred             -----CCCcCHHHHHHHHHHHcCcccCCccccEEEecC
Confidence                 3478999999999988865  2223 3566643

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.85  E-value=4.7e-20  Score=157.87  Aligned_cols=203  Identities=19%  Similarity=0.203  Sum_probs=143.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |+|+||||+|+||.++++.|+++|++|++++|+++....+....     ..++.++.+|+.|.+++.++++       ++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   75 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRNRAAIEEMLASLPAEWRNI   75 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            58999999999999999999999999999999876544433221     1468899999999988776653       69


Q ss_pred             cEEEEecccCC------CCCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           79 TGVFHLATPMD------FESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        79 d~vi~~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      |+|||+||...      ....+..+..++.|+.++..+++++    .+.+ .+++|++||...+.               
T Consensus        76 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~---------------  139 (248)
T PRK10538         76 DVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGSTAGSW---------------  139 (248)
T ss_pred             CEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCcccCC---------------
Confidence            99999998532      1112233567889999866665554    4445 67899999975442               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC-CChhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS-MPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                             +..+...|+.+|...+.+.+.++.+.   ++++++++||.+.|+..... ........     .  ..+   .
T Consensus       140 -------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~~~~-----~--~~~---~  202 (248)
T PRK10538        140 -------PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKA-----E--KTY---Q  202 (248)
T ss_pred             -------CCCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcHHHH-----H--hhc---c
Confidence                   11234589999999999999988765   79999999999986642210 00000000     0  000   0


Q ss_pred             CCccccHHHHHHHHHHhhcCCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ...++..+|+|++++.++..+.
T Consensus       203 ~~~~~~~~dvA~~~~~l~~~~~  224 (248)
T PRK10538        203 NTVALTPEDVSEAVWWVATLPA  224 (248)
T ss_pred             ccCCCCHHHHHHHHHHHhcCCC
Confidence            1246789999999999997653

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.85  E-value=7.3e-20  Score=156.68  Aligned_cols=218  Identities=16%  Similarity=0.151  Sum_probs=151.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|+|+||||+|+||.+++++|+++|++|++++|+... .....+...   ..++.++.+|+++.+++.++++    
T Consensus         1 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~-~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (248)
T TIGR01832         1 FSLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPS-ETQQQVEAL---GRRFLSLTADLSDIEAIKALVDSAVE   76 (248)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHH-HHHHHHHhc---CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            44567999999999999999999999999999999986521 111222211   1468899999999988876553    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|++||+|+.....     ..+..++.++.|+.+...+++++...    +...++|++||...+.  ..       
T Consensus        77 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--~~-------  147 (248)
T TIGR01832        77 EFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQ--GG-------  147 (248)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhcc--CC-------
Confidence               589999999864421     11233466889999999988877532    2136899999987764  11       


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                   .....|+.+|.+.+.+++.+++++   |+++++++||.+..+...........  .......   .+
T Consensus       148 -------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~--~~~~~~~---~~  209 (248)
T TIGR01832       148 -------------IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDR--NAAILER---IP  209 (248)
T ss_pred             -------------CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHH--HHHHHhc---CC
Confidence                         123379999999999999999885   89999999999987642211100000  0000011   11


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC--CCceE
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA--KGRYI  252 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~--~~~~~  252 (338)
                         ..+++..+|+|+++++++.....  .|.++
T Consensus       210 ---~~~~~~~~dva~~~~~l~s~~~~~~~G~~i  239 (248)
T TIGR01832       210 ---AGRWGTPDDIGGPAVFLASSASDYVNGYTL  239 (248)
T ss_pred             ---CCCCcCHHHHHHHHHHHcCccccCcCCcEE
Confidence               14689999999999999975332  35443

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.85  E-value=5.6e-20  Score=157.87  Aligned_cols=208  Identities=13%  Similarity=0.106  Sum_probs=144.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |+.+.|+|+||||+|+||+++++.|+++|++|++..++.. ....+....  .   .++.++++|+.|.+++.++++   
T Consensus         1 ~~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~--~---~~~~~~~~D~~~~~~~~~~~~~~~   75 (253)
T PRK08642          1 MQISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL--G---DRAIALQADVTDREQVQAMFATAT   75 (253)
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh--C---CceEEEEcCCCCHHHHHHHHHHHH
Confidence            5666789999999999999999999999999988766432 222222111  1   468899999999988877664   


Q ss_pred             ----C-ccEEEEecccCC-----------CCCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccC
Q 040253           77 ----G-CTGVFHLATPMD-----------FESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        77 ----~-~d~vi~~a~~~~-----------~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~  136 (338)
                          . +|++||+|+...           ....+...+.++.|+.++.++++++..    .+ ..++|++||.....   
T Consensus        76 ~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~---  151 (253)
T PRK08642         76 EHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQG-FGRIINIGTNLFQN---  151 (253)
T ss_pred             HHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC-CeEEEEECCccccC---
Confidence                2 899999997421           001112345689999999999988753    33 46899999853321   


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhc
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPI  213 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  213 (338)
                                         +..+.+.|+.+|.+.|.+++.+++++   |++++.++||.+..+..............   
T Consensus       152 -------------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~---  209 (253)
T PRK08642        152 -------------------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAATPDEVFDLI---  209 (253)
T ss_pred             -------------------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccCCHHHHHHH---
Confidence                               11245589999999999999998874   79999999998865432211111111111   


Q ss_pred             ccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          214 TRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       .....+     ..+.+.+|+++++..++...
T Consensus       210 -~~~~~~-----~~~~~~~~va~~~~~l~~~~  235 (253)
T PRK08642        210 -AATTPL-----RKVTTPQEFADAVLFFASPW  235 (253)
T ss_pred             -HhcCCc-----CCCCCHHHHHHHHHHHcCch
Confidence             111111     45899999999999999753

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.85  E-value=7.1e-20  Score=156.90  Aligned_cols=208  Identities=20%  Similarity=0.166  Sum_probs=146.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++++||||+|.||++++++|+++|++|++++|+++..........  ....++.++.+|++|.+++.++++       +
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE--AAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--hcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999999987665443322111  112468999999999998877663       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      +|+|||+++.....     ..+..+..++.|+.++.++++++...-   ...+||++||...+.  .             
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--~-------------  149 (250)
T PRK12939         85 LDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW--G-------------  149 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc--C-------------
Confidence            89999999864321     112234567899999999988875431   135899999976553  1             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                             ......|+.+|...+.+++.++.++   ++++++++||.+..+...............   .. ..     ..
T Consensus       150 -------~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~---~~-~~-----~~  213 (250)
T PRK12939        150 -------APKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPADERHAYYL---KG-RA-----LE  213 (250)
T ss_pred             -------CCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCChHHHHHHH---hc-CC-----CC
Confidence                   1123479999999999999887664   799999999988766432211101111110   11 11     14


Q ss_pred             ccccHHHHHHHHHHhhcCC
Q 040253          227 QFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~  245 (338)
                      .+++++|+++++..++...
T Consensus       214 ~~~~~~dva~~~~~l~~~~  232 (250)
T PRK12939        214 RLQVPDDVAGAVLFLLSDA  232 (250)
T ss_pred             CCCCHHHHHHHHHHHhCcc
Confidence            5899999999999999764

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.85  E-value=5.8e-21  Score=161.90  Aligned_cols=219  Identities=23%  Similarity=0.322  Sum_probs=150.4

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEeccc
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATP   87 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   87 (338)
                      |+|+||||.+|+++++.|++.+++|.++.|+.++. ..+.+..     .+++++.+|+.|.+.+.++|+++|+||.+.+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~-~~~~l~~-----~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSD-RAQQLQA-----LGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHH-HHHHHHH-----TTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchh-hhhhhhc-----ccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            79999999999999999999999999999987432 2222222     46789999999999999999999999988875


Q ss_pred             CCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHH
Q 040253           88 MDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK  167 (338)
Q Consensus        88 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK  167 (338)
                      ..           ........++++++++.+ +++||+.|-...+.          +..         ...|.......|
T Consensus        75 ~~-----------~~~~~~~~~li~Aa~~ag-Vk~~v~ss~~~~~~----------~~~---------~~~p~~~~~~~k  123 (233)
T PF05368_consen   75 SH-----------PSELEQQKNLIDAAKAAG-VKHFVPSSFGADYD----------ESS---------GSEPEIPHFDQK  123 (233)
T ss_dssp             SC-----------CCHHHHHHHHHHHHHHHT--SEEEESEESSGTT----------TTT---------TSTTHHHHHHHH
T ss_pred             ch-----------hhhhhhhhhHHHhhhccc-cceEEEEEeccccc----------ccc---------cccccchhhhhh
Confidence            33           112344688999999999 99999654322220          110         111333556678


Q ss_pred             HHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC--CCCC-CCC-CCccc-cHHHHHHHHHHhh
Q 040253          168 TLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE--AHYP-IIK-QGQFV-HLDDLCSAHIFLF  242 (338)
Q Consensus       168 ~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~-~~~~i-~v~D~a~~~~~~l  242 (338)
                      ...|+.+++    .+++++++|++.++.......     .. .....+..  ..+. .+. ...++ ..+|++++++.++
T Consensus       124 ~~ie~~l~~----~~i~~t~i~~g~f~e~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il  193 (233)
T PF05368_consen  124 AEIEEYLRE----SGIPYTIIRPGFFMENLLPPF-----AP-VVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAIL  193 (233)
T ss_dssp             HHHHHHHHH----CTSEBEEEEE-EEHHHHHTTT-----HH-TTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHH
T ss_pred             hhhhhhhhh----ccccceeccccchhhhhhhhh-----cc-cccccccceEEEEccCCCccccccccHHHHHHHHHHHH
Confidence            888887754    599999999998876432110     00 00111111  1222 222 24464 9999999999999


Q ss_pred             cCCCCC--C-ceEEecCCCCHHHHHHHHHHhCCC
Q 040253          243 EHPNAK--G-RYICSSHPATILELAKFLREKYPE  273 (338)
Q Consensus       243 ~~~~~~--~-~~~~~~~~~t~~e~~~~i~~~~~~  273 (338)
                      ..+...  + .+.++++.+|+.|+++.+.+.+|+
T Consensus       194 ~~p~~~~~~~~~~~~~~~~t~~eia~~~s~~~G~  227 (233)
T PF05368_consen  194 LDPEKHNNGKTIFLAGETLTYNEIAAILSKVLGK  227 (233)
T ss_dssp             HSGGGTTEEEEEEEGGGEEEHHHHHHHHHHHHTS
T ss_pred             cChHHhcCCEEEEeCCCCCCHHHHHHHHHHHHCC
Confidence            987654  3 346677889999999999999885

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.85  E-value=2.1e-20  Score=160.40  Aligned_cols=207  Identities=14%  Similarity=0.102  Sum_probs=145.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ..|++|||||+|+||++++++|+++|++|++++|+..     ..      ...++..+++|++|.+++.++++       
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~-----~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFL-----TQ------EDYPFATFVLDVSDAAAVAQVCQRLLAETG   75 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchh-----hh------cCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3589999999999999999999999999999999751     00      11468899999999988887764       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+++.....     ..+.....++.|+.+...+++++..    .+ ..++|++||.....              
T Consensus        76 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~~ss~~~~~--------------  140 (252)
T PRK08220         76 PLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQR-SGAIVTVGSNAAHV--------------  140 (252)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCchhcc--------------
Confidence            489999999865421     1223446788999999999888743    33 46899999975432              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC-
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII-  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  223 (338)
                              +..+...|+.+|...+.+++.++.+   +++++++++|+.++++............. ....+....+... 
T Consensus       141 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  211 (252)
T PRK08220        141 --------PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQ-QVIAGFPEQFKLGI  211 (252)
T ss_pred             --------CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhh-hhhhhHHHHHhhcC
Confidence                    1123458999999999999998877   58999999999999885322110000000 0000000000000 


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...++++++|+|++++.++...
T Consensus       212 ~~~~~~~~~dva~~~~~l~~~~  233 (252)
T PRK08220        212 PLGKIARPQEIANAVLFLASDL  233 (252)
T ss_pred             CCcccCCHHHHHHHHHHHhcch
Confidence            1146899999999999998653

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.85  E-value=5.1e-20  Score=157.64  Aligned_cols=219  Identities=16%  Similarity=0.136  Sum_probs=146.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .++++||||+|+||++++++|+++|++|++..++.. ..........  ....++.++.+|++|.+++.++++       
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIR--RQGGEALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHH--hCCCcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999998887765432 2222211111  111457889999999988877664       


Q ss_pred             CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhCC------CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNAK------TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                      ++|+|||+|+.....      ..+..+..++.|+.++.++++++...-      ...++|++||...+.  ...      
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--~~~------  151 (248)
T PRK06123         80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARL--GSP------  151 (248)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcC--CCC------
Confidence            689999999865321      111234678999999988887765421      124799999975542  110      


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                   .....|+.+|...|.+++.++.+.   |++++++||+.++++..............   .+. ..+ 
T Consensus       152 -------------~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~---~~~-~p~-  213 (248)
T PRK06123        152 -------------GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGGEPGRVDRV---KAG-IPM-  213 (248)
T ss_pred             -------------CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccCCHHHHHHH---Hhc-CCC-
Confidence                         011359999999999999988775   89999999999999853321111111111   111 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                          ....+++|+++++..++....   .+..|++.+
T Consensus       214 ----~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~g  246 (248)
T PRK06123        214 ----GRGGTAEEVARAILWLLSDEASYTTGTFIDVSG  246 (248)
T ss_pred             ----CCCcCHHHHHHHHHHHhCccccCccCCEEeecC
Confidence                234578999999999987543   234566643

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.2e-19  Score=158.71  Aligned_cols=219  Identities=15%  Similarity=0.161  Sum_probs=153.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|+||.+++++|+++|++|++++|+... .........  ....++.++.+|++|.+.+.++++      
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVE--KEGVKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999999999999987543 222222211  112468899999999988877664      


Q ss_pred             -CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|+|||+|+.....      ..+.....++.|+.++.++++++... ....++|++||...+...             
T Consensus       123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~-------------  189 (290)
T PRK06701        123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN-------------  189 (290)
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC-------------
Confidence             589999999864311      11223467899999999999988653 113589999998877411             


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                               .....|+.+|.+.+.+++.++.++   |++++.++||.++.+...........   ... .....     .
T Consensus       190 ---------~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~~~~~---~~~-~~~~~-----~  251 (290)
T PRK06701        190 ---------ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFDEEKV---SQF-GSNTP-----M  251 (290)
T ss_pred             ---------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccCHHHH---HHH-HhcCC-----c
Confidence                     122379999999999999999875   89999999999988753321111100   000 11111     1


Q ss_pred             CccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      .++.+.+|+++++++++....  ..| .+++.+
T Consensus       252 ~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idg  284 (290)
T PRK06701        252 QRPGQPEELAPAYVFLASPDSSYITGQMLHVNG  284 (290)
T ss_pred             CCCcCHHHHHHHHHHHcCcccCCccCcEEEeCC
Confidence            458899999999999997643  233 455543

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.85  E-value=7.1e-20  Score=156.09  Aligned_cols=205  Identities=16%  Similarity=0.145  Sum_probs=147.4

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |+. .||+++||||+|+||.+++++|+++|++|++++|+++....+......  ...++.++.+|++|.+++.++++   
T Consensus         1 ~~~~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~   78 (241)
T PRK07454          1 MSLNSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS--TGVKAAAYSIDLSNPEAIAPGIAELL   78 (241)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            554 467899999999999999999999999999999987654443322211  12468899999999988777654   


Q ss_pred             ----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                          ++|+|||+|+.....     ..+..+..+..|+.+..++++.+    .+.+ ..++|++||...++  .       
T Consensus        79 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~--~-------  148 (241)
T PRK07454         79 EQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVSSIAARN--A-------  148 (241)
T ss_pred             HHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhCc--C-------
Confidence                589999999864321     11233466788999888877665    3344 57899999987764  1       


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                   ..+...|+.+|...+.+++.++++   .|++++++|||.+-.+......   .        ..  .+
T Consensus       149 -------------~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~---~--------~~--~~  202 (241)
T PRK07454        149 -------------FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTET---V--------QA--DF  202 (241)
T ss_pred             -------------CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccc---c--------cc--cc
Confidence                         113457999999999998887754   3899999999998765421100   0        00  00


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                         ....++..+|+|++++.++..+.
T Consensus       203 ---~~~~~~~~~~va~~~~~l~~~~~  225 (241)
T PRK07454        203 ---DRSAMLSPEQVAQTILHLAQLPP  225 (241)
T ss_pred             ---ccccCCCHHHHHHHHHHHHcCCc
Confidence               01246889999999999998764

>PLN02253 xanthoxin dehydrogenase

Probab=99.85  E-value=9.3e-20  Score=158.90  Aligned_cols=211  Identities=17%  Similarity=0.173  Sum_probs=145.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||++++++|+++|++|++++|+.+...++.....   ...++.++.+|++|.+++.++++       +
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~   94 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT   94 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999999987655443332221   12468999999999988877665       6


Q ss_pred             ccEEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           78 CTGVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      +|++||+||.....       ..+..+..+++|+.++.++++++..    .+ ..++|++||.....  ..         
T Consensus        95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~--~~---------  162 (280)
T PLN02253         95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLK-KGSIVSLCSVASAI--GG---------  162 (280)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CceEEEecChhhcc--cC---------
Confidence            89999999864311       1122356899999999998887653    22 35789998865431  00         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh-----hHHHhhhhcccCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP-----SLITALSPITRNEA  218 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-----~~~~~~~~~~~~~~  218 (338)
                                 .....|+.+|.+.|.+++.++.++   |+++++++||.+..+........     ..............
T Consensus       163 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (280)
T PLN02253        163 -----------LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNA  231 (280)
T ss_pred             -----------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCC
Confidence                       122379999999999999998875   79999999999987642211110     00000000000000


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .+    ....++.+|+++++.+++...
T Consensus       232 ~l----~~~~~~~~dva~~~~~l~s~~  254 (280)
T PLN02253        232 NL----KGVELTVDDVANAVLFLASDE  254 (280)
T ss_pred             CC----cCCCCCHHHHHHHHHhhcCcc
Confidence            00    123578999999999998753

>PRK08264 short chain dehydrogenase; Validated

Probab=99.85  E-value=1.6e-20  Score=159.75  Aligned_cols=164  Identities=19%  Similarity=0.138  Sum_probs=128.0

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---C
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---G   77 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~   77 (338)
                      ....++|+||||+|+||++++++|+++|+ +|++++|+.+....         ...+++++.+|+.|.+++.++++   .
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~   73 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAEAASD   73 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHHhcCC
Confidence            34568999999999999999999999998 99999998654332         11478999999999998888776   5


Q ss_pred             ccEEEEeccc-CCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           78 CTGVFHLATP-MDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        78 ~d~vi~~a~~-~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      +|+|||+++. ...     ...+.....++.|+.+...+++++.    ..+ ..+||++||...+.              
T Consensus        74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~--------------  138 (238)
T PRK08264         74 VTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANG-GGAIVNVLSVLSWV--------------  138 (238)
T ss_pred             CCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcChhhcc--------------
Confidence            8999999986 221     1122334568899999999988865    334 57899999977663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPF  197 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~  197 (338)
                              +..+...|+.+|..+|.+.+.++++.   +++++++||+.+.++.
T Consensus       139 --------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~  183 (238)
T PRK08264        139 --------NFPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM  183 (238)
T ss_pred             --------CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence                    11234589999999999999888764   8999999999887653

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.85  E-value=8.4e-20  Score=158.60  Aligned_cols=198  Identities=15%  Similarity=0.053  Sum_probs=144.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+++|+||||+|.||++++++|+++|++|++++|+++.........      .++.++.+|++|++++.++++    
T Consensus         1 ~~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~   74 (273)
T PRK07825          1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL------GLVVGGPLDVTDPASFAAFLDAVEA   74 (273)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------ccceEEEccCCCHHHHHHHHHHHHH
Confidence            5666789999999999999999999999999999999776544432211      247889999999988766553    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|++||+||.....     ..+.....++.|+.++..+.+++    .+.+ ..++|++||...+.           
T Consensus        75 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-----------  142 (273)
T PRK07825         75 DLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVASLAGKI-----------  142 (273)
T ss_pred             HcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCccccC-----------
Confidence               589999999864421     11223457889998888876655    3445 57999999976553           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +......|+.+|...+.+.+.++.+   .|+++++++|+.+..+....               .    .
T Consensus       143 -----------~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~~---------------~----~  192 (273)
T PRK07825        143 -----------PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIAG---------------T----G  192 (273)
T ss_pred             -----------CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhcc---------------c----c
Confidence                       1123457999999988877776655   38999999999875433111               0    0


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ......++..+|+|+.++.++.++.
T Consensus       193 ~~~~~~~~~~~~va~~~~~~l~~~~  217 (273)
T PRK07825        193 GAKGFKNVEPEDVAAAIVGTVAKPR  217 (273)
T ss_pred             cccCCCCCCHHHHHHHHHHHHhCCC
Confidence            0011357899999999999998754

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-19  Score=155.58  Aligned_cols=205  Identities=16%  Similarity=0.141  Sum_probs=146.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++|+||||+|+||.+++++|+++|++|++++|+...........     ..++..+.+|+++++++.++++       
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   88 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLL-----GGNAKGLVCDVSDSQSVEAAVAAVISAFG   88 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhh-----CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999999765433222221     1356789999999988877654       


Q ss_pred             CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||......     .+..+..++.|+.+..++++++..    .+ ..+||++||.....  ..          
T Consensus        89 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~----------  155 (255)
T PRK06841         89 RIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAG-GGKIVNLASQAGVV--AL----------  155 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC-CceEEEEcchhhcc--CC----------
Confidence            5799999998654211     122345788999999999888754    34 57899999975432  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                                .....|+.+|.+.+.+++.++.++   |++++.++||.+..+..............    ......    
T Consensus       156 ----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~----~~~~~~----  217 (255)
T PRK06841        156 ----------ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWAGEKGERA----KKLIPA----  217 (255)
T ss_pred             ----------CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccchhHHHHH----HhcCCC----
Confidence                      123479999999999999888774   89999999999876643211111000000    111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       .++.+.+|++++++.++...
T Consensus       218 -~~~~~~~~va~~~~~l~~~~  237 (255)
T PRK06841        218 -GRFAYPEEIAAAALFLASDA  237 (255)
T ss_pred             -CCCcCHHHHHHHHHHHcCcc
Confidence             45889999999999999764

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.84  E-value=8.4e-20  Score=162.30  Aligned_cols=195  Identities=19%  Similarity=0.147  Sum_probs=133.2

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |+. .+++|+||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++   
T Consensus         1 m~~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~   78 (322)
T PRK07453          1 MSQDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI--PPDSYTIIHIDLGDLDSVRRFVDDFR   78 (322)
T ss_pred             CCCCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc--cCCceEEEEecCCCHHHHHHHHHHHH
Confidence            443 578999999999999999999999999999999986654443322211  12468899999999988877664   


Q ss_pred             ----CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHh----CCC-ccEEEEecCceeeeccCCCCCC
Q 040253           77 ----GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKN----AKT-VRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                          ++|+|||+||....      ...+..+..+++|+.++.++++++..    .+. ..|+|++||...+........+
T Consensus        79 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~  158 (322)
T PRK07453         79 ALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIP  158 (322)
T ss_pred             HhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccC
Confidence                48999999985431      11223456789999999988877653    221 2599999998765311000100


Q ss_pred             cCCC-CCCchh-----h-------hhhccCCCchHHHHHHHHHHHHHHHHHHc----CccEEEEcCCceeCCC
Q 040253          142 YDET-SWSDLD-----F-------VRSVKMTGWMYFVSKTLAEQAAWKFAEEN----NIDFISIIPSLVVGPF  197 (338)
Q Consensus       142 ~~e~-~~~~~~-----~-------~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~  197 (338)
                      .++. +..+..     +       ...+..|...|+.||++.+.+.+.+++++    |+++++++||.|++..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~  231 (322)
T PRK07453        159 IPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP  231 (322)
T ss_pred             CCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence            1100 000000     0       00123466789999999988888888775    7999999999998754

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.84  E-value=6.6e-20  Score=157.02  Aligned_cols=208  Identities=19%  Similarity=0.211  Sum_probs=143.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~   76 (338)
                      ++++|+||||+|+||++++++|+++|++|++++|+.+.........     ..++.++.+|++|.+++..++       .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL-----GESALVIRADAGDVAAQKALAQALAEAFG   79 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh-----CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3589999999999999999999999999999998754433322211     135788999999987765544       3


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCce-eeeccCCCCCCcCCCCCCc
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAG-TLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~-v~~~~~~~~~~~~e~~~~~  149 (338)
                      ++|+|||+|+.....     ..+..+..++.|+.++.++++++... ....++|++||.. .++  .             
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~--~-------------  144 (249)
T PRK06500         80 RLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG--M-------------  144 (249)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC--C-------------
Confidence            689999999864321     11234467899999999999998742 1134677777743 332  0             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC-CC-hhHHHhhhhcccCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS-MP-PSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              .....|+.+|.+.|.+++.++.+.   |++++++||+.++++..... .. ............. ..+    
T Consensus       145 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-~~~----  211 (249)
T PRK06500        145 --------PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQAL-VPL----  211 (249)
T ss_pred             --------CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhc-CCC----
Confidence                    134589999999999998887764   89999999999998742210 00 0011111111111 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ..+...+|+++++.+++...
T Consensus       212 -~~~~~~~~va~~~~~l~~~~  231 (249)
T PRK06500        212 -GRFGTPEEIAKAVLYLASDE  231 (249)
T ss_pred             -CCCcCHHHHHHHHHHHcCcc
Confidence             23668999999999988753

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.84  E-value=8e-20  Score=157.26  Aligned_cols=195  Identities=19%  Similarity=0.166  Sum_probs=142.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+|+||||+|+||.+++++|+++|++|++++|+.+.........  +.. .++.++.+|++|.+++.++++       .
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~--~~~-~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARL--PKA-ARVSVYAADVRDADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--ccC-CeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            579999999999999999999999999999999865544332221  111 268899999999988877654       3


Q ss_pred             ccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHH----HHHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           78 CTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMR----ACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        78 ~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      +|++||+||.....      ..+..+..+++|+.++..+++    .+++.+ ..++|++||...+.  ..          
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~-~~~iv~isS~~~~~--~~----------  145 (257)
T PRK07024         79 PDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR-RGTLVGIASVAGVR--GL----------  145 (257)
T ss_pred             CCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC-CCEEEEEechhhcC--CC----------
Confidence            79999999864321      112345678899999988776    444555 57899999976542  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                                +....|+.+|.+.+.+++.++.+   +|+++++++||.+.++.....             ....      
T Consensus       146 ----------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~-------------~~~~------  196 (257)
T PRK07024        146 ----------PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHN-------------PYPM------  196 (257)
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcC-------------CCCC------
Confidence                      12347999999999999888744   489999999999987642110             0000      


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ..++..+++++.+..++.+.
T Consensus       197 -~~~~~~~~~a~~~~~~l~~~  216 (257)
T PRK07024        197 -PFLMDADRFAARAARAIARG  216 (257)
T ss_pred             -CCccCHHHHHHHHHHHHhCC
Confidence             11467999999999999864

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.9e-19  Score=155.05  Aligned_cols=217  Identities=16%  Similarity=0.189  Sum_probs=148.3

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .++|++|||||+|+||.+++++|+++|++|+++.+.. +...........  ...++.++.+|++|.+++.++++     
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRA--LGRRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            3468999999999999999999999999998887743 222222211111  12468899999999988877664     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                        ++|+|||+||.....     ..+..+..++.|+.++..+++++....   ...++|++||...+.             
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~-------------  151 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN-------------  151 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC-------------
Confidence              489999999864321     122345678999999999988776532   135788888764442             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               +.+....|+.+|...|.+.+.+++++  ++++++++||.+......  ....+....   ...  ..    
T Consensus       152 ---------~~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~--~~~~~~~~~---~~~--~~----  211 (258)
T PRK09134        152 ---------LNPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ--SPEDFARQH---AAT--PL----  211 (258)
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc--ChHHHHHHH---hcC--CC----
Confidence                     11123479999999999999998875  489999999988754321  111111111   011  11    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                       ....+++|+|++++.+++++...| .+++.+
T Consensus       212 -~~~~~~~d~a~~~~~~~~~~~~~g~~~~i~g  242 (258)
T PRK09134        212 -GRGSTPEEIAAAVRYLLDAPSVTGQMIAVDG  242 (258)
T ss_pred             -CCCcCHHHHHHHHHHHhcCCCcCCCEEEECC
Confidence             235779999999999998766555 455543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=1.6e-19  Score=155.29  Aligned_cols=217  Identities=16%  Similarity=0.151  Sum_probs=144.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|.||.+++++|.++|++|+++.|+.+..  .+.+..     .++.++.+|++|.+++.++++       
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~--~~~l~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE--AKELRE-----KGVFTIKCDVGNRDQVKKSKEVVEKEFG   78 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH--HHHHHh-----CCCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            358999999999999999999999999998887754322  222211     247889999999988877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHH----HHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIM----RACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~----~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++..+.    ..+++.+ ..++|++||...++  ..          
T Consensus        79 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS~~~~~--~~----------  145 (255)
T PRK06463         79 RVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIASNAGIG--TA----------  145 (255)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHhCC--CC----------
Confidence            689999999864311     11233467888999965554    4444444 57999999987663  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-hhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  223 (338)
                               ......|+.+|.+.+.+++.++.+.   |+++++++||.+-.+....... ............. ..+   
T Consensus       146 ---------~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~---  212 (255)
T PRK06463        146 ---------AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNK-TVL---  212 (255)
T ss_pred             ---------CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhC-CCc---
Confidence                     1123479999999999999998764   8999999999885543211100 0000000000011 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                        ..+...+|++++++.++.....  .| .+.+.+
T Consensus       213 --~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dg  245 (255)
T PRK06463        213 --KTTGKPEDIANIVLFLASDDARYITGQVIVADG  245 (255)
T ss_pred             --CCCcCHHHHHHHHHHHcChhhcCCCCCEEEECC
Confidence              3467899999999999875432  34 445543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.84  E-value=2e-19  Score=155.03  Aligned_cols=212  Identities=18%  Similarity=0.172  Sum_probs=146.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .++++|||||+|+||.+++++|+++|++|++++|+.+..+........  ...++.++.+|++|.+++.++++       
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA--LGIDALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            358999999999999999999999999999999976554433322111  12467889999999988866553       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+|+....     ...+...+.++.|+.++.++++++...    +..++||++||...+.....          
T Consensus        89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~----------  158 (259)
T PRK08213         89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP----------  158 (259)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc----------
Confidence            58999999985321     111223456789999999999977543    12579999999766541110          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              ...+...|+.+|...|.+++.+++++   |+++++++|+.+-.+......... ....  ..+.+  .    
T Consensus       159 --------~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~~~~~~-~~~~--~~~~~--~----  221 (259)
T PRK08213        159 --------EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRGTLERL-GEDL--LAHTP--L----  221 (259)
T ss_pred             --------cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhhhhHHH-HHHH--HhcCC--C----
Confidence                    00134589999999999999998864   799999999888665422211111 1111  11111  1    


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ..+...+|++.++.+++...
T Consensus       222 -~~~~~~~~va~~~~~l~~~~  241 (259)
T PRK08213        222 -GRLGDDEDLKGAALLLASDA  241 (259)
T ss_pred             -CCCcCHHHHHHHHHHHhCcc
Confidence             23567899999999888653

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.5e-19  Score=153.72  Aligned_cols=198  Identities=20%  Similarity=0.183  Sum_probs=143.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++++|+||||+|+||++++++|+++|++|++++|++.....+......  . .+++++.+|+.|.+++.++++       
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~--~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN--K-GNVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc--c-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            458999999999999999999999999999999987654443322211  1 468899999999988777664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      ++|+|||+++.....     ..+..++.++.|+.+...+++++...   + .+++|++||...+.               
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~---------------  145 (237)
T PRK07326         82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRG-GGYIINISSLAGTN---------------  145 (237)
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHC-CeEEEEECChhhcc---------------
Confidence            689999999864321     11223467888999999888877542   3 46899999975542               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +..+...|+.+|...+.+.+.++.+   .|++++++||+.+.++......            ....       
T Consensus       146 -------~~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~------------~~~~-------  199 (237)
T PRK07326        146 -------FFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTP------------SEKD-------  199 (237)
T ss_pred             -------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccccc------------chhh-------
Confidence                   1113447999999999888887654   4899999999988765421100            0000       


Q ss_pred             CccccHHHHHHHHHHhhcCCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ...+..+|+++.+..++..+.
T Consensus       200 ~~~~~~~d~a~~~~~~l~~~~  220 (237)
T PRK07326        200 AWKIQPEDIAQLVLDLLKMPP  220 (237)
T ss_pred             hccCCHHHHHHHHHHHHhCCc
Confidence            114789999999999998764

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.84  E-value=1.7e-19  Score=154.25  Aligned_cols=211  Identities=19%  Similarity=0.176  Sum_probs=148.2

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |..++++|+||||+|+||.+++++|+++|++|+++ .|+......+......  ...++.++.+|++|++++.++++   
T Consensus         1 ~~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~   78 (247)
T PRK05565          1 MKLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE--EGGDAIAVKADVSSEEDVENLVEQIV   78 (247)
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            55667899999999999999999999999999998 8876554443322111  12468899999999998877664   


Q ss_pred             ----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                          ++|+|||+++.....     ..+..+..++.|+.+..++++++..    .+ .+++|++||...+...        
T Consensus        79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~~~--------  149 (247)
T PRK05565         79 EKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRK-SGVIVNISSIWGLIGA--------  149 (247)
T ss_pred             HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCHhhccCC--------
Confidence                699999999865321     1223356788999998888777653    33 5689999997665311        


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                    .....|+.+|...+.+++.++++.   |++++++|||.+..+............ ..   .     
T Consensus       150 --------------~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~~~~~~~-~~---~-----  206 (247)
T PRK05565        150 --------------SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFSEEDKEG-LA---E-----  206 (247)
T ss_pred             --------------CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccChHHHHH-HH---h-----
Confidence                          123479999999988888877664   899999999988765432211111110 00   0     


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                       ......+...+|+++++..++....
T Consensus       207 -~~~~~~~~~~~~va~~~~~l~~~~~  231 (247)
T PRK05565        207 -EIPLGRLGKPEEIAKVVLFLASDDA  231 (247)
T ss_pred             -cCCCCCCCCHHHHHHHHHHHcCCcc
Confidence             0111347789999999999987643

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.84  E-value=3.4e-19  Score=152.91  Aligned_cols=220  Identities=16%  Similarity=0.145  Sum_probs=149.5

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ...++|+||||+|+||.+++++|++.|++|++++|+......+.....  .....+.++.+|+.|.+++.++++      
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIV--AAGGKAEALACHIGEMEQIDALFAHIRERH   83 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            346899999999999999999999999999999997655443332211  111457889999999988776553      


Q ss_pred             -CccEEEEecccCC------CCCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMD------FESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       ++|++||+|+...      ....+..+..++.|+.+...+++++    +..+ ..+++++||...+.            
T Consensus        84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~------------  150 (252)
T PRK07035         84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQG-GGSIVNVASVNGVS------------  150 (252)
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CcEEEEECchhhcC------------
Confidence             5899999998532      1111223467889999988877666    3334 57899999865442            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +..+...|+.+|.+.+.+++.++.++   |++++.+.||.+..+.........  ......... ...  
T Consensus       151 ----------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~--~~~~~~~~~-~~~--  215 (252)
T PRK07035        151 ----------PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKND--AILKQALAH-IPL--  215 (252)
T ss_pred             ----------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCH--HHHHHHHcc-CCC--
Confidence                      11244589999999999999998775   899999999988654322111110  000000011 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                         ..+...+|++++++.++.....  .| .+++.+
T Consensus       216 ---~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dg  248 (252)
T PRK07035        216 ---RRHAEPSEMAGAVLYLASDASSYTTGECLNVDG  248 (252)
T ss_pred             ---CCcCCHHHHHHHHHHHhCccccCccCCEEEeCC
Confidence               3477899999999999875432  34 345543

>PRK07985 oxidoreductase; Provisional

Probab=99.84  E-value=2.5e-19  Score=157.03  Aligned_cols=209  Identities=13%  Similarity=0.113  Sum_probs=146.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC--cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .++++||||+|+||.+++++|+++|++|++..|+..  ..+.+......  ...++.++.+|++|.+++.++++      
T Consensus        49 ~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         49 DRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEE--CGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHH--cCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999998876533  23333322211  11457889999999987776553      


Q ss_pred             -CccEEEEecccCC------CCCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMD------FESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|++||+|+...      ....+..+..+++|+.++..+++++... ....++|++||...+.  ..           
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~--~~-----------  193 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ--PS-----------  193 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc--CC-----------
Confidence             5899999998532      1112334577899999999999888653 1135899999987764  11           


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCC-CChhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSS-MPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               .....|+.+|.+.+.+++.++.+   +|+++++++||.+.++..... .........    ......    
T Consensus       194 ---------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~----~~~~~~----  256 (294)
T PRK07985        194 ---------PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQF----GQQTPM----  256 (294)
T ss_pred             ---------CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHH----hccCCC----
Confidence                     12347999999999999998877   489999999999998853211 111111000    111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                       .++...+|+|+++++++....
T Consensus       257 -~r~~~pedva~~~~fL~s~~~  277 (294)
T PRK07985        257 -KRAGQPAELAPVYVYLASQES  277 (294)
T ss_pred             -CCCCCHHHHHHHHHhhhChhc
Confidence             347789999999999987543

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.84  E-value=2.3e-19  Score=160.44  Aligned_cols=264  Identities=19%  Similarity=0.189  Sum_probs=175.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHh-------------cCCCCCCcEEEEecccCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLL-------------ELPKASTHLTLWKADLAEE   68 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~-------------~~~~~~~~~~~~~~Dl~d~   68 (338)
                      .|+|||||||||+|.-+++.|+..-   .+++.+.|.....+..+++.             ..+....++..+.||+.++
T Consensus        12 ~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~~~   91 (467)
T KOG1221|consen   12 NKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDISEP   91 (467)
T ss_pred             CCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccccCc
Confidence            6899999999999999999998752   48888888554432222222             1123346899999999876


Q ss_pred             C------CchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeecc-CCCCCC
Q 040253           69 G------NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVE-EHRKPV  141 (338)
Q Consensus        69 ~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~-~~~~~~  141 (338)
                      +      ++..+.+.+|+|||+||.+.+.  ++.+....+|..|+.++++.|++....+.++|+||+.+--.. .-.+.+
T Consensus        92 ~LGis~~D~~~l~~eV~ivih~AAtvrFd--e~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~~  169 (467)
T KOG1221|consen   92 DLGISESDLRTLADEVNIVIHSAATVRFD--EPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEKP  169 (467)
T ss_pred             ccCCChHHHHHHHhcCCEEEEeeeeeccc--hhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccccccccc
Confidence            4      3444567899999999987764  445577899999999999999998778999999998775211 111223


Q ss_pred             cCCCC------------CCchhh---hhhc--cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh
Q 040253          142 YDETS------------WSDLDF---VRSV--KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP  204 (338)
Q Consensus       142 ~~e~~------------~~~~~~---~~~~--~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~  204 (338)
                      +.+..            +...+.   ..+.  ....+.|.-+|..+|.++.+.+  .+++++|+||+.|......+.-.+
T Consensus       170 y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPsiI~st~~EP~pGW  247 (467)
T KOG1221|consen  170 YPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPSIITSTYKEPFPGW  247 (467)
T ss_pred             cCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCCceeccccCCCCCc
Confidence            32222            111111   1111  1235679999999999998754  479999999999997654432111


Q ss_pred             h--HH----HhhhhcccCCCCC-CCC-CCCccccHHHHHHHHHHhhc-----CC-CCCCceEEec---CCCCHHHHHHHH
Q 040253          205 S--LI----TALSPITRNEAHY-PII-KQGQFVHLDDLCSAHIFLFE-----HP-NAKGRYICSS---HPATILELAKFL  267 (338)
Q Consensus       205 ~--~~----~~~~~~~~~~~~~-~~~-~~~~~i~v~D~a~~~~~~l~-----~~-~~~~~~~~~~---~~~t~~e~~~~i  267 (338)
                      .  +.    .+.....|.-..+ ... ...++|.+|.++.+++.+.-     .. ....+||+++   .++++.++.+..
T Consensus       248 idn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~~~~~e~~  327 (467)
T KOG1221|consen  248 IDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTWGDFIELA  327 (467)
T ss_pred             cccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccHHHHHHHH
Confidence            0  00    0011111111111 111 22679999999999996652     11 1133898843   679999999999


Q ss_pred             HHhCC
Q 040253          268 REKYP  272 (338)
Q Consensus       268 ~~~~~  272 (338)
                      .+.+.
T Consensus       328 ~~~~~  332 (467)
T KOG1221|consen  328 LRYFE  332 (467)
T ss_pred             HHhcc
Confidence            98764

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.84  E-value=2.8e-19  Score=152.78  Aligned_cols=212  Identities=18%  Similarity=0.155  Sum_probs=146.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |..+.++|+||||+|+||++++++|.++|++|+++.|+... .... +.+..   ...++.++.+|++|.+++.++++  
T Consensus         1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~   77 (245)
T PRK12937          1 MTLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEA---AGGRAIAVQADVADAAAVTRLFDAA   77 (245)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHH
Confidence            66677999999999999999999999999999888775432 2222 11111   12468899999999988877765  


Q ss_pred             -----CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -----GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                           ++|+|||+|+....     ...+..+..++.|+.++.++++++...- ...++|++||...+.            
T Consensus        78 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~------------  145 (245)
T PRK12937         78 ETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL------------  145 (245)
T ss_pred             HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC------------
Confidence                 68999999986431     1112234567899999999888776532 135899999865542            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +.++...|+.+|...+.+++.++.++   ++++++++||.+-.+.............   .... ..+  
T Consensus       146 ----------~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~---~~~~-~~~--  209 (245)
T PRK12937        146 ----------PLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNGKSAEQIDQ---LAGL-APL--  209 (245)
T ss_pred             ----------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhcccCCHHHHHH---HHhc-CCC--
Confidence                      11234589999999999999887764   7999999999876653211111111100   0011 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                         ..+.+.+|+++++..++....
T Consensus       210 ---~~~~~~~d~a~~~~~l~~~~~  230 (245)
T PRK12937        210 ---ERLGTPEEIAAAVAFLAGPDG  230 (245)
T ss_pred             ---CCCCCHHHHHHHHHHHcCccc
Confidence               246688999999999996543

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.84  E-value=1.3e-19  Score=155.91  Aligned_cols=166  Identities=19%  Similarity=0.161  Sum_probs=123.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-CccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-GCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~   83 (338)
                      +++||||||+|+||++++++|+++|++|++++|++.....+.......  ..++.++.+|++|++++.+++. ++|+|||
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~id~vi~   79 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAEWDVDVLLN   79 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence            579999999999999999999999999999999866554443322211  1468899999999999888876 8999999


Q ss_pred             ecccCCCC-----CCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhh
Q 040253           84 LATPMDFE-----SKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVR  154 (338)
Q Consensus        84 ~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~  154 (338)
                      +|+.....     ..+..+..+++|+.+...+.+.    +.+.+ .+++|++||...+.  ..                 
T Consensus        80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~SS~~~~~--~~-----------------  139 (257)
T PRK09291         80 NAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARG-KGKVVFTSSMAGLI--TG-----------------  139 (257)
T ss_pred             CCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcChhhcc--CC-----------------
Confidence            99854311     1112335677888877666544    44555 57999999975432  10                 


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeC
Q 040253          155 SVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVG  195 (338)
Q Consensus       155 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G  195 (338)
                         .....|+.+|.+.|.+++.++.+   .|++++++|||.+..
T Consensus       140 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t  180 (257)
T PRK09291        140 ---PFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLT  180 (257)
T ss_pred             ---CCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccc
Confidence               12347999999999988877665   499999999988753

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.83  E-value=1.9e-19  Score=154.01  Aligned_cols=209  Identities=17%  Similarity=0.158  Sum_probs=139.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      |++++||||+|+||++++++|+++|++|+++ .|+++...........  ...++..+.+|++|.+++.++++       
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~   78 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQ--AGGKAFVLQADISDENQVVAMFTAIDQHDE   78 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh--CCCeEEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999875 4554433322221111  12457889999999998877664       


Q ss_pred             CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhC------CCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNA------KTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                      ++|+|||+++.....      ..+..+..++.|+.++..+++++...      +...+||++||...+.  ..       
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~--~~-------  149 (247)
T PRK09730         79 PLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRL--GA-------  149 (247)
T ss_pred             CCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcc--CC-------
Confidence            578999999864211      11122367889999988777655332      1135799999976553  11       


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  +.....|+.+|...+.+++.++.++   +++++++||+.++++..............  ....  .+ 
T Consensus       150 ------------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~~~~~~~~--~~~~--~~-  212 (247)
T PRK09730        150 ------------PGEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRV--KSNI--PM-  212 (247)
T ss_pred             ------------CCcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCCHHHHHHH--HhcC--CC-
Confidence                        0012369999999999888877653   89999999999999864322111111111  0111  11 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                          ....+.+|+++++..++...
T Consensus       213 ----~~~~~~~dva~~~~~~~~~~  232 (247)
T PRK09730        213 ----QRGGQPEEVAQAIVWLLSDK  232 (247)
T ss_pred             ----CCCcCHHHHHHHHHhhcChh
Confidence                12347899999999988754

>PRK06196 oxidoreductase; Provisional

Probab=99.83  E-value=3.6e-19  Score=157.71  Aligned_cols=220  Identities=16%  Similarity=0.106  Sum_probs=143.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++|+||||+|+||.+++++|+++|++|++++|+.+.........      .++.++.+|++|.+++.++++       +
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~   99 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESVRAFAERFLDSGRR   99 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence            579999999999999999999999999999999866544332211      247889999999988877653       6


Q ss_pred             ccEEEEecccCCC---CCCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           78 CTGVFHLATPMDF---ESKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        78 ~d~vi~~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      +|+|||+||....   ...+..+..+++|+.+...+.+.    +++.+ ..++|++||.......    ...++..+   
T Consensus       100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~~~~~~~----~~~~~~~~---  171 (315)
T PRK06196        100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSSAGHRRSP----IRWDDPHF---  171 (315)
T ss_pred             CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECCHHhccCC----CCccccCc---
Confidence            8999999986431   11223456788999997666554    44444 4799999997543210    11111000   


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                         ..+..+...|+.+|.+.+.+.+.+++++   |+++++++||.+.++............ ..........+  .  ..
T Consensus       172 ---~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~-~~~~~~~~~~~--~--~~  243 (315)
T PRK06196        172 ---TRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVA-LGWVDEHGNPI--D--PG  243 (315)
T ss_pred             ---cCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhh-hhhhhhhhhhh--h--hh
Confidence               0012245689999999999998887653   899999999999987532211000000 00000000000  0  12


Q ss_pred             cccHHHHHHHHHHhhcCCC
Q 040253          228 FVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~  246 (338)
                      +...+|.|..+++++..+.
T Consensus       244 ~~~~~~~a~~~~~l~~~~~  262 (315)
T PRK06196        244 FKTPAQGAATQVWAATSPQ  262 (315)
T ss_pred             cCCHhHHHHHHHHHhcCCc
Confidence            5678999999999986543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.83  E-value=4.6e-19  Score=152.46  Aligned_cols=215  Identities=14%  Similarity=0.133  Sum_probs=150.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+....+......  ...++.++.+|++|.+++.++++       
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA--AGGAAEALAFDIADEEAVAAAFARIDAEHG   87 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999999999999986544433221111  12468899999999988877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+++.....     ..+..++.++.|+.++..+.+++.    ..+ ..++|++||...+.  ..          
T Consensus        88 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~--~~----------  154 (256)
T PRK06124         88 RLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG-YGRIIAITSIAGQV--AR----------  154 (256)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEeechhcc--CC----------
Confidence            579999999864321     112334578899999988886654    344 57899999975542  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                .....|+.+|.+.+.+++.++.+.   +++++.++|+.+.++...... .........   .. ...   
T Consensus       155 ----------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~---~~-~~~---  217 (256)
T PRK06124        155 ----------AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLA---QR-TPL---  217 (256)
T ss_pred             ----------CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHH---hc-CCC---
Confidence                      123489999999999988887764   799999999999887532211 111111111   11 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC--CCceE
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA--KGRYI  252 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~--~~~~~  252 (338)
                        ..+++.+|++++++.++.....  .|.++
T Consensus       218 --~~~~~~~~~a~~~~~l~~~~~~~~~G~~i  246 (256)
T PRK06124        218 --GRWGRPEEIAGAAVFLASPAASYVNGHVL  246 (256)
T ss_pred             --CCCCCHHHHHHHHHHHcCcccCCcCCCEE
Confidence              3589999999999999986532  35543

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.83  E-value=5.2e-19  Score=151.10  Aligned_cols=216  Identities=19%  Similarity=0.210  Sum_probs=147.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHh-cCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLL-ELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +++++||||+|+||++++++|.++|++|++++|+...  ....+. .......++.++.+|++|.+++.++++       
T Consensus         2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   79 (245)
T PRK12824          2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGND--CAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG   79 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999999999998541  111111 111112468999999999988777654       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+++....     ...+..+..++.|+.+..++.++    ++..+ ..+||++||...+.  .           
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss~~~~~--~-----------  145 (245)
T PRK12824         80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG-YGRIINISSVNGLK--G-----------  145 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CeEEEEECChhhcc--C-----------
Confidence            58999999986431     11223346778999998887554    45555 67999999976653  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               ......|+.+|.+.+.+++.++.+.   ++++++++|+.+.++........ .....   ... ...    
T Consensus       146 ---------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~-~~~~~---~~~-~~~----  207 (245)
T PRK12824        146 ---------QFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMGPE-VLQSI---VNQ-IPM----  207 (245)
T ss_pred             ---------CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcCHH-HHHHH---Hhc-CCC----
Confidence                     1123479999999998888887643   89999999999987653221111 11111   111 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                       ..+...+|+++++..++.....   +..+++.+
T Consensus       208 -~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~  240 (245)
T PRK12824        208 -KRLGTPEEIAAAVAFLVSEAAGFITGETISING  240 (245)
T ss_pred             -CCCCCHHHHHHHHHHHcCccccCccCcEEEECC
Confidence             3466889999999988865322   44566643

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.83  E-value=3.3e-19  Score=153.17  Aligned_cols=208  Identities=14%  Similarity=0.103  Sum_probs=147.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .++++|||||+|.||.+++++|++.|++|++++|+.+...........  ...++..+.+|++|.+++.++++       
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQ--EGIKAHAAPFNVTHKQEVEAAIEHIEKDIG   85 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999999999999986654443222111  11467888999999988877653       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+|+....     ...+..+..++.|+.++..+++++..    .+ ..++|++||.....              
T Consensus        86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--------------  150 (254)
T PRK08085         86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQ-AGKIINICSMQSEL--------------  150 (254)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEccchhcc--------------
Confidence            58999999986431     11233446789999998888877654    33 46899999965432              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-hhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  223 (338)
                              +..+...|+.+|.+.+.+++.++.++   |+++++++||.+..+....... .......   .. ....   
T Consensus       151 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~---~~-~~p~---  215 (254)
T PRK08085        151 --------GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWL---CK-RTPA---  215 (254)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHH---Hh-cCCC---
Confidence                    01134579999999999999998775   8999999999998775322111 1111111   01 1111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ..+...+|+++++..++...
T Consensus       216 --~~~~~~~~va~~~~~l~~~~  235 (254)
T PRK08085        216 --ARWGDPQELIGAAVFLSSKA  235 (254)
T ss_pred             --CCCcCHHHHHHHHHHHhCcc
Confidence              45788999999999998753

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.83  E-value=4.6e-19  Score=152.11  Aligned_cols=205  Identities=14%  Similarity=0.106  Sum_probs=145.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |....|+++||||+|+||++++++|+++|++|++++|+.+..     .     ...++.++.+|+.|.+++.++++    
T Consensus         2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~-----~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~   71 (252)
T PRK07856          2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET-----V-----DGRPAEFHAADVRDPDQVAALVDAIVE   71 (252)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh-----h-----cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            344568999999999999999999999999999999976431     0     01468899999999988877664    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|+|||+||.....     ..+..+..++.|+.++..+++++..    .....++|++||...+.           
T Consensus        72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~-----------  140 (252)
T PRK07856         72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR-----------  140 (252)
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC-----------
Confidence               479999999854321     1122346788999999999987753    11146899999976553           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                 +......|+.+|...+.+++.++.++  .++++.++||.+..+......... . ..... ......  
T Consensus       141 -----------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~-~-~~~~~-~~~~~~--  204 (252)
T PRK07856        141 -----------PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDA-E-GIAAV-AATVPL--  204 (252)
T ss_pred             -----------CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCH-H-HHHHH-hhcCCC--
Confidence                       11134589999999999999998875  388999999988766422111100 0 00000 011111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         ..+...+|+++++++++...
T Consensus       205 ---~~~~~p~~va~~~~~L~~~~  224 (252)
T PRK07856        205 ---GRLATPADIAWACLFLASDL  224 (252)
T ss_pred             ---CCCcCHHHHHHHHHHHcCcc
Confidence               34678999999999998753

>PRK08643 acetoin reductase; Validated

Probab=99.83  E-value=5.7e-19  Score=151.92  Aligned_cols=212  Identities=16%  Similarity=0.158  Sum_probs=143.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|++.+.++++       +
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--DGGKAIAVKADVSDRDQVFAAVRQVVDTFGD   79 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            68999999999999999999999999999999987654444332211  12467889999999988777654       5


Q ss_pred             ccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+|+......     .+..+..++.|+.++..+++++..    .+...++|++||...+.  ..           
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--~~-----------  146 (256)
T PRK08643         80 LNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV--GN-----------  146 (256)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc--CC-----------
Confidence            899999998643211     122345788999988777666543    22135899999976543  10           


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCC------
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAH------  219 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~------  219 (338)
                               .....|+.+|...+.+++.++.+.   |++++.++||.+.++.....    ... .....+.+..      
T Consensus       147 ---------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~----~~~-~~~~~~~~~~~~~~~~  212 (256)
T PRK08643        147 ---------PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDI----AHQ-VGENAGKPDEWGMEQF  212 (256)
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHH----Hhh-hccccCCCchHHHHHH
Confidence                     123479999999999998888764   89999999999977642110    000 0000000000      


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...-....+...+|+++++.+++...
T Consensus       213 ~~~~~~~~~~~~~~va~~~~~L~~~~  238 (256)
T PRK08643        213 AKDITLGRLSEPEDVANCVSFLAGPD  238 (256)
T ss_pred             hccCCCCCCcCHHHHHHHHHHHhCcc
Confidence            00000134778999999999998654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.83  E-value=8.6e-19  Score=150.70  Aligned_cols=218  Identities=14%  Similarity=0.134  Sum_probs=150.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++|+||||+|+||.+++++|.++|++|++++|+.+............  ..++.++.+|++|.+++.++++       
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   87 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITSEQELSALADFALSKLG   87 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999998765544432222111  1367889999999988776543       


Q ss_pred             CccEEEEecccCCCCC----CCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 GCTGVFHLATPMDFES----KDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      ++|++||+|+......    .+..+..++.|+.++.++++++..    .+ ..++|++||.+...               
T Consensus        88 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~---------------  151 (255)
T PRK06113         88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN---------------  151 (255)
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC-CcEEEEEecccccC---------------
Confidence            5899999998643211    122334588999999999988753    33 45899999975432               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +..+...|+.+|.+.+.+++.++.+.   +++++++.||.+..+..............   ... ..+     
T Consensus       152 -------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~---~~~-~~~-----  215 (255)
T PRK06113        152 -------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKM---LQH-TPI-----  215 (255)
T ss_pred             -------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecccccccccccccCHHHHHHH---Hhc-CCC-----
Confidence                   11234579999999999999988764   79999999998876542221111111100   111 111     


Q ss_pred             CccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          226 GQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                      ..+...+|++++++.++.....  .| .+++.+
T Consensus       216 ~~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~g  248 (255)
T PRK06113        216 RRLGQPQDIANAALFLCSPAASWVSGQILTVSG  248 (255)
T ss_pred             CCCcCHHHHHHHHHHHcCccccCccCCEEEECC
Confidence            3477999999999999975332  33 456644

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.83  E-value=5.5e-19  Score=151.83  Aligned_cols=210  Identities=15%  Similarity=0.091  Sum_probs=145.7

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ..+++++||||+|.||.+++++|+++|++|++++|++++.+.+......  ...++.++.+|++|++++.++++      
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA--EGGEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            3468999999999999999999999999999999987655444322111  12468889999999988777664      


Q ss_pred             -CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       ++|++||+||....      ...+..+..+++|+.+...+.++    +++.+ ..++|++||...+.  .         
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS~~~~~--~---------  149 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTSTFVGHT--A---------  149 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEechHhhc--c---------
Confidence             68999999986421      11123456789999877776554    34444 56899999976542  0         


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYP  221 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~  221 (338)
                                ...+...|+.+|.+.+.+++.++.++   |+++++++||.+-.+...... .........   . .... 
T Consensus       150 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~---~-~~~~-  214 (254)
T PRK07478        150 ----------GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVA---G-LHAL-  214 (254)
T ss_pred             ----------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHH---h-cCCC-
Confidence                      01134589999999999999988875   799999999998765321100 001111000   0 0011 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                          ..+...+|+++++++++...
T Consensus       215 ----~~~~~~~~va~~~~~l~s~~  234 (254)
T PRK07478        215 ----KRMAQPEEIAQAALFLASDA  234 (254)
T ss_pred             ----CCCcCHHHHHHHHHHHcCch
Confidence                34678999999999998754

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.83  E-value=5e-19  Score=151.17  Aligned_cols=214  Identities=16%  Similarity=0.144  Sum_probs=145.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~   76 (338)
                      .+++++||||+|+||++++++|+++|+.|.+..|+.+....+....     ..+++++.+|++|.+++.+++       .
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL-----GERVKIFPANLSDRDEVKALGQKAEADLE   79 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999888888765544332211     136788999999998877764       3


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+|+.....     ..+..+..++.|+.+..++++++..    .+ ..+||++||...+.  ..          
T Consensus        80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~----------  146 (245)
T PRK12936         80 GVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRR-YGRIINITSVVGVT--GN----------  146 (245)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhC-CCEEEEECCHHhCc--CC----------
Confidence            689999999864321     1123456788999999888887642    33 57899999975443  11          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                                .....|+.+|...+.+++.++++.   ++++++++|+.+..+.... .......   ..... ..     
T Consensus       147 ----------~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~-~~~~~~~---~~~~~-~~-----  206 (245)
T PRK12936        147 ----------PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK-LNDKQKE---AIMGA-IP-----  206 (245)
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc-cChHHHH---HHhcC-CC-----
Confidence                      122379999998888888777653   8999999999876543211 1111000   00011 11     


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                      ...+...+|+++++.+++.....  .| .+++.+
T Consensus       207 ~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~  240 (245)
T PRK12936        207 MKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNG  240 (245)
T ss_pred             CCCCcCHHHHHHHHHHHcCccccCcCCCEEEECC
Confidence            13467899999999988865332  23 566644

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.83  E-value=5.8e-19  Score=152.20  Aligned_cols=213  Identities=15%  Similarity=0.139  Sum_probs=145.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------CC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------RG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~~   77 (338)
                      +|+||||||+|.||++++++|.++|++|++++|+.....           ..++.++.+|+.|.+++.+++       .+
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDL-----------PEGVEFVAADLTTAEGCAAVARAVLERLGG   77 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhhc-----------CCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            589999999999999999999999999999999754311           135789999999998776544       36


Q ss_pred             ccEEEEecccCCC-------CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           78 CTGVFHLATPMDF-------ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        78 ~d~vi~~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      +|+|||+||....       ...+..+..+++|+.++..+.+++    ++.+ ..++|++||...+.  .          
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~--~----------  144 (260)
T PRK06523         78 VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG-SGVIIHVTSIQRRL--P----------  144 (260)
T ss_pred             CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEecccccC--C----------
Confidence            8999999985321       112334567889999987776554    3444 56899999976553  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh-------hHHHhhhhc-cc
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP-------SLITALSPI-TR  215 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-------~~~~~~~~~-~~  215 (338)
                               ...+...|+.+|...+.+++.++.++   |+++++++||.+.++........       ......... ..
T Consensus       145 ---------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (260)
T PRK06523        145 ---------LPESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDS  215 (260)
T ss_pred             ---------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence                     01134589999999999999988764   79999999999988753210000       000000000 00


Q ss_pred             -CCCCCCCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          216 -NEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       216 -~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                       .....     ..+...+|+++++.+++.....   +..+.+.+
T Consensus       216 ~~~~p~-----~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdg  254 (260)
T PRK06523        216 LGGIPL-----GRPAEPEEVAELIAFLASDRAASITGTEYVIDG  254 (260)
T ss_pred             hccCcc-----CCCCCHHHHHHHHHHHhCcccccccCceEEecC
Confidence             00111     3466889999999999975322   33555643

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.83  E-value=4e-19  Score=154.09  Aligned_cols=205  Identities=17%  Similarity=0.129  Sum_probs=144.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |+|+||||+|+||++++++|+++|++|++++|+.+..........  ....++.++.+|+.|.+++.++++       ++
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLR--EAGGDGFYQRCDVRDYSQLTALAQACEEKWGGI   78 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            589999999999999999999999999999998665443322211  112468889999999888777654       68


Q ss_pred             cEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |+|||+||......     .+..+..++.|+.+...+.++    +++.+ ..++|++||...+.  .             
T Consensus        79 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~~~~~--~-------------  142 (270)
T PRK05650         79 DVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASMAGLM--Q-------------  142 (270)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECChhhcC--C-------------
Confidence            99999998654211     112234678898887776665    44555 67999999976653  1             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC--hhHHHhhhhcccCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP--PSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  224 (338)
                             ......|+.+|.+.+.+.+.++.++   |+++++++|+.+..+.......  ........   ..       .
T Consensus       143 -------~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~---~~-------~  205 (270)
T PRK05650        143 -------GPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVG---KL-------L  205 (270)
T ss_pred             -------CCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHH---HH-------h
Confidence                   1134589999999998888888774   8999999999998765332110  00000000   00       0


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...+++++|+|+.++.++++.
T Consensus       206 ~~~~~~~~~vA~~i~~~l~~~  226 (270)
T PRK05650        206 EKSPITAADIADYIYQQVAKG  226 (270)
T ss_pred             hcCCCCHHHHHHHHHHHHhCC
Confidence            124689999999999999864

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.83  E-value=6.9e-19  Score=151.97  Aligned_cols=208  Identities=15%  Similarity=0.080  Sum_probs=146.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++++||||+|+||.+++++|+++|++|++++|+++..+.+......  ...++.++.+|+++.+++.++++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--AGRRAHVVAADLAHPEATAGLAGQAVEAFG   86 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            368999999999999999999999999999999986654443322111  12468889999999988876654       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh-----CCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN-----AKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|+|||+|+....     ...+.....+++|+.++.++.+++..     .+ ..++|++||.....             
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~sS~~~~~-------------  152 (263)
T PRK07814         87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSG-GGSVINISSTMGRL-------------  152 (263)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcC-CeEEEEEccccccC-------------
Confidence            68999999985331     11123456789999999999998863     33 57899999964332             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +..+...|+.+|.+.+.+++.++.+.  +++++.++||.+..+...... ...+.   ....+.. ..   
T Consensus       153 ---------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~---~~~~~~~-~~---  216 (263)
T PRK07814        153 ---------AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELR---APMEKAT-PL---  216 (263)
T ss_pred             ---------CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHH---HHHHhcC-CC---
Confidence                     11244589999999999999988875  578999999888654321100 01111   0001110 11   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ......+|+++++++++...
T Consensus       217 --~~~~~~~~va~~~~~l~~~~  236 (263)
T PRK07814        217 --RRLGDPEDIAAAAVYLASPA  236 (263)
T ss_pred             --CCCcCHHHHHHHHHHHcCcc
Confidence              23678899999999998653

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.83  E-value=8.7e-19  Score=151.14  Aligned_cols=212  Identities=16%  Similarity=0.157  Sum_probs=146.1

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |.. .+++++||||+|.||.+++++|+++|++|++++|+.+....+....     ..++.++.+|++|.+++.++++   
T Consensus         1 m~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~   75 (261)
T PRK08265          1 MIGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVV   75 (261)
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHH
Confidence            543 3689999999999999999999999999999999876544433221     1468899999999988877664   


Q ss_pred             ----CccEEEEecccCCC----CCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 ----GCTGVFHLATPMDF----ESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                          .+|++||+|+....    ...+..+..+++|+.++..+.+++...  ....++|++||.....  ..         
T Consensus        76 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~--~~---------  144 (261)
T PRK08265         76 ARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF--AQ---------  144 (261)
T ss_pred             HHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc--CC---------
Confidence                58999999985431    112233467788999998888766431  1146899999976542  10         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                 .....|+.+|...+.+++.++.++   |+++++++||.+..+............ ...........   
T Consensus       145 -----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~-~~~~~~~~~p~---  209 (261)
T PRK08265        145 -----------TGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAK-ADRVAAPFHLL---  209 (261)
T ss_pred             -----------CCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhH-HHHhhcccCCC---
Confidence                       123479999999999999988764   899999999987655321100000000 00000000111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ..+...+|+|+++.+++...
T Consensus       210 --~r~~~p~dva~~~~~l~s~~  229 (261)
T PRK08265        210 --GRVGDPEEVAQVVAFLCSDA  229 (261)
T ss_pred             --CCccCHHHHHHHHHHHcCcc
Confidence              34678999999999999753

>PRK06398 aldose dehydrogenase; Validated

Probab=99.82  E-value=7.1e-19  Score=151.40  Aligned_cols=200  Identities=16%  Similarity=0.169  Sum_probs=142.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|.||.+++++|++.|++|++++|+....             .++.++.+|++|++++.++++       
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-------------~~~~~~~~D~~~~~~i~~~~~~~~~~~~   71 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-------------NDVDYFKVDVSNKEQVIKGIDYVISKYG   71 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-------------CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            368999999999999999999999999999999975432             357899999999988877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++..+++++..    .+ ..++|++||...+.              
T Consensus        72 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  136 (258)
T PRK06398         72 RIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD-KGVIINIASVQSFA--------------  136 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeCcchhcc--------------
Confidence            689999999864311     1122345689999999888877643    33 57999999976653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCC-------CChhHHHhhhhcccCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSS-------MPPSLITALSPITRNEA  218 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~  218 (338)
                              +..+...|+.+|.+.+.+.+.++.++  ++++++++||.+-.+.....       ............ +...
T Consensus       137 --------~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  207 (258)
T PRK06398        137 --------VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIREW-GEMH  207 (258)
T ss_pred             --------CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHhh-hhcC
Confidence                    11244589999999999999998876  48999999998865532110       000000000000 0000


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..     .++...+|+++++++++...
T Consensus       208 ~~-----~~~~~p~eva~~~~~l~s~~  229 (258)
T PRK06398        208 PM-----KRVGKPEEVAYVVAFLASDL  229 (258)
T ss_pred             Cc-----CCCcCHHHHHHHHHHHcCcc
Confidence            11     34778999999999998753

>PRK08017 oxidoreductase; Provisional

Probab=99.82  E-value=4.4e-19  Score=152.58  Aligned_cols=204  Identities=20%  Similarity=0.172  Sum_probs=140.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--------R   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--------~   76 (338)
                      +++|+||||+|+||.++++.|+++|++|++++|+.++.+....        .+++.+.+|++|.+++.+++        .
T Consensus         2 ~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~i~~~~~~   73 (256)
T PRK08017          2 QKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNS--------LGFTGILLDLDDPESVERAADEVIALTDN   73 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh--------CCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999999999999998755443322        25688999999987766544        2


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHH----HHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSI----MRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l----~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|.+||++|.....     ..+..+..++.|+.++.++    ++.+++.+ .+++|++||...+.  .           
T Consensus        74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~--~-----------  139 (256)
T PRK08017         74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG-EGRIVMTSSVMGLI--S-----------  139 (256)
T ss_pred             CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCEEEEEcCccccc--C-----------
Confidence            478999999853311     1122346788899887775    56666666 67899999964432  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHH---HcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC-
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE---ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII-  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  223 (338)
                               ......|+.+|...|.+.+.++.   ..+++++++|||.+..+....     ..   . ..........+ 
T Consensus       140 ---------~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~-----~~---~-~~~~~~~~~~~~  201 (256)
T PRK08017        140 ---------TPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDN-----VN---Q-TQSDKPVENPGI  201 (256)
T ss_pred             ---------CCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhhc-----cc---c-hhhccchhhhHH
Confidence                     11345899999999988776543   348999999998775432111     00   0 00000011111 


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNAK  248 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~~  248 (338)
                      ..+.+++++|+++++..+++++...
T Consensus       202 ~~~~~~~~~d~a~~~~~~~~~~~~~  226 (256)
T PRK08017        202 AARFTLGPEAVVPKLRHALESPKPK  226 (256)
T ss_pred             HhhcCCCHHHHHHHHHHHHhCCCCC
Confidence            1145799999999999999876543

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=142.09  Aligned_cols=211  Identities=18%  Similarity=0.136  Sum_probs=153.8

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh----
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI----   75 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----   75 (338)
                      |+. ..|.++|||||+.||.++++.|.+.|++|+...|+.+..+.+......    ..+..+..|++|.+++.+++    
T Consensus         1 m~~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~----~~~~~~~~DVtD~~~~~~~i~~~~   76 (246)
T COG4221           1 MTTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA----GAALALALDVTDRAAVEAAIEALP   76 (246)
T ss_pred             CCCCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc----CceEEEeeccCCHHHHHHHHHHHH
Confidence            443 357899999999999999999999999999999998877766543321    35889999999998865544    


Q ss_pred             ---CCccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           76 ---RGCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        76 ---~~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                         .++|++||+||...     ....++++.++++|+.+..+..++..    +++ ..++|++||...-.          
T Consensus        77 ~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~SiAG~~----------  145 (246)
T COG4221          77 EEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGSIAGRY----------  145 (246)
T ss_pred             HhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEeccccccc----------
Confidence               36999999998654     22334567899999999999888763    334 45999999975432          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh-hHHHhhhhcccCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP-SLITALSPITRNEAH  219 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~  219 (338)
                                  +-+..+.|+.+|+....+...++++.   +++++.+-||.+-.......-.. .-...-.       .
T Consensus       146 ------------~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~-------~  206 (246)
T COG4221         146 ------------PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADK-------V  206 (246)
T ss_pred             ------------cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHH-------H
Confidence                        11234589999999999998888875   89999999998854321110000 0000000       0


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCCCC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPNAK  248 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~~~  248 (338)
                         ......+..+|+|+++.+++++|..-
T Consensus       207 ---y~~~~~l~p~dIA~~V~~~~~~P~~v  232 (246)
T COG4221         207 ---YKGGTALTPEDIAEAVLFAATQPQHV  232 (246)
T ss_pred             ---hccCCCCCHHHHHHHHHHHHhCCCcc
Confidence               01145899999999999999998653

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.82  E-value=4.3e-19  Score=153.04  Aligned_cols=212  Identities=15%  Similarity=0.099  Sum_probs=146.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||.+++++|+++|++|++++|+.+..+.............++.++.+|++|.+++.++++       +
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   86 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP   86 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999876555443322211112468899999999988877664       6


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||....     ...+..+..+++|+.++..+++++..    .+ ..++|++||...+.  .            
T Consensus        87 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~------------  151 (260)
T PRK07063         87 LDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIASTHAFK--I------------  151 (260)
T ss_pred             CcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECChhhcc--C------------
Confidence            8999999985431     11223456788999999888887643    33 46899999975543  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC--hhHHHhhhhcccCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP--PSLITALSPITRNEAHYPII  223 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  223 (338)
                              ......|+.+|.+.+.+.+.++.++   |++++.++||.+-.+.......  ............ ....   
T Consensus       152 --------~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~---  219 (260)
T PRK07063        152 --------IPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLA-LQPM---  219 (260)
T ss_pred             --------CCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHh-cCCC---
Confidence                    1133479999999999999998775   7999999999886553211000  000000000001 0111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ..+...+|++.++++++...
T Consensus       220 --~r~~~~~~va~~~~fl~s~~  239 (260)
T PRK07063        220 --KRIGRPEEVAMTAVFLASDE  239 (260)
T ss_pred             --CCCCCHHHHHHHHHHHcCcc
Confidence              34678999999999998754

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.82  E-value=9.5e-19  Score=150.69  Aligned_cols=207  Identities=17%  Similarity=0.185  Sum_probs=145.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++||||||+|+||.+++++|++.|++|+++.|+ .+.+.........  ..++.++.+|++|.+++.++++       
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE--GRKVTFVQVDLTKPESAEKVVKEALEEFG   90 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999999999999998 4333333322211  2468899999999988877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+|+.....     ..+..+..++.|+.+...+.+++.    +.+ ..++|++||...+.  ..          
T Consensus        91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~~----------  157 (258)
T PRK06935         91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG-SGKIINIASMLSFQ--GG----------  157 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC-CeEEEEECCHHhcc--CC----------
Confidence            689999999864311     122334678889999877776554    444 57899999987663  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-hhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  223 (338)
                                .....|+.+|.+.+.+++.++++.   |+++++++||.+..+....... .......   ... ..    
T Consensus       158 ----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~---~~~-~~----  219 (258)
T PRK06935        158 ----------KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEI---LKR-IP----  219 (258)
T ss_pred             ----------CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHH---Hhc-CC----
Confidence                      123479999999999999998875   7999999999987664221100 0000000   000 01    


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ...+...+|+++++.+++...
T Consensus       220 -~~~~~~~~dva~~~~~l~s~~  240 (258)
T PRK06935        220 -AGRWGEPDDLMGAAVFLASRA  240 (258)
T ss_pred             -CCCCCCHHHHHHHHHHHcChh
Confidence             145888899999999988753

>PRK08324 short chain dehydrogenase; Validated

Probab=99.82  E-value=3.9e-19  Score=172.34  Aligned_cols=223  Identities=18%  Similarity=0.111  Sum_probs=153.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++||||||+|+||++++++|+++|++|++++|+.+............   .++.++.+|++|.+++.++++       +
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~  498 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFGG  498 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            589999999999999999999999999999999876554443322111   368899999999988877664       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||.....     ..+.....+++|+.+...+++++.    ..+...+||++||...+.  .            
T Consensus       499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~--~------------  564 (681)
T PRK08324        499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVN--P------------  564 (681)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccC--C------------
Confidence            89999999854321     112334678899999999977664    333126899999976653  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCcee-CCCCCCCCChhHHHhhhhcccCCC-----C
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVV-GPFLTSSMPPSLITALSPITRNEA-----H  219 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~-----~  219 (338)
                              ......|+.+|...+.+++.++.++   |+++++++|+.+| +.+...........   ...+...     .
T Consensus       565 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~~~~~---~~~g~~~~~~~~~  633 (681)
T PRK08324        565 --------GPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWIEARA---AAYGLSEEELEEF  633 (681)
T ss_pred             --------CCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhhhhhh---hhccCChHHHHHH
Confidence                    1134589999999999999998775   6999999999998 55422111000000   0001000     1


Q ss_pred             CCCCC-CCccccHHHHHHHHHHhhc--CCCC-CCceEEec
Q 040253          220 YPIIK-QGQFVHLDDLCSAHIFLFE--HPNA-KGRYICSS  255 (338)
Q Consensus       220 ~~~~~-~~~~i~v~D~a~~~~~~l~--~~~~-~~~~~~~~  255 (338)
                      +..+. ..++++++|+|+++..++.  .... +.++++++
T Consensus       634 ~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdg  673 (681)
T PRK08324        634 YRARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDG  673 (681)
T ss_pred             HHhcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence            11111 1569999999999999984  3333 44677744

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.82  E-value=8.7e-19  Score=150.41  Aligned_cols=209  Identities=14%  Similarity=0.108  Sum_probs=141.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--------   75 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--------   75 (338)
                      +|+++||||+|+||.+++++|++.|++|.+..+ +.+..........  .....+..+.+|+.+.+++..++        
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ--SNGGSAFSIGANLESLHGVEALYSSLDNELQ   81 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHH--hcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999988754 3333322221111  11135678889999887655432        


Q ss_pred             -----CCccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           76 -----RGCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        76 -----~~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                           .++|++||+||.....     ..+..+..+++|+.++..+++++...- ...++|++||...+.  .        
T Consensus        82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--~--------  151 (252)
T PRK12747         82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI--S--------  151 (252)
T ss_pred             hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc--C--------
Confidence                 1689999999854311     111235677899999999988775532 135899999987653  1        


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  ......|+.+|.+.+.+++.++.++   |++++++.||.+.++..............   ......  
T Consensus       152 ------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~---~~~~~~--  214 (252)
T PRK12747        152 ------------LPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLSDPMMKQY---ATTISA--  214 (252)
T ss_pred             ------------CCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcccCHHHHHH---HHhcCc--
Confidence                        1133589999999999999988765   89999999999987753211111000000   000001  


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         ..++...+|+++++.+++...
T Consensus       215 ---~~~~~~~~dva~~~~~l~s~~  235 (252)
T PRK12747        215 ---FNRLGEVEDIADTAAFLASPD  235 (252)
T ss_pred             ---ccCCCCHHHHHHHHHHHcCcc
Confidence               135789999999999988643

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=6.4e-19  Score=149.61  Aligned_cols=202  Identities=18%  Similarity=0.202  Sum_probs=144.2

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhhCCcc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPIRGCT   79 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~d   79 (338)
                      |..++|+++||||+|+||.+++++|+++|++|++++|+.....           ..++.++.+|+++. +.+.+.+.++|
T Consensus         1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~-----------~~~~~~~~~D~~~~~~~~~~~~~~id   69 (235)
T PRK06550          1 QEFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL-----------SGNFHFLQLDLSDDLEPLFDWVPSVD   69 (235)
T ss_pred             CCCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc-----------CCcEEEEECChHHHHHHHHHhhCCCC
Confidence            5556789999999999999999999999999999998754321           14678999999987 33334445799


Q ss_pred             EEEEecccCC------CCCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           80 GVFHLATPMD------FESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        80 ~vi~~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      +|||+|+...      ....+..+..+++|+.++.++++++..    .+ ..++|++||...+.  ..            
T Consensus        70 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~------------  134 (235)
T PRK06550         70 ILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK-SGIIINMCSIASFV--AG------------  134 (235)
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhcc--CC------------
Confidence            9999998532      111223456789999999999887753    33 46899999976553  10            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh-hHHHhhhhcccCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP-SLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  225 (338)
                              .....|+.+|...+.+.+.++.++   |+++++++||.+.++.....+.. .......   . ...     .
T Consensus       135 --------~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~---~-~~~-----~  197 (235)
T PRK06550        135 --------GGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVA---R-ETP-----I  197 (235)
T ss_pred             --------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHh---c-cCC-----c
Confidence                    123479999999999998888765   89999999999987754322211 1111110   1 111     1


Q ss_pred             CccccHHHHHHHHHHhhcCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..+...+|+|++++.++...
T Consensus       198 ~~~~~~~~~a~~~~~l~s~~  217 (235)
T PRK06550        198 KRWAEPEEVAELTLFLASGK  217 (235)
T ss_pred             CCCCCHHHHHHHHHHHcChh
Confidence            45788999999999999653

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.1e-18  Score=151.75  Aligned_cols=162  Identities=17%  Similarity=0.163  Sum_probs=123.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------CC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------RG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~~   77 (338)
                      ||+++||||+|+||++++++|+++|++|++++|+......+..        .++.++.+|+.|.+++.+++       .+
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   72 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA--------AGFTAVQLDVNDGAALARLAEELEAEHGG   72 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4799999999999999999999999999999998655443321        35678899999988877665       36


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      +|+|||+||.....     ..+..+..+++|+.++.++++++...   + ..++|++||...+.  ..            
T Consensus        73 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~--~~------------  137 (274)
T PRK05693         73 LDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRS-RGLVVNIGSVSGVL--VT------------  137 (274)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-CCEEEEECCccccC--CC------------
Confidence            89999999854321     11233467889999998888876432   2 36899999865442  10            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPF  197 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~  197 (338)
                              .....|+.+|...+.+.+.++.+   +|+++++++||.+..+.
T Consensus       138 --------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~  180 (274)
T PRK05693        138 --------PFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF  180 (274)
T ss_pred             --------CCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence                    12347999999999988887765   58999999999997653

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.82  E-value=7.5e-19  Score=150.43  Aligned_cols=198  Identities=15%  Similarity=0.100  Sum_probs=143.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++++||||+|+||.+++++|+++|++|++++|++.....+...........++.++.+|++|.+++.++++       +
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            579999999999999999999999999999999876554443221111112468899999999987766553       6


Q ss_pred             ccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||......     .+.....+++|+.+...+++++.    +.+ .+++|++||.....  ..           
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~-----------  147 (248)
T PRK08251         82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG-SGHLVLISSVSAVR--GL-----------  147 (248)
T ss_pred             CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEecccccc--CC-----------
Confidence            899999998643211     12223567899999988887764    344 57899999965542  10           


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                              +.+...|+.+|.+.+.+++.++.++   ++++++++||.+.++....             .+.        .
T Consensus       148 --------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~-------------~~~--------~  198 (248)
T PRK08251        148 --------PGVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK-------------AKS--------T  198 (248)
T ss_pred             --------CCCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc-------------ccc--------C
Confidence                    0124579999999999998888764   7999999999987653211             000        0


Q ss_pred             CccccHHHHHHHHHHhhcCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...+..+|.++.++.++++.
T Consensus       199 ~~~~~~~~~a~~i~~~~~~~  218 (248)
T PRK08251        199 PFMVDTETGVKALVKAIEKE  218 (248)
T ss_pred             CccCCHHHHHHHHHHHHhcC
Confidence            23678999999999999864

>PRK09242 tropinone reductase; Provisional

Probab=99.82  E-value=9.2e-19  Score=150.68  Aligned_cols=210  Identities=17%  Similarity=0.148  Sum_probs=147.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|.||++++++|.++|++|++++|+.+...+............++.++.+|+++.+++.++++       
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999876554443322111112468889999999887766553       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+|+....     ...+..+..+..|+.+...+++++.    +.+ ..++|++||...+.  .           
T Consensus        88 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~~~~~--~-----------  153 (257)
T PRK09242         88 GLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHA-SSAIVNIGSVSGLT--H-----------  153 (257)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CceEEEECccccCC--C-----------
Confidence            68999999986321     1123345678899999999988764    334 57899999976653  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               ..+...|+.+|...+.+++.++.+.   +++++.++||.+.++.........  ......... ..+    
T Consensus       154 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~--~~~~~~~~~-~~~----  217 (257)
T PRK09242        154 ---------VRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDP--DYYEQVIER-TPM----  217 (257)
T ss_pred             ---------CCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCCh--HHHHHHHhc-CCC----
Confidence                     1234579999999999999887664   899999999999887543211110  000000011 111    


Q ss_pred             CCccccHHHHHHHHHHhhcC
Q 040253          225 QGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~  244 (338)
                       ..+...+|++.++..++..
T Consensus       218 -~~~~~~~~va~~~~~l~~~  236 (257)
T PRK09242        218 -RRVGEPEEVAAAVAFLCMP  236 (257)
T ss_pred             -CCCcCHHHHHHHHHHHhCc
Confidence             3466789999999999864

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.82  E-value=4.4e-19  Score=150.11  Aligned_cols=215  Identities=17%  Similarity=0.138  Sum_probs=150.2

Q ss_pred             EEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccEEEEec
Q 040253            9 CVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTGVFHLA   85 (338)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi~~a   85 (338)
                      +||||+|+||++++++|+++|++|++++|+++..........   ...+++++.+|++|.+++.++++   ++|++||++
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~a   77 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG---GGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITA   77 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECC
Confidence            699999999999999999999999999998654433322111   12468899999999999988876   479999999


Q ss_pred             ccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           86 TPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        86 ~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      +.....     ..+..+..++.|+.+..++.++....+ ..++|++||...+.                      +.++.
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~g~iv~~ss~~~~~----------------------~~~~~  134 (230)
T PRK07041         78 ADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAP-GGSLTFVSGFAAVR----------------------PSASG  134 (230)
T ss_pred             CCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcC-CeEEEEECchhhcC----------------------CCCcc
Confidence            864321     123345778899999999999665555 67999999987764                      11245


Q ss_pred             chHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHI  239 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  239 (338)
                      ..|+.+|.+.+.+++.++.+. +++++.++|+.+-.+.................... ...     ..+...+|+++++.
T Consensus       135 ~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~dva~~~~  208 (230)
T PRK07041        135 VLQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAER-LPA-----RRVGQPEDVANAIL  208 (230)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhc-CCC-----CCCcCHHHHHHHHH
Confidence            589999999999999988876 68899999998865432110000000000000011 111     23567899999999


Q ss_pred             HhhcCCCC-CCceEEec
Q 040253          240 FLFEHPNA-KGRYICSS  255 (338)
Q Consensus       240 ~~l~~~~~-~~~~~~~~  255 (338)
                      .++..... +..|++.+
T Consensus       209 ~l~~~~~~~G~~~~v~g  225 (230)
T PRK07041        209 FLAANGFTTGSTVLVDG  225 (230)
T ss_pred             HHhcCCCcCCcEEEeCC
Confidence            99986544 34666643

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.82  E-value=5.2e-19  Score=150.92  Aligned_cols=197  Identities=12%  Similarity=0.136  Sum_probs=142.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----CccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----GCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~   80 (338)
                      ||+|+||||+|+||.+++++|+++|++|++++|+++............ ...+++++.+|++|.+++.++++    ++|+
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-GAVAVSTHELDILDTASHAAFLDSLPALPDI   79 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-cCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence            579999999999999999999999999999999876544332211111 12478999999999998877665    4799


Q ss_pred             EEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      |||++|......     .+.....++.|+.++.++++++..    .+ ..++|++||.....  .               
T Consensus        80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~---------------  141 (243)
T PRK07102         80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARG-SGTIVGISSVAGDR--G---------------  141 (243)
T ss_pred             EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC-CCEEEEEecccccC--C---------------
Confidence            999998543211     111235688999999999887654    34 57899999864332  1               


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcc
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF  228 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                           ......|+.+|...+.+.+.++.+   .|+++++++|+.+.++....               ..  .+   ....
T Consensus       142 -----~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~---------------~~--~~---~~~~  196 (243)
T PRK07102        142 -----RASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG---------------LK--LP---GPLT  196 (243)
T ss_pred             -----CCCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc---------------cC--CC---cccc
Confidence                 012347999999999999888654   38999999999998763211               00  00   0235


Q ss_pred             ccHHHHHHHHHHhhcCC
Q 040253          229 VHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~  245 (338)
                      ...+|+++.+..+++++
T Consensus       197 ~~~~~~a~~i~~~~~~~  213 (243)
T PRK07102        197 AQPEEVAKDIFRAIEKG  213 (243)
T ss_pred             CCHHHHHHHHHHHHhCC
Confidence            77999999999999864

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.1e-18  Score=147.95  Aligned_cols=197  Identities=18%  Similarity=0.161  Sum_probs=139.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------Cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------GC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~   78 (338)
                      .|+|+||||+|+||++++++|+++|++|++++|+....             ...+++.+|++|.+++.++++      ++
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   69 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD-------------FPGELFACDLADIEQTAATLAQINEIHPV   69 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc-------------cCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            57999999999999999999999999999999976541             112678999999988777664      68


Q ss_pred             cEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |+|||+|+......     .+.....++.|+.+..++.+++    ++.+ ..++|++||...++  ..            
T Consensus        70 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~------------  134 (234)
T PRK07577         70 DAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLRE-QGRIVNICSRAIFG--AL------------  134 (234)
T ss_pred             cEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEccccccC--CC------------
Confidence            99999998654211     1223356788888887776655    3445 57999999987664  11            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                               ....|+.+|...+.+++.++.+.   |++++++|||.+..+............ ....... ...     .
T Consensus       135 ---------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~-~~~~~~~-~~~-----~  198 (234)
T PRK07577        135 ---------DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEE-EKRVLAS-IPM-----R  198 (234)
T ss_pred             ---------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhH-HHHHhhc-CCC-----C
Confidence                     23479999999999988877653   899999999999876432111000000 0000000 001     2


Q ss_pred             ccccHHHHHHHHHHhhcCC
Q 040253          227 QFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~  245 (338)
                      .....+|+++++..++..+
T Consensus       199 ~~~~~~~~a~~~~~l~~~~  217 (234)
T PRK07577        199 RLGTPEEVAAAIAFLLSDD  217 (234)
T ss_pred             CCcCHHHHHHHHHHHhCcc
Confidence            3567899999999999764

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.1e-18  Score=150.20  Aligned_cols=209  Identities=15%  Similarity=0.108  Sum_probs=147.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++|+||||+|+||++++++|++.|++|++++|+.+....+......  ...++.++.+|+++.+++.++++       
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEA--EGGAAHVVSLDVTDYQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            358999999999999999999999999999999987654444332211  12468899999999988877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CC-------CccEEEEecCceeeeccCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AK-------TVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-------~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                      ++|++||+++.....     ..+..+..++.|+.+...+++++..    ..       ...++|++||...+.       
T Consensus        86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------  158 (258)
T PRK06949         86 TIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR-------  158 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC-------
Confidence            589999999854321     1123446788899999888876642    11       025899999976653       


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE  217 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  217 (338)
                                     +..+...|+.+|.+.+.+++.++.+.   ++++++++||.++++..............   .+. 
T Consensus       159 ---------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~---~~~-  219 (258)
T PRK06949        159 ---------------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWETEQGQKL---VSM-  219 (258)
T ss_pred             ---------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccChHHHHHH---Hhc-
Confidence                           11134589999999999999888764   89999999999998764321111110000   011 


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..     ...+...+|+++++.+++...
T Consensus       220 ~~-----~~~~~~p~~~~~~~~~l~~~~  242 (258)
T PRK06949        220 LP-----RKRVGKPEDLDGLLLLLAADE  242 (258)
T ss_pred             CC-----CCCCcCHHHHHHHHHHHhChh
Confidence            01     134677899999999998753

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.82  E-value=6.1e-19  Score=152.05  Aligned_cols=202  Identities=17%  Similarity=0.163  Sum_probs=142.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--------   76 (338)
                      ||++|||||+|+||++++++|+++|++|++++|+.+..........    ..++.++.+|++|.+++.++++        
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   76 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG   76 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999998765544433211    1468999999999888776653        


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++..+++++..    .+ ..++|++||.....  ..          
T Consensus        77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--~~----------  143 (260)
T PRK08267         77 RLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP-GARVINTSSASAIY--GQ----------  143 (260)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEeCchhhCc--CC----------
Confidence            579999999864321     1123456789999999999887643    33 57899999975442  11          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                                .....|+.+|...+.+.+.++.+.   ++++++++|+.+..+..............    ..   .    
T Consensus       144 ----------~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~----~~---~----  202 (260)
T PRK08267        144 ----------PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSNEVDAGST----KR---L----  202 (260)
T ss_pred             ----------CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccchhhhhhH----hh---c----
Confidence                      123479999999999999887653   79999999998865432210000000000    00   0    


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ...+..+|++++++.+++..
T Consensus       203 -~~~~~~~~va~~~~~~~~~~  222 (260)
T PRK08267        203 -GVRLTPEDVAEAVWAAVQHP  222 (260)
T ss_pred             -cCCCCHHHHHHHHHHHHhCC
Confidence             12356799999999999754

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.82  E-value=6e-19  Score=150.24  Aligned_cols=193  Identities=14%  Similarity=0.156  Sum_probs=142.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC----ccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG----CTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~d~   80 (338)
                      |++++||||+|+||.+++++|+++|++|++++|+++..+.+...      ..++.++.+|++|.+++.+++++    +|.
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~   74 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ------SANIFTLAFDVTDHPGTKAALSQLPFIPEL   74 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh------cCCCeEEEeeCCCHHHHHHHHHhcccCCCE
Confidence            47899999999999999999999999999999986544433221      13578899999999988887763    689


Q ss_pred             EEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhh
Q 040253           81 VFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVR  154 (338)
Q Consensus        81 vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~  154 (338)
                      +||+|+.....     ..+..+..++.|+.++.++++++... .+..++|++||.....  .                  
T Consensus        75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~--~------------------  134 (240)
T PRK06101         75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASEL--A------------------  134 (240)
T ss_pred             EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhcc--C------------------
Confidence            99999754311     11123467899999999999988753 1135799998854321  0                  


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccH
Q 040253          155 SVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHL  231 (338)
Q Consensus       155 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  231 (338)
                        ......|+.+|...+.+.+.++.+   +|++++++|||.++++.....             ..  ..     ...+..
T Consensus       135 --~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~-------------~~--~~-----~~~~~~  192 (240)
T PRK06101        135 --LPRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN-------------TF--AM-----PMIITV  192 (240)
T ss_pred             --CCCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC-------------CC--CC-----CcccCH
Confidence              013347999999999999888744   489999999999988652210             00  00     124789


Q ss_pred             HHHHHHHHHhhcCC
Q 040253          232 DDLCSAHIFLFEHP  245 (338)
Q Consensus       232 ~D~a~~~~~~l~~~  245 (338)
                      +|+++.+...++..
T Consensus       193 ~~~a~~i~~~i~~~  206 (240)
T PRK06101        193 EQASQEIRAQLARG  206 (240)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999874

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.82  E-value=4.6e-19  Score=156.46  Aligned_cols=183  Identities=17%  Similarity=0.108  Sum_probs=126.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+|+||||+|+||.+++++|+++|++|++++|+.+..... +.+... ....++.++.+|+.|.+++.++++      
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAA-TPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            358999999999999999999999999999999986554332 222211 112468899999999988877653      


Q ss_pred             -CccEEEEecccCCC---CCCCccchhhhhhhHH----HHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMDF---ESKDPENEVIRPTING----MVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~~---~~~~~~~~~~~~n~~~----~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|+|||+||....   ...+..+..+++|+.+    +..+++.+++.+ .+++|++||...+....   ..+++..+.
T Consensus        94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~~~~~~~~---~~~~~~~~~  169 (306)
T PRK06197         94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSSGGHRIRAA---IHFDDLQWE  169 (306)
T ss_pred             CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECCHHHhccCC---CCccccCcc
Confidence             58999999986432   1223345678899999    555666666555 57999999976442111   111111110


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEE--EcCCceeCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFIS--IIPSLVVGPF  197 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~i--lRp~~v~G~~  197 (338)
                            .+..+...|+.+|.+.+.+.+.+++++   ++++++  +.||.+..+.
T Consensus       170 ------~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~  217 (306)
T PRK06197        170 ------RRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL  217 (306)
T ss_pred             ------cCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence                  012355689999999999999988775   555544  5799886553

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.82  E-value=7.9e-19  Score=150.76  Aligned_cols=210  Identities=15%  Similarity=0.133  Sum_probs=146.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++|+||||+|+||.+++++|+++|++|++++|+.+..........  ..+.++..+.+|++|.+++.++++       
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIR--EAGGEALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            35899999999999999999999999999999998765443322221  112468999999999988877654       


Q ss_pred             CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|+|||+++.....      ..+..++.+++|+.+...+++++    .+.+ ..++|++||...+.  .          
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~sS~~~~~--~----------  150 (253)
T PRK06172         84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG-GGAIVNTASVAGLG--A----------  150 (253)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhcc--C----------
Confidence            579999999864311      11233467789999987766543    3344 56899999987664  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                ......|+.+|.+.+.+++.++.++   |++++++.||.+-.+......... .......... ...   
T Consensus       151 ----------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~-~~~~~~~~~~-~~~---  215 (253)
T PRK06172        151 ----------APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEAD-PRKAEFAAAM-HPV---  215 (253)
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccC-hHHHHHHhcc-CCC---
Confidence                      1134589999999999999998875   799999999988655422110000 0000000011 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ..+...+|+++.+.+++...
T Consensus       216 --~~~~~p~~ia~~~~~l~~~~  235 (253)
T PRK06172        216 --GRIGKVEEVASAVLYLCSDG  235 (253)
T ss_pred             --CCccCHHHHHHHHHHHhCcc
Confidence              34678999999999999754

>PRK07069 short chain dehydrogenase; Validated

Probab=99.82  E-value=4.5e-19  Score=152.02  Aligned_cols=210  Identities=17%  Similarity=0.164  Sum_probs=140.9

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC-CCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      +|+||||+|+||.++++.|+++|++|++++|+ .+..+.+............+..+.+|++|.+++.++++       ++
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   80 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL   80 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            48999999999999999999999999999997 44433333221111001234568899999988876653       68


Q ss_pred             cEEEEecccCCCC-----CCCccchhhhhhhH----HHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMDFE-----SKDPENEVIRPTIN----GMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~~~-----~~~~~~~~~~~n~~----~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |+|||+|+.....     ..+.....++.|+.    .+..++.++++.+ .++||++||...+...              
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~ss~~~~~~~--------------  145 (251)
T PRK07069         81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ-PASIVNISSVAAFKAE--------------  145 (251)
T ss_pred             cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEecChhhccCC--------------
Confidence            9999999865421     11122356678887    6677777777766 6799999998776411              


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhH-HHhhhhcccCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSL-ITALSPITRNEAHYPII  223 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  223 (338)
                              .....|+.+|...+.+++.++.+.     +++++.++|+.+.++.......... ....... ......   
T Consensus       146 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~-~~~~~~---  213 (251)
T PRK07069        146 --------PDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKL-ARGVPL---  213 (251)
T ss_pred             --------CCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHH-hccCCC---
Confidence                    123479999999999999887763     4889999999998876432110000 0000000 011111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ..+.+.+|++++++.++..+
T Consensus       214 --~~~~~~~~va~~~~~l~~~~  233 (251)
T PRK07069        214 --GRLGEPDDVAHAVLYLASDE  233 (251)
T ss_pred             --CCCcCHHHHHHHHHHHcCcc
Confidence              34678999999999987653

>PRK12743 oxidoreductase; Provisional

Probab=99.82  E-value=1.3e-18  Score=149.63  Aligned_cols=208  Identities=13%  Similarity=0.120  Sum_probs=144.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ++++|+||||+|+||.+++++|+++|++|+++.|+.. ..........  ....++.++.+|++|++++.++++      
T Consensus         1 ~~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVR--SHGVRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH--hcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3679999999999999999999999999988876433 3322222111  112468899999999988776654      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+++.....     ..+.....+..|+.+...+++++...    ++..++|++||.....             
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~-------------  145 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT-------------  145 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC-------------
Confidence             589999999864421     11233467889999999998877543    2135899999964321             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +..+...|+.+|...+.+++.++.++   |++++.++||.+.++..... ......  ..  ......   
T Consensus       146 ---------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~-~~~~~~--~~--~~~~~~---  208 (256)
T PRK12743        146 ---------PLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMD-DSDVKP--DS--RPGIPL---  208 (256)
T ss_pred             ---------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCcccccc-ChHHHH--HH--HhcCCC---
Confidence                     11245589999999999999888764   79999999999998753221 111110  00  001111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ..+.+.+|+++++..++...
T Consensus       209 --~~~~~~~dva~~~~~l~~~~  228 (256)
T PRK12743        209 --GRPGDTHEIASLVAWLCSEG  228 (256)
T ss_pred             --CCCCCHHHHHHHHHHHhCcc
Confidence              23668899999999988654

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.82  E-value=1.2e-18  Score=149.91  Aligned_cols=217  Identities=18%  Similarity=0.146  Sum_probs=146.5

Q ss_pred             CCCCCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCC-----------cHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            1 MGSIAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPD-----------NKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         1 m~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~-----------~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      |..++++||||||+|  .||.+++++|+++|++|++++|++.           ....+....  .....+++++.+|+++
T Consensus         1 ~~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~   78 (256)
T PRK12748          1 LPLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEI--ESYGVRCEHMEIDLSQ   78 (256)
T ss_pred             CCCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHH--HhcCCeEEEEECCCCC
Confidence            556678999999996  6999999999999999999998722           111111111  1112468999999999


Q ss_pred             CCCchhhhC-------CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceee
Q 040253           68 EGNFDEPIR-------GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTL  132 (338)
Q Consensus        68 ~~~~~~~~~-------~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~  132 (338)
                      .+++.++++       ++|+|||+|+......     .+..+..+++|+.++..+++++...   ....++|++||...+
T Consensus        79 ~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~  158 (256)
T PRK12748         79 PYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSL  158 (256)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCcccc
Confidence            888766553       5899999998643211     1223456889999999999887543   114689999998666


Q ss_pred             eccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHh
Q 040253          133 DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITA  209 (338)
Q Consensus       133 ~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~  209 (338)
                      .                      +......|+.+|.+.+.+++.++.++   +++++.++||.+..+....    .....
T Consensus       159 ~----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~----~~~~~  212 (256)
T PRK12748        159 G----------------------PMPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE----ELKHH  212 (256)
T ss_pred             C----------------------CCCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh----hHHHh
Confidence            4                      11133479999999999999887764   8999999998876553221    11000


Q ss_pred             hhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe
Q 040253          210 LSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS  254 (338)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~  254 (338)
                      .   ..   ..+   ...+...+|+++++.+++....  ..| .+++.
T Consensus       213 ~---~~---~~~---~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d  251 (256)
T PRK12748        213 L---VP---KFP---QGRVGEPVDAARLIAFLVSEEAKWITGQVIHSE  251 (256)
T ss_pred             h---hc---cCC---CCCCcCHHHHHHHHHHHhCcccccccCCEEEec
Confidence            0   00   011   0235567999999998886532  234 44553

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.82  E-value=1.4e-18  Score=145.63  Aligned_cols=206  Identities=19%  Similarity=0.191  Sum_probs=154.4

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +++++++|||||+.||..++++|+++|++|+.+.|+.++...+........ +-.++++.+|+++++++.++..      
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            346899999999999999999999999999999999988777755443222 2467899999999999888663      


Q ss_pred             -CccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       .+|++||+||...     ....+...+.++.|+.+...|..+.    .+.+ ..++|+++|...+-             
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S~ag~~-------------  148 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGSAAGLI-------------  148 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechhhcC-------------
Confidence             5999999998544     2233445678999999888776654    4444 57999999987773             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +.+-...|+.||...-.+-+.++.+.   |+.++.|-||.+.-+.....             +.. .....
T Consensus       149 ---------p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~~-------------~~~-~~~~~  205 (265)
T COG0300         149 ---------PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDAK-------------GSD-VYLLS  205 (265)
T ss_pred             ---------CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCcccccccccc-------------ccc-ccccc
Confidence                     22234589999999988888777765   79999999988876553210             000 00000


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ...-++..+|+|+..+..+.+..
T Consensus       206 ~~~~~~~~~~va~~~~~~l~~~k  228 (265)
T COG0300         206 PGELVLSPEDVAEAALKALEKGK  228 (265)
T ss_pred             chhhccCHHHHHHHHHHHHhcCC
Confidence            12458899999999999998853

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.82  E-value=1.8e-18  Score=150.61  Aligned_cols=209  Identities=16%  Similarity=0.158  Sum_probs=144.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      .++++||||+|+||++++++|+++|++|++++|+.+....+......  ...++.++.+|+.|.+++.++++       +
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA--AGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999986554443322111  12468899999999988776653       6


Q ss_pred             ccEEEEecccCCCC--------------------CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeee
Q 040253           78 CTGVFHLATPMDFE--------------------SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        78 ~d~vi~~a~~~~~~--------------------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~  133 (338)
                      +|++||+|+.....                    ..+.....+++|+.+...+++++    .+.+ ..++|++||...+.
T Consensus        88 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~  166 (278)
T PRK08277         88 CDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK-GGNIINISSMNAFT  166 (278)
T ss_pred             CCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEccchhcC
Confidence            89999999853211                    01223456788988887665543    3444 57899999987764


Q ss_pred             ccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh---hHH
Q 040253          134 VEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP---SLI  207 (338)
Q Consensus       134 ~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~---~~~  207 (338)
                                            +..+...|+.+|.+.+.+++.++.++   |+++++++||.+..+........   ...
T Consensus       167 ----------------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~  224 (278)
T PRK08277        167 ----------------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLT  224 (278)
T ss_pred             ----------------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccch
Confidence                                  11234579999999999999998876   79999999999987742211000   000


Q ss_pred             HhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          208 TALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      ......... ..     ..++...+|+|+++++++..
T Consensus       225 ~~~~~~~~~-~p-----~~r~~~~~dva~~~~~l~s~  255 (278)
T PRK08277        225 ERANKILAH-TP-----MGRFGKPEELLGTLLWLADE  255 (278)
T ss_pred             hHHHHHhcc-CC-----ccCCCCHHHHHHHHHHHcCc
Confidence            000000000 01     13577899999999998875

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.2e-18  Score=149.80  Aligned_cols=205  Identities=18%  Similarity=0.173  Sum_probs=139.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++|+||||+|+||.+++++|+++|++|++++|+...........       ...++.+|++|.+++.++++       
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-------GGLFVPTDVTDEDAVNALFDTAAETYG   78 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc-------CCcEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999765443332211       12678899999988877664       


Q ss_pred             CccEEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCce-eeeccCCCCCCcCC
Q 040253           77 GCTGVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAG-TLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~-v~~~~~~~~~~~~e  144 (338)
                      ++|+|||+|+.....       ..+..+..++.|+.++..+++.+.    +.+ ..++|++||.. +++  .        
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~-~g~iv~~sS~~~~~g--~--------  147 (255)
T PRK06057         79 SVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQG-KGSIINTASFVAVMG--S--------  147 (255)
T ss_pred             CCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhC-CcEEEEEcchhhccC--C--------
Confidence            579999999864311       111234678899998887776653    334 46899998854 343  1        


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  ..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++.................    ...+
T Consensus       148 ------------~~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~----~~~~  211 (255)
T PRK06057        148 ------------ATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRL----VHVP  211 (255)
T ss_pred             ------------CCCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHH----hcCC
Confidence                        0123479999988887777665543   89999999999988753322111000000000    0111


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         ..++..++|+++++..++...
T Consensus       212 ---~~~~~~~~~~a~~~~~l~~~~  232 (255)
T PRK06057        212 ---MGRFAEPEEIAAAVAFLASDD  232 (255)
T ss_pred             ---CCCCcCHHHHHHHHHHHhCcc
Confidence               135889999999999888653

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.81  E-value=1.2e-18  Score=149.97  Aligned_cols=225  Identities=12%  Similarity=0.095  Sum_probs=145.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhc-CCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +++++||||+|+||.+++++|+++|++|+++.++.. ..+..+.... +.....++.++.+|++|.+++.++++      
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   87 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAAF   87 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999777776432 2222222211 11112468899999999988877654      


Q ss_pred             -CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       ++|++||+||....     ...+..+..+++|+.++..+++++...- ...++++++|+....  ..            
T Consensus        88 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~--~~------------  153 (257)
T PRK12744         88 GRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGA--FT------------  153 (257)
T ss_pred             CCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcc--cC------------
Confidence             68999999986331     1122344678899999999888876431 124566664333221  00            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                              +....|+.+|.+.|.+++.++.++   |+++++++||.+.++...+............ ......+   ...
T Consensus       154 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~-~~~~~~~---~~~  221 (257)
T PRK12744        154 --------PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAEAVAYHKT-AAALSPF---SKT  221 (257)
T ss_pred             --------CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccchhhcccc-ccccccc---ccC
Confidence                    123479999999999999999885   6999999999997764322111000000000 0000011   113


Q ss_pred             ccccHHHHHHHHHHhhcCCC--CCCceEEec
Q 040253          227 QFVHLDDLCSAHIFLFEHPN--AKGRYICSS  255 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~--~~~~~~~~~  255 (338)
                      .+.+.+|+++++..++....  .+..+++.+
T Consensus       222 ~~~~~~dva~~~~~l~~~~~~~~g~~~~~~g  252 (257)
T PRK12744        222 GLTDIEDIVPFIRFLVTDGWWITGQTILING  252 (257)
T ss_pred             CCCCHHHHHHHHHHhhcccceeecceEeecC
Confidence            58899999999999998521  134566543

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.81  E-value=1.3e-18  Score=148.87  Aligned_cols=210  Identities=16%  Similarity=0.134  Sum_probs=139.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +|+|+||||+|+||++++++|+++|++|.++.+ +++...........  ...++.++.+|++|.+++.++++       
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA--AGGRACVVAGDVANEADVIAMFDAVQSAFG   79 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            689999999999999999999999999887654 43333332221111  11468899999999988776553       


Q ss_pred             CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHh-CC-----CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKN-AK-----TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~-~~-----~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                      ++|+|||+||.....      ..+.....+++|+.+...+++++.. ..     +..+||++||...+.  ..       
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~--~~-------  150 (248)
T PRK06947         80 RLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRL--GS-------  150 (248)
T ss_pred             CCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcC--CC-------
Confidence            689999999864311      1122245688999998888654332 11     124699999875442  10       


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  ......|+.+|...+.+++.+++++   +++++++|||.+..+.............    .+..... 
T Consensus       151 ------------~~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~----~~~~~~~-  213 (248)
T PRK06947        151 ------------PNEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQPGRAAR----LGAQTPL-  213 (248)
T ss_pred             ------------CCCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCHHHHHH----HhhcCCC-
Confidence                        0012369999999999998888775   7999999999998775321101111000    0111111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                          ......+|+++.++.++..+.
T Consensus       214 ----~~~~~~e~va~~~~~l~~~~~  234 (248)
T PRK06947        214 ----GRAGEADEVAETIVWLLSDAA  234 (248)
T ss_pred             ----CCCcCHHHHHHHHHHHcCccc
Confidence                235678999999999988654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=3.2e-18  Score=146.87  Aligned_cols=220  Identities=15%  Similarity=0.184  Sum_probs=149.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |....++++||||+|+||.++++.|+++|++|++++|+.............  ...++.++.+|+++.+++.++++    
T Consensus         1 ~~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (253)
T PRK08217          1 MDLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA--LGTEVRGYAANVTDEEDVEATFAQIAE   78 (253)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            555568999999999999999999999999999999986543333221111  12467889999999887766553    


Q ss_pred             ---CccEEEEecccCCCC--------------CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeecc
Q 040253           77 ---GCTGVFHLATPMDFE--------------SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVE  135 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~--------------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~  135 (338)
                         ++|+|||+||.....              ..+.....++.|+.++..+.+++.    +.....+++++||...++  
T Consensus        79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~--  156 (253)
T PRK08217         79 DFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAG--  156 (253)
T ss_pred             HcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccC--
Confidence               479999999853311              011223466789988877765432    222135799999977664  


Q ss_pred             CCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhh
Q 040253          136 EHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSP  212 (338)
Q Consensus       136 ~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  212 (338)
                      .                     .+...|+.+|.+.+.+++.++++   .+++++.++|+.+.++......+. ...... 
T Consensus       157 ~---------------------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~~~~~-~~~~~~-  213 (253)
T PRK08217        157 N---------------------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAAMKPE-ALERLE-  213 (253)
T ss_pred             C---------------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCHH-HHHHHH-
Confidence            1                     13457999999999999988865   489999999999987754321111 111110 


Q ss_pred             cccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          213 ITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                        .. ...     ..+.+.+|+++++..++......| ++++.+
T Consensus       214 --~~-~~~-----~~~~~~~~~a~~~~~l~~~~~~~g~~~~~~g  249 (253)
T PRK08217        214 --KM-IPV-----GRLGEPEEIAHTVRFIIENDYVTGRVLEIDG  249 (253)
T ss_pred             --hc-CCc-----CCCcCHHHHHHHHHHHHcCCCcCCcEEEeCC
Confidence              11 111     347789999999999997644344 566644

>PRK08589 short chain dehydrogenase; Validated

Probab=99.81  E-value=2.1e-18  Score=149.60  Aligned_cols=214  Identities=14%  Similarity=0.121  Sum_probs=143.7

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |.. .+|++|||||+|.||.+++++|+++|++|++++|+ +..... ..+..   ...++..+.+|++|.+++.++++  
T Consensus         1 m~~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~   76 (272)
T PRK08589          1 MKRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS---NGGKAKAYHVDISDEQQVKDFASEI   76 (272)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHHHHHH
Confidence            443 36899999999999999999999999999999998 433332 22221   12468899999999988776653  


Q ss_pred             -----CccEEEEecccCCC--CC-C---CccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 -----GCTGVFHLATPMDF--ES-K---DPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~--~~-~---~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                           ++|++||+||....  .. .   +..+..+++|+.+...+.+++...  ....++|++||...+.  .       
T Consensus        77 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~-------  147 (272)
T PRK08589         77 KEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQA--A-------  147 (272)
T ss_pred             HHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcC--C-------
Confidence                 58999999986431  11 1   123456778988887776665432  1125899999976653  1       


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC---hhHHHhhhhcccCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP---PSLITALSPITRNE  217 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~~~~~  217 (338)
                                   ......|+.+|.+.+.+++.++.++   |++++++.||.+..+.......   ..............
T Consensus       148 -------------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  214 (272)
T PRK08589        148 -------------DLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQKWM  214 (272)
T ss_pred             -------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhhcc
Confidence                         1123479999999999999998765   7999999999987653221000   00000000000000


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..     ...+...+|+++++++++...
T Consensus       215 ~~-----~~~~~~~~~va~~~~~l~s~~  237 (272)
T PRK08589        215 TP-----LGRLGKPEEVAKLVVFLASDD  237 (272)
T ss_pred             CC-----CCCCcCHHHHHHHHHHHcCch
Confidence            01     134778999999999998753

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.81  E-value=4.8e-18  Score=145.93  Aligned_cols=208  Identities=16%  Similarity=0.155  Sum_probs=143.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..++++||||+|.||++++++|++.|++|++++|+.+. .... +.+...   ..++..+.+|++|.+++.++++     
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~i~~~~~~~~~~   83 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA---GRRAIQIAADVTSKADLRAAVARTEAE   83 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999997543 2222 222111   2467889999999988877654     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|++||+||.....     ..+..+..+++|+.++..+++++.    ..+ ..++|++||.+.+.  ..        
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--~~--------  152 (254)
T PRK06114         84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG-GGSIVNIASMSGII--VN--------  152 (254)
T ss_pred             cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CcEEEEECchhhcC--CC--------
Confidence              479999999864321     122345678899999977766653    334 56899999976542  11        


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +..+...|+.+|.+.+.+++.++.+.   |+++++++||.+.++........   ...... ....+.  
T Consensus       153 ----------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~---~~~~~~-~~~~p~--  216 (254)
T PRK06114        153 ----------RGLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMV---HQTKLF-EEQTPM--  216 (254)
T ss_pred             ----------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccch---HHHHHH-HhcCCC--
Confidence                      00123479999999999999988754   89999999999987653211000   000000 111111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                         .++...+|++.++++++..
T Consensus       217 ---~r~~~~~dva~~~~~l~s~  235 (254)
T PRK06114        217 ---QRMAKVDEMVGPAVFLLSD  235 (254)
T ss_pred             ---CCCcCHHHHHHHHHHHcCc
Confidence               3477899999999999864

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.81  E-value=1.8e-18  Score=149.40  Aligned_cols=210  Identities=14%  Similarity=0.103  Sum_probs=143.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++++|+||||+|+||.+++++|+++|++|++++|+++...........  ...++.++.+|++|.+++.++++       
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ--AGPEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            357999999999999999999999999999999986554333221111  11457889999999988877654       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      ++|+|||+|+....     ...+.....+++|+.++.++++++...  ....++|++||...+.  .             
T Consensus        86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~--~-------------  150 (264)
T PRK07576         86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFV--P-------------  150 (264)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhcc--C-------------
Confidence            57999999974321     112233456789999999998877542  1135899999975442  1             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCC-CCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPF-LTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             ......|+.+|...+.+++.++.+.   |++++.++|+.+.+.. ..........  .... .....+     
T Consensus       151 -------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~--~~~~-~~~~~~-----  215 (264)
T PRK07576        151 -------MPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPEL--QAAV-AQSVPL-----  215 (264)
T ss_pred             -------CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHH--HHHH-HhcCCC-----
Confidence                   1134589999999999999987764   7999999999887532 1100010000  0000 011111     


Q ss_pred             CccccHHHHHHHHHHhhcCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .++...+|++++++.++..+
T Consensus       216 ~~~~~~~dva~~~~~l~~~~  235 (264)
T PRK07576        216 KRNGTKQDIANAALFLASDM  235 (264)
T ss_pred             CCCCCHHHHHHHHHHHcChh
Confidence            34778999999999999753

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.81  E-value=4.6e-18  Score=145.81  Aligned_cols=196  Identities=11%  Similarity=0.105  Sum_probs=138.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCc-HHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDN-KKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~-~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      +.++|+||||+|.||.+++++|+++| ++|++++|+++. .+.+.. +...  ...+++++.+|+.|.+++.++++    
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~--~~~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA--GASSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc--CCCceEEEEecCCChHHHHHHHHHHHh
Confidence            46899999999999999999999985 999999998764 333322 2221  11368999999999887665443    


Q ss_pred             --CccEEEEecccCCCCCC--Ccc---chhhhhhhHHHHH----HHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDFESK--DPE---NEVIRPTINGMVS----IMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~~~--~~~---~~~~~~n~~~~~~----l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|++||++|.......  ...   .+.+++|+.+...    +++.+.+.+ ..++|++||...+.  .         
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~-~~~iv~isS~~g~~--~---------  152 (253)
T PRK07904         85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG-FGQIIAMSSVAGER--V---------  152 (253)
T ss_pred             cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC-CceEEEEechhhcC--C---------
Confidence              69999999986432111  111   1358899988776    556666666 68999999975432  1         


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                 ..+...|+.+|.+...+.+.++.+   +++++++++||.+..+....            . .. .    
T Consensus       153 -----------~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~------------~-~~-~----  203 (253)
T PRK07904        153 -----------RRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAH------------A-KE-A----  203 (253)
T ss_pred             -----------CCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhcc------------C-CC-C----
Confidence                       012347999999998776666544   48999999999997643110            0 00 0    


Q ss_pred             CCCCccccHHHHHHHHHHhhcCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         ...+..+|+|+.+...+.++
T Consensus       204 ---~~~~~~~~~A~~i~~~~~~~  223 (253)
T PRK07904        204 ---PLTVDKEDVAKLAVTAVAKG  223 (253)
T ss_pred             ---CCCCCHHHHHHHHHHHHHcC
Confidence               12468999999999999875

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.81  E-value=3.4e-18  Score=152.29  Aligned_cols=203  Identities=17%  Similarity=0.113  Sum_probs=142.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++|+||||+|.||.+++++|+++|++|++++|+.+..+........  ...++.++.+|++|.+++.++++       +
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~--~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA--AGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--cCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            57899999999999999999999999999999986654443322111  12468899999999998877653       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHH----HHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIM----RACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~----~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+|+.....     ..+..+..+++|+.+..++.    ..+++.+ ..+||++||...+.  .            
T Consensus        86 iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS~~~~~--~------------  150 (334)
T PRK07109         86 IDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGSALAYR--S------------  150 (334)
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCChhhcc--C------------
Confidence            89999999854311     11223456778877766654    4444444 57899999987774  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                              .+....|+.+|...+.+.+.++.+.     ++++++++|+.+..|....     .....   ......    
T Consensus       151 --------~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~-----~~~~~---~~~~~~----  210 (334)
T PRK07109        151 --------IPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW-----ARSRL---PVEPQP----  210 (334)
T ss_pred             --------CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh-----hhhhc---cccccC----
Confidence                    1134589999999998888877653     6999999999887654211     00000   000000    


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ...+...+|+|++++.++.++
T Consensus       211 -~~~~~~pe~vA~~i~~~~~~~  231 (334)
T PRK07109        211 -VPPIYQPEVVADAILYAAEHP  231 (334)
T ss_pred             -CCCCCCHHHHHHHHHHHHhCC
Confidence             134678999999999999875

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.81  E-value=2.1e-18  Score=146.70  Aligned_cols=214  Identities=17%  Similarity=0.172  Sum_probs=146.0

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Ccc
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GCT   79 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d   79 (338)
                      |+||||+|+||++++++|+++|++|++++|+.. ..........  .....+.++.+|++|.+++.+++.       .+|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELK--AYGVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH--hcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            689999999999999999999999999998752 2222211111  111357899999999988877664       479


Q ss_pred             EEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           80 GVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        80 ~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      +|||+++.....     ..+..+..++.|+.++..+++++..    .+ .++|+++||...+.  ..             
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~~v~~sS~~~~~--g~-------------  142 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQR-SGRIINISSVVGLM--GN-------------  142 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEECCccccC--CC-------------
Confidence            999999965321     1123356788999999999888764    33 56999999965442  10             


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                             .+...|+.+|.+.+.+++.++++   .|++++++||+.+.++.... .........   .... .+     ..
T Consensus       143 -------~~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~-~~~~~~~~~---~~~~-~~-----~~  205 (239)
T TIGR01830       143 -------AGQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK-LSEKVKKKI---LSQI-PL-----GR  205 (239)
T ss_pred             -------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh-cChHHHHHH---HhcC-Cc-----CC
Confidence                   12347999999999988887765   38999999999886653221 111111111   1111 11     34


Q ss_pred             cccHHHHHHHHHHhhcCCCC---CCceEEecC
Q 040253          228 FVHLDDLCSAHIFLFEHPNA---KGRYICSSH  256 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~---~~~~~~~~~  256 (338)
                      +.+++|+++++..++.....   +.+|+++++
T Consensus       206 ~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g  237 (239)
T TIGR01830       206 FGTPEEVANAVAFLASDEASYITGQVIHVDGG  237 (239)
T ss_pred             CcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence            77899999999988854322   336677543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.81  E-value=3.9e-18  Score=149.31  Aligned_cols=199  Identities=16%  Similarity=0.137  Sum_probs=142.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++|+||||+|+||.+++++|+++|++|++++|+.+..+........  ...++.++.+|++|.+++.++++       
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  116 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR--AGGDAMAVPCDLSDLDAVDALVADVEKRIG  116 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            358999999999999999999999999999999986554443322211  11457889999999988877765       


Q ss_pred             CccEEEEecccCCCCC-C------CccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDFES-K------DPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~-~------~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|+|||+||...... .      +..+..+++|+.+...+++++.    ..+ ..++|++||.+++.  ..        
T Consensus       117 ~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--~~--------  185 (293)
T PRK05866        117 GVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERG-DGHIINVATWGVLS--EA--------  185 (293)
T ss_pred             CCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhcC--CC--------
Confidence            7899999998643211 0      1123568889999888777653    445 57999999976553  10        


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                 .+....|+.+|.+.+.+++.++.++   |+++++++||.+-.+.....             ..   .  
T Consensus       186 -----------~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~~-------------~~---~--  236 (293)
T PRK05866        186 -----------SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAPT-------------KA---Y--  236 (293)
T ss_pred             -----------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCcccccc-------------cc---c--
Confidence                       0123479999999999988887765   89999999987755432100             00   0  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       .....+..+++|+.+..++++.
T Consensus       237 -~~~~~~~pe~vA~~~~~~~~~~  258 (293)
T PRK05866        237 -DGLPALTADEAAEWMVTAARTR  258 (293)
T ss_pred             -cCCCCCCHHHHHHHHHHHHhcC
Confidence             0023468999999999999864

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.80  E-value=2.1e-18  Score=148.97  Aligned_cols=205  Identities=17%  Similarity=0.128  Sum_probs=146.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+++++||||+|+||.+++++|+++|++|++++|+.+...........   ..++.++.+|++|.+++.++++    
T Consensus         1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~   77 (263)
T PRK09072          1 MDLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARARE   77 (263)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHh
Confidence            566678999999999999999999999999999999986655444332211   2478899999999988776653    


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|+|||+||.....     ..+.....++.|+.++.++++++..    .+ ..++|++||...+.  ..        
T Consensus        78 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--~~--------  146 (263)
T PRK09072         78 MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQP-SAMVVNVGSTFGSI--GY--------  146 (263)
T ss_pred             cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEecChhhCc--CC--------
Confidence              589999999864321     1122346778999999998887753    23 46799998864432  10        


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                  .....|+.+|...+.+++.++.++   +++++++.||.+..+....     ..   ......   +  
T Consensus       147 ------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~-----~~---~~~~~~---~--  201 (263)
T PRK09072        147 ------------PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE-----AV---QALNRA---L--  201 (263)
T ss_pred             ------------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh-----hc---cccccc---c--
Confidence                        123479999999998888888764   7999999998876543111     00   000000   0  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                        ......++|+|+++..++++..
T Consensus       202 --~~~~~~~~~va~~i~~~~~~~~  223 (263)
T PRK09072        202 --GNAMDDPEDVAAAVLQAIEKER  223 (263)
T ss_pred             --cCCCCCHHHHHHHHHHHHhCCC
Confidence              1246789999999999999753

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.80  E-value=3.3e-18  Score=131.84  Aligned_cols=202  Identities=19%  Similarity=0.224  Sum_probs=148.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |||.|+||||.+|+++++..+.+||+|++++|++.+....          +++.+++.|+.|++.+.+.+.+.|+||..-
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~   70 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLAGHDAVISAF   70 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhcCCceEEEec
Confidence            6999999999999999999999999999999998765432          467899999999999999999999999877


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +...   .++.    .........|++..+..+ ++|++.++.++-......  ..+-+          .|..|...|..
T Consensus        71 ~~~~---~~~~----~~~~k~~~~li~~l~~ag-v~RllVVGGAGSL~id~g--~rLvD----------~p~fP~ey~~~  130 (211)
T COG2910          71 GAGA---SDND----ELHSKSIEALIEALKGAG-VPRLLVVGGAGSLEIDEG--TRLVD----------TPDFPAEYKPE  130 (211)
T ss_pred             cCCC---CChh----HHHHHHHHHHHHHHhhcC-CeeEEEEcCccceEEcCC--ceeec----------CCCCchhHHHH
Confidence            6432   1111    222334677888888888 899999988765542222  22211          23346667888


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ++..+|. +..+..+..++||.+-|+.++-|+........         +..........-++|+..|.|-+++.-++++
T Consensus       131 A~~~ae~-L~~Lr~~~~l~WTfvSPaa~f~PGerTg~yrl---------ggD~ll~n~~G~SrIS~aDYAiA~lDe~E~~  200 (211)
T COG2910         131 ALAQAEF-LDSLRAEKSLDWTFVSPAAFFEPGERTGNYRL---------GGDQLLVNAKGESRISYADYAIAVLDELEKP  200 (211)
T ss_pred             HHHHHHH-HHHHhhccCcceEEeCcHHhcCCccccCceEe---------ccceEEEcCCCceeeeHHHHHHHHHHHHhcc
Confidence            8888884 44555556799999999999999765543211         2222333333357999999999999999987


Q ss_pred             CC
Q 040253          246 NA  247 (338)
Q Consensus       246 ~~  247 (338)
                      .-
T Consensus       201 ~h  202 (211)
T COG2910         201 QH  202 (211)
T ss_pred             cc
Confidence            53

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.5e-18  Score=149.61  Aligned_cols=215  Identities=16%  Similarity=0.120  Sum_probs=147.7

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |.. ..++|+||||+|+||++++++|.++|++ |++++|+.++.........  ....++.++.+|+++++++.++++  
T Consensus         1 ~~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~   78 (260)
T PRK06198          1 MGRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELE--ALGAKAVFVQADLSDVEDCRRVVAAA   78 (260)
T ss_pred             CCCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            443 3588999999999999999999999998 9999997655443322111  112467889999999988877654  


Q ss_pred             -----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCc
Q 040253           77 -----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                           ++|+|||+++.....     ..+..+..++.|+.+..++++++..    .+...++|++||...++  ..     
T Consensus        79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~--~~-----  151 (260)
T PRK06198         79 DEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHG--GQ-----  151 (260)
T ss_pred             HHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCccccc--CC-----
Confidence                 589999999864321     1122345688999999998877643    22135899999987764  11     


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCC---CCChhHHHhhhhcccC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTS---SMPPSLITALSPITRN  216 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~~  216 (338)
                                     .....|+.+|...|.+++.++.++   +++++.++|+.++++....   .+......+..... .
T Consensus       152 ---------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~-~  215 (260)
T PRK06198        152 ---------------PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAA-A  215 (260)
T ss_pred             ---------------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHh-c
Confidence                           123479999999999999888765   6999999999998875321   00000000011000 1


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...+     ..+++.+|+++++.+++...
T Consensus       216 ~~~~-----~~~~~~~~~a~~~~~l~~~~  239 (260)
T PRK06198        216 TQPF-----GRLLDPDEVARAVAFLLSDE  239 (260)
T ss_pred             cCCc-----cCCcCHHHHHHHHHHHcChh
Confidence            1111     35789999999999998643

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.80  E-value=2.8e-18  Score=148.16  Aligned_cols=210  Identities=19%  Similarity=0.153  Sum_probs=143.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++++||||+|+||++++++|+++|++|++++|+.........+..   ...++.++.+|+++.+++.++++       
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCG---RGHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHH---hCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999997643322222221   12467889999999988877654       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+|+.....     ..+..++.++.|+.+...+++++..    .+ ..++|++||.....  .           
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~--~-----------  147 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARK-DGRIVMMSSVTGDM--V-----------  147 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEECcHHhcc--c-----------
Confidence            589999999864321     1122334688999999998887653    33 56899999864321  0           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC----ChhHHHhhhhcccCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM----PPSLITALSPITRNEAHY  220 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~  220 (338)
                              +......|+.+|...+.+++.++.++   +++++.++||.+.++......    .............. ...
T Consensus       148 --------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~p~  218 (263)
T PRK08226        148 --------ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKA-IPL  218 (263)
T ss_pred             --------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhcc-CCC
Confidence                    01123479999999999999988775   799999999999876422100    00000111111111 111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                           ..+...+|+++++..++..
T Consensus       219 -----~~~~~~~~va~~~~~l~~~  237 (263)
T PRK08226        219 -----RRLADPLEVGELAAFLASD  237 (263)
T ss_pred             -----CCCCCHHHHHHHHHHHcCc
Confidence                 3467899999999988854

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.80  E-value=2.3e-18  Score=147.87  Aligned_cols=209  Identities=15%  Similarity=0.148  Sum_probs=145.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|.||.+++++|+++|++|++++|+.+..+........  ...++..+.+|++|++++.++++       
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT--SGGKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999987655444332211  12467889999999988877653       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+|+.....     ..+..+..+++|+.+...+.+++...    +...++|++||.+..-  ..          
T Consensus        86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--~~----------  153 (253)
T PRK05867         86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHI--IN----------  153 (253)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcC--CC----------
Confidence            689999999864421     11233456789999999888876432    2124799998864321  00          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              .+.....|+.+|.+.+.+++.++.++   |+++++++||.+-.+.... ... .....   .. ....    
T Consensus       154 --------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~-~~~-~~~~~---~~-~~~~----  215 (253)
T PRK05867        154 --------VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEP-YTE-YQPLW---EP-KIPL----  215 (253)
T ss_pred             --------CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCccccc-chH-HHHHH---Hh-cCCC----
Confidence                    00122479999999999999998775   8999999999986654221 111 11000   01 1111    


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       .++...+|+|+++++++...
T Consensus       216 -~r~~~p~~va~~~~~L~s~~  235 (253)
T PRK05867        216 -GRLGRPEELAGLYLYLASEA  235 (253)
T ss_pred             -CCCcCHHHHHHHHHHHcCcc
Confidence             35788999999999998753

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.80  E-value=3.4e-18  Score=147.82  Aligned_cols=208  Identities=15%  Similarity=0.081  Sum_probs=146.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++++||||+|.||.+++++|+++|++|+++.|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE--LGIEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            458899999999999999999999999999998877655443322221  11468899999999998877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||....     ...+.....+++|+.+...+.+++.    +.+ ..+||++||.....  .           
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--~-----------  152 (265)
T PRK07097         87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKG-HGKIINICSMMSEL--G-----------  152 (265)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCccccC--C-----------
Confidence            48999999986542     1122334667789998887776654    334 57899999964321  0           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-------hhHHHhhhhcccCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-------PSLITALSPITRNE  217 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~~~~~~~~~  217 (338)
                               ..+...|+.+|...+.+++.+++++   |++++.++||.+..+.......       ..+.....  ... 
T Consensus       153 ---------~~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~-  220 (265)
T PRK07097        153 ---------RETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFII--AKT-  220 (265)
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHH--hcC-
Confidence                     1134589999999999999998875   8999999999998775321100       00000000  000 


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       .     ...+...+|+++++..++...
T Consensus       221 -~-----~~~~~~~~dva~~~~~l~~~~  242 (265)
T PRK07097        221 -P-----AARWGDPEDLAGPAVFLASDA  242 (265)
T ss_pred             -C-----ccCCcCHHHHHHHHHHHhCcc
Confidence             0     134778899999999999763

>PRK12742 oxidoreductase; Provisional

Probab=99.80  E-value=4.9e-18  Score=144.32  Aligned_cols=206  Identities=17%  Similarity=0.139  Sum_probs=140.9

Q ss_pred             CCCC-CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGSI-AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |+.+ +|+||||||+|.||++++++|+++|++|+++.|+. +..+.+..   .    .++..+.+|++|.+.+.++++  
T Consensus         1 m~~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~---~----~~~~~~~~D~~~~~~~~~~~~~~   73 (237)
T PRK12742          1 MGAFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQ---E----TGATAVQTDSADRDAVIDVVRKS   73 (237)
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHH---H----hCCeEEecCCCCHHHHHHHHHHh
Confidence            5543 68999999999999999999999999998877643 22222211   1    135678899999887776654  


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       ++|++||+|+.....     ..+..+..+++|+.++..++..+... ....++|++||.....  .             
T Consensus        74 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~--~-------------  138 (237)
T PRK12742         74 GALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR--M-------------  138 (237)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc--C-------------
Confidence             589999999864311     11234578889999998887655443 2146899999964321  0             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                            +..+...|+.+|.+.|.+++.++.++   |+++++++||.+..+..... .. ......   . ....     .
T Consensus       139 ------~~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~-~~-~~~~~~---~-~~~~-----~  201 (237)
T PRK12742        139 ------PVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPAN-GP-MKDMMH---S-FMAI-----K  201 (237)
T ss_pred             ------CCCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccc-cH-HHHHHH---h-cCCC-----C
Confidence                  11244589999999999999888764   79999999999976543211 11 111110   1 1111     3


Q ss_pred             ccccHHHHHHHHHHhhcCC
Q 040253          227 QFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~  245 (338)
                      .+...+|+++++.+++...
T Consensus       202 ~~~~p~~~a~~~~~l~s~~  220 (237)
T PRK12742        202 RHGRPEEVAGMVAWLAGPE  220 (237)
T ss_pred             CCCCHHHHHHHHHHHcCcc
Confidence            4678999999999998653

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.79  E-value=7.8e-18  Score=146.12  Aligned_cols=215  Identities=15%  Similarity=0.177  Sum_probs=143.9

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH----HHHHHhc-CCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK----KVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      ..+++++||||+|+||++++++|+++|++|++++|+.+...    .+..... ......++.++.+|+++++++.++++ 
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~   83 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK   83 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence            34689999999999999999999999999999999764311    1111110 11112468899999999998877664 


Q ss_pred             ------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCc
Q 040253           77 ------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 ------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                            ++|+|||+||.....     ..+..+..+++|+.++.++++++...   ....+++++||.....   .     
T Consensus        84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~---~-----  155 (273)
T PRK08278         84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD---P-----  155 (273)
T ss_pred             HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc---c-----
Confidence                  689999999864321     11223457889999999999888532   1135788888753221   0     


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAH  219 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  219 (338)
                        .          ...+...|+.+|.+.|.+++.++.++   +++++.+.|+.++...       .... .   .+....
T Consensus       156 --~----------~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~-------~~~~-~---~~~~~~  212 (273)
T PRK08278        156 --K----------WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATA-------AVRN-L---LGGDEA  212 (273)
T ss_pred             --c----------ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccH-------HHHh-c---cccccc
Confidence              0          00244589999999999999998876   7999999998432111       0000 0   011111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC--CCCceEE
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGRYIC  253 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~~~~  253 (338)
                           ...+...+|++++++.++....  ..|.+.+
T Consensus       213 -----~~~~~~p~~va~~~~~l~~~~~~~~~G~~~~  243 (273)
T PRK08278        213 -----MRRSRTPEIMADAAYEILSRPAREFTGNFLI  243 (273)
T ss_pred             -----ccccCCHHHHHHHHHHHhcCccccceeEEEe
Confidence                 1247789999999999987643  2444444

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.79  E-value=2.6e-18  Score=148.40  Aligned_cols=209  Identities=17%  Similarity=0.163  Sum_probs=144.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++++||||+|+||.+++++|+++|++|++++|+.+..+.+....     ..++.++.+|++|.+++.++++       
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   79 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTSYADNQRAVDQTVDAFG   79 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999866544433221     1357889999999988776653       


Q ss_pred             CccEEEEecccCCC--CC-CCc-------cchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 GCTGVFHLATPMDF--ES-KDP-------ENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ~~d~vi~~a~~~~~--~~-~~~-------~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                      ++|++||+||....  .. ..+       .+..+++|+.+...+++++...  ....++|++||...+.  .        
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--~--------  149 (263)
T PRK06200         80 KLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY--P--------  149 (263)
T ss_pred             CCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC--C--------
Confidence            68999999986431  10 111       3356788999988888877542  1135899999987663  1        


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCC---h-hH---HHhhhhccc
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMP---P-SL---ITALSPITR  215 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~---~-~~---~~~~~~~~~  215 (338)
                                  ..+...|+.+|.+.+.+++.++.++  +++++.+.||.+..+.......   . ..   ....... .
T Consensus       150 ------------~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~-~  216 (263)
T PRK06200        150 ------------GGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMI-A  216 (263)
T ss_pred             ------------CCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHh-h
Confidence                        1133479999999999999998875  5899999999887653211000   0 00   0000000 0


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...+.     ..+...+|+++++++++...
T Consensus       217 ~~~p~-----~r~~~~~eva~~~~fl~s~~  241 (263)
T PRK06200        217 AITPL-----QFAPQPEDHTGPYVLLASRR  241 (263)
T ss_pred             cCCCC-----CCCCCHHHHhhhhhheeccc
Confidence            00111     35788999999999998754

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.79  E-value=6.7e-18  Score=144.74  Aligned_cols=207  Identities=15%  Similarity=0.169  Sum_probs=142.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|.||.+++++|+++|++|++++|+... .....+...   ..++.++.+|++|.+++.++++       
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~-~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   82 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAP-ETQAQVEAL---GRKFHFITADLIQQKDIDSIVSQAVEVMG   82 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHH-HHHHHHHHc---CCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999998886422 111112111   2468899999999998877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.+...+.+++..    .+...++|++||...+.  ..          
T Consensus        83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--~~----------  150 (251)
T PRK12481         83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ--GG----------  150 (251)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC--CC----------
Confidence            589999999864321     1233456788999998888776543    22136899999987663  11          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                                .....|+.+|.+.+.+++.++.+   +|++++.++||.+-.+.... .... ..........   .+   
T Consensus       151 ----------~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~-~~~~-~~~~~~~~~~---~p---  212 (251)
T PRK12481        151 ----------IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAA-LRAD-TARNEAILER---IP---  212 (251)
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhh-cccC-hHHHHHHHhc---CC---
Confidence                      12337999999999999988875   48999999999886553211 0000 0000000011   11   


Q ss_pred             CCccccHHHHHHHHHHhhcC
Q 040253          225 QGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~  244 (338)
                      ..++...+|+++++.+++..
T Consensus       213 ~~~~~~peeva~~~~~L~s~  232 (251)
T PRK12481        213 ASRWGTPDDLAGPAIFLSSS  232 (251)
T ss_pred             CCCCcCHHHHHHHHHHHhCc
Confidence            13478899999999999864

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.79  E-value=6.1e-18  Score=150.04  Aligned_cols=205  Identities=15%  Similarity=0.115  Sum_probs=145.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~   76 (338)
                      .+++|+||||+|.||.+++++|+++|++|++++|+.+...........  ....+.++.+|++|.+++.+++       .
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~--~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA--LGAEVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999999999999987655444332211  1246788999999999888766       3


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++.+++    ++.+ ..++|++||...+.  .           
T Consensus        84 ~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS~~~~~--~-----------  149 (330)
T PRK06139         84 RIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMISLGGFA--A-----------  149 (330)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcChhhcC--C-----------
Confidence            689999999854321     11223457899999998877665    3334 46899999976553  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               .+....|+.+|.....+.+.++.+.    +++++.+.||.+..+.......         ..+...    .
T Consensus       150 ---------~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~---------~~~~~~----~  207 (330)
T PRK06139        150 ---------QPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN---------YTGRRL----T  207 (330)
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc---------cccccc----c
Confidence                     1123589999999888887777653    7999999999998775321100         001000    0


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ........+|+|++++.+++++.
T Consensus       208 ~~~~~~~pe~vA~~il~~~~~~~  230 (330)
T PRK06139        208 PPPPVYDPRRVAKAVVRLADRPR  230 (330)
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCC
Confidence            01236789999999999998754

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.79  E-value=1.9e-18  Score=149.14  Aligned_cols=212  Identities=17%  Similarity=0.210  Sum_probs=145.2

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+++++||||+|+||.+++++|++.|++|++++|+.+..+.+....     ..++..+.+|+.|.+++.++++    
T Consensus         1 m~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   75 (262)
T TIGR03325         1 MRLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH-----GDAVVGVEGDVRSLDDHKEAVARCVA   75 (262)
T ss_pred             CCcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc-----CCceEEEEeccCCHHHHHHHHHHHHH
Confidence            6656799999999999999999999999999999999765544432211     1467889999999887766553    


Q ss_pred             ---CccEEEEecccCCC--C----CC----CccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCC
Q 040253           77 ---GCTGVFHLATPMDF--E----SK----DPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~--~----~~----~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                         ++|++||+||....  .    ..    +..+..+++|+.++..+++++...-  ...++|++||...+.  .     
T Consensus        76 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~--~-----  148 (262)
T TIGR03325        76 AFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFY--P-----  148 (262)
T ss_pred             HhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceec--C-----
Confidence               68999999985321  0    00    1234678999999999988885431  125788888865542  1     


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCC-C--ChhHH-Hh-hhhcc
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSS-M--PPSLI-TA-LSPIT  214 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~-~--~~~~~-~~-~~~~~  214 (338)
                                     ......|+.+|...+.+++.++.++  +++++.+.||.+..+..... .  ..... .. .....
T Consensus       149 ---------------~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~  213 (262)
T TIGR03325       149 ---------------NGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDML  213 (262)
T ss_pred             ---------------CCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhh
Confidence                           0123479999999999999999886  48999999999876532210 0  00000 00 00000


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      ...  .+   ..++...+|++++++.++..
T Consensus       214 ~~~--~p---~~r~~~p~eva~~~~~l~s~  238 (262)
T TIGR03325       214 KSV--LP---IGRMPDAEEYTGAYVFFATR  238 (262)
T ss_pred             hhc--CC---CCCCCChHHhhhheeeeecC
Confidence            000  11   14577899999999998865

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.79  E-value=1.2e-17  Score=143.32  Aligned_cols=208  Identities=16%  Similarity=0.151  Sum_probs=144.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++++||||+|.||.+++++|++.|++|++++|+.. .+..+.+...   ..++..+.+|++|.+++.++++       
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~-~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP-TETIEQVTAL---GRRFLSLTADLRKIDGIPALLERAVAEFG   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch-HHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            3689999999999999999999999999998877542 2222333222   1467889999999888877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++..+++++...    ++..++|++||...+.  ..          
T Consensus        85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--~~----------  152 (253)
T PRK08993         85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQ--GG----------  152 (253)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhcc--CC----------
Confidence            589999999864321     12345578899999999888876432    2135899999987664  11          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                                .....|+.+|.+.+.+.+.++.+.   |++++.++||.+-.+......... .. .......   .+   
T Consensus       153 ----------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~-~~-~~~~~~~---~p---  214 (253)
T PRK08993        153 ----------IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADE-QR-SAEILDR---IP---  214 (253)
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccch-HH-HHHHHhc---CC---
Confidence                      122379999999999999888774   899999999999765321110000 00 0000011   11   


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...+...+|++++++.++...
T Consensus       215 ~~r~~~p~eva~~~~~l~s~~  235 (253)
T PRK08993        215 AGRWGLPSDLMGPVVFLASSA  235 (253)
T ss_pred             CCCCcCHHHHHHHHHHHhCcc
Confidence            134778899999999999754

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.79  E-value=4.7e-18  Score=144.55  Aligned_cols=206  Identities=17%  Similarity=0.167  Sum_probs=143.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+++|+||||+|+||+++++.|++.|++|++++|+++....+......   ..+++++.+|+++.+++.++++    
T Consensus         1 ~~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~   77 (238)
T PRK05786          1 MRLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK---YGNIHYVVGDVSSTESARNVIEKAAK   77 (238)
T ss_pred             CCcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEECCCCCHHHHHHHHHHHHH
Confidence            555678999999999999999999999999999999987654443221111   1367899999999988876553    


Q ss_pred             ---CccEEEEecccCCCCCC---CccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 ---GCTGVFHLATPMDFESK---DPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                         ++|.+||+++.......   +.....++.|+.+...+++.+... ....++|++||.....  .             
T Consensus        78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~--~-------------  142 (238)
T PRK05786         78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIY--K-------------  142 (238)
T ss_pred             HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcc--c-------------
Confidence               47999999985432111   122345788888887777766543 1125799999864421  0             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                            +..+...|+.+|...+.+++.++.++   +++++++||+.++++....    ...   .   ... ..    ..
T Consensus       143 ------~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~----~~~---~---~~~-~~----~~  201 (238)
T PRK05786        143 ------ASPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE----RNW---K---KLR-KL----GD  201 (238)
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch----hhh---h---hhc-cc----cC
Confidence                  01134479999999999888888764   8999999999999874211    000   0   000 00    02


Q ss_pred             ccccHHHHHHHHHHhhcCC
Q 040253          227 QFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..+..+|+++++..++..+
T Consensus       202 ~~~~~~~va~~~~~~~~~~  220 (238)
T PRK05786        202 DMAPPEDFAKVIIWLLTDE  220 (238)
T ss_pred             CCCCHHHHHHHHHHHhccc
Confidence            3678899999999999753

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.79  E-value=1e-17  Score=143.22  Aligned_cols=205  Identities=14%  Similarity=0.146  Sum_probs=138.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC-CCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+++||||+|+||++++++|+++|++|++..+. ...... ...+.   ....++..+.+|+.|.+++.++++      
T Consensus         3 ~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          3 QRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQK---ALGFDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999998876543 222211 12211   112457788999999988877653      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+|+.....     ..+..+..++.|+.++..+.+++    .+.+ ..++|++||.....             
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~-------------  145 (246)
T PRK12938         80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQK-------------  145 (246)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEEechhccC-------------
Confidence             689999999864321     11233567889999977766554    3444 57899999864431             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +..+...|+.+|.+.+.+++.++++   .|+++++++||.+.++.........+..    ..+. ...   
T Consensus       146 ---------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~----~~~~-~~~---  208 (246)
T PRK12938        146 ---------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEK----IVAT-IPV---  208 (246)
T ss_pred             ---------CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhhcChHHHHH----HHhc-CCc---
Confidence                     1113458999999999888887765   3899999999999876532211111110    1111 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ..+...+|+++++..++...
T Consensus       209 --~~~~~~~~v~~~~~~l~~~~  228 (246)
T PRK12938        209 --RRLGSPDEIGSIVAWLASEE  228 (246)
T ss_pred             --cCCcCHHHHHHHHHHHcCcc
Confidence              34678999999999988653

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.78  E-value=6.3e-18  Score=144.95  Aligned_cols=213  Identities=16%  Similarity=0.172  Sum_probs=138.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG-------   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-------   77 (338)
                      ||+|+||||+|+||++++++|+++|++|++++|++.+  .+..+....  ..+++++.+|++|.+++.++++.       
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~--~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENK--ELTKLAEQY--NSNLTFHSLDLQDVHELETNFNEILSSIQE   76 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchH--HHHHHHhcc--CCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence            4799999999999999999999999999999997632  122222111  24788999999999988877642       


Q ss_pred             --c--cEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           78 --C--TGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        78 --~--d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                        .  .++||+||....      ...+.....+++|+.+...+.+.+    +..+..+++|++||..++.          
T Consensus        77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------  146 (251)
T PRK06924         77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKN----------  146 (251)
T ss_pred             ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcC----------
Confidence              1  278999985421      111223356777888766555544    3322146899999975542          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCceeCCCCCCC---CChhHHHhhhhccc
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE-----NNIDFISIIPSLVVGPFLTSS---MPPSLITALSPITR  215 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~  215 (338)
                                  +..+...|+.+|.+.+.+++.++.+     .+++++.++||.+-.+.....   ....... ......
T Consensus       147 ------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~-~~~~~~  213 (251)
T PRK06924        147 ------------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTN-LDRFIT  213 (251)
T ss_pred             ------------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchH-HHHHHH
Confidence                        1124568999999999999988866     369999999998765431100   0000000 000000


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcC-CCCCCc
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEH-PNAKGR  250 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~-~~~~~~  250 (338)
                      .   .+   ...+...+|+|++++.++.. ....|.
T Consensus       214 ~---~~---~~~~~~~~dva~~~~~l~~~~~~~~G~  243 (251)
T PRK06924        214 L---KE---EGKLLSPEYVAKALRNLLETEDFPNGE  243 (251)
T ss_pred             H---hh---cCCcCCHHHHHHHHHHHHhcccCCCCC
Confidence            0   00   12478999999999999986 333443

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.78  E-value=2e-17  Score=141.93  Aligned_cols=210  Identities=16%  Similarity=0.108  Sum_probs=142.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|.||++++++|+++|++|++++|+.............  ...++.++.+|++|++++.++++       +
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ--FPGQVLTVQMDVRNPEDVQKMVEQIDEKFGR   78 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999986654443322211  11468899999999988877553       5


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||.....     ..+..+..++.|+.++.++++++..    .+...++|++||...+.  ..           
T Consensus        79 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~--~~-----------  145 (252)
T PRK07677         79 IDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD--AG-----------  145 (252)
T ss_pred             ccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc--CC-----------
Confidence            89999999853211     1122346789999999999888743    22136899999874432  10           


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               .....|+.+|.+.+.+.+.++.++    |++++.++||.+.++.........- ......... ..+    
T Consensus       146 ---------~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~-~~~~~~~~~-~~~----  210 (252)
T PRK07677        146 ---------PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESE-EAAKRTIQS-VPL----  210 (252)
T ss_pred             ---------CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCH-HHHHHHhcc-CCC----
Confidence                     123379999999999999877763    7999999999987543111100000 000000011 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ..+...+|+++++..++...
T Consensus       211 -~~~~~~~~va~~~~~l~~~~  230 (252)
T PRK07677        211 -GRLGTPEEIAGLAYFLLSDE  230 (252)
T ss_pred             -CCCCCHHHHHHHHHHHcCcc
Confidence             34778899999999888653

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.5e-17  Score=143.52  Aligned_cols=211  Identities=16%  Similarity=0.141  Sum_probs=143.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~   77 (338)
                      .+|++|||||+|.||.+++++|+++|++|++++|+.+............ ...++..+.+|++|.+++.++++      +
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSE-SNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4689999999999999999999999999999999866544433221111 12468899999999988877664      5


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||....     ...+..+..+++|+.+...+.++    +++.+ ..++|++||...+.  .            
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~~~~~--~------------  150 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSVAIKE--P------------  150 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCccccC--C------------
Confidence            8999999985431     11233456778887776665544    44444 57899999976542  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-------hhHHHhhhhcccCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-------PSLITALSPITRNEA  218 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~~~~~~~~~~  218 (338)
                              ......|+.+|.+.+.+.+.++.++   |++++.+.||.+..+.......       .......... ....
T Consensus       151 --------~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  221 (263)
T PRK08339        151 --------IPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEY-AKPI  221 (263)
T ss_pred             --------CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHH-hccC
Confidence                    0123479999999999999988875   7999999999886542110000       0000000000 0111


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      +     ..++...+|+++++..++..
T Consensus       222 p-----~~r~~~p~dva~~v~fL~s~  242 (263)
T PRK08339        222 P-----LGRLGEPEEIGYLVAFLASD  242 (263)
T ss_pred             C-----cccCcCHHHHHHHHHHHhcc
Confidence            1     13578899999999999865

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.8e-17  Score=141.03  Aligned_cols=202  Identities=17%  Similarity=0.122  Sum_probs=139.4

Q ss_pred             CCCC-CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC--CCchhhh--
Q 040253            1 MGSI-AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE--GNFDEPI--   75 (338)
Q Consensus         1 m~~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~--   75 (338)
                      |..+ +++|+||||+|+||.+++++|+++|++|++++|+.+..+......... ..+.+..+.+|+.+.  +++.+++  
T Consensus         1 ~~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~   79 (239)
T PRK08703          1 MATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA-GHPEPFAIRFDLMSAEEKEFEQFAAT   79 (239)
T ss_pred             CCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc-CCCCcceEEeeecccchHHHHHHHHH
Confidence            4443 589999999999999999999999999999999876554443221111 113467788999763  3333332  


Q ss_pred             ------CCccEEEEecccCCC-C--CC---CccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCC
Q 040253           76 ------RGCTGVFHLATPMDF-E--SK---DPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        76 ------~~~d~vi~~a~~~~~-~--~~---~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~  139 (338)
                            .++|+|||+||.... .  ..   +.....+++|+.++..+++++..    .+ ..+++++||.....      
T Consensus        80 i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~ss~~~~~------  152 (239)
T PRK08703         80 IAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSP-DASVIFVGESHGET------  152 (239)
T ss_pred             HHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC-CCEEEEEecccccc------
Confidence                  368999999985321 1  11   12234678999998888777643    33 46899999854321      


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc----CccEEEEcCCceeCCCCCCCCChhHHHhhhhccc
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITR  215 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  215 (338)
                                      +......|+.+|...+.+++.++.+.    ++++++++||.+.++.......           +
T Consensus       153 ----------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~~-----------~  205 (239)
T PRK08703        153 ----------------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSHP-----------G  205 (239)
T ss_pred             ----------------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccCC-----------C
Confidence                            11123479999999999999988875    5999999999999875321100           0


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .       ....+...+|++..+..++..
T Consensus       206 ~-------~~~~~~~~~~~~~~~~~~~~~  227 (239)
T PRK08703        206 E-------AKSERKSYGDVLPAFVWWASA  227 (239)
T ss_pred             C-------CccccCCHHHHHHHHHHHhCc
Confidence            0       002356899999999999873

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.78  E-value=2.3e-17  Score=140.17  Aligned_cols=205  Identities=16%  Similarity=0.125  Sum_probs=139.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      |+|++|||||+|.||.+++++|+++|++|++++|+++...  +.+..     .++.++.+|+.|.+++.++++       
T Consensus         1 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~   73 (236)
T PRK06483          1 MPAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI--DGLRQ-----AGAQCIQADFSTNAGIMAFIDELKQHTD   73 (236)
T ss_pred             CCceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH--HHHHH-----cCCEEEEcCCCCHHHHHHHHHHHHhhCC
Confidence            3679999999999999999999999999999999765321  22211     246789999999988776553       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CC-CccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AK-TVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|++||+||.....     ..+..+..+++|+.+...+.+.+..    .+ ...++|++||.....             
T Consensus        74 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~-------------  140 (236)
T PRK06483         74 GLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK-------------  140 (236)
T ss_pred             CccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc-------------
Confidence            589999999854311     1223456788899988776665543    21 135799999864331             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               +......|+.+|...+.+++.++.++  +++++++.||.+.-+...   ........   ... ...    
T Consensus       141 ---------~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~---~~~~~~~~---~~~-~~~----  200 (236)
T PRK06483        141 ---------GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGD---DAAYRQKA---LAK-SLL----  200 (236)
T ss_pred             ---------CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCC---CHHHHHHH---hcc-Ccc----
Confidence                     01123479999999999999999886  599999999988532211   11111100   011 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCCCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNAKG  249 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~~~  249 (338)
                       ..+...+|+++++.+++......|
T Consensus       201 -~~~~~~~~va~~~~~l~~~~~~~G  224 (236)
T PRK06483        201 -KIEPGEEEIIDLVDYLLTSCYVTG  224 (236)
T ss_pred             -ccCCCHHHHHHHHHHHhcCCCcCC
Confidence             235678999999999997443344

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.78  E-value=1.4e-17  Score=146.25  Aligned_cols=208  Identities=18%  Similarity=0.087  Sum_probs=145.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +++++||||+|.||.+++++|.++|++|++++|+.+....+......   ...+..+.+|++|.+++.++++       +
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERFGG   85 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999987655444332211   1356677799999988776653       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      +|+|||+||.....     ..+..+..+++|+.++.++++++...-  ...++|++||...+.  .              
T Consensus        86 id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~--~--------------  149 (296)
T PRK05872         86 IDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA--A--------------  149 (296)
T ss_pred             CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC--C--------------
Confidence            89999999964321     112234678899999999988875321  135899999976663  1              


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCCh--hHHHhhhhcccCCCCCCCCCC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPP--SLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  225 (338)
                            ......|+.+|...+.+.+.++.+   .|+.++++.||.+..+........  ......   ...+...     
T Consensus       150 ------~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~---~~~~~p~-----  215 (296)
T PRK05872        150 ------APGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELR---ARLPWPL-----  215 (296)
T ss_pred             ------CCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHH---hhCCCcc-----
Confidence                  113458999999999999888765   489999999998876542211111  111000   0111111     


Q ss_pred             CccccHHHHHHHHHHhhcCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..++..+|+++++..++...
T Consensus       216 ~~~~~~~~va~~i~~~~~~~  235 (296)
T PRK05872        216 RRTTSVEKCAAAFVDGIERR  235 (296)
T ss_pred             cCCCCHHHHHHHHHHHHhcC
Confidence            35788999999999999864

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.78  E-value=8.9e-18  Score=162.09  Aligned_cols=229  Identities=18%  Similarity=0.150  Sum_probs=146.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+||||||+|+||++++++|+++|++|++++|+.+.................+..+.+|++|.+++.++++       +
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~  493 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGG  493 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999999999999999876544432221111111357789999999998887765       6


Q ss_pred             ccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||......     .+.....+++|+.+...+...+    +..+...++|++||...+.  .            
T Consensus       494 iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~--~------------  559 (676)
T TIGR02632       494 VDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY--A------------  559 (676)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC--C------------
Confidence            899999998643211     1123456677888776665433    3333135899999975543  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCcee-CCCCCCCCChhHHHhhhhcccC--CCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVV-GPFLTSSMPPSLITALSPITRN--EAHYPI  222 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~~~~--~~~~~~  222 (338)
                              ......|+.+|.+.+.+++.++.+.   |++++.++|+.++ |.+...................  ...+..
T Consensus       560 --------~~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  631 (676)
T TIGR02632       560 --------GKNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREERAAAYGIPADELEEHYAK  631 (676)
T ss_pred             --------CCCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhhhhhcccCChHHHHHHHHh
Confidence                    1134589999999999999988874   7999999999887 4322111000000000000000  000000


Q ss_pred             CC-CCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          223 IK-QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       223 ~~-~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      .. ...+++.+|+|+++..++....  ..| .+++.+
T Consensus       632 r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDG  668 (676)
T TIGR02632       632 RTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDG  668 (676)
T ss_pred             cCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECC
Confidence            00 1457899999999999886432  234 456644

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.78  E-value=2.5e-17  Score=142.39  Aligned_cols=212  Identities=17%  Similarity=0.126  Sum_probs=141.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      .++++||||+|.||.+++++|+++|++|++++|+.++...............++..+.+|++|.+++.++++       +
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGG   87 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            589999999999999999999999999999999876654443322211111367889999999988776553       5


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||.....     ..+.....++.|+.+...+.+++    ++.+ ..++|++||...+.  .            
T Consensus        88 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~------------  152 (265)
T PRK07062         88 VDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNSLLALQ--P------------  152 (265)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEeccccccC--C------------
Confidence            89999999864311     11223456777877776666554    3344 46899999976553  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC------hhHHHhhhhc-ccCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP------PSLITALSPI-TRNEA  218 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~------~~~~~~~~~~-~~~~~  218 (338)
                              ......|+.+|.+.+.+.+.++.+.   |++++.+.||.+..+.....+.      .......... .....
T Consensus       153 --------~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (265)
T PRK07062        153 --------EPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGI  224 (265)
T ss_pred             --------CCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCC
Confidence                    1123479999999998888877764   8999999999886653211000      0000000000 00001


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      ..     .++...+|++++++.++..
T Consensus       225 p~-----~r~~~p~~va~~~~~L~s~  245 (265)
T PRK07062        225 PL-----GRLGRPDEAARALFFLASP  245 (265)
T ss_pred             Cc-----CCCCCHHHHHHHHHHHhCc
Confidence            11     3577899999999998864

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.77  E-value=5.5e-17  Score=139.96  Aligned_cols=209  Identities=16%  Similarity=0.088  Sum_probs=140.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHH-HHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVK-HLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+++++||||+|.||.+++++|+++|++|+++.|+... ..... .+...   ..++.++.+|++|.+++.++++     
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~   82 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKA---GGEAIAVKGDVTVESDVVNLIQTAVKE   82 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc---CCeEEEEEecCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999888885432 22222 12111   2467889999999988777653     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHH----HHHhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMR----ACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|++||+|+.....     ..+..+..+++|+.+...+.+    .+.+.+...++|++||...+.            
T Consensus        83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~------------  150 (261)
T PRK08936         83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI------------  150 (261)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC------------
Confidence              589999999864321     112234567889887765544    444443236899999964432            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +.++...|+.+|.+.+.+.+.++.++   |+++++++||.+..+...........  ....... ...  
T Consensus       151 ----------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~--~~~~~~~-~~~--  215 (261)
T PRK08936        151 ----------PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQ--RADVESM-IPM--  215 (261)
T ss_pred             ----------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHH--HHHHHhc-CCC--
Confidence                      11244589999999888888877665   89999999999987753322111110  0000011 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         ..+...+|+++++.+++...
T Consensus       216 ---~~~~~~~~va~~~~~l~s~~  235 (261)
T PRK08936        216 ---GYIGKPEEIAAVAAWLASSE  235 (261)
T ss_pred             ---CCCcCHHHHHHHHHHHcCcc
Confidence               34778899999999998753

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.77  E-value=3.5e-17  Score=139.49  Aligned_cols=205  Identities=15%  Similarity=0.165  Sum_probs=137.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      |++|||||+|+||++++++|+++|++|+++.| ++............  ...++.++.+|++|++++.++++       +
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGA--LGFDFRVVEGDVSSFESCKAAVAKVEAELGP   78 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--hCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999988 33222221111111  11468899999999888776653       5


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+++....     ...+.....++.|+.++..+++.+    +..+ .+++|++||.....  ..           
T Consensus        79 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~iss~~~~~--~~-----------  144 (242)
T TIGR01829        79 IDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERG-WGRIINISSVNGQK--GQ-----------  144 (242)
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcC--CC-----------
Confidence            8999999986431     111233456788999877755544    4455 67999999864332  10           


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                               .....|+.+|...+.+++.++++.   +++++.++|+.+.++............ ..   .. ...     
T Consensus       145 ---------~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~-~~---~~-~~~-----  205 (242)
T TIGR01829       145 ---------FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMAMREDVLNS-IV---AQ-IPV-----  205 (242)
T ss_pred             ---------CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccccchHHHHH-HH---hc-CCC-----
Confidence                     123479999999998888877654   899999999999877533211111111 11   11 111     


Q ss_pred             CccccHHHHHHHHHHhhcCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..+...+|+++++.+++..+
T Consensus       206 ~~~~~~~~~a~~~~~l~~~~  225 (242)
T TIGR01829       206 GRLGRPEEIAAAVAFLASEE  225 (242)
T ss_pred             CCCcCHHHHHHHHHHHcCch
Confidence            23567799999998887653

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR02415 23BDH acetoin reductases

Probab=99.77  E-value=5.9e-18  Score=145.39  Aligned_cols=218  Identities=17%  Similarity=0.211  Sum_probs=144.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |+++||||+|+||.+++++|++.|++|+++.|+............  ....++.++.+|++|++++.+++.       .+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i   78 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEIN--QAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF   78 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            589999999999999999999999999999997554333322111  112468899999999998877653       57


Q ss_pred             cEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |+|||+|+.....     ..+..+..++.|+.++..+++++.    ..+...++|++||.....  ..            
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--~~------------  144 (254)
T TIGR02415        79 DVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHE--GN------------  144 (254)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcC--CC------------
Confidence            9999999864321     112234678899998887766553    333236899999865442  10            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC-----CCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA-----HYP  221 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-----~~~  221 (338)
                              +....|+.+|.+.+.+++.++.++   ++++++++||.+..+....     +........+...     .+.
T Consensus       145 --------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~~-----~~~~~~~~~~~~~~~~~~~~~  211 (254)
T TIGR02415       145 --------PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWEE-----IDEETSEIAGKPIGEGFEEFS  211 (254)
T ss_pred             --------CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhhh-----hhhhhhhcccCchHHHHHHHH
Confidence                    124579999999999999887775   7999999999886553211     0000000000000     000


Q ss_pred             -CCCCCccccHHHHHHHHHHhhcCCCC--CCceE
Q 040253          222 -IIKQGQFVHLDDLCSAHIFLFEHPNA--KGRYI  252 (338)
Q Consensus       222 -~~~~~~~i~v~D~a~~~~~~l~~~~~--~~~~~  252 (338)
                       ......+...+|+++++..++.....  .|.++
T Consensus       212 ~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~  245 (254)
T TIGR02415       212 SEIALGRPSEPEDVAGLVSFLASEDSDYITGQSI  245 (254)
T ss_pred             hhCCCCCCCCHHHHHHHHHhhcccccCCccCcEE
Confidence             00013478899999999999987543  35444

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.77  E-value=3.4e-18  Score=145.89  Aligned_cols=162  Identities=19%  Similarity=0.181  Sum_probs=120.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--------   76 (338)
                      ||+|+||||+|+||++++++|+++|++|++++|+.....  .   ..  ...++.++.+|+.|.+++.+++.        
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~--~---~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   73 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL--A---AA--AGERLAEVELDLSDAAAAAAWLAGDLLAAFV   73 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh--h---hc--cCCeEEEEEeccCCHHHHHHHHHHHHHHHhc
Confidence            469999999999999999999999999999999765321  1   10  11468899999999988777331        


Q ss_pred             ---CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ---GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                         ++|++||+|+.....      ..+..+..++.|+.+...+.+.+.    ..+ .+++|++||...+.          
T Consensus        74 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~----------  142 (243)
T PRK07023         74 DGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAA-ERRILHISSGAARN----------  142 (243)
T ss_pred             cCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccC-CCEEEEEeChhhcC----------
Confidence               478999999864321      112234678889999766655543    333 56999999976653          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH--cCccEEEEcCCceeCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE--NNIDFISIIPSLVVGP  196 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~  196 (338)
                                  +..+...|+.+|...|.+++.++.+  .++++++++||.+-.+
T Consensus       143 ------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~  185 (243)
T PRK07023        143 ------------AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG  185 (243)
T ss_pred             ------------CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence                        1124558999999999999988865  4899999999987543

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.77  E-value=1.9e-17  Score=141.61  Aligned_cols=200  Identities=21%  Similarity=0.213  Sum_probs=138.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccC--CCCCchhh-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA--EEGNFDEP-------   74 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~--d~~~~~~~-------   74 (338)
                      ..++|+||||+|+||.+++++|++.|++|++++|+.+............ ...++.++.+|++  +.+++.++       
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA-GGPQPAIIPLDLLTATPQNYQQLADTIEEQ   89 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEecccCCCHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999876544432221111 1135677788886  34443333       


Q ss_pred             hCCccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           75 IRGCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        75 ~~~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                      +.++|+|||+|+....      ...+.....++.|+.++.++++++.    +.+ ..+||++||.....  .        
T Consensus        90 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~-~~~iv~~ss~~~~~--~--------  158 (247)
T PRK08945         90 FGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSP-AASLVFTSSSVGRQ--G--------  158 (247)
T ss_pred             hCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEEccHhhcC--C--------
Confidence            3468999999986421      1122345678899999888887764    344 67999999975442  1        


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  ......|+.+|.+++.+++.++.++   ++++++++|+.+-++......            ...    
T Consensus       159 ------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~~~------------~~~----  210 (247)
T PRK08945        159 ------------RANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRASAF------------PGE----  210 (247)
T ss_pred             ------------CCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhhhc------------Ccc----
Confidence                        0133479999999999999888776   688999999877554211000            000    


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                        ....+...+|+++++.+++...
T Consensus       211 --~~~~~~~~~~~~~~~~~~~~~~  232 (247)
T PRK08945        211 --DPQKLKTPEDIMPLYLYLMGDD  232 (247)
T ss_pred             --cccCCCCHHHHHHHHHHHhCcc
Confidence              0124678899999999988643

>PRK06484 short chain dehydrogenase; Validated

Probab=99.77  E-value=1.6e-17  Score=157.40  Aligned_cols=219  Identities=18%  Similarity=0.184  Sum_probs=152.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|.||.+++++|+++|++|++++|+.+..+.+.....     .++..+.+|++|++++.++++       
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g  342 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG  342 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999999999999998655544432211     356778999999988877664       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      .+|++||+||....      ...+..+..+++|+.++.++.+++...- ...++|++||...+.                
T Consensus       343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  406 (520)
T PRK06484        343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL----------------  406 (520)
T ss_pred             CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC----------------
Confidence            58999999986421      1112345678999999999988776531 136899999976653                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                            +..+...|+.+|...+.+++.++.++   |++++++.||.+..+.........-. ....... ....     .
T Consensus       407 ------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~-~~~~~~~-~~~~-----~  473 (520)
T PRK06484        407 ------ALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRA-DFDSIRR-RIPL-----G  473 (520)
T ss_pred             ------CCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHH-HHHHHHh-cCCC-----C
Confidence                  11134589999999999999988775   79999999999977642211000000 0000001 1111     2


Q ss_pred             ccccHHHHHHHHHHhhcCCC--CCC-ceEEecC
Q 040253          227 QFVHLDDLCSAHIFLFEHPN--AKG-RYICSSH  256 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~~  256 (338)
                      .+...+|+|+++++++....  ..| .+.+.+.
T Consensus       474 ~~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg  506 (520)
T PRK06484        474 RLGDPEEVAEAIAFLASPAASYVNGATLTVDGG  506 (520)
T ss_pred             CCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence            46789999999999987532  234 4455433

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.77  E-value=7.9e-18  Score=145.63  Aligned_cols=205  Identities=16%  Similarity=0.189  Sum_probs=141.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|+||.+++++|+++|++|++++|+......           .++..+.+|++|++++.++++       
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~~~~~~g   76 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQH-----------ENYQFVPTDVSSAEEVNHTVAEIIEKFG   76 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccccc-----------CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999987654321           367889999999988877654       


Q ss_pred             CccEEEEecccCCCC--------------CCCccchhhhhhhHHHHHHHHHHHhCC---CccEEEEecCceeeeccCCCC
Q 040253           77 GCTGVFHLATPMDFE--------------SKDPENEVIRPTINGMVSIMRACKNAK---TVRRLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~--------------~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~  139 (338)
                      .+|+|||+||.....              ..+..+..++.|+.++..+++++...-   ...++|++||...+.  .   
T Consensus        77 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~--~---  151 (266)
T PRK06171         77 RIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE--G---  151 (266)
T ss_pred             CCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC--C---
Confidence            589999999853211              112234578899999999988876431   135899999976553  1   


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeC-CCCCCCCChhH--------H
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVG-PFLTSSMPPSL--------I  207 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G-~~~~~~~~~~~--------~  207 (338)
                                       ......|+.+|...+.+++.++.++   |+++++++||.+-. +.........+        .
T Consensus       152 -----------------~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~  214 (266)
T PRK06171        152 -----------------SEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVE  214 (266)
T ss_pred             -----------------CCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHH
Confidence                             1134589999999999999988764   89999999998742 21110000000        0


Q ss_pred             HhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          208 TALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .......... ..+   ..++...+|+|+++.+++...
T Consensus       215 ~~~~~~~~~~-~~p---~~r~~~~~eva~~~~fl~s~~  248 (266)
T PRK06171        215 QLRAGYTKTS-TIP---LGRSGKLSEVADLVCYLLSDR  248 (266)
T ss_pred             HHHhhhcccc-ccc---CCCCCCHHHhhhheeeeeccc
Confidence            0000000000 011   135778899999999998753

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.76  E-value=3.4e-17  Score=141.07  Aligned_cols=208  Identities=17%  Similarity=0.093  Sum_probs=137.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |+++||||+|.||++++++|+++|++|++++|+++...+........   .++.++.+|++|.+++.++++       ++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i   77 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGI   77 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999999999876544432221111   357889999999988877653       68


Q ss_pred             cEEEEecccCCC----CCCC---ccchhhhhhhHHHHHHHHH----HH-hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           79 TGVFHLATPMDF----ESKD---PENEVIRPTINGMVSIMRA----CK-NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        79 d~vi~~a~~~~~----~~~~---~~~~~~~~n~~~~~~l~~~----~~-~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      |++||+||....    ....   .....+..|+.+...+...    +. ..+ ..++|++||.....             
T Consensus        78 d~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-~g~iv~isS~~~~~-------------  143 (259)
T PRK08340         78 DALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKM-KGVLVYLSSVSVKE-------------  143 (259)
T ss_pred             CEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCC-CCEEEEEeCcccCC-------------
Confidence            999999986421    1111   1223355666665444332    32 223 46899999976542             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh-------hHHH-hhhhccc
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP-------SLIT-ALSPITR  215 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-------~~~~-~~~~~~~  215 (338)
                               +..+...|+.+|...+.+.+.++.++   |++++.+.||.+-.+........       .... .......
T Consensus       144 ---------~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (259)
T PRK08340        144 ---------PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLE  214 (259)
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhc
Confidence                     11134589999999999999999876   79999999998865532110000       0000 0000000


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .   .+   ..++...+|+|+++++++...
T Consensus       215 ~---~p---~~r~~~p~dva~~~~fL~s~~  238 (259)
T PRK08340        215 R---TP---LKRTGRWEELGSLIAFLLSEN  238 (259)
T ss_pred             c---CC---ccCCCCHHHHHHHHHHHcCcc
Confidence            0   01   135788999999999998754

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.76  E-value=8.3e-17  Score=138.94  Aligned_cols=210  Identities=20%  Similarity=0.152  Sum_probs=143.9

Q ss_pred             CcEEEEeCCch-hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASG-FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +++++||||+| -||.++++.|+++|++|++++|+....+.............++..+.+|+++.+++.++++       
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   96 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLG   96 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            58999999998 5999999999999999999998766544332211110111368889999999988776653       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+.....++.|+.+...+++++..    .+...++|++||...+.              
T Consensus        97 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~--------------  162 (262)
T PRK07831         97 RLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWR--------------  162 (262)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC--------------
Confidence            589999999854311     1122345677899999888777643    21135788888864432              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+++.++.+   +|+++++++||.+..+..............   ... ..+    
T Consensus       163 --------~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~---~~~-~~~----  226 (262)
T PRK07831        163 --------AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVTSAELLDEL---AAR-EAF----  226 (262)
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccccCHHHHHHH---Hhc-CCC----
Confidence                    1113447999999999999999877   489999999999987753221111111111   111 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ..+...+|+++++++++...
T Consensus       227 -~r~~~p~~va~~~~~l~s~~  246 (262)
T PRK07831        227 -GRAAEPWEVANVIAFLASDY  246 (262)
T ss_pred             -CCCcCHHHHHHHHHHHcCch
Confidence             35778899999999988754

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.7e-17  Score=146.67  Aligned_cols=181  Identities=17%  Similarity=0.030  Sum_probs=129.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+++++||||+|.||.+++++|+++|++|++++|+.++...... +... ....++.++.+|+.|.+++.++++      
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~-~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA-VPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            36899999999999999999999999999999998765443322 2211 112368899999999988876653      


Q ss_pred             -CccEEEEecccCCC----CCCCccchhhhhhhHHHHHHHHHHHh---CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMDF----ESKDPENEVIRPTINGMVSIMRACKN---AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|++||+||....    ...+..+..+.+|+.+...+.+.+..   .+ ..++|++||...+.. ......+.+..  
T Consensus        92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~riv~vsS~~~~~~-~~~~~~~~~~~--  167 (313)
T PRK05854         92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RARVTSQSSIAARRG-AINWDDLNWER--  167 (313)
T ss_pred             CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCeEEEechhhcCC-CcCcccccccc--
Confidence             58999999986542    12244556789999998777666542   22 358999999765431 11111111111  


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCceeCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE-----NNIDFISIIPSLVVGP  196 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~  196 (338)
                             ...+...|+.||.+.+.+.++++++     .|+.++++.||.+..+
T Consensus       168 -------~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~  213 (313)
T PRK05854        168 -------SYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN  213 (313)
T ss_pred             -------cCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence                   1234568999999999999998864     3799999999988654

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.76  E-value=6.7e-17  Score=138.59  Aligned_cols=210  Identities=15%  Similarity=0.121  Sum_probs=143.2

Q ss_pred             CCC--CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC
Q 040253            1 MGS--IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         1 m~~--~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      |+.  .+|+++||||+  +-||..++++|++.|++|++.+|+.+.....+.+.     ..++..+.+|++|++++.++++
T Consensus         1 ~~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~   75 (252)
T PRK06079          1 MSGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-----DEEDLLVECDVASDESIERAFA   75 (252)
T ss_pred             CccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc-----cCceeEEeCCCCCHHHHHHHHH
Confidence            554  35899999999  79999999999999999999988743222222221     1357889999999988876553


Q ss_pred             -------CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCC
Q 040253           77 -------GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        77 -------~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~  139 (338)
                             ++|++||+||....         ...+..+..+++|+.+...+.+++...- ...++|++||.....      
T Consensus        76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------  149 (252)
T PRK06079         76 TIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSER------  149 (252)
T ss_pred             HHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccc------
Confidence                   58999999985421         1112244678889999888887765431 135899999864331      


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN  216 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  216 (338)
                                      +.+....|+.+|...+.+.+.++.++   |++++.+.||.+-.+........  ..........
T Consensus       150 ----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~--~~~~~~~~~~  211 (252)
T PRK06079        150 ----------------AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGH--KDLLKESDSR  211 (252)
T ss_pred             ----------------cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCCh--HHHHHHHHhc
Confidence                            00123479999999999999998874   89999999999876532111110  0001101111


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       .+.     .++...+|+++++.+++...
T Consensus       212 -~p~-----~r~~~pedva~~~~~l~s~~  234 (252)
T PRK06079        212 -TVD-----GVGVTIEEVGNTAAFLLSDL  234 (252)
T ss_pred             -Ccc-----cCCCCHHHHHHHHHHHhCcc
Confidence             111     35788999999999999753

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.76  E-value=5.1e-17  Score=136.68  Aligned_cols=189  Identities=16%  Similarity=0.165  Sum_probs=138.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh---C--Ccc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI---R--GCT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~--~~d   79 (338)
                      |++++||||+|+||++++++|++.|++|++++|+++..+.+..        .+++++.+|++|.+++.+++   .  ++|
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~~~~d   72 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQA--------LGAEALALDVADPASVAGLAWKLDGEALD   72 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHh--------ccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence            4799999999999999999999999999999998665443322        24678999999998887754   2  489


Q ss_pred             EEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCcee-eeccCCCCCCcCCCCCCc
Q 040253           80 GVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGT-LDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        80 ~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v-~~~~~~~~~~~~e~~~~~  149 (338)
                      +|||+++.....       ..+..+..++.|+.++.++++++...  ....+++++||... ++  ..            
T Consensus        73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--~~------------  138 (222)
T PRK06953         73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIG--DA------------  138 (222)
T ss_pred             EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccc--cc------------
Confidence            999999865211       12234578999999999999888642  11357899988643 32  10            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcc
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF  228 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                            +..+...|+.+|...+.+++.++.++ +++++.++||.+..+...                .         ...
T Consensus       139 ------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~----------------~---------~~~  187 (222)
T PRK06953        139 ------TGTTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG----------------A---------QAA  187 (222)
T ss_pred             ------cCCCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC----------------C---------CCC
Confidence                  00123469999999999999988776 789999999988765311                0         124


Q ss_pred             ccHHHHHHHHHHhhcCCC
Q 040253          229 VHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~  246 (338)
                      +..++.++.+..++....
T Consensus       188 ~~~~~~~~~~~~~~~~~~  205 (222)
T PRK06953        188 LDPAQSVAGMRRVIAQAT  205 (222)
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            577888888888876543

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.76  E-value=3.4e-17  Score=141.17  Aligned_cols=210  Identities=16%  Similarity=0.122  Sum_probs=136.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+|+||||+|.||.+++++|++.|++|+++.|+. +........... ....++.++.+|++|++++.++++      
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQ-KYGIKAKAYPLNILEPETYKELFKKIDEDF   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHH-hcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            358999999999999999999999999998876643 222222111110 012468899999999988877654      


Q ss_pred             -CccEEEEecccCCC------C-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCC
Q 040253           77 -GCTGVFHLATPMDF------E-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        77 -~~d~vi~~a~~~~~------~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                       ++|++||+|+....      .     ..+.....++.|+.+...+.+.+    ++.+ ..++|++||.....  .    
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~----  158 (260)
T PRK08416         86 DRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG-GGSIISLSSTGNLV--Y----  158 (260)
T ss_pred             CCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC-CEEEEEEecccccc--C----
Confidence             58999999975321      0     01122345667777666554444    3333 46899999965331  0    


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE  217 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  217 (338)
                                      .+....|+.+|.+.+.+++.++.++   |++++++.||.+-.+.... .... .......... 
T Consensus       159 ----------------~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~-~~~~-~~~~~~~~~~-  219 (260)
T PRK08416        159 ----------------IENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKA-FTNY-EEVKAKTEEL-  219 (260)
T ss_pred             ----------------CCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhh-ccCC-HHHHHHHHhc-
Confidence                            0123479999999999999999886   8999999998875442111 0000 0000000010 


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...     ..+...+|++.++++++...
T Consensus       220 ~~~-----~r~~~p~~va~~~~~l~~~~  242 (260)
T PRK08416        220 SPL-----NRMGQPEDLAGACLFLCSEK  242 (260)
T ss_pred             CCC-----CCCCCHHHHHHHHHHHcChh
Confidence            111     35788999999999998653

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.2e-16  Score=138.96  Aligned_cols=218  Identities=21%  Similarity=0.218  Sum_probs=159.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|||||||||+|++++++|+++|++|.+++|+++......         ..+++..+|+.++..+...++++|.++++.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~---------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~   71 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA---------GGVEVVLGDLRDPKSLVAGAKGVDGVLLIS   71 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc---------CCcEEEEeccCCHhHHHHHhccccEEEEEe
Confidence            58999999999999999999999999999999988766553         478999999999999999999999999998


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +... ...    ...........+..+++. .+ .++++++|...+-.                        .....|..
T Consensus        72 ~~~~-~~~----~~~~~~~~~~~~~a~~a~-~~-~~~~~~~s~~~~~~------------------------~~~~~~~~  120 (275)
T COG0702          72 GLLD-GSD----AFRAVQVTAVVRAAEAAG-AG-VKHGVSLSVLGADA------------------------ASPSALAR  120 (275)
T ss_pred             cccc-ccc----chhHHHHHHHHHHHHHhc-CC-ceEEEEeccCCCCC------------------------CCccHHHH
Confidence            8543 211    123344444455555555 34 67888888754321                        12347999


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      +|..+|..+.    ..|++++++|+..+|.......    ...  ....+.+.........+++..+|+++++..++..+
T Consensus       121 ~~~~~e~~l~----~sg~~~t~lr~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~i~~~d~a~~~~~~l~~~  190 (275)
T COG0702         121 AKAAVEAALR----SSGIPYTTLRRAAFYLGAGAAF----IEA--AEAAGLPVIPRGIGRLSPIAVDDVAEALAAALDAP  190 (275)
T ss_pred             HHHHHHHHHH----hcCCCeEEEecCeeeeccchhH----HHH--HHhhCCceecCCCCceeeeEHHHHHHHHHHHhcCC
Confidence            9999999995    4699999999777765442211    111  11112221111112478999999999999999877


Q ss_pred             CC-CCceEE-ecCCCCHHHHHHHHHHhCCC
Q 040253          246 NA-KGRYIC-SSHPATILELAKFLREKYPE  273 (338)
Q Consensus       246 ~~-~~~~~~-~~~~~t~~e~~~~i~~~~~~  273 (338)
                      .. +.+|.+ +++..+..++++.+....++
T Consensus       191 ~~~~~~~~l~g~~~~~~~~~~~~l~~~~gr  220 (275)
T COG0702         191 ATAGRTYELAGPEALTLAELASGLDYTIGR  220 (275)
T ss_pred             cccCcEEEccCCceecHHHHHHHHHHHhCC
Confidence            54 447876 55789999999999998875

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.76  E-value=2.1e-17  Score=142.42  Aligned_cols=211  Identities=13%  Similarity=0.093  Sum_probs=141.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      .+|+++||||+|.||.+++++|+++|++|++++|+.+............ ...++..+.+|++|.+++.++++   ++|+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA-HGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-cCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            4689999999999999999999999999999999876544433221110 11467889999999988877664   6999


Q ss_pred             EEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      +||+++....     ...+..+..++.|+.+...+.+++    .+.+ ..++|++||.....                  
T Consensus        85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss~~~~~------------------  145 (259)
T PRK06125         85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIGAAGEN------------------  145 (259)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecCccccC------------------
Confidence            9999986431     111233466788999888887765    3333 35899998864321                  


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh----H--HHhhhhcccCCCCCCC
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS----L--ITALSPITRNEAHYPI  222 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~----~--~~~~~~~~~~~~~~~~  222 (338)
                          +......|+.+|.+.+.+++.++.+.   |++++.+.||.+..+.........    +  .........   ..+ 
T Consensus       146 ----~~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-  217 (259)
T PRK06125        146 ----PDADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLA---GLP-  217 (259)
T ss_pred             ----CCCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhc---cCC-
Confidence                11123478999999999999887654   899999999888765311000000    0  000000000   001 


Q ss_pred             CCCCccccHHHHHHHHHHhhcC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                        ...+...+|+++++++++..
T Consensus       218 --~~~~~~~~~va~~~~~l~~~  237 (259)
T PRK06125        218 --LGRPATPEEVADLVAFLASP  237 (259)
T ss_pred             --cCCCcCHHHHHHHHHHHcCc
Confidence              13477899999999999864

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.75  E-value=7.4e-17  Score=139.99  Aligned_cols=209  Identities=17%  Similarity=0.100  Sum_probs=138.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |+++||||+|.||.+++++|+++|++|++++|+.+............ ....+.++.+|++|++++.++++       ++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARAL-GGTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            58999999999999999999999999999999765443332211111 11234567899999887765543       58


Q ss_pred             cEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |+|||++|.....     ..+..+..+++|+.++..+++++..    .+...++|++||...+.  .             
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~--~-------------  144 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV--A-------------  144 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC--C-------------
Confidence            9999999864321     1122346789999999999988642    22136899999975432  0             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChh---HHHhhhhcccCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPS---LITALSPITRNEAHYPII  223 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  223 (338)
                             ......|+.+|...+.+.+.++.+   +++++++++||.+.++.........   .......       +...
T Consensus       145 -------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------~~~~  210 (272)
T PRK07832        145 -------LPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQK-------WVDR  210 (272)
T ss_pred             -------CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHH-------HHHh
Confidence                   012347999999888877777644   4899999999999877532110000   0000000       0000


Q ss_pred             CCCccccHHHHHHHHHHhhcC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .....+..+|+|++++.++.+
T Consensus       211 ~~~~~~~~~~vA~~~~~~~~~  231 (272)
T PRK07832        211 FRGHAVTPEKAAEKILAGVEK  231 (272)
T ss_pred             cccCCCCHHHHHHHHHHHHhc
Confidence            012468999999999999964

>PRK05855 short chain dehydrogenase; Validated

Probab=99.75  E-value=3.5e-17  Score=157.28  Aligned_cols=216  Identities=16%  Similarity=0.074  Sum_probs=146.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ..+++|||||+|+||++++++|.++|++|++++|+.+...........  ...++.++.+|++|++++.++++       
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g  391 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRA--AGAVAHAYRVDVSDADAMEAFAEWVRAEHG  391 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999987655444332211  12468899999999998877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+.....+++|+.++.++.+++.    +.+...++|++||...+..             
T Consensus       392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~-------------  458 (582)
T PRK05855        392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAP-------------  458 (582)
T ss_pred             CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC-------------
Confidence            489999999865421     122334677899999998887653    3331358999999887741             


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHH-hhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLIT-ALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  223 (338)
                               ......|+.+|.+.+.+++.++.+.   |++++++.||.+-.+............ .............  
T Consensus       459 ---------~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--  527 (582)
T PRK05855        459 ---------SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTNIVATTRFAGADAEDEARRRGRADKLY--  527 (582)
T ss_pred             ---------CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCcccchhccccCCcccchhhhHHhhhhhhc--
Confidence                     1234589999999999988887664   899999999988654322110000000 0000000000000  


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                       ....+..+|+|++++.++.++.
T Consensus       528 -~~~~~~p~~va~~~~~~~~~~~  549 (582)
T PRK05855        528 -QRRGYGPEKVAKAIVDAVKRNK  549 (582)
T ss_pred             -cccCCCHHHHHHHHHHHHHcCC
Confidence             0123467999999999998753

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.74  E-value=1.4e-16  Score=138.32  Aligned_cols=229  Identities=16%  Similarity=0.171  Sum_probs=142.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~   77 (338)
                      |.|+++|||| |+||.+++++|. +|++|++++|+.+...........  ...++.++.+|++|.+++.++++      +
T Consensus         1 ~~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~   76 (275)
T PRK06940          1 MKEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLRE--AGFDVSTQEVDVSSRESVKALAATAQTLGP   76 (275)
T ss_pred             CCCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence            3578899997 689999999996 799999999986554433222111  12468889999999988877664      5


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccC---CCCCCcCCCCCCch---
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEE---HRKPVYDETSWSDL---  150 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~---~~~~~~~e~~~~~~---  150 (338)
                      +|++||+||....  ....+..+++|+.++.++++++... ....++|++||.+......   .........++.+.   
T Consensus        77 id~li~nAG~~~~--~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (275)
T PRK06940         77 VTGLVHTAGVSPS--QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSL  154 (275)
T ss_pred             CCEEEECCCcCCc--hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccccc
Confidence            8999999996432  2445688999999999998887543 1123567777765432100   00000000000000   


Q ss_pred             hhhhh--ccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          151 DFVRS--VKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       151 ~~~~~--~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                      +..++  ...+...|+.||.+.+.+.+.++.++   |++++.+.||.+..+.................... ...     
T Consensus       155 ~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~-~p~-----  228 (275)
T PRK06940        155 PFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAK-SPA-----  228 (275)
T ss_pred             ccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhh-CCc-----
Confidence            00000  00134579999999999998887764   79999999998876532111000000000000011 111     


Q ss_pred             CccccHHHHHHHHHHhhcC
Q 040253          226 GQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~  244 (338)
                      ..+...+|+|+++++++..
T Consensus       229 ~r~~~peeia~~~~fL~s~  247 (275)
T PRK06940        229 GRPGTPDEIAALAEFLMGP  247 (275)
T ss_pred             ccCCCHHHHHHHHHHHcCc
Confidence            3578899999999999864

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.74  E-value=9.7e-17  Score=136.55  Aligned_cols=202  Identities=20%  Similarity=0.210  Sum_probs=139.4

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Ccc
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GCT   79 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d   79 (338)
                      |+||||+|+||.+++++|.++|++|.+++|..+ .........  .....++.++.+|++|.+++.++++       .+|
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~   78 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAI--QAQGGNARLLQFDVADRVACRTLLEADIAEHGAYY   78 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH--HHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            689999999999999999999999999887543 222222111  1112468999999999988776653       579


Q ss_pred             EEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH-----hCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           80 GVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK-----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        80 ~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      ++||+++.....     ..+.....++.|+.++.++++++.     ..+ ..++|++||...+.  ..            
T Consensus        79 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~vsS~~~~~--~~------------  143 (239)
T TIGR01831        79 GVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQ-GGRIITLASVSGVM--GN------------  143 (239)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC-CeEEEEEcchhhcc--CC------------
Confidence            999999864321     123345678899999999888652     233 46899999975543  11            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                              .....|+.+|...+.+.+.++.++   |++++.++||.+.++.... ........    ... ...     .
T Consensus       144 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~----~~~-~~~-----~  204 (239)
T TIGR01831       144 --------RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE-VEHDLDEA----LKT-VPM-----N  204 (239)
T ss_pred             --------CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh-hhHHHHHH----Hhc-CCC-----C
Confidence                    123479999999998888877664   8999999999987765321 11111100    011 111     3


Q ss_pred             ccccHHHHHHHHHHhhcCC
Q 040253          227 QFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~  245 (338)
                      .+...+|+++++.+++...
T Consensus       205 ~~~~~~~va~~~~~l~~~~  223 (239)
T TIGR01831       205 RMGQPAEVASLAGFLMSDG  223 (239)
T ss_pred             CCCCHHHHHHHHHHHcCch
Confidence            4678899999999999754

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.74  E-value=1.1e-16  Score=138.81  Aligned_cols=211  Identities=14%  Similarity=0.106  Sum_probs=142.9

Q ss_pred             CCCCCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGSIAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |....|+++||||+  +-||..++++|++.|++|++.+|+.+..+.++.+.....  .. ..+.+|++|.+++.++++  
T Consensus         1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i   77 (274)
T PRK08415          1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESL   77 (274)
T ss_pred             CccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHH
Confidence            66778999999997  799999999999999999999987533333333322111  22 578999999988877653  


Q ss_pred             -----CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCC
Q 040253           77 -----GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                           ++|++||+||....         ...+..+..+++|+.+...+.+++... ....++|++||.+...        
T Consensus        78 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~--------  149 (274)
T PRK08415         78 KKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVK--------  149 (274)
T ss_pred             HHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCcc--------
Confidence                 58999999985321         111234567899999998888766542 1135899999864321        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                    +.+....|+.+|.+.+.+.+.++.++   |++++.+.||.+..+.... ... ...... ......
T Consensus       150 --------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~-~~~~~~-~~~~~~  212 (274)
T PRK08415        150 --------------YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASG-IGD-FRMILK-WNEINA  212 (274)
T ss_pred             --------------CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhc-cch-hhHHhh-hhhhhC
Confidence                          00123479999999999999998874   7999999999886542110 000 000000 000000


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      +.     ..+...+|+++++++++..
T Consensus       213 pl-----~r~~~pedva~~v~fL~s~  233 (274)
T PRK08415        213 PL-----KKNVSIEEVGNSGMYLLSD  233 (274)
T ss_pred             ch-----hccCCHHHHHHHHHHHhhh
Confidence            11     3477899999999999874

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.73  E-value=2.4e-16  Score=136.46  Aligned_cols=209  Identities=13%  Similarity=0.075  Sum_probs=140.7

Q ss_pred             CCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..|++|||||++  -||..++++|++.|++|++.+|+....+..+.+....   .....+.+|++|.+++.++++     
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---g~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESL---GSDFVLPCDVEDIASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhc---CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            358899999997  9999999999999999999988754333333332211   123468999999988877653     


Q ss_pred             --CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|++||+||....         ...+..+..+++|+.+...+.+++...- ...++|++||.+...  .        
T Consensus        83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~--~--------  152 (271)
T PRK06505         83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTR--V--------  152 (271)
T ss_pred             hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccc--c--------
Confidence              68999999986431         1122344667889999888877664321 125899999865431  0        


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  .+....|+.+|.+.+.+.+.++.++   |++++.|.||.+-.+.... .... ....... ....+. 
T Consensus       153 ------------~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~-~~~~-~~~~~~~-~~~~p~-  216 (271)
T PRK06505        153 ------------MPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAG-IGDA-RAIFSYQ-QRNSPL-  216 (271)
T ss_pred             ------------CCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccc-Ccch-HHHHHHH-hhcCCc-
Confidence                        0123479999999999999998875   7999999999887653211 1110 0000000 011111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                          ..+...+|+++++++++...
T Consensus       217 ----~r~~~peeva~~~~fL~s~~  236 (271)
T PRK06505        217 ----RRTVTIDEVGGSALYLLSDL  236 (271)
T ss_pred             ----cccCCHHHHHHHHHHHhCcc
Confidence                24678899999999998743

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.73  E-value=5e-16  Score=134.42  Aligned_cols=206  Identities=19%  Similarity=0.167  Sum_probs=134.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC-CCcHHHHHHHhcCCCCCCcEEEEecccCCCCCch----hhh-----
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKKVKHLLELPKASTHLTLWKADLAEEGNFD----EPI-----   75 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~----~~~-----   75 (338)
                      ++++||||+|+||.+++++|+++|++|+++.|+ .+....+...... .....+..+.+|++|.+.+.    +++     
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNA-RRPNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHh-ccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            579999999999999999999999999988764 3333322221111 01134667899999987553    222     


Q ss_pred             --CCccEEEEecccCCCCC---CC-------------ccchhhhhhhHHHHHHHHHHHhCC---------CccEEEEecC
Q 040253           76 --RGCTGVFHLATPMDFES---KD-------------PENEVIRPTINGMVSIMRACKNAK---------TVRRLVFTSS  128 (338)
Q Consensus        76 --~~~d~vi~~a~~~~~~~---~~-------------~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~Ss  128 (338)
                        .++|+|||+||......   .+             .....+++|+.+...+.+++....         ...+++++||
T Consensus        81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s  160 (267)
T TIGR02685        81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCD  160 (267)
T ss_pred             ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehh
Confidence              36999999998543110   01             123568899999988887654321         1235777776


Q ss_pred             ceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChh
Q 040253          129 AGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPS  205 (338)
Q Consensus       129 ~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~  205 (338)
                      .....                      +..+...|+.+|...+.+++.++.+   +|+++++++||.+..+...   ...
T Consensus       161 ~~~~~----------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~---~~~  215 (267)
T TIGR02685       161 AMTDQ----------------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAM---PFE  215 (267)
T ss_pred             hhccC----------------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCcccc---chh
Confidence            43321                      1124558999999999999999877   4899999999998755321   111


Q ss_pred             HHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          206 LITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ......   .. ..+  .  ..+...+|++++++.++...
T Consensus       216 ~~~~~~---~~-~~~--~--~~~~~~~~va~~~~~l~~~~  247 (267)
T TIGR02685       216 VQEDYR---RK-VPL--G--QREASAEQIADVVIFLVSPK  247 (267)
T ss_pred             HHHHHH---Hh-CCC--C--cCCCCHHHHHHHHHHHhCcc
Confidence            111110   11 111  0  24678999999999998754

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.73  E-value=7.8e-16  Score=135.71  Aligned_cols=202  Identities=17%  Similarity=0.107  Sum_probs=136.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+++++||||+|+||.+++++|+++|++|++.+|+.. ..... ..+..   ...++.++.+|++|.+++.++++     
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~---~g~~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRA---AGAKAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHh---cCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999887543 22222 22221   12468899999999988777654     


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC----------CccEEEEecCceeeeccCCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK----------TVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~----------~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++..+-          ...++|++||...+.  ..   
T Consensus        88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~~---  162 (306)
T PRK07792         88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV--GP---  162 (306)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc--CC---
Confidence             689999999865421     122344678899999999988764210          024899999976543  10   


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE  217 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  217 (338)
                                       .....|+.+|...+.+++.++.+   +|++++++.|+.  ...    +....   ..   ...
T Consensus       163 -----------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~--~t~----~~~~~---~~---~~~  213 (306)
T PRK07792        163 -----------------VGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA--RTA----MTADV---FG---DAP  213 (306)
T ss_pred             -----------------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC--CCc----hhhhh---cc---ccc
Confidence                             12347999999999999988876   489999999962  111    11000   00   000


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      ...  ......+..+|++.++..++..
T Consensus       214 ~~~--~~~~~~~~pe~va~~v~~L~s~  238 (306)
T PRK07792        214 DVE--AGGIDPLSPEHVVPLVQFLASP  238 (306)
T ss_pred             hhh--hhccCCCCHHHHHHHHHHHcCc
Confidence            000  0113456899999999988864

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.73  E-value=1.5e-16  Score=154.95  Aligned_cols=197  Identities=18%  Similarity=0.181  Sum_probs=145.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||.+++++|+++|++|++++|+++...........  ...++.++.+|+.|.+++.++++       +
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  448 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRA--KGGTAHAYTCDLTDSAAVDHTVKDILAEHGH  448 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            57999999999999999999999999999999987654443322111  12468899999999998887765       6


Q ss_pred             ccEEEEecccCCCC----C---CCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           78 CTGVFHLATPMDFE----S---KDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        78 ~d~vi~~a~~~~~~----~---~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      +|++||+||.....    .   .+..+..+++|+.++.++.+++    ++.+ ..++|++||..++..            
T Consensus       449 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~------------  515 (657)
T PRK07201        449 VDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR-FGHVVNVSSIGVQTN------------  515 (657)
T ss_pred             CCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEECChhhcCC------------
Confidence            89999999864211    0   1223467889999988876665    3344 579999999877741            


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                ......|+.+|.+.+.+++.++.++   |+++++++||.+..+...+..            .    +   
T Consensus       516 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~------------~----~---  566 (657)
T PRK07201        516 ----------APRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK------------R----Y---  566 (657)
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc------------c----c---
Confidence                      1123579999999999999888764   899999999998765422110            0    0   


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .....+..+++|+.++..+.+.
T Consensus       567 ~~~~~~~~~~~a~~i~~~~~~~  588 (657)
T PRK07201        567 NNVPTISPEEAADMVVRAIVEK  588 (657)
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC
Confidence            0123678999999999988653

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.72  E-value=5.6e-16  Score=133.21  Aligned_cols=211  Identities=16%  Similarity=0.095  Sum_probs=140.7

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..|+++||||+  +-||.+++++|+++|++|++.+|+....+.++.+..... ..++..+.+|++|.+++.++++     
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            36899999997  899999999999999999998886544344443332111 1467889999999988877653     


Q ss_pred             --CccEEEEecccCCC----C-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMDF----E-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~~----~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|++||+|+....    .     ..+.....+++|+.+...+.+++...- ...++|++||....-           
T Consensus        85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-----------  153 (257)
T PRK08594         85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER-----------  153 (257)
T ss_pred             CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc-----------
Confidence              58999999985421    0     111123456788888877776655421 135899999864431           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +.+....|+.+|.+.+.+.+.++.++   |++++.+.||.+..+.... ... ........... ... 
T Consensus       154 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~-~~~-~~~~~~~~~~~-~p~-  218 (257)
T PRK08594        154 -----------VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKG-VGG-FNSILKEIEER-APL-  218 (257)
T ss_pred             -----------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhh-hcc-ccHHHHHHhhc-CCc-
Confidence                       00123479999999999999988765   7999999999886653110 000 00000000000 011 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                          .++...+|+++++++++...
T Consensus       219 ----~r~~~p~~va~~~~~l~s~~  238 (257)
T PRK08594        219 ----RRTTTQEEVGDTAAFLFSDL  238 (257)
T ss_pred             ----cccCCHHHHHHHHHHHcCcc
Confidence                34678999999999998753

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.72  E-value=1.6e-16  Score=131.32  Aligned_cols=187  Identities=17%  Similarity=0.133  Sum_probs=135.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi   82 (338)
                      |+++||||+|.||.+++++|.++ ++|++++|+..                   .+.+|++|.+++.++++   ++|++|
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~id~lv   60 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-------------------DVQVDITDPASIRALFEKVGKVDAVV   60 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-------------------ceEecCCChHHHHHHHHhcCCCCEEE
Confidence            48999999999999999999999 99999988642                   35789999998888765   689999


Q ss_pred             EecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           83 HLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        83 ~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      |+||.....     ..+.....+++|+.++.++.+++...- ...+++++||.....                      +
T Consensus        61 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~----------------------~  118 (199)
T PRK07578         61 SAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE----------------------P  118 (199)
T ss_pred             ECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC----------------------C
Confidence            999854321     112344567889999999988775421 135799999865431                      1


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHH--cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHH
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEE--NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDL  234 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  234 (338)
                      .+....|+.+|...+.+.+.++.+  .|++++.+.||.+-.+..         . .    +.  .++   ...++..+|+
T Consensus       119 ~~~~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~---------~-~----~~--~~~---~~~~~~~~~~  179 (199)
T PRK07578        119 IPGGASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLE---------K-Y----GP--FFP---GFEPVPAARV  179 (199)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchh---------h-h----hh--cCC---CCCCCCHHHH
Confidence            113448999999999999988886  489999999987743210         0 0    00  011   1347899999


Q ss_pred             HHHHHHhhcCCCCCCceEE
Q 040253          235 CSAHIFLFEHPNAKGRYIC  253 (338)
Q Consensus       235 a~~~~~~l~~~~~~~~~~~  253 (338)
                      |+++..+++....++++++
T Consensus       180 a~~~~~~~~~~~~g~~~~~  198 (199)
T PRK07578        180 ALAYVRSVEGAQTGEVYKV  198 (199)
T ss_pred             HHHHHHHhccceeeEEecc
Confidence            9999999987544545543

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.72  E-value=4.5e-16  Score=133.82  Aligned_cols=206  Identities=16%  Similarity=0.112  Sum_probs=137.5

Q ss_pred             CCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCC--------cHHHHHHHh-cCCCCCCcEEEEecccCCCCCch
Q 040253            4 IAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPD--------NKKKVKHLL-ELPKASTHLTLWKADLAEEGNFD   72 (338)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~   72 (338)
                      .+++|+||||+|  .||.+++++|+++|++|++..|...        .......+. .......++..+.+|++|.+++.
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i~   84 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAPK   84 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence            368999999995  7999999999999999988764210        111111111 11111246888999999999887


Q ss_pred             hhhC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccC
Q 040253           73 EPIR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        73 ~~~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~  136 (338)
                      ++++       .+|++||+|+.....     ..+..+..+++|+.+...+..++    ++.+ ..++|++||.....   
T Consensus        85 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~---  160 (256)
T PRK12859         85 ELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKS-GGRIINMTSGQFQG---  160 (256)
T ss_pred             HHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEEcccccCC---
Confidence            7663       489999999864321     11223456888999888775444    3333 46999999975432   


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhc
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPI  213 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  213 (338)
                                         +..+...|+.+|.+.+.+.+.++.+   +|++++.++||.+-.+...    ........  
T Consensus       161 -------------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~----~~~~~~~~--  215 (256)
T PRK12859        161 -------------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMT----EEIKQGLL--  215 (256)
T ss_pred             -------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCC----HHHHHHHH--
Confidence                               1123458999999999999988876   4899999999988654311    11111000  


Q ss_pred             ccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          214 TRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       .. ..+     ..+...+|+++++..++...
T Consensus       216 -~~-~~~-----~~~~~~~d~a~~~~~l~s~~  240 (256)
T PRK12859        216 -PM-FPF-----GRIGEPKDAARLIKFLASEE  240 (256)
T ss_pred             -hc-CCC-----CCCcCHHHHHHHHHHHhCcc
Confidence             00 011     24667899999999988653

>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]

Probab=99.72  E-value=9.4e-17  Score=127.67  Aligned_cols=275  Identities=18%  Similarity=0.152  Sum_probs=172.9

Q ss_pred             CcEEEEeCCchhhHHHHHH-----HHHHCC----CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh
Q 040253            5 AETVCVTGASGFIGSWLIM-----RLLERG----YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI   75 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   75 (338)
                      ..+.+.-+++|+|+.+|..     ++-+.+    |.|++++|.+.+.              ++.+.+.|..-..      
T Consensus        12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~--------------ritw~el~~~Gip------   71 (315)
T KOG3019|consen   12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA--------------RITWPELDFPGIP------   71 (315)
T ss_pred             cccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc--------------ccccchhcCCCCc------
Confidence            3457778899999998887     444444    8999999987652              4455555442211      


Q ss_pred             CCccEEEEeccc----CC-CCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           76 RGCTGVFHLATP----MD-FESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        76 ~~~d~vi~~a~~----~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      -.++++++.++.    .. .....-..+..-..+..+..|++++.... ..+.+|.+|..++|-  +.....++|+++  
T Consensus        72 ~sc~a~vna~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~--pS~s~eY~e~~~--  147 (315)
T KOG3019|consen   72 ISCVAGVNAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYV--PSESQEYSEKIV--  147 (315)
T ss_pred             eehHHHHhhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEec--cccccccccccc--
Confidence            134445554442    11 11112222334445666788999998775 245799999999996  444567777762  


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC-Ccc
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ-GQF  228 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  228 (338)
                             ....+  ..+++..|-.-.........+++++|.|.|.|.+-+.  ...+...+  ..+...+++.+.+ +.|
T Consensus       148 -------~qgfd--~~srL~l~WE~aA~~~~~~~r~~~iR~GvVlG~gGGa--~~~M~lpF--~~g~GGPlGsG~Q~fpW  214 (315)
T KOG3019|consen  148 -------HQGFD--ILSRLCLEWEGAALKANKDVRVALIRIGVVLGKGGGA--LAMMILPF--QMGAGGPLGSGQQWFPW  214 (315)
T ss_pred             -------cCChH--HHHHHHHHHHHHhhccCcceeEEEEEEeEEEecCCcc--hhhhhhhh--hhccCCcCCCCCeeeee
Confidence                   11122  2233333321111111125899999999999977332  11111111  2345556777777 789


Q ss_pred             ccHHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCC---CCCCCCCCc---cc----cccccccchhhh
Q 040253          229 VHLDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEF---NVPTEFEDV---DE----NMKNMLFSSKKL  297 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~---~~~~~~~~~---~~----~~~~~~~~~~~~  297 (338)
                      ||++|++..+..+++++.-.|+.|. .+++.+..|+.+.+.+.+++.   ++|......   +.    ...-...-..+.
T Consensus       215 IHv~DL~~li~~ale~~~v~GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~pvP~fvvqA~fG~erA~~vLeGqKV~Pqra  294 (315)
T KOG3019|consen  215 IHVDDLVNLIYEALENPSVKGVINGVAPNPVRNGEFCQQLGSALSRPSWLPVPDFVVQALFGPERATVVLEGQKVLPQRA  294 (315)
T ss_pred             eehHHHHHHHHHHHhcCCCCceecccCCCccchHHHHHHHHHHhCCCcccCCcHHHHHHHhCccceeEEeeCCcccchhH
Confidence            9999999999999999988999986 789999999999999998752   111111000   00    111223445667


Q ss_pred             hhcCCccccc-HHHHHHHHH
Q 040253          298 TDLGFKFKYS-LDDMFTGAV  316 (338)
Q Consensus       298 ~~lg~~~~~~-~~~~i~~~~  316 (338)
                      .++||+++|+ +.+++++++
T Consensus       295 l~~Gf~f~yp~vk~Al~~i~  314 (315)
T KOG3019|consen  295 LELGFEFKYPYVKDALRAIM  314 (315)
T ss_pred             hhcCceeechHHHHHHHHHh
Confidence            7799999998 899998875

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.72  E-value=6.9e-16  Score=132.78  Aligned_cols=208  Identities=15%  Similarity=0.087  Sum_probs=140.9

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|+++||||+  +-||.+++++|++.|++|++.+|+.+..+.++.+....   ..+..+.+|++|.+++.++++     
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHHH
Confidence            46899999998  59999999999999999999999765433333332211   234678999999988877653     


Q ss_pred             --CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|++||+||....         ...+..+..+++|+.+...+.+++...- ...++|++||.....           
T Consensus        86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~-----------  154 (258)
T PRK07533         86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK-----------  154 (258)
T ss_pred             cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc-----------
Confidence              58999999985431         1112345688999999999888764321 125799998854321           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +......|+.+|.+.+.+.+.++.++   |+++..+.||.+-.+.... ... ........... ... 
T Consensus       155 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~-~~~-~~~~~~~~~~~-~p~-  219 (258)
T PRK07533        155 -----------VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASG-IDD-FDALLEDAAER-APL-  219 (258)
T ss_pred             -----------CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhc-cCC-cHHHHHHHHhc-CCc-
Confidence                       00123479999999999999888764   8999999999886543211 000 00000100011 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                          ..+...+|+++++++++..
T Consensus       220 ----~r~~~p~dva~~~~~L~s~  238 (258)
T PRK07533        220 ----RRLVDIDDVGAVAAFLASD  238 (258)
T ss_pred             ----CCCCCHHHHHHHHHHHhCh
Confidence                3477889999999999875

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.72  E-value=9.7e-17  Score=135.26  Aligned_cols=167  Identities=24%  Similarity=0.264  Sum_probs=122.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----Ccc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----GCT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d   79 (338)
                      |++|+||||+|+||++++++|++.|++|++++|++.....+...       .++.++.+|++|.+++.++++     ++|
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~~~~~id   73 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQAL-------PGVHIEKLDMNDPASLDQLLQRLQGQRFD   73 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhc-------cccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence            47899999999999999999999999999999988765444322       356788899999887777654     589


Q ss_pred             EEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           80 GVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        80 ~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      +|||+||.....       ..+.....+..|+.+...+.+++...-  ...+++++||.  ++...  ..          
T Consensus        74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~--~g~~~--~~----------  139 (225)
T PRK08177         74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ--LGSVE--LP----------  139 (225)
T ss_pred             EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC--ccccc--cC----------
Confidence            999999864311       112234567789999888888775431  12578888874  33111  00          


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPF  197 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~  197 (338)
                           +..+...|+.+|.+.+.+++.++.++   +++++.++||.+-.+.
T Consensus       140 -----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~  184 (225)
T PRK08177        140 -----DGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM  184 (225)
T ss_pred             -----CCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence                 11123479999999999999988764   6899999999886543

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.72  E-value=5.6e-16  Score=137.06  Aligned_cols=240  Identities=17%  Similarity=0.145  Sum_probs=146.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------   75 (338)
                      |.++++||||++.||.+++++|+++| ++|++++|+.+..........  ....++..+.+|++|.+++.+++       
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   79 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG--MPKDSYTIMHLDLGSLDSVRQFVQQFRESG   79 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999 999999998765444332221  11246788999999998876655       


Q ss_pred             CCccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHH----HhCC-CccEEEEecCceeeeccCCC--CCCc
Q 040253           76 RGCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRAC----KNAK-TVRRLVFTSSAGTLDVEEHR--KPVY  142 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~~~v~~Ss~~v~~~~~~~--~~~~  142 (338)
                      .++|++||+||.....      ..+..+..+++|+.+...+.+++    ++.+ ...++|++||...+......  ..+.
T Consensus        80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~  159 (314)
T TIGR01289        80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKA  159 (314)
T ss_pred             CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcc
Confidence            3589999999864311      11233467889999987776554    3332 13699999998765311000  0000


Q ss_pred             CCCC-------CCch-hhh-hhccCCCchHHHHHHHHHHHHHHHHHHc----CccEEEEcCCceeCCCCCCCCChhHHHh
Q 040253          143 DETS-------WSDL-DFV-RSVKMTGWMYFVSKTLAEQAAWKFAEEN----NIDFISIIPSLVVGPFLTSSMPPSLITA  209 (338)
Q Consensus       143 ~e~~-------~~~~-~~~-~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~  209 (338)
                      +..+       +... ... ..+..+...|+.||++...+.+.+++++    |+.++.+.||.+................
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~~  239 (314)
T TIGR01289       160 NLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRTL  239 (314)
T ss_pred             cccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHHH
Confidence            0000       0000 000 0112345579999999888888887653    7999999999885332211111111100


Q ss_pred             hhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCceE
Q 040253          210 LSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGRYI  252 (338)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~~~  252 (338)
                      .... ....      ...+...++.++.++.++....  .+|.|.
T Consensus       240 ~~~~-~~~~------~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~  277 (314)
T TIGR01289       240 FPPF-QKYI------TKGYVSEEEAGERLAQVVSDPKLKKSGVYW  277 (314)
T ss_pred             HHHH-HHHH------hccccchhhhhhhhHHhhcCcccCCCceee
Confidence            0000 0000      0125678889998888776533  345554

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=5.5e-16  Score=133.60  Aligned_cols=212  Identities=14%  Similarity=0.121  Sum_probs=139.6

Q ss_pred             CCCC-CcEEEEeCC--chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            1 MGSI-AETVCVTGA--SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         1 m~~~-~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      |..+ +++++||||  ++-||.+++++|+++|++|++..|+....+..+.+....   .....+.+|++|.+++.++++ 
T Consensus         1 ~~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~   77 (261)
T PRK08690          1 MGFLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAEL---DSELVFRCDVASDDEINQVFAD   77 (261)
T ss_pred             CCccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhcc---CCceEEECCCCCHHHHHHHHHH
Confidence            4443 589999997  679999999999999999998877643334444432211   234578999999998887663 


Q ss_pred             ------CccEEEEecccCCCC-------CC---CccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCC
Q 040253           77 ------GCTGVFHLATPMDFE-------SK---DPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHR  138 (338)
Q Consensus        77 ------~~d~vi~~a~~~~~~-------~~---~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~  138 (338)
                            ++|++||+||.....       ..   +..+..+++|+.+...+.+++...  ....++|++||.....     
T Consensus        78 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~-----  152 (261)
T PRK08690         78 LGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVR-----  152 (261)
T ss_pred             HHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccccc-----
Confidence                  689999999865321       01   122345677888877777654331  1135799999865442     


Q ss_pred             CCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhccc
Q 040253          139 KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITR  215 (338)
Q Consensus       139 ~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  215 (338)
                                       +.+....|+.+|.+.+.+.+.++.+   +|++++.+.||.+-.+.... .... .........
T Consensus       153 -----------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~-~~~~-~~~~~~~~~  213 (261)
T PRK08690        153 -----------------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASG-IADF-GKLLGHVAA  213 (261)
T ss_pred             -----------------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhc-CCch-HHHHHHHhh
Confidence                             0112347999999999998888765   48999999999886543211 1000 000000001


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      . .++     .++...+|+|+++.+++...
T Consensus       214 ~-~p~-----~r~~~peevA~~v~~l~s~~  237 (261)
T PRK08690        214 H-NPL-----RRNVTIEEVGNTAAFLLSDL  237 (261)
T ss_pred             c-CCC-----CCCCCHHHHHHHHHHHhCcc
Confidence            1 111     35788999999999999754

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.71  E-value=5.2e-16  Score=133.51  Aligned_cols=209  Identities=15%  Similarity=0.132  Sum_probs=140.5

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCc---HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDN---KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      ++|+++||||+  +-||.+++++|++.|++|++..|+.+.   .+..+.+...   ...+.++.+|++|++++.++++  
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~~~   81 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP---LNPSLFLPCDVQDDAQIEETFETI   81 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc---cCcceEeecCcCCHHHHHHHHHHH
Confidence            46899999986  799999999999999999888765432   2222222211   1246788999999998877653  


Q ss_pred             -----CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCC
Q 040253           77 -----GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                           ++|++||+||....         ...+..+..+++|+.+...+.+++...- ...++|++||.....        
T Consensus        82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~--------  153 (258)
T PRK07370         82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVR--------  153 (258)
T ss_pred             HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccccc--------
Confidence                 58999999985421         1112335678899999988887764321 136899999864331        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                    +.+....|+.+|.+.+.+.+.++.++   |++++++.||.+-.+.... ... .......... ..
T Consensus       154 --------------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~-~~~-~~~~~~~~~~-~~  216 (258)
T PRK07370        154 --------------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSA-VGG-ILDMIHHVEE-KA  216 (258)
T ss_pred             --------------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhc-ccc-chhhhhhhhh-cC
Confidence                          11123479999999999999998875   7999999999886653110 000 0000000000 01


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .+     .++...+|+++++.+++...
T Consensus       217 p~-----~r~~~~~dva~~~~fl~s~~  238 (258)
T PRK07370        217 PL-----RRTVTQTEVGNTAAFLLSDL  238 (258)
T ss_pred             Cc-----CcCCCHHHHHHHHHHHhChh
Confidence            11     35778899999999998753

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=9.5e-16  Score=132.82  Aligned_cols=208  Identities=14%  Similarity=0.085  Sum_probs=140.8

Q ss_pred             CcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+++||||+  +-||.+++++|++.|++|++..|+....+.++.+....   .....+.+|++|.+++.++++      
T Consensus        10 ~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159         10 GKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL---GAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc---CCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            5889999997  89999999999999999998887643333443332211   234578999999988877653      


Q ss_pred             -CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       ++|++||+||....         ...+..+..+++|+.++..+++++...- ...++|++||.....            
T Consensus        87 g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~------------  154 (272)
T PRK08159         87 GKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEK------------  154 (272)
T ss_pred             CCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccccc------------
Confidence             58999999986431         1112345678899999999988765431 136899999854321            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +.+....|+.+|.+.+.+.+.++.++   |++++++.||.+..+.... ... ...... ......+.  
T Consensus       155 ----------~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~-~~~~~~-~~~~~~p~--  219 (272)
T PRK08159        155 ----------VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASG-IGD-FRYILK-WNEYNAPL--  219 (272)
T ss_pred             ----------CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhc-CCc-chHHHH-HHHhCCcc--
Confidence                      01123479999999999999998875   7999999999886532110 000 000000 00001111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         .++...+|+|+++++++...
T Consensus       220 ---~r~~~peevA~~~~~L~s~~  239 (272)
T PRK08159        220 ---RRTVTIEEVGDSALYLLSDL  239 (272)
T ss_pred             ---cccCCHHHHHHHHHHHhCcc
Confidence               34678999999999999753

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.71  E-value=1.1e-16  Score=137.73  Aligned_cols=207  Identities=15%  Similarity=0.160  Sum_probs=138.5

Q ss_pred             EEEEeCCchhhHHHHHHHHHH----CCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC-----
Q 040253            7 TVCVTGASGFIGSWLIMRLLE----RGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG-----   77 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----   77 (338)
                      .++||||+|.||.+++++|++    .|++|++++|+.+..+.............++.++.+|++|.+++.++++.     
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            589999999999999999997    69999999998765554433222111124688899999999887776531     


Q ss_pred             ------ccEEEEecccCCCC---C-----CCccchhhhhhhHHHHHHHHHHHhC-----CCccEEEEecCceeeeccCCC
Q 040253           78 ------CTGVFHLATPMDFE---S-----KDPENEVIRPTINGMVSIMRACKNA-----KTVRRLVFTSSAGTLDVEEHR  138 (338)
Q Consensus        78 ------~d~vi~~a~~~~~~---~-----~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~~~v~~Ss~~v~~~~~~~  138 (338)
                            .|++||+||.....   .     .+..+..+++|+.++..+.+.+...     +...++|++||...+.     
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~-----  156 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ-----  156 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC-----
Confidence                  26999999854311   1     1223468899999988777655332     2135899999976542     


Q ss_pred             CCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC----ChhHHHhhh
Q 040253          139 KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM----PPSLITALS  211 (338)
Q Consensus       139 ~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~  211 (338)
                                       +.+....|+.+|.+.+.+.+.++.+.   |++++++.||.+-.+......    .........
T Consensus       157 -----------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~  219 (256)
T TIGR01500       157 -----------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQ  219 (256)
T ss_pred             -----------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHH
Confidence                             11123479999999999999988774   799999999988654211000    000000000


Q ss_pred             hcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          212 PITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                         .. ..     ...+...+|+|++++.++++
T Consensus       220 ---~~-~~-----~~~~~~p~eva~~~~~l~~~  243 (256)
T TIGR01500       220 ---EL-KA-----KGKLVDPKVSAQKLLSLLEK  243 (256)
T ss_pred             ---HH-Hh-----cCCCCCHHHHHHHHHHHHhc
Confidence               00 00     02478899999999999963

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.71  E-value=1.4e-15  Score=132.88  Aligned_cols=218  Identities=17%  Similarity=0.144  Sum_probs=142.9

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC---------CcHHHHHHHhcCCCCCCcEEEEecccCCCCC
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP---------DNKKKVKHLLELPKASTHLTLWKADLAEEGN   70 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~   70 (338)
                      |.. ..++++||||++.||.+++++|++.|++|++++|+.         +..........  ....++..+.+|++|.++
T Consensus         1 m~~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~Dv~~~~~   78 (286)
T PRK07791          1 MGLLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIV--AAGGEAVANGDDIADWDG   78 (286)
T ss_pred             CCccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHH--hcCCceEEEeCCCCCHHH
Confidence            543 368999999999999999999999999999988765         22222211111  112467889999999988


Q ss_pred             chhhhC-------CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CC-----CccEEEEecCc
Q 040253           71 FDEPIR-------GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AK-----TVRRLVFTSSA  129 (338)
Q Consensus        71 ~~~~~~-------~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-----~~~~~v~~Ss~  129 (338)
                      +.++++       ++|++||+||....     ...+..+..+++|+.++..+.+++..    ..     ...++|++||.
T Consensus        79 v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~  158 (286)
T PRK07791         79 AANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSG  158 (286)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCch
Confidence            776553       68999999986431     11233456789999998888776632    11     02489999997


Q ss_pred             eeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhH
Q 040253          130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSL  206 (338)
Q Consensus       130 ~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~  206 (338)
                      +...  .                    ......|+.+|.+.+.+.+.++.+   +|++++.|.|+ +..+     +....
T Consensus       159 ~~~~--~--------------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~-----~~~~~  210 (286)
T PRK07791        159 AGLQ--G--------------------SVGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTR-----MTETV  210 (286)
T ss_pred             hhCc--C--------------------CCCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCC-----cchhh
Confidence            6542  1                    012347999999999999988876   48999999997 3211     11111


Q ss_pred             HHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCce-EEec
Q 040253          207 ITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGRY-ICSS  255 (338)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~~-~~~~  255 (338)
                      ....   ....   .. ....+...+|+++++++++....  ..|.+ .+.+
T Consensus       211 ~~~~---~~~~---~~-~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdg  255 (286)
T PRK07791        211 FAEM---MAKP---EE-GEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEG  255 (286)
T ss_pred             HHHH---HhcC---cc-cccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcC
Confidence            0000   0110   00 11245689999999999986432  34444 4443

>PRK06484 short chain dehydrogenase; Validated

Probab=99.70  E-value=8.3e-16  Score=145.68  Aligned_cols=210  Identities=18%  Similarity=0.167  Sum_probs=144.9

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |....|+++||||++.||.+++++|+++|++|++++|+.+.........     ..++..+.+|++|++++.++++    
T Consensus         1 ~~~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   75 (520)
T PRK06484          1 SKAQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL-----GPDHHALAMDVSDEAQIREGFEQLHR   75 (520)
T ss_pred             CCCCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEeccCCHHHHHHHHHHHHH
Confidence            4456789999999999999999999999999999999866544432211     1356789999999988877663    


Q ss_pred             ---CccEEEEecccCC-------CCCCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCc
Q 040253           77 ---GCTGVFHLATPMD-------FESKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 ---~~d~vi~~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                         ++|++||+||...       ....+..+..+++|+.++..+.+++...    +...++|++||.....  ..     
T Consensus        76 ~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~--~~-----  148 (520)
T PRK06484         76 EFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLV--AL-----  148 (520)
T ss_pred             HhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCC--CC-----
Confidence               5899999998621       1112234578899999999888777543    3123899999976543  10     


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAH  219 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  219 (338)
                                     .....|+.+|...+.+++.++.++   +++++.+.||.+-.+............ ...... .  
T Consensus       149 ---------------~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~-~~~~~~-~--  209 (520)
T PRK06484        149 ---------------PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLD-PSAVRS-R--  209 (520)
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhh-hHHHHh-c--
Confidence                           123479999999999999888774   799999999988655321100000000 000000 0  


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .+   ...+...+|+++++.+++..
T Consensus       210 ~~---~~~~~~~~~va~~v~~l~~~  231 (520)
T PRK06484        210 IP---LGRLGRPEEIAEAVFFLASD  231 (520)
T ss_pred             CC---CCCCcCHHHHHHHHHHHhCc
Confidence            00   12366889999999998864

>PRK05599 hypothetical protein; Provisional

Probab=99.69  E-value=2.4e-15  Score=128.50  Aligned_cols=203  Identities=14%  Similarity=0.145  Sum_probs=137.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |+++||||++.||..++++|. +|++|++++|+.+..+.+....... ....+.++.+|+.|.+++.++++       ++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQR-GATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc-cCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            589999999999999999998 5999999999876655443222111 11347889999999988877553       68


Q ss_pred             cEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |++||+||......     .....+...+|+.+...++.+    +.+.+...++|++||....-  .             
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~--~-------------  143 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR--A-------------  143 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc--C-------------
Confidence            99999998643211     111223456677766655433    43332136899999975442  1             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                             ......|+.+|...+.+.+.++.+.   |++++.+.||.+..+.....             . +..       
T Consensus       144 -------~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~~-------------~-~~~-------  195 (246)
T PRK05599        144 -------RRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTGM-------------K-PAP-------  195 (246)
T ss_pred             -------CcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcCC-------------C-CCC-------
Confidence                   0123479999999999999988874   79999999998865421100             0 000       


Q ss_pred             ccccHHHHHHHHHHhhcCCCCCCceEE
Q 040253          227 QFVHLDDLCSAHIFLFEHPNAKGRYIC  253 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~~~~~~~~  253 (338)
                      -....+|+|++++.++.+...+..+..
T Consensus       196 ~~~~pe~~a~~~~~~~~~~~~~~~~~~  222 (246)
T PRK05599        196 MSVYPRDVAAAVVSAITSSKRSTTLWI  222 (246)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCceEEe
Confidence            024689999999999988654334433

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.69  E-value=2.2e-15  Score=129.76  Aligned_cols=208  Identities=14%  Similarity=0.118  Sum_probs=138.1

Q ss_pred             CcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+++||||++  -||.+++++|++.|++|++.+|+....+..+.+....   +.+..+.+|++|.+++.++++      
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~~   82 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKVW   82 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhhc
Confidence            58899999985  8999999999999999998888743223333332211   345678999999998887663      


Q ss_pred             -CccEEEEecccCCCC----------CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 -GCTGVFHLATPMDFE----------SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                       ++|++||+||.....          ..+..+..+++|+.+...+.+++... ....++|++||.+...           
T Consensus        83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~-----------  151 (262)
T PRK07984         83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-----------  151 (262)
T ss_pred             CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC-----------
Confidence             589999999854311          01122355688988887777765432 1125799999864321           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +.+....|+.+|.+.+.+.+.++.+.   |+++.++-||.+.-+... .... ........... ... 
T Consensus       152 -----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~-~~~~-~~~~~~~~~~~-~p~-  216 (262)
T PRK07984        152 -----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAAS-GIKD-FRKMLAHCEAV-TPI-  216 (262)
T ss_pred             -----------CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHh-cCCc-hHHHHHHHHHc-CCC-
Confidence                       00123479999999999999998874   899999999988653211 0000 00111100011 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                          ..+...+|+++++++++...
T Consensus       217 ----~r~~~pedva~~~~~L~s~~  236 (262)
T PRK07984        217 ----RRTVTIEDVGNSAAFLCSDL  236 (262)
T ss_pred             ----cCCCCHHHHHHHHHHHcCcc
Confidence                35788999999999998753

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.69  E-value=1.5e-15  Score=136.93  Aligned_cols=189  Identities=17%  Similarity=0.099  Sum_probs=126.6

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..+|+|+||||+|+||++++++|.++|++|++++|+.+.....  ....   ..++..+.+|++|.+++.+.+.++|++|
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~--~~~~---~~~v~~v~~Dvsd~~~v~~~l~~IDiLI  250 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLE--INGE---DLPVKTLHWQVGQEAALAELLEKVDILI  250 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH--Hhhc---CCCeEEEEeeCCCHHHHHHHhCCCCEEE
Confidence            3568999999999999999999999999999999876543221  1111   1246788999999999988899999999


Q ss_pred             EecccCCCC--CCCccchhhhhhhHHHHHHHHHHHhC----CC---ccEEEEecCceeeeccCCCCCCcCCCCCCchhhh
Q 040253           83 HLATPMDFE--SKDPENEVIRPTINGMVSIMRACKNA----KT---VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFV  153 (338)
Q Consensus        83 ~~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~----~~---~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~  153 (338)
                      |+||.....  ..+..++.+++|+.++.++++++...    +.   ...+|.+|++. ..                    
T Consensus       251 nnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~-~~--------------------  309 (406)
T PRK07424        251 INHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAE-VN--------------------  309 (406)
T ss_pred             ECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccc-cc--------------------
Confidence            999864321  11233578899999999999886432    10   12345555421 11                    


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHH
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDD  233 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  233 (338)
                        + .....|+.||.+.+.+......+.++.+..+.|    ||..+. +            +         ....+..+|
T Consensus       310 --~-~~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~----gp~~t~-~------------~---------~~~~~spe~  360 (406)
T PRK07424        310 --P-AFSPLYELSKRALGDLVTLRRLDAPCVVRKLIL----GPFKSN-L------------N---------PIGVMSADW  360 (406)
T ss_pred             --C-CCchHHHHHHHHHHHHHHHHHhCCCCceEEEEe----CCCcCC-C------------C---------cCCCCCHHH
Confidence              0 012369999999988764332333544444444    332211 0            0         012478899


Q ss_pred             HHHHHHHhhcCCC
Q 040253          234 LCSAHIFLFEHPN  246 (338)
Q Consensus       234 ~a~~~~~~l~~~~  246 (338)
                      +|+.++.+++++.
T Consensus       361 vA~~il~~i~~~~  373 (406)
T PRK07424        361 VAKQILKLAKRDF  373 (406)
T ss_pred             HHHHHHHHHHCCC
Confidence            9999999998754

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.69  E-value=5.5e-16  Score=131.00  Aligned_cols=167  Identities=19%  Similarity=0.128  Sum_probs=126.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhh-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPI-------   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------   75 (338)
                      .+|.|+|||||+.||.+++.+|+++|.+++.+.|..+..+.+ +.+.+.-... ++.++.+|++|.+++.+++       
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            368999999999999999999999999999999988877777 4444433322 6999999999999888654       


Q ss_pred             CCccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           76 RGCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      .++|++||+||....     ...+.....+++|+.|+..+.+++..    .+ ..++|.+||...+-             
T Consensus        90 g~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~-------------  155 (282)
T KOG1205|consen   90 GRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM-------------  155 (282)
T ss_pred             CCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc-------------
Confidence            479999999986541     11223345889999999998887643    33 47999999976552             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEE----EEcCCcee
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI----SIIPSLVV  194 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~----ilRp~~v~  194 (338)
                               +.+....|..||.+.+-+...++.++.-..+    ++-||.|-
T Consensus       156 ---------~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~  198 (282)
T KOG1205|consen  156 ---------PLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIE  198 (282)
T ss_pred             ---------CCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCcee
Confidence                     1112348999999999999999998732222    36666553

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.69  E-value=3.8e-16  Score=131.37  Aligned_cols=185  Identities=11%  Similarity=0.057  Sum_probs=135.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----CccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----GCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~v   81 (338)
                      |+++||||+|.||++++++|+++|++|++++|+.++.......       .+++.+.+|++|.+++.++++    ++|++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~v~~~~~~~~~~id~l   73 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE-------LDVDAIVCDNTDPASLEEARGLFPHHLDTI   73 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-------ccCcEEecCCCCHHHHHHHHHHHhhcCcEE
Confidence            4799999999999999999999999999999976554333221       135788999999998887764    58999


Q ss_pred             EEecccCCC-------C---CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           82 FHLATPMDF-------E---SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        82 i~~a~~~~~-------~---~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      ||+|+....       .   ..+..+..+++|+.+...+++++... ....++|++||..  .                 
T Consensus        74 v~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~--~-----------------  134 (223)
T PRK05884         74 VNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN--P-----------------  134 (223)
T ss_pred             EECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC--C-----------------
Confidence            999974210       0   12234577899999999998887542 1135899999853  0                 


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                             .+...|+.+|...+.+.+.++.++   |++++.+.||.+..+..            ... ..         ..
T Consensus       135 -------~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~------------~~~-~~---------~p  185 (223)
T PRK05884        135 -------PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY------------DGL-SR---------TP  185 (223)
T ss_pred             -------CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh------------hhc-cC---------CC
Confidence                   022479999999999999988864   79999999998854321            000 00         01


Q ss_pred             cccHHHHHHHHHHhhcCC
Q 040253          228 FVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~  245 (338)
                      .-..+|+++++.+++...
T Consensus       186 ~~~~~~ia~~~~~l~s~~  203 (223)
T PRK05884        186 PPVAAEIARLALFLTTPA  203 (223)
T ss_pred             CCCHHHHHHHHHHHcCch
Confidence            127899999999998753

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.69  E-value=3.1e-15  Score=128.84  Aligned_cols=208  Identities=15%  Similarity=0.087  Sum_probs=138.5

Q ss_pred             CcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+++||||++  -||.+++++|+++|++|++..|+....+..+.+....   .....+.+|++|++++.++++      
T Consensus         8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~---g~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (260)
T PRK06603          8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEI---GCNFVSELDVTNPKSISNLFDDIKEKW   84 (260)
T ss_pred             CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhc---CCceEEEccCCCHHHHHHHHHHHHHHc
Confidence            57899999997  7999999999999999998888643223333332211   122457899999988877663      


Q ss_pred             -CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       ++|++||+|+....         ...+.....+++|+.+...+++++... ....++|++||.....            
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------  152 (260)
T PRK06603         85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------  152 (260)
T ss_pred             CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------
Confidence             58999999985321         111234467889999988888765432 1135899999864331            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +.+....|+.+|.+.+.+.+.++.++   |++++++.||.+-.+.... ... ........... .+.  
T Consensus       153 ----------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-~~~-~~~~~~~~~~~-~p~--  217 (260)
T PRK06603        153 ----------VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSA-IGD-FSTMLKSHAAT-APL--  217 (260)
T ss_pred             ----------CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhc-CCC-cHHHHHHHHhc-CCc--
Confidence                      00123479999999999999988764   7999999999886543110 000 00000000011 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         .++...+|+++++++++...
T Consensus       218 ---~r~~~pedva~~~~~L~s~~  237 (260)
T PRK06603        218 ---KRNTTQEDVGGAAVYLFSEL  237 (260)
T ss_pred             ---CCCCCHHHHHHHHHHHhCcc
Confidence               34778999999999999753

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.68  E-value=2.6e-15  Score=129.26  Aligned_cols=212  Identities=15%  Similarity=0.097  Sum_probs=141.0

Q ss_pred             CCCC-CcEEEEeCC--chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            1 MGSI-AETVCVTGA--SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         1 m~~~-~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      |..+ .++++||||  ++-||.+++++|++.|++|++..|.....+.++.+....   +....+.+|++|++++.++++ 
T Consensus         1 ~~~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~   77 (260)
T PRK06997          1 MGFLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---GSDLVFPCDVASDEQIDALFAS   77 (260)
T ss_pred             CCccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhc---CCcceeeccCCCHHHHHHHHHH
Confidence            4443 589999996  679999999999999999998876533333343332211   123468899999998887663 


Q ss_pred             ------CccEEEEecccCCCC----------CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCC
Q 040253           77 ------GCTGVFHLATPMDFE----------SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        77 ------~~d~vi~~a~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~  139 (338)
                            ++|++||+||.....          ..+..+..+++|+.+...+.+++... ....++|++||.....      
T Consensus        78 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~------  151 (260)
T PRK06997         78 LGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER------  151 (260)
T ss_pred             HHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccccc------
Confidence                  589999999864311          11233456889999998888776543 1136899999865321      


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN  216 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  216 (338)
                                      +......|+.+|.+.+.+.+.++.++   |++++.+.||.+-.+.... ... ...........
T Consensus       152 ----------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-~~~-~~~~~~~~~~~  213 (260)
T PRK06997        152 ----------------VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-IKD-FGKILDFVESN  213 (260)
T ss_pred             ----------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc-ccc-hhhHHHHHHhc
Confidence                            00123479999999999999998874   7999999999886542111 100 00000000011


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       ...     .++...+|+++++.+++...
T Consensus       214 -~p~-----~r~~~pedva~~~~~l~s~~  236 (260)
T PRK06997        214 -APL-----RRNVTIEEVGNVAAFLLSDL  236 (260)
T ss_pred             -Ccc-----cccCCHHHHHHHHHHHhCcc
Confidence             111     35788999999999998753

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.68  E-value=5.7e-16  Score=137.05  Aligned_cols=198  Identities=16%  Similarity=0.157  Sum_probs=136.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC--CCc---hhhhC--C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE--GNF---DEPIR--G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~---~~~~~--~   77 (338)
                      ++.++||||||.||.+++++|+++|++|++++|+++..+.............++..+.+|+.+.  +.+   .+.+.  +
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~d  132 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGLD  132 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999999998776554433221111113577888999751  222   22333  3


Q ss_pred             ccEEEEecccCCC-------CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           78 CTGVFHLATPMDF-------ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        78 ~d~vi~~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      +|++||+||....       ...+..+..+++|+.++..+.+++.    +.+ ..++|++||...+.  ..         
T Consensus       133 idilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~a~~~--~~---------  200 (320)
T PLN02780        133 VGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGSGAAIV--IP---------  200 (320)
T ss_pred             ccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEechhhcc--CC---------
Confidence            6699999986421       1112234578899999998888764    334 57899999976642  00         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               ..+....|+.||...+.+.+.++.++   |++++++.||.+-.+....              ... .    
T Consensus       201 ---------~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~--------------~~~-~----  252 (320)
T PLN02780        201 ---------SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASI--------------RRS-S----  252 (320)
T ss_pred             ---------CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccc--------------cCC-C----
Confidence                     00124589999999999999988775   8999999999886543110              000 0    


Q ss_pred             CCCccccHHHHHHHHHHhhcC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~  244 (338)
                        .-....+++|+.++..+..
T Consensus       253 --~~~~~p~~~A~~~~~~~~~  271 (320)
T PLN02780        253 --FLVPSSDGYARAALRWVGY  271 (320)
T ss_pred             --CCCCCHHHHHHHHHHHhCC
Confidence              1134788899998888864

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.68  E-value=1.9e-15  Score=128.67  Aligned_cols=185  Identities=12%  Similarity=0.071  Sum_probs=124.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +++++||||+|+||++++++|+++|++|++++|+......  ....     .....+.+|++|.+++.+.+.++|++||+
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~--~~~~-----~~~~~~~~D~~~~~~~~~~~~~iDilVnn   86 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE--SNDE-----SPNEWIKWECGKEESLDKQLASLDVLILN   86 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh--hhcc-----CCCeEEEeeCCCHHHHHHhcCCCCEEEEC
Confidence            5899999999999999999999999999999997632111  1110     11257889999999888888899999999


Q ss_pred             cccCCC--CCCCccchhhhhhhHHHHHHHHHHHhCC------CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           85 ATPMDF--ESKDPENEVIRPTINGMVSIMRACKNAK------TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        85 a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      ||....  ...+.....+++|+.++.++++++...-      ....++..||.....                      +
T Consensus        87 AG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~----------------------~  144 (245)
T PRK12367         87 HGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ----------------------P  144 (245)
T ss_pred             CccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC----------------------C
Confidence            986432  1123445788999999999998764321      012343444432221                      0


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHH-------HcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccc
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAE-------ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV  229 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~-------~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  229 (338)
                       .....|+.||.+.+.+. .+++       +.++.+..+.||.+..+.     .             +        ...+
T Consensus       145 -~~~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~~t~~-----~-------------~--------~~~~  196 (245)
T PRK12367        145 -ALSPSYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPFRSEL-----N-------------P--------IGIM  196 (245)
T ss_pred             -CCCchhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCccccc-----C-------------c--------cCCC
Confidence             02236999999976433 3333       247778888886542211     0             0        1246


Q ss_pred             cHHHHHHHHHHhhcCCC
Q 040253          230 HLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~  246 (338)
                      ..+|+|+.++.++++..
T Consensus       197 ~~~~vA~~i~~~~~~~~  213 (245)
T PRK12367        197 SADFVAKQILDQANLGL  213 (245)
T ss_pred             CHHHHHHHHHHHHhcCC
Confidence            78999999999997643

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.67  E-value=3.4e-15  Score=138.83  Aligned_cols=203  Identities=17%  Similarity=0.062  Sum_probs=137.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      .++++||||+|.||..++++|.++|++|++++|.... +.+..+...    .+...+.+|++|.+++.++++       +
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~-~~l~~~~~~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG-EALAAVANR----VGGTALALDITAPDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHH----cCCeEEEEeCCCHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999999999999885322 223222211    134678899999988776653       5


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      +|+|||+|+.....     ..+..+..++.|+.++.++.+++....   ...+||++||...+.  ..            
T Consensus       285 id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~--g~------------  350 (450)
T PRK08261        285 LDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIA--GN------------  350 (450)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC--CC------------
Confidence            89999999865421     123345678899999999999886632   136899999976542  10            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                              .....|+.+|...+.+++.++.+   .|++++++.||.+-.+.. ..+........    ......     .
T Consensus       351 --------~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~-~~~~~~~~~~~----~~~~~l-----~  412 (450)
T PRK08261        351 --------RGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMT-AAIPFATREAG----RRMNSL-----Q  412 (450)
T ss_pred             --------CCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhh-hccchhHHHHH----hhcCCc-----C
Confidence                    12358999999888888877765   389999999998743211 11111000000    000011     1


Q ss_pred             ccccHHHHHHHHHHhhcC
Q 040253          227 QFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~  244 (338)
                      +....+|+++++.+++..
T Consensus       413 ~~~~p~dva~~~~~l~s~  430 (450)
T PRK08261        413 QGGLPVDVAETIAWLASP  430 (450)
T ss_pred             CCCCHHHHHHHHHHHhCh
Confidence            234567999999998864

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.67  E-value=7.8e-16  Score=124.53  Aligned_cols=165  Identities=19%  Similarity=0.189  Sum_probs=119.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++++||||+|+||.+++++|.++|. .|+++.|+......... +........++.++.+|+++.+++.+++.       
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG   80 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999985 68888887654322111 11111112467889999999887776654       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      .+|.|||+++.....     ..+..+..++.|+.++.++++++...+ .++++++||.....  ..              
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~ii~~ss~~~~~--~~--------------  143 (180)
T smart00822       81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLP-LDFFVLFSSVAGVL--GN--------------  143 (180)
T ss_pred             CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCC-cceEEEEccHHHhc--CC--------------
Confidence            479999999854311     112335678999999999999998776 78899999865432  10              


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCcee
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVV  194 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~  194 (338)
                            .....|+.+|...+.+++.+. ..+++++.+.||.+-
T Consensus       144 ------~~~~~y~~sk~~~~~~~~~~~-~~~~~~~~~~~g~~~  179 (180)
T smart00822      144 ------PGQANYAAANAFLDALAAHRR-ARGLPATSINWGAWA  179 (180)
T ss_pred             ------CCchhhHHHHHHHHHHHHHHH-hcCCceEEEeecccc
Confidence                  123479999999999986554 569999999887653

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.65  E-value=1.3e-14  Score=124.78  Aligned_cols=207  Identities=14%  Similarity=0.038  Sum_probs=136.6

Q ss_pred             CCcEEEEeCC--chhhHHHHHHHHHHCCCeEEEEEcCCC--cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            4 IAETVCVTGA--SGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         4 ~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      .+++++||||  ++-||.+++++|+++|++|++++|+..  ..+.+...  ..   .++..+.+|++|++++.++++   
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~--~~---~~~~~~~~Dv~~~~~i~~~~~~~~   80 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKR--LP---EPAPVLELDVTNEEHLASLADRVR   80 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHh--cC---CCCcEEeCCCCCHHHHHHHHHHHH
Confidence            3589999999  899999999999999999999988642  12222211  11   256789999999988776653   


Q ss_pred             ----CccEEEEecccCCCC------CC---CccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCc
Q 040253           77 ----GCTGVFHLATPMDFE------SK---DPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~------~~---~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                          ++|++||+||.....      ..   +.....+++|+.+...+.+++...- ...++|++|+....+         
T Consensus        81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~---------  151 (256)
T PRK07889         81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVA---------  151 (256)
T ss_pred             HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccccc---------
Confidence                689999999864310      11   1223468899999888877664321 125788887532110         


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAH  219 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  219 (338)
                                    .+....|+.+|...+.+.+.++.++   |++++.+.||.+-.+.... .... ....... .....
T Consensus       152 --------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~-~~~~-~~~~~~~-~~~~p  214 (256)
T PRK07889        152 --------------WPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKA-IPGF-ELLEEGW-DERAP  214 (256)
T ss_pred             --------------CCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhc-ccCc-HHHHHHH-HhcCc
Confidence                          0123468999999999999888774   8999999999887653211 0000 0000000 01011


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      +    .+.+...+|+|++++.++...
T Consensus       215 ~----~~~~~~p~evA~~v~~l~s~~  236 (256)
T PRK07889        215 L----GWDVKDPTPVARAVVALLSDW  236 (256)
T ss_pred             c----ccccCCHHHHHHHHHHHhCcc
Confidence            1    124778999999999998753

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.64  E-value=5.8e-15  Score=124.35  Aligned_cols=168  Identities=12%  Similarity=0.081  Sum_probs=119.9

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhh----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPI----   75 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----   75 (338)
                      |+..+++++||||++-||..++++|+++|++|.++.|+.+..+.... +...   ..++..+.+|+.|.+++.+++    
T Consensus         1 ~~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~---~~~~~~~~~D~~~~~~~~~~~~~~~   77 (227)
T PRK08862          1 MDIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL---TDNVYSFQLKDFSQESIRHLFDAIE   77 (227)
T ss_pred             CCCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCCeEEEEccCCCHHHHHHHHHHHH
Confidence            66667999999999999999999999999999999998766544432 2221   145778889999998887654    


Q ss_pred             ---C-CccEEEEecccCCCC---CCCc---cchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCC
Q 040253           76 ---R-GCTGVFHLATPMDFE---SKDP---ENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        76 ---~-~~d~vi~~a~~~~~~---~~~~---~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                         . ++|++||+||.....   ...+   ..+.+..|+.+...+.+.    +...+....+|++||...+.        
T Consensus        78 ~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~--------  149 (227)
T PRK08862         78 QQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDHQ--------  149 (227)
T ss_pred             HHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCCC--------
Confidence               3 689999999743211   1111   223455676666555443    33332236899999853220        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGP  196 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~  196 (338)
                                       +...|+.+|...+.+.+.++.++   |+++..|.||.+-.+
T Consensus       150 -----------------~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~  190 (227)
T PRK08862        150 -----------------DLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN  190 (227)
T ss_pred             -----------------CcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence                             23379999999999998888764   899999999987655

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.64  E-value=1.9e-14  Score=122.12  Aligned_cols=194  Identities=13%  Similarity=0.111  Sum_probs=132.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh---hCCccE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP---IRGCTG   80 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~~~~d~   80 (338)
                      |+|+||||+|+||++++++|+++|  ..|....|+....  .        ..+++.++++|++|.+++.++   +.++|+
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~--~--------~~~~~~~~~~Dls~~~~~~~~~~~~~~id~   70 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD--F--------QHDNVQWHALDVTDEAEIKQLSEQFTQLDW   70 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc--c--------ccCceEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            589999999999999999999985  5565555644321  0        115788999999998876664   347999


Q ss_pred             EEEecccCCCCCC-----------CccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           81 VFHLATPMDFESK-----------DPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        81 vi~~a~~~~~~~~-----------~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      |||+||.......           +.....+.+|+.+...+.+.+...   +...+++++||..  +....       . 
T Consensus        71 li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~--~~~~~-------~-  140 (235)
T PRK09009         71 LINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKV--GSISD-------N-  140 (235)
T ss_pred             EEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecc--ccccc-------C-
Confidence            9999997542110           112356788888888777766432   1146889988732  10000       0 


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE-----NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                               +..+...|+.+|...+.+++.++.+     .++++..+.||.+..+....     ..      ...  .  
T Consensus       141 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~-----~~------~~~--~--  196 (235)
T PRK09009        141 ---------RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP-----FQ------QNV--P--  196 (235)
T ss_pred             ---------CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc-----hh------hcc--c--
Confidence                     0113448999999999999998866     37889999999887654211     00      000  0  


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                         ...++..+|+++++..++....
T Consensus       197 ---~~~~~~~~~~a~~~~~l~~~~~  218 (235)
T PRK09009        197 ---KGKLFTPEYVAQCLLGIIANAT  218 (235)
T ss_pred             ---cCCCCCHHHHHHHHHHHHHcCC
Confidence               1346789999999999998753

>PLN00015 protochlorophyllide reductase

Probab=99.62  E-value=1.7e-14  Score=127.30  Aligned_cols=234  Identities=17%  Similarity=0.130  Sum_probs=139.7

Q ss_pred             EEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------CccE
Q 040253            9 CVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GCTG   80 (338)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d~   80 (338)
                      +||||++.||.+++++|+++| ++|++.+|+.+..........  ....++.++.+|+.|.+++.++++       ++|+
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~   78 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAG--MPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDV   78 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhc--CCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCE
Confidence            699999999999999999999 999999997655443322221  112467889999999988776653       5899


Q ss_pred             EEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHh----CCC-ccEEEEecCceeeeccC-CC-CCCcCCCC-
Q 040253           81 VFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKN----AKT-VRRLVFTSSAGTLDVEE-HR-KPVYDETS-  146 (338)
Q Consensus        81 vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~~~v~~Ss~~v~~~~~-~~-~~~~~e~~-  146 (338)
                      +||+||.....      ..+..+..+++|+.+...+.+.+..    .+. ..++|++||...+-... .. .+.....+ 
T Consensus        79 lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~  158 (308)
T PLN00015         79 LVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL  158 (308)
T ss_pred             EEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhh
Confidence            99999864211      1223456889999998887665432    220 26899999975531000 00 00000000 


Q ss_pred             ---------CCchhhhh-hccCCCchHHHHHHHHHHHHHHHHHHc----CccEEEEcCCceeCCCCCCCCChhHHHhhhh
Q 040253          147 ---------WSDLDFVR-SVKMTGWMYFVSKTLAEQAAWKFAEEN----NIDFISIIPSLVVGPFLTSSMPPSLITALSP  212 (338)
Q Consensus       147 ---------~~~~~~~~-~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  212 (338)
                               .+.....+ ....+...|+.||.+.+...+.+++++    |+.++++.||.|...................
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~~~  238 (308)
T PLN00015        159 RGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPP  238 (308)
T ss_pred             hhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHHHH
Confidence                     00000000 011234579999999777777777653    7999999999995432211111111100000


Q ss_pred             cccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCce
Q 040253          213 ITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGRY  251 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~~  251 (338)
                      ...    +..   ..+...++.|+.++.++....  ..|.|
T Consensus       239 ~~~----~~~---~~~~~pe~~a~~~~~l~~~~~~~~~G~~  272 (308)
T PLN00015        239 FQK----YIT---KGYVSEEEAGKRLAQVVSDPSLTKSGVY  272 (308)
T ss_pred             HHH----HHh---cccccHHHhhhhhhhhccccccCCCccc
Confidence            000    000   135678999999998876533  24455

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.60  E-value=5.4e-14  Score=122.39  Aligned_cols=221  Identities=18%  Similarity=0.096  Sum_probs=148.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ..++++||||++.||.++++.|+.+|.+|+..+|+.+................++.++++|+.|..++.+..+       
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~~~  113 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKKEG  113 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhcCC
Confidence            3579999999999999999999999999999999985544443333323334678899999999988876543       


Q ss_pred             CccEEEEecccCCC---CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 GCTGVFHLATPMDF---ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      ..|+.|++||.+..   ...+..+..+.+|..+...|.+.+    +... ..|+|++||..- +........-.|...  
T Consensus       114 ~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~-~~RIV~vsS~~~-~~~~~~~~l~~~~~~--  189 (314)
T KOG1208|consen  114 PLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSA-PSRIVNVSSILG-GGKIDLKDLSGEKAK--  189 (314)
T ss_pred             CccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCC-CCCEEEEcCccc-cCccchhhccchhcc--
Confidence            68999999996552   233455788999998887776654    4444 379999999653 100111111111110  


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                            .-.....|+.||.+......+++++.  |+.++.+.||.+..+.... ............ .          +.
T Consensus       190 ------~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r-~~~~~~~l~~~l-~----------~~  251 (314)
T KOG1208|consen  190 ------LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSR-VNLLLRLLAKKL-S----------WP  251 (314)
T ss_pred             ------CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceec-chHHHHHHHHHH-H----------HH
Confidence                  00112259999999999999999887  6999999999998774332 111111111100 0          11


Q ss_pred             c-ccHHHHHHHHHHhhcCCC
Q 040253          228 F-VHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       228 ~-i~v~D~a~~~~~~l~~~~  246 (338)
                      + -..++-|...+.++.++.
T Consensus       252 ~~ks~~~ga~t~~~~a~~p~  271 (314)
T KOG1208|consen  252 LTKSPEQGAATTCYAALSPE  271 (314)
T ss_pred             hccCHHHHhhheehhccCcc
Confidence            1 256777777777777664

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.59  E-value=4.8e-15  Score=118.88  Aligned_cols=151  Identities=24%  Similarity=0.217  Sum_probs=113.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHh-cCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLL-ELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      |+++||||+|-||..++++|+++| +.|+++.|+ ++.+..+.+. .++....++.++++|+++.+++.++++       
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS-EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG   79 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            689999999999999999999995 688888888 2222222221 111222689999999999988877664       


Q ss_pred             CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           77 GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      .+|++||+++......     .+.....+..|+.+...+.+++...+ ..++|++||.....                  
T Consensus        80 ~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~------------------  140 (167)
T PF00106_consen   80 PLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQG-GGKIVNISSIAGVR------------------  140 (167)
T ss_dssp             SESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHT-TEEEEEEEEGGGTS------------------
T ss_pred             cccccccccccccccccccccchhhhhccccccceeeeeeehheecc-ccceEEecchhhcc------------------
Confidence            6899999998765221     12334788999999999999888744 68999999976542                  


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHH
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEE  180 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~  180 (338)
                          +.+....|+.+|.+.+.+++.++++
T Consensus       141 ----~~~~~~~Y~askaal~~~~~~la~e  165 (167)
T PF00106_consen  141 ----GSPGMSAYSASKAALRGLTQSLAAE  165 (167)
T ss_dssp             ----SSTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCCCChhHHHHHHHHHHHHHHHHHh
Confidence                1123458999999999999998876

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.59  E-value=1.5e-13  Score=117.84  Aligned_cols=217  Identities=18%  Similarity=0.178  Sum_probs=148.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHH-hcCCCCCCcEEEEecccCCCCCchhhh-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHL-LELPKASTHLTLWKADLAEEGNFDEPI-------   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------   75 (338)
                      .+|+++||||+.-||.+++++|.+.|.+|++.+|+.+........ .......+++..+.+|+++.++..+++       
T Consensus         7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~   86 (270)
T KOG0725|consen    7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF   86 (270)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999999999988765444332 222222367899999999887666544       


Q ss_pred             -CCccEEEEecccCCC------CCCCccchhhhhhhHH-HHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCcCC
Q 040253           76 -RGCTGVFHLATPMDF------ESKDPENEVIRPTING-MVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        76 -~~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~-~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                       .++|++|++||....      ...+.++..+++|+.+ ...+..++...   +....++++||...+.  ..       
T Consensus        87 ~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~--~~-------  157 (270)
T KOG0725|consen   87 FGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVG--PG-------  157 (270)
T ss_pred             CCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEecccccc--CC-------
Confidence             369999999985442      2233456788889994 56666555432   1146788888875553  10       


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh-HHHhhhh-cccCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS-LITALSP-ITRNEAH  219 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~-~~~~~~~-~~~~~~~  219 (338)
                                 + .+...|+.+|.+.+.+.+.++.+.   |+++.++-||.+..+.....+... ....... ......+
T Consensus       158 -----------~-~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p  225 (270)
T KOG0725|consen  158 -----------P-GSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVP  225 (270)
T ss_pred             -----------C-CCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccc
Confidence                       0 111589999999999999998775   899999999999877521111111 1111110 0011111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      .     .++...+|+++.+..++....
T Consensus       226 ~-----gr~g~~~eva~~~~fla~~~a  247 (270)
T KOG0725|consen  226 L-----GRVGTPEEVAEAAAFLASDDA  247 (270)
T ss_pred             c-----CCccCHHHHHHhHHhhcCccc
Confidence            1     468889999999999887643

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.59  E-value=6.2e-14  Score=123.29  Aligned_cols=213  Identities=13%  Similarity=0.030  Sum_probs=135.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC----------cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD----------NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      +|+++||||++.||.+++++|++.|++|++++|+..          ...........  ...++..+.+|+.|++++.++
T Consensus         8 ~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~~v~~~   85 (305)
T PRK08303          8 GKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTA--AGGRGIAVQVDHLVPEQVRAL   85 (305)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHH
Confidence            589999999999999999999999999999999742          22222211111  113577899999999888776


Q ss_pred             hC-------CccEEEEec-ccCC-----C----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeee
Q 040253           75 IR-------GCTGVFHLA-TPMD-----F----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        75 ~~-------~~d~vi~~a-~~~~-----~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~  133 (338)
                      ++       ++|++||+| +...     .    ...+...+.++.|+.+...+.+++..    .+ ..++|++||.....
T Consensus        86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~-~g~IV~isS~~~~~  164 (305)
T PRK08303         86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRP-GGLVVEITDGTAEY  164 (305)
T ss_pred             HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCC-CcEEEEECCccccc
Confidence            53       589999999 6311     0    01122334567888888777665533    22 36899999854321


Q ss_pred             ccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhh
Q 040253          134 VEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITAL  210 (338)
Q Consensus       134 ~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  210 (338)
                        ...                 +......|+.+|.+...+.+.++.++   |+++..|.||.+-.+.........-....
T Consensus       165 --~~~-----------------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~  225 (305)
T PRK08303        165 --NAT-----------------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWR  225 (305)
T ss_pred             --cCc-----------------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchh
Confidence              000                 00123479999999999998888775   79999999988754321000000000000


Q ss_pred             hhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          211 SPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .. ...   .+.  ...+...+|+++++++++..+
T Consensus       226 ~~-~~~---~p~--~~~~~~peevA~~v~fL~s~~  254 (305)
T PRK08303        226 DA-LAK---EPH--FAISETPRYVGRAVAALAADP  254 (305)
T ss_pred             hh-hcc---ccc--cccCCCHHHHHHHHHHHHcCc
Confidence            00 000   000  123557899999999998764

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.54  E-value=1.5e-13  Score=116.96  Aligned_cols=198  Identities=16%  Similarity=0.074  Sum_probs=129.8

Q ss_pred             HHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----CccEEEEecccCCCCCCCcc
Q 040253           21 LIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----GCTGVFHLATPMDFESKDPE   96 (338)
Q Consensus        21 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~vi~~a~~~~~~~~~~~   96 (338)
                      ++++|+++|++|++++|+.+...             ..+++.+|++|.+++.++++    ++|+|||+||...   ..+.
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~~-------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~---~~~~   64 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGMT-------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG---TAPV   64 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchhh-------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC---CCCH
Confidence            47889999999999999865431             12567899999998888775    5899999998653   2345


Q ss_pred             chhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCC---CCCchhhh----hhccCCCchHHHHHH
Q 040253           97 NEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDET---SWSDLDFV----RSVKMTGWMYFVSKT  168 (338)
Q Consensus        97 ~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~---~~~~~~~~----~~~~~p~~~Y~~sK~  168 (338)
                      +..+++|+.++..+.+++... ....++|++||...++.  ....+..+.   ..+..+..    ..+..+...|+.+|.
T Consensus        65 ~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~  142 (241)
T PRK12428         65 ELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEW--PQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKE  142 (241)
T ss_pred             HHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcc--ccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHH
Confidence            678999999999999988653 11369999999988751  111111110   00000000    012234578999999


Q ss_pred             HHHHHHHHHH-HH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          169 LAEQAAWKFA-EE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       169 ~~E~~~~~~~-~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      +.+.+.+.++ .+   +|+++++|+||.+.++..............    ... ..+   ...+...+|+|+++++++..
T Consensus       143 a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~----~~~-~~~---~~~~~~pe~va~~~~~l~s~  214 (241)
T PRK12428        143 ALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFRSMLGQERV----DSD-AKR---MGRPATADEQAAVLVFLCSD  214 (241)
T ss_pred             HHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccchhhhhhHhh----hhc-ccc---cCCCCCHHHHHHHHHHHcCh
Confidence            9999988887 43   489999999999987743211000000000    000 000   13467889999999998864

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.53  E-value=8e-13  Score=110.94  Aligned_cols=200  Identities=12%  Similarity=0.036  Sum_probs=142.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .++.||||||++.+|+.++.+|+++|.++.+.+.+.....+........   ..+..+.+|+++.+++.+..+       
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~---g~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI---GEAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc---CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999887766554433321   268999999999988776543       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      .+|++||+||.+..     ...+..+..+++|+.+.....++.    .+.. ..++|.++|...+-              
T Consensus       114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS~aG~~--------------  178 (300)
T KOG1201|consen  114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIASVAGLF--------------  178 (300)
T ss_pred             CceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehhhhccc--------------
Confidence            69999999997651     122233568889988877765554    4434 57999999975542              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc------CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN------NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                              .......|..||.++.-..+.+..+.      |++.+.+-|+.+=- +    +.       .   +   ..+
T Consensus       179 --------g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~T-g----mf-------~---~---~~~  232 (300)
T KOG1201|consen  179 --------GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINT-G----MF-------D---G---ATP  232 (300)
T ss_pred             --------CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccc-c----cc-------C---C---CCC
Confidence                    11234589999999987777776543      68888888876531 1    11       0   1   011


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA  247 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~  247 (338)
                      ...-...+..+.+|+.+..++.....
T Consensus       233 ~~~l~P~L~p~~va~~Iv~ai~~n~~  258 (300)
T KOG1201|consen  233 FPTLAPLLEPEYVAKRIVEAILTNQA  258 (300)
T ss_pred             CccccCCCCHHHHHHHHHHHHHcCCc
Confidence            11115788999999999999987543

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.53  E-value=9.8e-14  Score=106.38  Aligned_cols=159  Identities=17%  Similarity=0.187  Sum_probs=124.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .+|..+|.||||-.|+.+++++++.+  .+|+++.|+....+.         .+..+.....|....+++...++++|+.
T Consensus        17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a---------t~k~v~q~~vDf~Kl~~~a~~~qg~dV~   87 (238)
T KOG4039|consen   17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA---------TDKVVAQVEVDFSKLSQLATNEQGPDVL   87 (238)
T ss_pred             hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc---------ccceeeeEEechHHHHHHHhhhcCCceE
Confidence            46899999999999999999999997  589999997422111         1256788888988888888889999999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      +++-|...-...  .+-++++.-.....+.+++++.| +++|+.+||..+-.                        ...-
T Consensus        88 FcaLgTTRgkaG--adgfykvDhDyvl~~A~~AKe~G-ck~fvLvSS~GAd~------------------------sSrF  140 (238)
T KOG4039|consen   88 FCALGTTRGKAG--ADGFYKVDHDYVLQLAQAAKEKG-CKTFVLVSSAGADP------------------------SSRF  140 (238)
T ss_pred             EEeecccccccc--cCceEeechHHHHHHHHHHHhCC-CeEEEEEeccCCCc------------------------ccce
Confidence            999886543222  33567777777889999999999 99999999975431                        1233


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCc-cEEEEcCCceeCCCCCCCC
Q 040253          162 MYFVSKTLAEQAAWKFAEENNI-DFISIIPSLVVGPFLTSSM  202 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~  202 (338)
                      .|.+.|...|+-+.+    .++ +++|+|||.+.|.......
T Consensus       141 lY~k~KGEvE~~v~e----L~F~~~~i~RPG~ll~~R~esr~  178 (238)
T KOG4039|consen  141 LYMKMKGEVERDVIE----LDFKHIIILRPGPLLGERTESRQ  178 (238)
T ss_pred             eeeeccchhhhhhhh----ccccEEEEecCcceecccccccc
Confidence            789999999998865    355 5889999999998755443

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.52  E-value=1.1e-12  Score=116.14  Aligned_cols=212  Identities=19%  Similarity=0.184  Sum_probs=132.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh-hhC----Cc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE-PIR----GC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~----~~   78 (338)
                      .+++|||+||||.+|+-+++.|+++|+.|.+++|+......+..   ....+.....+..|.....+... +..    ..
T Consensus        78 ~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~---~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~  154 (411)
T KOG1203|consen   78 KPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG---VFFVDLGLQNVEADVVTAIDILKKLVEAVPKGV  154 (411)
T ss_pred             CCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc---ccccccccceeeeccccccchhhhhhhhccccc
Confidence            36799999999999999999999999999999998876655432   11122455666666655444333 322    34


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      .+|+-+++..+...  +...-..+...+++++++||+..| ++|++++||.+.-.   ...     ..|        ...
T Consensus       155 ~~v~~~~ggrp~~e--d~~~p~~VD~~g~knlvdA~~~aG-vk~~vlv~si~~~~---~~~-----~~~--------~~~  215 (411)
T KOG1203|consen  155 VIVIKGAGGRPEEE--DIVTPEKVDYEGTKNLVDACKKAG-VKRVVLVGSIGGTK---FNQ-----PPN--------ILL  215 (411)
T ss_pred             eeEEecccCCCCcc--cCCCcceecHHHHHHHHHHHHHhC-CceEEEEEeecCcc---cCC-----Cch--------hhh
Confidence            46666665433221  111335688999999999999999 99999998754432   100     000        000


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAH  238 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  238 (338)
                      ....+-.+|+.+|++++    +.|++.+|+|++...-.....  ....      .......+.....--.+.-.|+|+.+
T Consensus       216 ~~~~~~~~k~~~e~~~~----~Sgl~ytiIR~g~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~i~r~~vael~  283 (411)
T KOG1203|consen  216 LNGLVLKAKLKAEKFLQ----DSGLPYTIIRPGGLEQDTGGQ--REVV------VDDEKELLTVDGGAYSISRLDVAELV  283 (411)
T ss_pred             hhhhhhHHHHhHHHHHH----hcCCCcEEEeccccccCCCCc--ceec------ccCccccccccccceeeehhhHHHHH
Confidence            02234578888888775    579999999999776322110  0000      00111111111101267788999999


Q ss_pred             HHhhcCCCCCC
Q 040253          239 IFLFEHPNAKG  249 (338)
Q Consensus       239 ~~~l~~~~~~~  249 (338)
                      +.++..+....
T Consensus       284 ~~all~~~~~~  294 (411)
T KOG1203|consen  284 AKALLNEAATF  294 (411)
T ss_pred             HHHHhhhhhcc
Confidence            99998776644

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.51  E-value=3e-13  Score=106.55  Aligned_cols=167  Identities=17%  Similarity=0.178  Sum_probs=123.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+.+||||||+..||..++++|.+.|.+|++.+|+.+........      .+.+....+|+.|.+...++++    
T Consensus         1 mk~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~------~p~~~t~v~Dv~d~~~~~~lvewLkk   74 (245)
T COG3967           1 MKTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE------NPEIHTEVCDVADRDSRRELVEWLKK   74 (245)
T ss_pred             CcccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc------CcchheeeecccchhhHHHHHHHHHh
Confidence            667788999999999999999999999999999999987765554332      2688899999999987666543    


Q ss_pred             ---CccEEEEecccCC---CC----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCc
Q 040253           77 ---GCTGVFHLATPMD---FE----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 ---~~d~vi~~a~~~~---~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                         ..+++||+||...   ..    ..+..++-+.+|+.+..+|..+...    .. ...+|.+||.-.+-  +.     
T Consensus        75 ~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~-~a~IInVSSGLafv--Pm-----  146 (245)
T COG3967          75 EYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQP-EATIINVSSGLAFV--PM-----  146 (245)
T ss_pred             hCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CceEEEeccccccC--cc-----
Confidence               5899999999654   11    1111235577899988888766533    33 56799999976663  11     


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHH---HHHcCccEEEEcCCceeCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKF---AEENNIDFISIIPSLVVGP  196 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~---~~~~~~~~~ilRp~~v~G~  196 (338)
                                     ...-.|-.+|.+..-+-..+   .+..+++++=+-|+.|--+
T Consensus       147 ---------------~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~  188 (245)
T COG3967         147 ---------------ASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT  188 (245)
T ss_pred             ---------------cccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence                           11226888998887654444   4445889998999988764

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.50  E-value=3.2e-12  Score=111.62  Aligned_cols=212  Identities=12%  Similarity=-0.007  Sum_probs=135.2

Q ss_pred             CCCCcEEEEeCC--chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhc---------CCCC--CCcEEEEeccc--C
Q 040253            2 GSIAETVCVTGA--SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE---------LPKA--STHLTLWKADL--A   66 (338)
Q Consensus         2 ~~~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---------~~~~--~~~~~~~~~Dl--~   66 (338)
                      ...+|+++||||  +.-||.++++.|.+.|.+|++ +|+.+..+....-..         ....  ......+.+|+  .
T Consensus         6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   84 (303)
T PLN02730          6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD   84 (303)
T ss_pred             CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence            345799999999  799999999999999999987 665554433321111         0100  01135678888  4


Q ss_pred             CCC------------------Cchhhh-------CCccEEEEecccCC-------CCCCCccchhhhhhhHHHHHHHHHH
Q 040253           67 EEG------------------NFDEPI-------RGCTGVFHLATPMD-------FESKDPENEVIRPTINGMVSIMRAC  114 (338)
Q Consensus        67 d~~------------------~~~~~~-------~~~d~vi~~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~  114 (338)
                      +.+                  ++.+++       .++|++||+||...       ....+.....+++|+.+...+.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~  164 (303)
T PLN02730         85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF  164 (303)
T ss_pred             ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            444                  344443       25899999996321       1222345678899999999888776


Q ss_pred             HhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC-chHHHHHHHHHHHHHHHHHHc----CccEEEE
Q 040253          115 KNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG-WMYFVSKTLAEQAAWKFAEEN----NIDFISI  188 (338)
Q Consensus       115 ~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~----~~~~~il  188 (338)
                      ...- ...++|++||.....                      +.+.. ..|+.+|.+.+.+.+.++.++    |++++.|
T Consensus       165 ~p~m~~~G~II~isS~a~~~----------------------~~p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V  222 (303)
T PLN02730        165 GPIMNPGGASISLTYIASER----------------------IIPGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTI  222 (303)
T ss_pred             HHHHhcCCEEEEEechhhcC----------------------CCCCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEE
Confidence            5431 125899999865432                      00112 269999999999999998864    6899999


Q ss_pred             cCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          189 IPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       189 Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      -||.+-.+.... .... ....... ......     .++...+|++.++++++..
T Consensus       223 ~PG~v~T~~~~~-~~~~-~~~~~~~-~~~~pl-----~r~~~peevA~~~~fLaS~  270 (303)
T PLN02730        223 SAGPLGSRAAKA-IGFI-DDMIEYS-YANAPL-----QKELTADEVGNAAAFLASP  270 (303)
T ss_pred             eeCCccCchhhc-cccc-HHHHHHH-HhcCCC-----CCCcCHHHHHHHHHHHhCc
Confidence            998886553221 1100 0000000 111111     2467889999999999864

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.50  E-value=4.4e-13  Score=112.96  Aligned_cols=163  Identities=20%  Similarity=0.197  Sum_probs=126.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +.|-|||||+-.-.|..++++|.++|+.|++-+..++..+.++....    +++...+..|+++++++.++.+       
T Consensus        28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~----s~rl~t~~LDVT~~esi~~a~~~V~~~l~  103 (322)
T KOG1610|consen   28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK----SPRLRTLQLDVTKPESVKEAAQWVKKHLG  103 (322)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc----CCcceeEeeccCCHHHHHHHHHHHHHhcc
Confidence            35779999999999999999999999999999988777777665543    3788999999999999888753       


Q ss_pred             --CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 --GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 --~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                        +.-.|||+||....      ...++....+++|+.|+..+..+....  ....|+|++||.+.-    .         
T Consensus       104 ~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR----~---------  170 (322)
T KOG1610|consen  104 EDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGR----V---------  170 (322)
T ss_pred             cccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccC----c---------
Confidence              57899999985432      222345578899999998887765321  113699999996431    1         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCc
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSL  192 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~  192 (338)
                               +.+...+|..||.+.|.+...++++   +|+++.++-||.
T Consensus       171 ---------~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~  210 (322)
T KOG1610|consen  171 ---------ALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGF  210 (322)
T ss_pred             ---------cCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCc
Confidence                     1123558999999999988888776   499999999993

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.45  E-value=2.5e-12  Score=103.05  Aligned_cols=216  Identities=18%  Similarity=0.154  Sum_probs=146.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |.-.+|++++|||.|-||..+.++|+++|-++.++.-+.++.+....+.+..+ ...+.++++|+++..+++++++    
T Consensus         1 m~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p-~~~v~F~~~DVt~~~~~~~~f~ki~~   79 (261)
T KOG4169|consen    1 MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINP-SVSVIFIKCDVTNRGDLEAAFDKILA   79 (261)
T ss_pred             CcccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCC-CceEEEEEeccccHHHHHHHHHHHHH
Confidence            45568999999999999999999999999888888777666555554444221 2578999999999988888775    


Q ss_pred             ---CccEEEEecccCCCCCCCccchhhhhhhHHHHH----HHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 ---GCTGVFHLATPMDFESKDPENEVIRPTINGMVS----IMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~----l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                         .+|++||.||...+   ++.+.++.+|+.+..+    .+.++.+.  |+-.-+|++||..-..              
T Consensus        80 ~fg~iDIlINgAGi~~d---kd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~--------------  142 (261)
T KOG4169|consen   80 TFGTIDILINGAGILDD---KDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD--------------  142 (261)
T ss_pred             HhCceEEEEcccccccc---hhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC--------------
Confidence               58999999997663   4567889999877655    34444332  3456799999854332              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHH-----HHHcCccEEEEcCCceeCCC--------CCCCCChhHHHhhhhcc
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKF-----AEENNIDFISIIPSLVVGPF--------LTSSMPPSLITALSPIT  214 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~-----~~~~~~~~~ilRp~~v~G~~--------~~~~~~~~~~~~~~~~~  214 (338)
                              |.+-...|+.||...-...+++     .++.|+++..+-||.+--.-        ........+...+..  
T Consensus       143 --------P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~~--  212 (261)
T KOG4169|consen  143 --------PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALER--  212 (261)
T ss_pred             --------ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHHH--
Confidence                    2223447888887665544442     34559999999997653210        000011111111110  


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCceEEec
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSS  255 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~  255 (338)
                                 ..-....++++.+..++|.+..+.+|.++.
T Consensus       213 -----------~~~q~~~~~a~~~v~aiE~~~NGaiw~v~~  242 (261)
T KOG4169|consen  213 -----------APKQSPACCAINIVNAIEYPKNGAIWKVDS  242 (261)
T ss_pred             -----------cccCCHHHHHHHHHHHHhhccCCcEEEEec
Confidence                       124467889999999999976677887754

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.45  E-value=6e-13  Score=105.30  Aligned_cols=161  Identities=20%  Similarity=0.167  Sum_probs=121.1

Q ss_pred             CcEEEEeCCc-hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGAS-GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGat-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .++|||||++ |.||.++++.|.++|+.|++..|+.+.-..+..-       .++...+.|+++++.+.....       
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-------~gl~~~kLDV~~~~~V~~v~~evr~~~~   79 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-------FGLKPYKLDVSKPEEVVTVSGEVRANPD   79 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-------hCCeeEEeccCChHHHHHHHHHHhhCCC
Confidence            6899999876 9999999999999999999999988776655421       468999999999998766432       


Q ss_pred             -CccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       +.|+++|+||..=     +......+..+++|+.|..+..++....  .....+|+++|..+|-               
T Consensus        80 Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v---------------  144 (289)
T KOG1209|consen   80 GKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV---------------  144 (289)
T ss_pred             CceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe---------------
Confidence             5899999998421     2223344578899998887776665421  1135899999988884               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCcee
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVV  194 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~  194 (338)
                             |-+-...|..||.+...+.+.++-+   +|++++.+-+|.|-
T Consensus       145 -------pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~  186 (289)
T KOG1209|consen  145 -------PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVA  186 (289)
T ss_pred             -------ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEeccccee
Confidence                   1113458999999998888777654   38888888777664

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.44  E-value=3.4e-12  Score=109.34  Aligned_cols=169  Identities=20%  Similarity=0.171  Sum_probs=121.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCCCCC-CcEEEEecccCC-CCCchhhhC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELPKAS-THLTLWKADLAE-EGNFDEPIR   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~-~~~~~~~~Dl~d-~~~~~~~~~   76 (338)
                      |...+++|+||||++-||..+++.|.+.|++|+++.|+...  .+.......  ... ..+.+...|+++ .+++..+++
T Consensus         1 ~~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~   78 (251)
T COG1028           1 MDLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVA   78 (251)
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHH
Confidence            45668999999999999999999999999998888887553  233332222  111 257778899998 776665543


Q ss_pred             -------CccEEEEecccCC------CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 -------GCTGVFHLATPMD------FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 -------~~d~vi~~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                             ++|++||+||...      ....+..+..+++|+.+...+.+++...-..+++|++||.... ...       
T Consensus        79 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~-------  150 (251)
T COG1028          79 AAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGP-------  150 (251)
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCC-------
Confidence                   5899999998642      1222345678899999888888754433211289999997543 111       


Q ss_pred             CCCCCchhhhhhccCC-CchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCcee
Q 040253          144 ETSWSDLDFVRSVKMT-GWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVV  194 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p-~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~  194 (338)
                                     + ...|+.||.+.+.+.+.++.+   +|++++.+-||.+-
T Consensus       151 ---------------~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~  190 (251)
T COG1028         151 ---------------PGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID  190 (251)
T ss_pred             ---------------CCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence                           1 248999999999988888855   48999999999444

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=99.44  E-value=1.6e-12  Score=104.06  Aligned_cols=215  Identities=19%  Similarity=0.156  Sum_probs=150.5

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEecc
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLAT   86 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   86 (338)
                      +.++.|+.||.|+++++...+.++.|.++.|+..+.  ...  +.+   ..+.++.+|.....-+...+.++..++-+++
T Consensus        54 ~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~--~l~--sw~---~~vswh~gnsfssn~~k~~l~g~t~v~e~~g  126 (283)
T KOG4288|consen   54 WTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQ--TLS--SWP---TYVSWHRGNSFSSNPNKLKLSGPTFVYEMMG  126 (283)
T ss_pred             HHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcc--hhh--CCC---cccchhhccccccCcchhhhcCCcccHHHhc
Confidence            578899999999999999999999999999976532  111  111   4678899999888877788888999999987


Q ss_pred             cCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHH
Q 040253           87 PMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVS  166 (338)
Q Consensus        87 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~s  166 (338)
                      ...     +...+..+|-....+-..++.+.+ +++|+|+|.. -||     -.               +--|. .|..+
T Consensus       127 gfg-----n~~~m~~ing~ani~a~kaa~~~g-v~~fvyISa~-d~~-----~~---------------~~i~r-GY~~g  178 (283)
T KOG4288|consen  127 GFG-----NIILMDRINGTANINAVKAAAKAG-VPRFVYISAH-DFG-----LP---------------PLIPR-GYIEG  178 (283)
T ss_pred             Ccc-----chHHHHHhccHhhHHHHHHHHHcC-CceEEEEEhh-hcC-----CC---------------Cccch-hhhcc
Confidence            533     233667788888888899999999 9999999963 232     01               11133 79999


Q ss_pred             HHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHH-------hhhhcccCC--CCCCCCCCCccccHHHHHHH
Q 040253          167 KTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLIT-------ALSPITRNE--AHYPIIKQGQFVHLDDLCSA  237 (338)
Q Consensus       167 K~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~i~v~D~a~~  237 (338)
                      |.++|..+..   .++.+-+++|||.+||.+.-+.+...+..       ......+..  ..+-+.-....+.++++|.+
T Consensus       179 KR~AE~Ell~---~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~a  255 (283)
T KOG4288|consen  179 KREAEAELLK---KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALA  255 (283)
T ss_pred             chHHHHHHHH---hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHH
Confidence            9999977653   46789999999999998644433222221       111111111  11222222679999999999


Q ss_pred             HHHhhcCCCCCCceEEecCCCCHHHHHHH
Q 040253          238 HIFLFEHPNAKGRYICSSHPATILELAKF  266 (338)
Q Consensus       238 ~~~~l~~~~~~~~~~~~~~~~t~~e~~~~  266 (338)
                      .+.+++.+.-.|       .+++.||.+.
T Consensus       256 al~ai~dp~f~G-------vv~i~eI~~~  277 (283)
T KOG4288|consen  256 ALKAIEDPDFKG-------VVTIEEIKKA  277 (283)
T ss_pred             HHHhccCCCcCc-------eeeHHHHHHH
Confidence            999999886444       4555555544

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.42  E-value=8.5e-13  Score=112.44  Aligned_cols=200  Identities=17%  Similarity=0.148  Sum_probs=135.7

Q ss_pred             CCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcH-HHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--------CCccE
Q 040253           12 GAS--GFIGSWLIMRLLERGYAVRATVRDPDNK-KKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--------RGCTG   80 (338)
Q Consensus        12 Gat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--------~~~d~   80 (338)
                      |++  +-||.+++++|++.|++|++.+|+.++. ..++.+....    +.+++.+|++|.+++.+++        .++|+
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~----~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~   76 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY----GAEVIQCDLSDEESVEALFDEAVERFGGRIDI   76 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT----TSEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc----CCceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence            666  9999999999999999999999987752 3333333321    2346999999998887764        46899


Q ss_pred             EEEecccCCC----CC-----CCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           81 VFHLATPMDF----ES-----KDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        81 vi~~a~~~~~----~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      +||+++....    ..     .+.....++.|+.+...+.+++...- ....+|++||.....                 
T Consensus        77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~-----------------  139 (241)
T PF13561_consen   77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR-----------------  139 (241)
T ss_dssp             EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS-----------------
T ss_pred             EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc-----------------
Confidence            9999986442    11     12334677888888888887774421 135799999875432                 


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHc----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                           +.+....|+.+|.+.+.+++.++.++    ||++.+|.||.+..+.... . .......... ....++     .
T Consensus       140 -----~~~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~-~-~~~~~~~~~~-~~~~pl-----~  206 (241)
T PF13561_consen  140 -----PMPGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER-I-PGNEEFLEEL-KKRIPL-----G  206 (241)
T ss_dssp             -----BSTTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH-H-HTHHHHHHHH-HHHSTT-----S
T ss_pred             -----cCccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc-c-ccccchhhhh-hhhhcc-----C
Confidence                 11234489999999999998888663    7999999998887543110 0 0000111111 111122     4


Q ss_pred             ccccHHHHHHHHHHhhcCC
Q 040253          227 QFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~  245 (338)
                      ++...+|+|+++++++...
T Consensus       207 r~~~~~evA~~v~fL~s~~  225 (241)
T PF13561_consen  207 RLGTPEEVANAVLFLASDA  225 (241)
T ss_dssp             SHBEHHHHHHHHHHHHSGG
T ss_pred             CCcCHHHHHHHHHHHhCcc
Confidence            5789999999999999754

...

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.42  E-value=5.4e-12  Score=106.20  Aligned_cols=207  Identities=17%  Similarity=0.132  Sum_probs=146.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      .+|+||||+.-+|..++..+..+|.+|+++.|+..+..+.....++..+...+.+..+|+.|+++.+..++       .+
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            47999999999999999999999999999999988887777766665554568899999999988877664       47


Q ss_pred             cEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHHHhC-CC---ccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRACKNA-KT---VRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~---~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |.+|||||..-     +......+..+++|..++.++..++... +.   ..+++.+||.....                
T Consensus       114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~----------------  177 (331)
T KOG1210|consen  114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML----------------  177 (331)
T ss_pred             ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc----------------
Confidence            99999998422     2222334578999999999988765432 21   23889998865542                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC-CCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA-HYPIIKQ  225 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  225 (338)
                            +....+.|..+|.+..-++..+.++   +++.++..-|+.+--|+..-..           ..+|. ..-..+.
T Consensus       178 ------~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En-----------~tkP~~t~ii~g~  240 (331)
T KOG1210|consen  178 ------GIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFEREN-----------KTKPEETKIIEGG  240 (331)
T ss_pred             ------CcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccccc-----------ccCchheeeecCC
Confidence                  1123457777777777666666555   3899999999988877632110           01111 0001111


Q ss_pred             CccccHHHHHHHHHHhhcCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .+.+.-+++|.+++.=+.+.
T Consensus       241 ss~~~~e~~a~~~~~~~~rg  260 (331)
T KOG1210|consen  241 SSVIKCEEMAKAIVKGMKRG  260 (331)
T ss_pred             CCCcCHHHHHHHHHhHHhhc
Confidence            34688899999988877664

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.41  E-value=1.1e-12  Score=106.38  Aligned_cols=159  Identities=19%  Similarity=0.227  Sum_probs=109.3

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCC-Cc---HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG-YAVRATVRDP-DN---KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~-~~---~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      +++||||+|-||..+++.|.+++ .+|+++.|+. ..   ...++.+..   ....+.++.+|++|++++.+++.     
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~---~g~~v~~~~~Dv~d~~~v~~~~~~~~~~   78 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELES---AGARVEYVQCDVTDPEAVAAALAQLRQR   78 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHH---TT-EEEEEE--TTSHHHHHHHHHTSHTT
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHh---CCCceeeeccCccCHHHHHHHHHHHHhc
Confidence            68999999999999999999997 5899999983 22   223333332   23689999999999998888764     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                        .++.|||+|+.....     ..+.....+..-+.++.+|.++..... ...||.+||.+..-  ..            
T Consensus        79 ~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~-l~~~i~~SSis~~~--G~------------  143 (181)
T PF08659_consen   79 FGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRP-LDFFILFSSISSLL--GG------------  143 (181)
T ss_dssp             SS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTT-TSEEEEEEEHHHHT--T-------------
T ss_pred             cCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCC-CCeEEEECChhHhc--cC------------
Confidence              578999999865421     112233456667888999999998877 88999999976542  11            


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCc
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSL  192 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~  192 (338)
                              .....|+.+-...+.+++.... .|.+++++.-+.
T Consensus       144 --------~gq~~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~  177 (181)
T PF08659_consen  144 --------PGQSAYAAANAFLDALARQRRS-RGLPAVSINWGA  177 (181)
T ss_dssp             --------TTBHHHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred             --------cchHhHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence                    1345899999999988876544 589988887653

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.38  E-value=1.1e-11  Score=99.42  Aligned_cols=169  Identities=21%  Similarity=0.196  Sum_probs=116.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEE-EEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRA-TVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ++.|+||||+..||..|+++|++. |-++++ ..|+++....  .+......++++++++.|+++.+++.++++      
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~--~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iV   80 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAAT--ELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIV   80 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhH--HHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhc
Confidence            467999999999999999999875 555444 4455666421  111122234899999999999888776552      


Q ss_pred             ---CccEEEEecccCC-CCC-----CCccchhhhhhhHHHHHHHHHHH----hCC----------CccEEEEecCceeee
Q 040253           77 ---GCTGVFHLATPMD-FES-----KDPENEVIRPTINGMVSIMRACK----NAK----------TVRRLVFTSSAGTLD  133 (338)
Q Consensus        77 ---~~d~vi~~a~~~~-~~~-----~~~~~~~~~~n~~~~~~l~~~~~----~~~----------~~~~~v~~Ss~~v~~  133 (338)
                         +.+++|++||... +..     .+..-+.+++|+.+...+.+++.    ...          ....+|++||...--
T Consensus        81 g~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~  160 (249)
T KOG1611|consen   81 GSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSI  160 (249)
T ss_pred             ccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeecccccc
Confidence               6899999998644 211     12244678999988888776652    111          133789898864321


Q ss_pred             ccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCcee
Q 040253          134 VEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVV  194 (338)
Q Consensus       134 ~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~  194 (338)
                        ..                 ....+...|.+||.+.-...++++-+.   ++-++.+-||+|-
T Consensus       161 --~~-----------------~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~  205 (249)
T KOG1611|consen  161 --GG-----------------FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQ  205 (249)
T ss_pred             --CC-----------------CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEE
Confidence              10                 022356799999999999998888665   6777888888874

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.35  E-value=1.9e-11  Score=95.59  Aligned_cols=203  Identities=18%  Similarity=0.212  Sum_probs=134.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      .+..+||||+.-||+++++.|...|++|.+.+++....+.....  ++.. .+-..+.+|+.++.++...++       .
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~--L~g~-~~h~aF~~DVS~a~~v~~~l~e~~k~~g~   90 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGD--LGGY-GDHSAFSCDVSKAHDVQNTLEEMEKSLGT   90 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhh--cCCC-CccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence            46789999999999999999999999999999987765544332  2221 344667899999888776543       5


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhC----C-CccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNA----K-TVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++++++|||...+     ...+.+++.+.+|+.++....+++.+.    + ..-.+|++||.  .|.-...         
T Consensus        91 psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSI--VGkiGN~---------  159 (256)
T KOG1200|consen   91 PSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSI--VGKIGNF---------  159 (256)
T ss_pred             CcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhh--hcccccc---------
Confidence            8999999996542     234566788999999998887776433    2 12389999995  3211111         


Q ss_pred             CchhhhhhccCCCchHHHHHHHHH----HHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAE----QAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E----~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                 .++.|+.+|.-.-    ...+++++ .++++..+-||.|-.|-... ++......+.   +-. +.   
T Consensus       160 -----------GQtnYAAsK~GvIgftktaArEla~-knIrvN~VlPGFI~tpMT~~-mp~~v~~ki~---~~i-Pm---  219 (256)
T KOG1200|consen  160 -----------GQTNYAASKGGVIGFTKTAARELAR-KNIRVNVVLPGFIATPMTEA-MPPKVLDKIL---GMI-PM---  219 (256)
T ss_pred             -----------cchhhhhhcCceeeeeHHHHHHHhh-cCceEeEeccccccChhhhh-cCHHHHHHHH---ccC-Cc---
Confidence                       2334555543222    22233333 38999999999997665322 2322222111   111 11   


Q ss_pred             CCCccccHHHHHHHHHHhhc
Q 040253          224 KQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~  243 (338)
                        .++-..+|+|..++++..
T Consensus       220 --gr~G~~EevA~~V~fLAS  237 (256)
T KOG1200|consen  220 --GRLGEAEEVANLVLFLAS  237 (256)
T ss_pred             --cccCCHHHHHHHHHHHhc
Confidence              457789999999998884

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.35  E-value=1.6e-12  Score=99.65  Aligned_cols=207  Identities=17%  Similarity=0.181  Sum_probs=145.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~v   81 (338)
                      ++.|++||+.-.||+.++++|.+.|.+|+++.|++.+...+-...  +   ..++.+.+|+.+-+.+.+++.   .+|.+
T Consensus         7 G~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~--p---~~I~Pi~~Dls~wea~~~~l~~v~pidgL   81 (245)
T KOG1207|consen    7 GVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET--P---SLIIPIVGDLSAWEALFKLLVPVFPIDGL   81 (245)
T ss_pred             ceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC--C---cceeeeEecccHHHHHHHhhcccCchhhh
Confidence            688999999999999999999999999999999988766654332  1   348999999988777766664   47999


Q ss_pred             EEecccCC-----CCCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           82 FHLATPMD-----FESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        82 i~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      +++||...     .-.+...+..+++|+.+..++.+..    ...+....+|.+||.+..-       ++          
T Consensus        82 VNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R-------~~----------  144 (245)
T KOG1207|consen   82 VNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR-------PL----------  144 (245)
T ss_pred             hccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc-------cc----------
Confidence            99998533     2223344567889998887777663    2233245799999965431       11          


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccc
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV  229 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  229 (338)
                           ...+.|-.+|.+.+.+.+.++-+.   .+++..+.|..++-..-...+....        +....+....-.+|.
T Consensus       145 -----~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~--------K~k~mL~riPl~rFa  211 (245)
T KOG1207|consen  145 -----DNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPD--------KKKKMLDRIPLKRFA  211 (245)
T ss_pred             -----CCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCch--------hccchhhhCchhhhh
Confidence                 234589999999999998888876   5899999999987432111111100        011111111114689


Q ss_pred             cHHHHHHHHHHhhcCCC
Q 040253          230 HLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~  246 (338)
                      -++.++.+++.++....
T Consensus       212 EV~eVVnA~lfLLSd~s  228 (245)
T KOG1207|consen  212 EVDEVVNAVLFLLSDNS  228 (245)
T ss_pred             HHHHHHhhheeeeecCc
Confidence            99999999999997644

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.33  E-value=1.7e-11  Score=131.16  Aligned_cols=169  Identities=17%  Similarity=0.171  Sum_probs=126.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCc-----------H------------------------------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDN-----------K------------------------------   42 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~-----------~------------------------------   42 (338)
                      .+++|||||+|.||..++++|+++ |++|++++|++..           .                              
T Consensus      1997 g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~~ 2076 (2582)
T TIGR02813      1997 DDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRPV 2076 (2582)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccccc
Confidence            579999999999999999999988 6999999998210           0                              


Q ss_pred             ---HHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC------CccEEEEecccCCC-----CCCCccchhhhhhhHHH
Q 040253           43 ---KKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR------GCTGVFHLATPMDF-----ESKDPENEVIRPTINGM  107 (338)
Q Consensus        43 ---~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~  107 (338)
                         ..... +.........+.++.+|++|.+++.+++.      ++|.|||+||....     ...+.....+.+|+.++
T Consensus      2077 ~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G~ 2156 (2582)
T TIGR02813      2077 LSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDGL 2156 (2582)
T ss_pred             chhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHHH
Confidence               00000 10111112468899999999998887764      58999999996432     22234456899999999


Q ss_pred             HHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-CccEE
Q 040253          108 VSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-NIDFI  186 (338)
Q Consensus       108 ~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~  186 (338)
                      .++++++.... .++||++||...+.  ..                    .....|+.+|...+.+.+.++.++ +++++
T Consensus      2157 ~~Ll~al~~~~-~~~IV~~SSvag~~--G~--------------------~gqs~YaaAkaaL~~la~~la~~~~~irV~ 2213 (2582)
T TIGR02813      2157 LSLLAALNAEN-IKLLALFSSAAGFY--GN--------------------TGQSDYAMSNDILNKAALQLKALNPSAKVM 2213 (2582)
T ss_pred             HHHHHHHHHhC-CCeEEEEechhhcC--CC--------------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence            99999998766 67899999976542  11                    134579999999999998888776 68999


Q ss_pred             EEcCCceeCC
Q 040253          187 SIIPSLVVGP  196 (338)
Q Consensus       187 ilRp~~v~G~  196 (338)
                      .+.||.+-|+
T Consensus      2214 sI~wG~wdtg 2223 (2582)
T TIGR02813      2214 SFNWGPWDGG 2223 (2582)
T ss_pred             EEECCeecCC
Confidence            9999877654

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.30  E-value=4e-10  Score=98.45  Aligned_cols=209  Identities=12%  Similarity=0.015  Sum_probs=124.6

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhc------C--CCCCC-----cEEEEecccCCC
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE------L--PKAST-----HLTLWKADLAEE   68 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~------~--~~~~~-----~~~~~~~Dl~d~   68 (338)
                      .+|+++||||+  .-||.++++.|+++|++|++.+|.+. .+.+.....      .  .....     .+..+..|+.+.
T Consensus         7 ~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~   85 (299)
T PRK06300          7 TGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPI-YKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP   85 (299)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccch-hhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence            47899999995  89999999999999999998765420 000000000      0  00000     011122333333


Q ss_pred             CC------------------chhhh-------CCccEEEEecccCC-------CCCCCccchhhhhhhHHHHHHHHHHHh
Q 040253           69 GN------------------FDEPI-------RGCTGVFHLATPMD-------FESKDPENEVIRPTINGMVSIMRACKN  116 (338)
Q Consensus        69 ~~------------------~~~~~-------~~~d~vi~~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~  116 (338)
                      +.                  +.+++       .++|++||+||...       ....+..+..+++|+.+...+.+++..
T Consensus        86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p  165 (299)
T PRK06300         86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP  165 (299)
T ss_pred             EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            21                  23333       36999999997422       111233456789999999998887754


Q ss_pred             CC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC-chHHHHHHHHHHHHHHHHHHc----CccEEEEcC
Q 040253          117 AK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG-WMYFVSKTLAEQAAWKFAEEN----NIDFISIIP  190 (338)
Q Consensus       117 ~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp  190 (338)
                      .- ...++|++||.....  ..                    +.. ..|+.+|...+.+.+.++.+.    |++++.|.|
T Consensus       166 ~m~~~G~ii~iss~~~~~--~~--------------------p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~P  223 (299)
T PRK06300        166 IMNPGGSTISLTYLASMR--AV--------------------PGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISA  223 (299)
T ss_pred             HhhcCCeEEEEeehhhcC--cC--------------------CCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe
Confidence            31 135788988754431  00                    011 269999999999999888763    799999999


Q ss_pred             CceeCCCCCCC-CChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          191 SLVVGPFLTSS-MPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       191 ~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      |.+-.+..... .........   ... ...     ..+...+|++.++++++..
T Consensus       224 G~v~T~~~~~~~~~~~~~~~~---~~~-~p~-----~r~~~peevA~~v~~L~s~  269 (299)
T PRK06300        224 GPLASRAGKAIGFIERMVDYY---QDW-APL-----PEPMEAEQVGAAAAFLVSP  269 (299)
T ss_pred             CCccChhhhcccccHHHHHHH---Hhc-CCC-----CCCcCHHHHHHHHHHHhCc
Confidence            98865432110 000100000   011 111     3467889999999998864

>PTZ00325 malate dehydrogenase; Provisional

Probab=99.28  E-value=3e-11  Score=105.67  Aligned_cols=178  Identities=15%  Similarity=0.035  Sum_probs=122.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +|+||.|+|++|.||+.++..|..++  .++..++++.......+ +..     ........+.+|+.++.++++++|+|
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~D-l~~-----~~~~~~v~~~td~~~~~~~l~gaDvV   80 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAAD-LSH-----IDTPAKVTGYADGELWEKALRGADLV   80 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccc-hhh-----cCcCceEEEecCCCchHHHhCCCCEE
Confidence            47899999999999999999998655  68999998432222211 111     01123345666767777899999999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |++||....... ...+.+..|+..+.++++++++++ ++++|+++|--+-....-....+.+..         ..+|..
T Consensus        81 VitaG~~~~~~~-tR~dll~~N~~i~~~i~~~i~~~~-~~~iviv~SNPvdv~~~~~~~~~~~~s---------g~p~~~  149 (321)
T PTZ00325         81 LICAGVPRKPGM-TRDDLFNTNAPIVRDLVAAVASSA-PKAIVGIVSNPVNSTVPIAAETLKKAG---------VYDPRK  149 (321)
T ss_pred             EECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcHHHHHHHHHhhhhhcc---------CCChhh
Confidence            999997543222 235789999999999999999999 899999999655431100000001111         224566


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                      .||.+-+..-++-..+++..++....++ +.|+|..-+
T Consensus       150 viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd  186 (321)
T PTZ00325        150 LFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG  186 (321)
T ss_pred             eeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence            7888766666777777888888888887 788887644

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.20  E-value=3e-10  Score=95.98  Aligned_cols=168  Identities=19%  Similarity=0.124  Sum_probs=122.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC----chhhhC--Ccc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN----FDEPIR--GCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~----~~~~~~--~~d   79 (338)
                      .=.+|||||..||++.+++|+++|.+|+.++|+.++.+........... -.+.++..|.++.+.    +.+.+.  ++.
T Consensus        50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-vev~~i~~Dft~~~~~ye~i~~~l~~~~Vg  128 (312)
T KOG1014|consen   50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-VEVRIIAIDFTKGDEVYEKLLEKLAGLDVG  128 (312)
T ss_pred             CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-cEEEEEEEecCCCchhHHHHHHHhcCCceE
Confidence            3478999999999999999999999999999999888777654443322 467889999998775    333333  467


Q ss_pred             EEEEecccCCCCC----CC---ccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           80 GVFHLATPMDFES----KD---PENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        80 ~vi~~a~~~~~~~----~~---~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      ++||++|...+..    +.   ..+..+.+|..++..+.+...    +.+ ..-+|++||.+..-               
T Consensus       129 ILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~-~G~IvnigS~ag~~---------------  192 (312)
T KOG1014|consen  129 ILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERK-KGIIVNIGSFAGLI---------------  192 (312)
T ss_pred             EEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCC-CceEEEeccccccc---------------
Confidence            9999999654211    11   124567778888776666543    334 56899999965442               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPF  197 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~  197 (338)
                             +.+-.+.|+.+|...+.+-..+.+++   |+.+-.+-|..|-++.
T Consensus       193 -------p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm  237 (312)
T KOG1014|consen  193 -------PTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM  237 (312)
T ss_pred             -------cChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence                   22234589999999888777777665   8888888888887654

>PLN00106 malate dehydrogenase

Probab=99.13  E-value=1.3e-10  Score=101.68  Aligned_cols=175  Identities=15%  Similarity=0.056  Sum_probs=119.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+||+|+|++|.||++++..|..++  .++..+++++.....+ ++..     ........++.+.+++.++++++|+||
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~-Dl~~-----~~~~~~i~~~~~~~d~~~~l~~aDiVV   91 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAA-DVSH-----INTPAQVRGFLGDDQLGDALKGADLVI   91 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEc-hhhh-----CCcCceEEEEeCCCCHHHHcCCCCEEE
Confidence            4699999999999999999998766  4899999876222111 1111     111223335555667888999999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      |+||....... ...+.+..|+..+.++++.+++++ ...+++++|--+-+    ..+..+...     ......+|...
T Consensus        92 itAG~~~~~g~-~R~dll~~N~~i~~~i~~~i~~~~-p~aivivvSNPvD~----~~~i~t~~~-----~~~s~~p~~~v  160 (323)
T PLN00106         92 IPAGVPRKPGM-TRDDLFNINAGIVKTLCEAVAKHC-PNALVNIISNPVNS----TVPIAAEVL-----KKAGVYDPKKL  160 (323)
T ss_pred             EeCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCCCccc----cHHHHHHHH-----HHcCCCCcceE
Confidence            99997554322 345789999999999999999999 77787777632210    000011000     00012346778


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCC
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPF  197 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~  197 (338)
                      ||.+++..+++-..+++++|++...+ -+.|+|..
T Consensus       161 iG~~~LDs~Rl~~~lA~~lgv~~~~V-~~~ViGeH  194 (323)
T PLN00106        161 FGVTTLDVVRANTFVAEKKGLDPADV-DVPVVGGH  194 (323)
T ss_pred             EEEecchHHHHHHHHHHHhCCChhhe-EEEEEEeC
Confidence            99999999999999999999988777 44566655

>PRK06720 hypothetical protein; Provisional

Probab=99.09  E-value=1.4e-09  Score=86.82  Aligned_cols=83  Identities=19%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhh-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPI-------   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------   75 (338)
                      .+++++||||+|.||..+++.|.+.|++|.+++|+.+..... ..+...   ...+.++.+|+++.+++.+++       
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~v~~~~~~~   91 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL---GGEALFVSYDMEKQGDWQRVISITLNAF   91 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            468899999999999999999999999999999876544332 222211   145678899999988777654       


Q ss_pred             CCccEEEEecccCC
Q 040253           76 RGCTGVFHLATPMD   89 (338)
Q Consensus        76 ~~~d~vi~~a~~~~   89 (338)
                      .++|++||+||...
T Consensus        92 G~iDilVnnAG~~~  105 (169)
T PRK06720         92 SRIDMLFQNAGLYK  105 (169)
T ss_pred             CCCCEEEECCCcCC
Confidence            36999999998543

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.06  E-value=8.8e-10  Score=88.46  Aligned_cols=103  Identities=16%  Similarity=0.216  Sum_probs=76.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |+++|||||||+|. +++.|.+.|++|.+++|+++....+......   ..++..+.+|+.|.+++.++++       ++
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~---~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~i   76 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTT---PESITPLPLDYHDDDALKLAIKSTIEKNGPF   76 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhc---CCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            58999999999886 9999999999999999986554443321111   1468889999999998887764       45


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCcc----EEEEecCce
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR----RLVFTSSAG  130 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~v~~Ss~~  130 (338)
                      |.+|+.+-                 +.+..++.++|++.+ ++    +|+|+=++.
T Consensus        77 d~lv~~vh-----------------~~~~~~~~~~~~~~g-v~~~~~~~~h~~gs~  114 (177)
T PRK08309         77 DLAVAWIH-----------------SSAKDALSVVCRELD-GSSETYRLFHVLGSA  114 (177)
T ss_pred             eEEEEecc-----------------ccchhhHHHHHHHHc-cCCCCceEEEEeCCc
Confidence            67765543                 223578899999988 77    898876443

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.97  E-value=7.3e-09  Score=91.38  Aligned_cols=178  Identities=9%  Similarity=0.040  Sum_probs=104.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-------CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-------YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      +.+|+||||+|+||++++..|+..+       .++.++++++.. +..... ..... .-......|+....++.+++++
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~~g~-~~Dl~-d~~~~~~~~~~~~~~~~~~l~~   78 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KALEGV-VMELQ-DCAFPLLKSVVATTDPEEAFKD   78 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccccce-eeehh-hccccccCCceecCCHHHHhCC
Confidence            4689999999999999999998854       589999986532 111000 00000 0000122344445667788899


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      +|+|||+||.......+ ..+.++.|+.....+...+.++. +...+|.+|...-     .......+...        .
T Consensus        79 aDiVI~tAG~~~~~~~~-R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD-----~~t~~~~k~~~--------~  144 (325)
T cd01336          79 VDVAILVGAMPRKEGME-RKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN-----TNALILLKYAP--------S  144 (325)
T ss_pred             CCEEEEeCCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH-----HHHHHHHHHcC--------C
Confidence            99999999976543333 35789999999999998888874 2445666664210     00000111100        0


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                      .++...=+.+.+..-++-..+++..+++...++-..|+|..-.
T Consensus       145 ~~~~~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~  187 (325)
T cd01336         145 IPKENFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS  187 (325)
T ss_pred             CCHHHEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC
Confidence            0011111123344445555556667888777777777786533

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.91  E-value=1.9e-08  Score=88.52  Aligned_cols=171  Identities=9%  Similarity=0.050  Sum_probs=114.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-------eEEEEEcCCCc----HHHHHHHhcCCCCCCcEEEEecccCCCCCchh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-------AVRATVRDPDN----KKKVKHLLELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      ++||.|+|++|.||++++..|+..|.       ++..++++...    ...++-.........++++.       ....+
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-------~~~~~   74 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-------DDPNV   74 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-------cCcHH
Confidence            47999999999999999999998763       68888874322    11111111100000112211       12246


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCC-ccEEEEecCce---eeeccCCCCCCcCCCCCCc
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT-VRRLVFTSSAG---TLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~Ss~~---v~~~~~~~~~~~~e~~~~~  149 (338)
                      .++++|+||.+||.......+ -.+.+..|+.....+.+.+.++.+ -..+|.+|...   +|-       .....    
T Consensus        75 ~~~daDivvitaG~~~k~g~t-R~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~-------~~k~s----  142 (322)
T cd01338          75 AFKDADWALLVGAKPRGPGME-RADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI-------AMKNA----  142 (322)
T ss_pred             HhCCCCEEEEeCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH-------HHHHc----
Confidence            778999999999975543333 347899999999999999988872 45677666421   110       00000    


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                           +-.++...||.+++..+++...+++.+|++...+|..+|||+...
T Consensus       143 -----g~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~  187 (322)
T cd01338         143 -----PDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP  187 (322)
T ss_pred             -----CCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc
Confidence                 002345689999999999999999999999999999999998743

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.90  E-value=5.8e-09  Score=92.58  Aligned_cols=98  Identities=23%  Similarity=0.309  Sum_probs=80.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ||+|+|+|+ |+||+.++..|+++| .+|++.+|+.++..+......     ++++.++.|..|.+++.+++++.|+||+
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn   74 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVIN   74 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEE
Confidence            589999997 999999999999998 899999999888777654322     4789999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      ++.+..                 ...++++|.+.+  ..++=+|
T Consensus        75 ~~p~~~-----------------~~~i~ka~i~~g--v~yvDts   99 (389)
T COG1748          75 AAPPFV-----------------DLTILKACIKTG--VDYVDTS   99 (389)
T ss_pred             eCCchh-----------------hHHHHHHHHHhC--CCEEEcc
Confidence            997411                 246888888887  3455443

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.88  E-value=4.9e-09  Score=84.43  Aligned_cols=207  Identities=17%  Similarity=0.122  Sum_probs=127.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      .+.|||||++--||.-++..+.+.+.+.....++....+ .+.+.-  ..........+|++....+.++.+       +
T Consensus         6 r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~-~~~L~v--~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gk   82 (253)
T KOG1204|consen    6 RKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE-LEGLKV--AYGDDFVHVVGDITEEQLLGALREAPRKKGGK   82 (253)
T ss_pred             ceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc-ccceEE--EecCCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence            467899999999999999999888765544444332221 110000  000122233344444333333322       5


Q ss_pred             ccEEEEecccCCC--------CCCCccchhhhhhhHHHHHHHHHHHhC--CC--ccEEEEecCceeeeccCCCCCCcCCC
Q 040253           78 CTGVFHLATPMDF--------ESKDPENEVIRPTINGMVSIMRACKNA--KT--VRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        78 ~d~vi~~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~--~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      -|.|||+||....        ...+.++.+++.|+.+...|...+...  +.  .+-+|++||....-            
T Consensus        83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~------------  150 (253)
T KOG1204|consen   83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR------------  150 (253)
T ss_pred             eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc------------
Confidence            7999999985441        122345678999999998887765432  11  36799999976542            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCC-----CCCCCChhHHHhhhhcccCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPF-----LTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~-----~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                |-.....|..+|.+-+.+++.++.+.  ++++..++||.+--+.     ++..+......+.+.....  
T Consensus       151 ----------p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~--  218 (253)
T KOG1204|consen  151 ----------PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKES--  218 (253)
T ss_pred             ----------cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhc--
Confidence                      11234489999999999999988765  7899999998875331     1111222222222222222  


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                             .+.+.-.+.++.+..++++.
T Consensus       219 -------~~ll~~~~~a~~l~~L~e~~  238 (253)
T KOG1204|consen  219 -------GQLLDPQVTAKVLAKLLEKG  238 (253)
T ss_pred             -------CCcCChhhHHHHHHHHHHhc
Confidence                   24667778888888888875

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.88  E-value=4.3e-09  Score=80.81  Aligned_cols=210  Identities=19%  Similarity=0.230  Sum_probs=135.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +-..+||||.+-+|...+++|..+|..|..++.-.++.........     .++.+...|+++..++..++.       +
T Consensus         9 glvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg-----~~~vf~padvtsekdv~aala~ak~kfgr   83 (260)
T KOG1199|consen    9 GLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELG-----GKVVFTPADVTSEKDVRAALAKAKAKFGR   83 (260)
T ss_pred             CeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhC-----CceEEeccccCcHHHHHHHHHHHHhhccc
Confidence            4568899999999999999999999999999885555444333222     578999999999998887763       5


Q ss_pred             ccEEEEecccCC-----------CCCCCccchhhhhhhHHHHHHHHHHH----h-----CCCccEEEEecCceeeeccCC
Q 040253           78 CTGVFHLATPMD-----------FESKDPENEVIRPTINGMVSIMRACK----N-----AKTVRRLVFTSSAGTLDVEEH  137 (338)
Q Consensus        78 ~d~vi~~a~~~~-----------~~~~~~~~~~~~~n~~~~~~l~~~~~----~-----~~~~~~~v~~Ss~~v~~~~~~  137 (338)
                      .|+.+||||..-           ....++.+..+++|+.++.|+++.-.    +     .+....+|..-|...|.  ..
T Consensus        84 ld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd--gq  161 (260)
T KOG1199|consen   84 LDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD--GQ  161 (260)
T ss_pred             eeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec--Cc
Confidence            899999997421           11223345678889999999876532    1     12123455555555553  21


Q ss_pred             CCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcc
Q 040253          138 RKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPIT  214 (338)
Q Consensus       138 ~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  214 (338)
                                          .....|..||...--+..-.+++.   |+++..+-||.+--|-.. ..+.-...++.   
T Consensus       162 --------------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tplls-slpekv~~fla---  217 (260)
T KOG1199|consen  162 --------------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTPLLS-SLPEKVKSFLA---  217 (260)
T ss_pred             --------------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCChhhh-hhhHHHHHHHH---
Confidence                                134478888876554444444443   899999998876444321 22322333222   


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCc
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGR  250 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~  250 (338)
                       +..+++    -+.-+....+..+..+++++-.+|.
T Consensus       218 -~~ipfp----srlg~p~eyahlvqaiienp~lnge  248 (260)
T KOG1199|consen  218 -QLIPFP----SRLGHPHEYAHLVQAIIENPYLNGE  248 (260)
T ss_pred             -HhCCCc----hhcCChHHHHHHHHHHHhCcccCCe
Confidence             222221    1245666777788888888876663

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=98.71  E-value=1.3e-07  Score=77.34  Aligned_cols=180  Identities=19%  Similarity=0.179  Sum_probs=119.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-----CeEEEEEcCCCcHHHH-HHHhc-CCCCCCcEEEEecccCCCCCchhhh-
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-----YAVRATVRDPDNKKKV-KHLLE-LPKASTHLTLWKADLAEEGNFDEPI-   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~-   75 (338)
                      +.|.++|||+++.+|.+++.+|++..     .++...+|+.++.+.. ..+.. .|...-.++++..|+++..++.++. 
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            35779999999999999999999863     3567778887776554 22322 2322347889999999887766654 


Q ss_pred             ------CCccEEEEecccCCCC--------------------------------CCCccchhhhhhhHHHHHHHHHHHhC
Q 040253           76 ------RGCTGVFHLATPMDFE--------------------------------SKDPENEVIRPTINGMVSIMRACKNA  117 (338)
Q Consensus        76 ------~~~d~vi~~a~~~~~~--------------------------------~~~~~~~~~~~n~~~~~~l~~~~~~~  117 (338)
                            +..|.|+-+||.+...                                ..+...+.++.||-|..-+++.+...
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence                  4789999999855421                                22334567888998887776554332


Q ss_pred             ---CCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCC
Q 040253          118 ---KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPS  191 (338)
Q Consensus       118 ---~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~  191 (338)
                         +..+++|.+||...-      ...++=++..       ......+|..||.+.+.+-....+..   |+.-.++-||
T Consensus       162 l~~~~~~~lvwtSS~~a~------kk~lsleD~q-------~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg  228 (341)
T KOG1478|consen  162 LCHSDNPQLVWTSSRMAR------KKNLSLEDFQ-------HSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPG  228 (341)
T ss_pred             hhcCCCCeEEEEeecccc------cccCCHHHHh-------hhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCc
Confidence               224589999986432      1222212111       11245589999999997766655543   6777788887


Q ss_pred             ceeCC
Q 040253          192 LVVGP  196 (338)
Q Consensus       192 ~v~G~  196 (338)
                      .....
T Consensus       229 ~~tt~  233 (341)
T KOG1478|consen  229 IFTTN  233 (341)
T ss_pred             eeecc
Confidence            66543

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=98.64  E-value=1e-06  Score=78.20  Aligned_cols=82  Identities=13%  Similarity=0.029  Sum_probs=59.7

Q ss_pred             CcEEEEeCCchhhHHH--HHHHHHHCCCeEEEEEcCCCcHH------------HHHHHhcCCCCCCcEEEEecccCCCCC
Q 040253            5 AETVCVTGASGFIGSW--LIMRLLERGYAVRATVRDPDNKK------------KVKHLLELPKASTHLTLWKADLAEEGN   70 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~Dl~d~~~   70 (338)
                      +|++|||||++-+|.+  +++.| +.|.+|.++++..+...            ........  ....+..+.+|+++.++
T Consensus        41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~--~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKA--AGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHh--cCCceEEEEcCCCCHHH
Confidence            5899999999999999  89999 99999988886432111            12222211  11346778999999888


Q ss_pred             chhhhC-------CccEEEEecccCC
Q 040253           71 FDEPIR-------GCTGVFHLATPMD   89 (338)
Q Consensus        71 ~~~~~~-------~~d~vi~~a~~~~   89 (338)
                      +.++++       ++|++||++|...
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~~  143 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASPR  143 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccCC
Confidence            776653       6999999998653

>PRK05086 malate dehydrogenase; Provisional

Probab=98.63  E-value=3.9e-07  Score=80.06  Aligned_cols=115  Identities=15%  Similarity=0.086  Sum_probs=78.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHH-C--CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLE-R--GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~-~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |||+|+||+|.+|++++..|.. .  ++++.+++|++......-++...    +....+.+  .+.+++.+.++++|+||
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~----~~~~~i~~--~~~~d~~~~l~~~DiVI   74 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHI----PTAVKIKG--FSGEDPTPALEGADVVL   74 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcC----CCCceEEE--eCCCCHHHHcCCCCEEE
Confidence            6999999999999999998855 2  46788888864321100111100    11122233  23455567778999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .++|.......+ ..+.+..|+..+..+++++++++ .+++|.+.|
T Consensus        75 itaG~~~~~~~~-R~dll~~N~~i~~~ii~~i~~~~-~~~ivivvs  118 (312)
T PRK05086         75 ISAGVARKPGMD-RSDLFNVNAGIVKNLVEKVAKTC-PKACIGIIT  118 (312)
T ss_pred             EcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcc
Confidence            999975543333 34789999999999999999998 677776665

>cd00704 MDH Malate dehydrogenase

Probab=98.62  E-value=4.4e-07  Score=79.95  Aligned_cols=165  Identities=11%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC-------CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-----------
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG-------YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-----------   68 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-----------   68 (338)
                      ||.|+||+|.+|++++..|...|       +++..++++...              +..+....|+.|.           
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~--------------~~~~g~~~Dl~d~~~~~~~~~~i~   67 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM--------------KALEGVVMELQDCAFPLLKGVVIT   67 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc--------------CccceeeeehhhhcccccCCcEEe
Confidence            79999999999999999998765       258888886521              1123344455544           


Q ss_pred             CCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           69 GNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        69 ~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ....+.++++|+|||+||.......+ -.+.+..|+...+.+...+.++ ++-..+|.+|...-.     .....-+.. 
T Consensus        68 ~~~~~~~~~aDiVVitAG~~~~~g~t-R~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~-----~t~~~~k~s-  140 (323)
T cd00704          68 TDPEEAFKDVDVAILVGAFPRKPGME-RADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT-----NALIALKNA-  140 (323)
T ss_pred             cChHHHhCCCCEEEEeCCCCCCcCCc-HHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH-----HHHHHHHHc-
Confidence            34557788999999999975543333 3478999999999999999888 345566666642100     000000000 


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                             ..-++....+.+.+..-++-..+++..+++...+.-..|+|..-.
T Consensus       141 -------g~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~  185 (323)
T cd00704         141 -------PNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN  185 (323)
T ss_pred             -------CCCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecccC
Confidence                   000122223445555556555666666776555555567776433

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=98.61  E-value=6e-06  Score=67.01  Aligned_cols=208  Identities=14%  Similarity=0.109  Sum_probs=126.7

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|++||+|-.  --|+..+++.|.++|.++.....++.-.+..+++.+..   ....++++|+++.+++.++|.     
T Consensus         5 ~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~---~s~~v~~cDV~~d~~i~~~f~~i~~~   81 (259)
T COG0623           5 EGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEEL---GSDLVLPCDVTNDESIDALFATIKKK   81 (259)
T ss_pred             CCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhc---cCCeEEecCCCCHHHHHHHHHHHHHh
Confidence            47999999976  67999999999999999888887765555555544321   234678999999988887764     


Q ss_pred             --CccEEEEecccCCCC---------CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMDFE---------SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        +.|.++|+.+..+..         ..+.....+++...+...+.++++..- .-..+|-+|    |.   ....    
T Consensus        82 ~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt----Yl---gs~r----  150 (259)
T COG0623          82 WGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT----YL---GSER----  150 (259)
T ss_pred             hCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE----ec---ccee----
Confidence              699999999865511         112222334444444555555554321 112333222    32   1111    


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 ..+..+.-|.+|.+.|-.++.++.+.   |+++..+-.|.+=--... .+.. +..++.. .....++ 
T Consensus       151 -----------~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAas-gI~~-f~~~l~~-~e~~aPl-  215 (259)
T COG0623         151 -----------VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAAS-GIGD-FRKMLKE-NEANAPL-  215 (259)
T ss_pred             -----------ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhh-cccc-HHHHHHH-HHhhCCc-
Confidence                       11234567999999999999999886   677777766443211100 0111 1222211 1111122 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                          ++.+.++||+...+.++..
T Consensus       216 ----~r~vt~eeVG~tA~fLlSd  234 (259)
T COG0623         216 ----RRNVTIEEVGNTAAFLLSD  234 (259)
T ss_pred             ----cCCCCHHHhhhhHHHHhcc
Confidence                5677899999999888864

>PRK09620 hypothetical protein; Provisional

Probab=98.58  E-value=6.3e-08  Score=80.90  Aligned_cols=82  Identities=17%  Similarity=0.193  Sum_probs=56.1

Q ss_pred             CCcEEEEeCCc----------------hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            4 IAETVCVTGAS----------------GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGat----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      .+|+||||+|.                ||+|++++++|+++|++|+++++.......     ..+ ....+..+.++...
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~-----~~~-~~~~~~~V~s~~d~   75 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN-----DIN-NQLELHPFEGIIDL   75 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc-----ccC-CceeEEEEecHHHH
Confidence            46899999886                999999999999999999988763211100     000 01234456663333


Q ss_pred             CCCchhhhC--CccEEEEecccCCCC
Q 040253           68 EGNFDEPIR--GCTGVFHLATPMDFE   91 (338)
Q Consensus        68 ~~~~~~~~~--~~d~vi~~a~~~~~~   91 (338)
                      .+.+.+++.  ++|+|||+||...+.
T Consensus        76 ~~~l~~~~~~~~~D~VIH~AAvsD~~  101 (229)
T PRK09620         76 QDKMKSIITHEKVDAVIMAAAGSDWV  101 (229)
T ss_pred             HHHHHHHhcccCCCEEEECcccccee
Confidence            456667774  689999999976543

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.53  E-value=1e-06  Score=77.74  Aligned_cols=165  Identities=13%  Similarity=0.074  Sum_probs=102.4

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCC-------eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC----------
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGY-------AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG----------   69 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~----------   69 (338)
                      +|.|+|++|.||++++..|...+.       ++..+++++..              +..+-...|+.|..          
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~--------------~~a~g~~~Dl~d~~~~~~~~~~~~   66 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM--------------KVLEGVVMELMDCAFPLLDGVVPT   66 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc--------------cccceeEeehhcccchhcCceecc
Confidence            589999999999999999987542       58888886442              11244455665544          


Q ss_pred             -CchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           70 -NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        70 -~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                       ...+.++++|+||++||....... ...+.+..|+...+.+.+.+.++ ++...+|.+|...-.     .....-+.. 
T Consensus        67 ~~~~~~~~~aDiVVitAG~~~~~~~-tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv-----~t~v~~~~s-  139 (324)
T TIGR01758        67 HDPAVAFTDVDVAILVGAFPRKEGM-ERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT-----NALVLSNYA-  139 (324)
T ss_pred             CChHHHhCCCCEEEEcCCCCCCCCC-cHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH-----HHHHHHHHc-
Confidence             345678899999999997543322 23578999999999999999887 344567766642100     000000000 


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                             ...++...=.-+.+..-++-..+++..+++...++-..|+|..-.
T Consensus       140 -------g~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~  184 (324)
T TIGR01758       140 -------PSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS  184 (324)
T ss_pred             -------CCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCC
Confidence                   000011111222344445555556667888777777778887543

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.49  E-value=2.1e-06  Score=66.27  Aligned_cols=115  Identities=13%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHH-HHHhcCC-CCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKV-KHLLELP-KASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |||.|+|++|.+|++++-.|...+  .++..++++....... .++.... ....+......       ..+.++++|+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~-------~~~~~~~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG-------DYEALKDADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES-------SGGGGTTESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccc-------cccccccccEE
Confidence            689999999999999999999886  5799999875433221 1111110 00012222222       23567789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |-+||.......+ ..++++.|+...+.+.+.+.+.++...++.+|.
T Consensus        74 vitag~~~~~g~s-R~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN  119 (141)
T PF00056_consen   74 VITAGVPRKPGMS-RLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN  119 (141)
T ss_dssp             EETTSTSSSTTSS-HHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred             EEecccccccccc-HHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence            9999865533333 347889999999999999998874456666653

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.46  E-value=4.9e-07  Score=82.53  Aligned_cols=95  Identities=28%  Similarity=0.449  Sum_probs=70.0

Q ss_pred             EEEeCCchhhHHHHHHHHHHCC-C-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            8 VCVTGASGFIGSWLIMRLLERG-Y-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|.|| |++|+.+++.|++.+ . +|.+.+|+.++...+....    ...+++.++.|+.|.+++.+++++.|+||||+
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            789999 999999999999886 4 8999999887765543211    12689999999999999999999999999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEe
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT  126 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  126 (338)
                      ++..                 ...++++|.+.+  .++|-.
T Consensus        76 gp~~-----------------~~~v~~~~i~~g--~~yvD~   97 (386)
T PF03435_consen   76 GPFF-----------------GEPVARACIEAG--VHYVDT   97 (386)
T ss_dssp             SGGG-----------------HHHHHHHHHHHT---EEEES
T ss_pred             ccch-----------------hHHHHHHHHHhC--CCeecc
Confidence            8520                 346778888777  356553

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.46  E-value=2e-07  Score=78.14  Aligned_cols=68  Identities=15%  Similarity=0.246  Sum_probs=47.1

Q ss_pred             CchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC--CCCchhhhCCccEEEEecccCC
Q 040253           13 ASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE--EGNFDEPIRGCTGVFHLATPMD   89 (338)
Q Consensus        13 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~d~vi~~a~~~~   89 (338)
                      +|||+|++++++|+++|++|+++.|......       .+  ..+++++..+..+  .+.+.+.+.++|+|||+||...
T Consensus        24 SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~-------~~--~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd   93 (229)
T PRK06732         24 STGQLGKIIAETFLAAGHEVTLVTTKTAVKP-------EP--HPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD   93 (229)
T ss_pred             cchHHHHHHHHHHHhCCCEEEEEECcccccC-------CC--CCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence            3899999999999999999999987532110       00  1356666543322  2345556678999999999755

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.43  E-value=5.4e-07  Score=73.93  Aligned_cols=80  Identities=20%  Similarity=0.232  Sum_probs=61.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++++|+||+|.+|+.+++.|.+.|++|++++|+.++...+.......   .+.+....|..+.+++.++++++|+||+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRAR---FGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhh---cCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            4589999999999999999999999999999999865544443221100   1344556777788888888899999998


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.+
T Consensus       104 at~  106 (194)
T cd01078         104 AGA  106 (194)
T ss_pred             CCC
Confidence            765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=98.41  E-value=8.2e-07  Score=75.35  Aligned_cols=95  Identities=13%  Similarity=0.115  Sum_probs=70.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |+|||+||||. |+.+++.|.+.|++|++..++......+..        .+...+..+..|.+.+.+.++  ++|+||+
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~--------~g~~~v~~g~l~~~~l~~~l~~~~i~~VID   71 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI--------HQALTVHTGALDPQELREFLKRHSIDILVD   71 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc--------cCCceEEECCCCHHHHHHHHHhcCCCEEEE
Confidence            58999999999 999999999999999999998765443321        122344556667777877775  6999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEE
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV  124 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v  124 (338)
                      .+.+        ..      ...+.++.++|++.+ ++.+=
T Consensus        72 AtHP--------fA------~~is~~a~~a~~~~~-ipylR   97 (256)
T TIGR00715        72 ATHP--------FA------AQITTNATAVCKELG-IPYVR   97 (256)
T ss_pred             cCCH--------HH------HHHHHHHHHHHHHhC-CcEEE
Confidence            8753        11      234678899999998 76444

This enzyme was found to be a monomer by gel filtration.

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.32  E-value=9.3e-07  Score=77.76  Aligned_cols=72  Identities=22%  Similarity=0.261  Sum_probs=52.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-C-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-G-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ..++|+||||+|+||++++++|.++ | .+++++.|+......+..           ++..+++.   ++.+++.++|+|
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~-----------el~~~~i~---~l~~~l~~aDiV  219 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQA-----------ELGGGKIL---SLEEALPEADIV  219 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHH-----------HhccccHH---hHHHHHccCCEE
Confidence            4689999999999999999999864 5 689999887655444322           11123333   355788899999


Q ss_pred             EEecccCC
Q 040253           82 FHLATPMD   89 (338)
Q Consensus        82 i~~a~~~~   89 (338)
                      ||+++...
T Consensus       220 v~~ts~~~  227 (340)
T PRK14982        220 VWVASMPK  227 (340)
T ss_pred             EECCcCCc
Confidence            99998643

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=98.24  E-value=5e-06  Score=72.69  Aligned_cols=167  Identities=14%  Similarity=0.016  Sum_probs=102.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      |||.|+|++|.+|++++-.|...+  .++..++++......+ ++....   ....+...  ...+++.+.++++|+||-
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~al-DL~~~~---~~~~i~~~--~~~~~~y~~~~daDivvi   74 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAA-DLSHIN---TPAKVTGY--LGPEELKKALKGADVVVI   74 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeeh-HhHhCC---CcceEEEe--cCCCchHHhcCCCCEEEE
Confidence            589999999999999999998887  5788888772121111 111100   11111110  012335577889999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce-------eeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG-------TLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~-------v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      +||.......+. .+.++.|+.....+.+.+.++++-..+|.+|...       .|..       .....          
T Consensus        75 taG~~~k~g~tR-~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~-------~~~s~----------  136 (310)
T cd01337          75 PAGVPRKPGMTR-DDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVL-------KKAGV----------  136 (310)
T ss_pred             eCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHH-------HHhcC----------
Confidence            999755433343 4789999999999999998887556777776543       1110       00000          


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCC
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPF  197 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~  197 (338)
                      -++....|..-+-.-++-..+++..|++..-++ +.++|..
T Consensus       137 ~p~~rviG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH  176 (310)
T cd01337         137 YDPKRLFGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH  176 (310)
T ss_pred             CCHHHEEeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence            011123344334445566666677787766676 7778876

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.19  E-value=4.6e-06  Score=71.84  Aligned_cols=90  Identities=22%  Similarity=0.358  Sum_probs=68.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHH----CCCeEEEEEcCCCcHHHHHHHhcCCCC--CCcEEEEecccCCCCCchhh
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLE----RGYAVRATVRDPDNKKKVKHLLELPKA--STHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      |+...-.++|.|||||-|..+++.+++    .|...-+..|++.+....-.....+..  -+...++.+|..|++++.+.
T Consensus         1 M~~~~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~em   80 (423)
T KOG2733|consen    1 MAAIRYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEM   80 (423)
T ss_pred             CCCceeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHH
Confidence            444445689999999999999999998    578888899998775544332222111  12333889999999999999


Q ss_pred             hCCccEEEEecccCCC
Q 040253           75 IRGCTGVFHLATPMDF   90 (338)
Q Consensus        75 ~~~~d~vi~~a~~~~~   90 (338)
                      .+.+-+|+||+|+...
T Consensus        81 ak~~~vivN~vGPyR~   96 (423)
T KOG2733|consen   81 AKQARVIVNCVGPYRF   96 (423)
T ss_pred             HhhhEEEEecccccee
Confidence            9999999999997663

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.17  E-value=3.3e-06  Score=76.45  Aligned_cols=74  Identities=18%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             CCcEEEEeCC----------------chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            4 IAETVCVTGA----------------SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      .+++|+||||                +|.+|.+++++|.++|++|++++++....        .+   .+  ....|+++
T Consensus       187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~--------~~---~~--~~~~dv~~  253 (399)
T PRK05579        187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP--------TP---AG--VKRIDVES  253 (399)
T ss_pred             CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc--------CC---CC--cEEEccCC
Confidence            3689999999                99999999999999999999998764211        01   12  33568888


Q ss_pred             CCCchhhh----CCccEEEEecccCCC
Q 040253           68 EGNFDEPI----RGCTGVFHLATPMDF   90 (338)
Q Consensus        68 ~~~~~~~~----~~~d~vi~~a~~~~~   90 (338)
                      .+++.+++    .++|++||+||...+
T Consensus       254 ~~~~~~~v~~~~~~~DilI~~Aav~d~  280 (399)
T PRK05579        254 AQEMLDAVLAALPQADIFIMAAAVADY  280 (399)
T ss_pred             HHHHHHHHHHhcCCCCEEEEccccccc
Confidence            77766655    468999999996553

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.17  E-value=1.2e-05  Score=70.71  Aligned_cols=117  Identities=14%  Similarity=0.187  Sum_probs=74.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCC--CcHHHHH-HHhc-CCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDP--DNKKKVK-HLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~--~~~~~~~-~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      |+|.|+|++|++|..++..|+..|.  +|.+++|+.  +...... ++.. +.......     .+.-..++ +.+.++|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~-----~i~~~~d~-~~l~~aD   74 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA-----EIKISSDL-SDVAGSD   74 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc-----EEEECCCH-HHhCCCC
Confidence            6899999999999999999999985  599999953  2211110 0100 00000011     12111223 3588999


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +||-+++....... ...+.+..|+.....+++.+.+..+...+|.+++.
T Consensus        75 iViitag~p~~~~~-~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np  123 (309)
T cd05294          75 IVIITAGVPRKEGM-SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP  123 (309)
T ss_pred             EEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            99999986543222 22467889999999999988877634567777763

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.12  E-value=1.3e-05  Score=72.15  Aligned_cols=102  Identities=18%  Similarity=0.202  Sum_probs=67.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~v   81 (338)
                      ++++|.|.||||++|..|++.|.++ +.++..+.++......+...        ......+|..+.+++... ++++|+|
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~--------~~~l~~~~~~~~~~~~~~~~~~~DvV  108 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSV--------FPHLITQDLPNLVAVKDADFSDVDAV  108 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhh--------CccccCccccceecCCHHHhcCCCEE
Confidence            4679999999999999999999988 57899988754433222211        112223454444444432 5789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      |.+.+.          .       .+..++..+. .+  .++|-.|+...+.
T Consensus       109 f~Alp~----------~-------~s~~i~~~~~-~g--~~VIDlSs~fRl~  140 (381)
T PLN02968        109 FCCLPH----------G-------TTQEIIKALP-KD--LKIVDLSADFRLR  140 (381)
T ss_pred             EEcCCH----------H-------HHHHHHHHHh-CC--CEEEEcCchhccC
Confidence            987652          1       2456666653 44  6899999987764

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.10  E-value=0.0001  Score=64.98  Aligned_cols=119  Identities=12%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      |....+||.|+|+ |.+|++++-.|+..|.  ++..++++.+..... .++........++.....      .+ +.+++
T Consensus         2 ~~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~------~~-~~~~~   73 (315)
T PRK00066          2 MKKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAG------DY-SDCKD   73 (315)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeC------CH-HHhCC
Confidence            3345689999997 9999999999998885  799999876653322 222211110012222222      12 45789


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +|+||-+||.......+. .+.+..|+...+.+++.+.+++...+++.+|.
T Consensus        74 adivIitag~~~k~g~~R-~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         74 ADLVVITAGAPQKPGETR-LDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             CCEEEEecCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            999999998754333333 47889999999999999988774456666653

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=98.10  E-value=7.7e-05  Score=65.78  Aligned_cols=174  Identities=9%  Similarity=0.047  Sum_probs=103.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--C-----eEEEEEcCCC----cHHHHHHHhcCCCCCCcEEEEecccCCCCCchh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--Y-----AVRATVRDPD----NKKKVKHLLELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~-----~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      +.||.|+|++|.+|++++-.|+..|  .     ++..++++..    ....++-.........++++.       ....+
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-------~~~~~   75 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-------TDPEE   75 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-------cChHH
Confidence            5699999999999999999999887  3     7888888542    222221111110000112211       12346


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCC-ccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT-VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      .++++|+||.+||.......+ -.+.+..|+...+.+...+.++.+ ...++.+|...-.     .....-+..+     
T Consensus        76 ~~~daDvVVitAG~~~k~g~t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv-----~t~v~~k~s~-----  144 (323)
T TIGR01759        76 AFKDVDAALLVGAFPRKPGME-RADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT-----NALIASKNAP-----  144 (323)
T ss_pred             HhCCCCEEEEeCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH-----HHHHHHHHcC-----
Confidence            778899999999975433333 347899999999999999998873 4556666542100     0000000000     


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                         --++....|.+.+..-++-..+++..+++...++-..|+|..-.
T Consensus       145 ---g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~  188 (323)
T TIGR01759       145 ---DIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN  188 (323)
T ss_pred             ---CCCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC
Confidence               00112234445555556666666777887777777777786533

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05442 malate dehydrogenase; Provisional

Probab=98.07  E-value=6.1e-05  Score=66.51  Aligned_cols=173  Identities=10%  Similarity=0.015  Sum_probs=101.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--C-----eEEEEEcCCCc----HHHHHHHhcCCCCCCcEEEEecccCCCCCchh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--Y-----AVRATVRDPDN----KKKVKHLLELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~-----~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      ++||.|+|++|.+|++++-.|...+  .     ++..+++++..    ...++-.........++.+.       ....+
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-------~~~y~   76 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-------DDPNV   76 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-------cChHH
Confidence            5799999999999999999988765  2     68888875421    11111111110000112111       12246


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      .++++|+||-+||.......+ -.+.+..|+...+.+.+.+.++. +...++.+|...-.     .....-+.++     
T Consensus        77 ~~~daDiVVitaG~~~k~g~t-R~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv-----~t~v~~k~s~-----  145 (326)
T PRK05442         77 AFKDADVALLVGARPRGPGME-RKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANT-----NALIAMKNAP-----  145 (326)
T ss_pred             HhCCCCEEEEeCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHH-----HHHHHHHHcC-----
Confidence            678899999999965433333 34789999999999999998854 35567777642100     0000000000     


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCC
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFL  198 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~  198 (338)
                         --++....|.+-+..-++-..+++..+++...++...|+|..-
T Consensus       146 ---g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG  188 (326)
T PRK05442        146 ---DLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHS  188 (326)
T ss_pred             ---CCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCc
Confidence               0011223444555555666666777788777777666778653

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.01  E-value=6.1e-05  Score=66.34  Aligned_cols=114  Identities=14%  Similarity=0.141  Sum_probs=77.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHH-HhcCC-CCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKH-LLELP-KASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ++|.|+| +|.+|+.++..|+.+|  +++.+++|+++....... +.... ....+......|      + +.+.++|+|
T Consensus         1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~------~-~~l~~aDIV   72 (306)
T cd05291           1 RKVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGD------Y-SDCKDADIV   72 (306)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCC------H-HHhCCCCEE
Confidence            4899999 5999999999999998  689999998776444322 11110 000122222221      2 346789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |.+++.......+. .+.++.|+.....+.+.++++.+...++.+|.
T Consensus        73 Iitag~~~~~g~~R-~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          73 VITAGAPQKPGETR-LDLLEKNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             EEccCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            99998755433333 47889999999999999998874556666664

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A

Probab=97.99  E-value=4.7e-06  Score=54.02  Aligned_cols=54  Identities=24%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             HHhCCCCCCCCCC-CCccccccccccchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          268 REKYPEFNVPTEF-EDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       268 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      .+..| .++++.+ +..+++...+..|++++++ |||+|+++|+++|+++.+|++++
T Consensus         3 e~vtG-~~i~~~~~~rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~n   58 (62)
T PF13950_consen    3 EKVTG-KKIPVEYAPRRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKN   58 (62)
T ss_dssp             HHHHT-S---EEEE---TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHS
T ss_pred             HHHHC-CCCCceECCCCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHC
Confidence            34444 3455544 3458888999999999987 99999999999999999999875

...

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=1.4e-05  Score=68.44  Aligned_cols=79  Identities=14%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ...++|-||+||.|..++++|...|.+-....|+..+...+.....     +  +.-..++.+++.+.+...+.++|+||
T Consensus         6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG-----~--~~~~~p~~~p~~~~~~~~~~~VVlnc   78 (382)
T COG3268           6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLG-----P--EAAVFPLGVPAALEAMASRTQVVLNC   78 (382)
T ss_pred             ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcC-----c--cccccCCCCHHHHHHHHhcceEEEec
Confidence            4679999999999999999999999988888898877776655433     2  23333444578888888999999999


Q ss_pred             cccCCC
Q 040253           85 ATPMDF   90 (338)
Q Consensus        85 a~~~~~   90 (338)
                      +|+...
T Consensus        79 vGPyt~   84 (382)
T COG3268          79 VGPYTR   84 (382)
T ss_pred             cccccc
Confidence            998663

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.92  E-value=3.6e-05  Score=67.17  Aligned_cols=80  Identities=10%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCC---CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDP---DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      ..++++|+|| |.+|++++..|.+.|.+ |++++|+.   ++...+....  ....+.+.....|+.+.+++.+.+..+|
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l--~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKI--KQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHH--hhcCCCceeEEechhhhhHHHhhhccCC
Confidence            3578999998 89999999999999975 99999986   3333332211  1111344566778888777877888899


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +|||+-.
T Consensus       202 ilINaTp  208 (289)
T PRK12548        202 ILVNATL  208 (289)
T ss_pred             EEEEeCC
Confidence            9999775

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.90  E-value=0.00018  Score=53.99  Aligned_cols=98  Identities=19%  Similarity=0.237  Sum_probs=57.1

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC-CeEEEEE-cCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG-YAVRATV-RDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||.|+||||++|+.|++.|.+.. .++..+. ++.+....+......+.....+.+..       ...+.+.++|+||.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dvvf~a   73 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-------ADPEELSDVDVVFLA   73 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-------TSGHHHTTESEEEE-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-------cchhHhhcCCEEEec
Confidence            78999999999999999999864 4555544 44424444443322111111122222       122445789999988


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      .+.          .       ....+...+.+.+ + ++|=.|+..
T Consensus        74 ~~~----------~-------~~~~~~~~~~~~g-~-~ViD~s~~~  100 (121)
T PF01118_consen   74 LPH----------G-------ASKELAPKLLKAG-I-KVIDLSGDF  100 (121)
T ss_dssp             SCH----------H-------HHHHHHHHHHHTT-S-EEEESSSTT
T ss_pred             Cch----------h-------HHHHHHHHHhhCC-c-EEEeCCHHH
Confidence            752          1       1345566666667 4 677777653

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.89  E-value=0.00035  Score=61.53  Aligned_cols=113  Identities=15%  Similarity=0.196  Sum_probs=75.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHH-HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKK-KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |+|.|+|+ |.+|..++..|+.+|  .+|.+++++..... ...++...............      ++ +.++++|+||
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~------d~-~~l~~aDiVi   72 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAG------DY-ADCKGADVVV   72 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeC------CH-HHhCCCCEEE
Confidence            47999996 999999999999998  68999999876443 22222221111112222222      22 4578999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      -+++.......+ ..++...|+.....+.+.+.+.++...++.++
T Consensus        73 ita~~~~~~~~~-r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          73 ITAGANQKPGET-RLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             EccCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            999864432222 34678889999999999988877344555554

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.88  E-value=0.00017  Score=63.27  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=77.2

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||.|+|++|.||++++-.|..++.  ++..+++++.....++ +....   ....+....  +.+++.+.++++|+||-+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~D-L~~~~---~~~~i~~~~--~~~~~~~~~~daDivvit   74 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAAD-LSHIP---TAASVKGFS--GEEGLENALKGADVVVIP   74 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEch-hhcCC---cCceEEEec--CCCchHHHcCCCCEEEEe
Confidence            689999999999999999988874  7888888662221111 11100   111111100  112345788899999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      ||.......+. .+.+..|+...+.+.+.+.++++...++.+|..
T Consensus        75 aG~~~~~g~~R-~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        75 AGVPRKPGMTR-DDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             CCCCCCCCccH-HHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            99755433333 378999999999999999888745567766653

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.88  E-value=0.00016  Score=63.80  Aligned_cols=117  Identities=13%  Similarity=0.122  Sum_probs=74.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHH-HHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVK-HLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |+||.|+|+ |.+|+.++..|+..|. +|.+++++++...... ++.....    .......++...++ +.++++|+||
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~----~~~~~~~i~~~~d~-~~~~~aDiVi   75 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAP----VEGFDTKITGTNDY-EDIAGSDVVV   75 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhh----hcCCCcEEEeCCCH-HHHCCCCEEE
Confidence            479999997 9999999999998865 8999999766543221 1111000    00001112112233 4578999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .+++.......+ -.+.+..|+.....+++.+.+..+...+|.+|.
T Consensus        76 i~~~~p~~~~~~-r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN  120 (307)
T PRK06223         76 ITAGVPRKPGMS-RDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN  120 (307)
T ss_pred             ECCCCCCCcCCC-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            998754422222 235677899988999888887763445776654

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.85  E-value=0.0005  Score=60.79  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=76.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHH--HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKK--KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .+||.|+| +|.+|+.++..|+..|. +|..++++++...  .++............++..     ..++ +.++++|+|
T Consensus         6 ~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~-----~~d~-~~l~~aDiV   78 (321)
T PTZ00082          6 RRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG-----TNNY-EDIAGSDVV   78 (321)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE-----CCCH-HHhCCCCEE
Confidence            57899999 69999999999988884 8999998776432  2211111111111222221     1123 467899999


Q ss_pred             EEecccCCCCCC----CccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           82 FHLATPMDFESK----DPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        82 i~~a~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      |.+++.......    ....+.+..|+.....+++.+.+..+...++.+|..
T Consensus        79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP  130 (321)
T PTZ00082         79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNP  130 (321)
T ss_pred             EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            999986442222    022457788999889999999888733477777754

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.84  E-value=0.00011  Score=61.61  Aligned_cols=74  Identities=19%  Similarity=0.214  Sum_probs=61.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      |+++|.| .|-+|+.+++.|.+.|++|.+++++++.........      .....+.+|-+|++.+.++ +.++|+|+-+
T Consensus         1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence            5788887 899999999999999999999999887755522200      3578999999999999988 7799999977


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      .+
T Consensus        74 t~   75 (225)
T COG0569          74 TG   75 (225)
T ss_pred             eC
Confidence            65

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=97.84  E-value=1.7e-05  Score=66.49  Aligned_cols=63  Identities=14%  Similarity=0.176  Sum_probs=43.8

Q ss_pred             CchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------CCccEEEEec
Q 040253           13 ASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------RGCTGVFHLA   85 (338)
Q Consensus        13 atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~~~d~vi~~a   85 (338)
                      ++|.+|.+++++|+++|++|+++++...    ..   .     .  ....+|+.+.+...+++       .++|++||+|
T Consensus        23 SSGgIG~AIA~~la~~Ga~Vvlv~~~~~----l~---~-----~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnA   88 (227)
T TIGR02114        23 STGHLGKIITETFLSAGHEVTLVTTKRA----LK---P-----E--PHPNLSIREIETTKDLLITLKELVQEHDILIHSM   88 (227)
T ss_pred             cccHHHHHHHHHHHHCCCEEEEEcChhh----cc---c-----c--cCCcceeecHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            3899999999999999999998876311    00   0     0  01246777766555433       3689999999


Q ss_pred             ccCC
Q 040253           86 TPMD   89 (338)
Q Consensus        86 ~~~~   89 (338)
                      |...
T Consensus        89 gv~d   92 (227)
T TIGR02114        89 AVSD   92 (227)
T ss_pred             Eecc
Confidence            9644

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.82  E-value=0.00017  Score=62.14  Aligned_cols=115  Identities=14%  Similarity=0.089  Sum_probs=78.0

Q ss_pred             EEEeCCchhhHHHHHHHHHHCC----CeEEEEEcCCCcHHHHHHHh-cCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            8 VCVTGASGFIGSWLIMRLLERG----YAVRATVRDPDNKKKVKHLL-ELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |.|+||+|.+|..++..|+..|    .++..++++.+......... ....  .  . ....+.-.+++.+.++++|+||
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~--~--~-~~~~i~~~~d~~~~~~~aDiVv   75 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVE--P--L-ADIKVSITDDPYEAFKDADVVI   75 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhh--h--c-cCcEEEECCchHHHhCCCCEEE
Confidence            5789999999999999999888    78999998775543332211 1110  0  0 1122222344567889999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      -+++......... ......|+.....+++.+.+..+...++.+|.
T Consensus        76 ~t~~~~~~~g~~r-~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN  120 (263)
T cd00650          76 ITAGVGRKPGMGR-LDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN  120 (263)
T ss_pred             ECCCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9998655433332 36788899999999999988764456666653

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.81  E-value=0.00011  Score=65.71  Aligned_cols=101  Identities=20%  Similarity=0.160  Sum_probs=62.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEE-ecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLW-KADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |++|+|+||||++|+.+++.|.+. +.++..+.++.+....+....      +++..+ ..++.+.+..  .+.++|+||
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~------~~~~~~~~~~~~~~~~~--~~~~vD~Vf   73 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVH------PHLRGLVDLVLEPLDPE--ILAGADVVF   73 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhC------cccccccCceeecCCHH--HhcCCCEEE
Confidence            589999999999999999999887 578877776433322222111      112111 2233333322  446799998


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      -+...       .  .        ...++..+.+.|  +++|=.|+..-+
T Consensus        74 ~alP~-------~--~--------~~~~v~~a~~aG--~~VID~S~~fR~  104 (343)
T PRK00436         74 LALPH-------G--V--------SMDLAPQLLEAG--VKVIDLSADFRL  104 (343)
T ss_pred             ECCCc-------H--H--------HHHHHHHHHhCC--CEEEECCcccCC
Confidence            76642       1  1        245555665566  689988887655

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.79  E-value=0.00064  Score=59.84  Aligned_cols=115  Identities=14%  Similarity=0.126  Sum_probs=76.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH-HHHHhc-CCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK-VKHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      .+||.|+|+ |.||+.++-.|+..|  .++..++++.+.... ..++.. .+.. ....+..     ..+++ .++++|+
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~-~~~~v~~-----~~dy~-~~~~adi   74 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFL-KNPKIEA-----DKDYS-VTANSKV   74 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccC-CCCEEEE-----CCCHH-HhCCCCE
Confidence            469999995 999999999998887  478888887653322 122211 1111 1112222     11233 4788999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||-+||.......+. .+.+..|+...+.+.+.+.++.+...++.+|.
T Consensus        75 vvitaG~~~k~g~~R-~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          75 VIVTAGARQNEGESR-LDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             EEECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            999998755433333 47889999999999999998875556776664

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.79  E-value=0.00049  Score=59.76  Aligned_cols=115  Identities=16%  Similarity=0.130  Sum_probs=74.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHH--HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKK--KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +||.|+|+ |.||+.++-.|+.++  .++..+++......  ..+-.......... ..+.+| .+    .+.++++|+|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~-~~i~~~-~~----y~~~~~aDiV   73 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSD-VKITGD-GD----YEDLKGADIV   73 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCc-eEEecC-CC----hhhhcCCCEE
Confidence            58999998 999999999997765  48999998733221  11111111110011 111222 11    3567789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +-+||.......+.. ++++.|......+.+.+.+......|+.+|.
T Consensus        74 vitAG~prKpGmtR~-DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN  119 (313)
T COG0039          74 VITAGVPRKPGMTRL-DLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN  119 (313)
T ss_pred             EEeCCCCCCCCCCHH-HHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence            999987664444444 7899999999999999998874345555543

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=97.77  E-value=3.6e-05  Score=69.52  Aligned_cols=102  Identities=17%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             CCcEEEEeCC----------------chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            4 IAETVCVTGA----------------SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      .+++|+||||                ||.+|..+++.|..+|++|+++.+.....        .+   ..  ....|+.+
T Consensus       184 ~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~--------~~---~~--~~~~~v~~  250 (390)
T TIGR00521       184 EGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL--------TP---PG--VKSIKVST  250 (390)
T ss_pred             CCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC--------CC---CC--cEEEEecc
Confidence            3689999999                47899999999999999999888654321        11   12  24568888


Q ss_pred             CCCc-hhhh----CCccEEEEecccCCCCCCCcc-------chhhhhhhHHHHHHHHHHHhCC
Q 040253           68 EGNF-DEPI----RGCTGVFHLATPMDFESKDPE-------NEVIRPTINGMVSIMRACKNAK  118 (338)
Q Consensus        68 ~~~~-~~~~----~~~d~vi~~a~~~~~~~~~~~-------~~~~~~n~~~~~~l~~~~~~~~  118 (338)
                      .+++ .+++    .++|++|++||...+......       ...+..|+..+..++..+++..
T Consensus       251 ~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~  313 (390)
T TIGR00521       251 AEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK  313 (390)
T ss_pred             HHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence            7766 4333    368999999997553221110       1224467777788888777654

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.77  E-value=0.00014  Score=64.81  Aligned_cols=96  Identities=21%  Similarity=0.172  Sum_probs=60.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC---eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY---AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +++|+|.||||++|..|++.|.+++|   ++..+.+.......+.    .    .+.+....|+.+     ..+.++|+|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~----~----~g~~i~v~d~~~-----~~~~~vDvV   67 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELS----F----KGKELKVEDLTT-----FDFSGVDIA   67 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeee----e----CCceeEEeeCCH-----HHHcCCCEE
Confidence            46999999999999999999999775   4577776644332221    0    122333344432     234689999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      |.+++..         .        +..++..+.+.| . ++|=.|+..-+
T Consensus        68 f~A~g~g---------~--------s~~~~~~~~~~G-~-~VIDlS~~~R~   99 (334)
T PRK14874         68 LFSAGGS---------V--------SKKYAPKAAAAG-A-VVIDNSSAFRM   99 (334)
T ss_pred             EECCChH---------H--------HHHHHHHHHhCC-C-EEEECCchhhc
Confidence            9877631         0        344555555566 3 67777775433

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.75  E-value=0.00055  Score=62.63  Aligned_cols=175  Identities=11%  Similarity=0.074  Sum_probs=105.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-------CC--eEEEEEcCCCcHHHHHH-Hh-cCCCCCCcEEEEecccCCCCCchh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-------GY--AVRATVRDPDNKKKVKH-LL-ELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .-||.|+|++|.||.+++-.|+..       +.  ++..++++.+......- +. .......++.+..+|       .+
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~-------ye  172 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP-------YE  172 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC-------HH
Confidence            468999999999999999999887       53  78888887765433211 11 110000122222222       36


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHh-CCCccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKN-AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      .++++|+||-+||.......+. .+.++.|+.....+.+.+.+ .++-..+|.+|...-.     .....-+..      
T Consensus       173 ~~kdaDiVVitAG~prkpG~tR-~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv-----~t~v~~k~s------  240 (444)
T PLN00112        173 VFQDAEWALLIGAKPRGPGMER-ADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT-----NALICLKNA------  240 (444)
T ss_pred             HhCcCCEEEECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH-----HHHHHHHHc------
Confidence            6788999999999755333333 47899999999999999998 5645567766653100     000000000      


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCC
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTS  200 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~  200 (338)
                        +..+.+..=..+.+..-++-..++++.+++...+.-..|+|..-+.
T Consensus       241 --g~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGds  286 (444)
T PLN00112        241 --PNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTT  286 (444)
T ss_pred             --CCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCc
Confidence              0001122223334444555556667778888888777888876443

>PLN02602 lactate dehydrogenase

Probab=97.72  E-value=0.00094  Score=59.60  Aligned_cols=115  Identities=12%  Similarity=0.139  Sum_probs=76.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      +||.|+|+ |.||++++-.|+..+  .++..++.+.+..... .++.....-.+...+..     ..++ +.++++|+||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-----~~dy-~~~~daDiVV  110 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-----STDY-AVTAGSDLCI  110 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-----CCCH-HHhCCCCEEE
Confidence            69999995 999999999998887  4788898876543221 11211110001222221     1122 3478999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      -+||.......+. .+.+..|+.....+.+.+.++.+...+|.+|.
T Consensus       111 itAG~~~k~g~tR-~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        111 VTAGARQIPGESR-LNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             ECCCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            9999754333333 47889999999999999988874556776664

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.70  E-value=0.00011  Score=73.89  Aligned_cols=77  Identities=12%  Similarity=0.057  Sum_probs=59.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-Ce-------------EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YA-------------VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG   69 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~   69 (338)
                      .+++|+|+| +|++|+..++.|.+.. .+             |.+.+++.+...++....      ++++.+..|+.|.+
T Consensus       568 ~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~------~~~~~v~lDv~D~e  640 (1042)
T PLN02819        568 KSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI------ENAEAVQLDVSDSE  640 (1042)
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc------CCCceEEeecCCHH
Confidence            368999999 5999999999998753 33             777777665554443211      46788999999999


Q ss_pred             CchhhhCCccEEEEeccc
Q 040253           70 NFDEPIRGCTGVFHLATP   87 (338)
Q Consensus        70 ~~~~~~~~~d~vi~~a~~   87 (338)
                      ++.++++++|+||.+...
T Consensus       641 ~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        641 SLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHhhcCCCEEEECCCc
Confidence            999988999999999863

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.70  E-value=0.00048  Score=60.97  Aligned_cols=117  Identities=14%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHH--HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKK--VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .+||.|+|| |.+|+.++..|...| .++..++++.+....  ++.............     +....+++ .++++|+|
T Consensus         5 ~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-----i~~~~d~~-~l~~ADiV   77 (319)
T PTZ00117          5 RKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-----ILGTNNYE-DIKDSDVV   77 (319)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeE-----EEeCCCHH-HhCCCCEE
Confidence            579999996 999999999998888 689999987654322  111111110001111     11123344 67899999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      |.+++.......+. .+.+..|......+.+.+.+..+...++.+|..
T Consensus        78 Vitag~~~~~g~~r-~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP  124 (319)
T PTZ00117         78 VITAGVQRKEEMTR-EDLLTINGKIMKSVAESVKKYCPNAFVICVTNP  124 (319)
T ss_pred             EECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence            99998654333333 367888998889999999888744557777653

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.68  E-value=0.001  Score=58.45  Aligned_cols=166  Identities=11%  Similarity=0.045  Sum_probs=99.3

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH-HHHHhc-CCCCC-CcEEEEecccCCCCCchhhhCCccEE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK-VKHLLE-LPKAS-THLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~-~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ||.|+|+ |.+|+.++..|+.++  .++..++.+.+.... ..++.. ..... .++.+..+|       .+.++++|+|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~~~aDiv   72 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-------YDDCADADII   72 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-------HHHhCCCCEE
Confidence            5889997 999999999999887  478888886553222 222221 11111 234444333       3677889999


Q ss_pred             EEecccCCCCCCCc-cchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce---eeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           82 FHLATPMDFESKDP-ENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG---TLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        82 i~~a~~~~~~~~~~-~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~---v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      |-+||.......+. -.+.+..|+...+.+.+.+.++++...++.+|...   +|-.       .....          -
T Consensus        73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~-------~k~sg----------~  135 (307)
T cd05290          73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA-------ATEFD----------Y  135 (307)
T ss_pred             EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH-------HHHhC----------c
Confidence            99999654333331 24788999999999999999888444566555431   0100       00000          0


Q ss_pred             CCCchHHH-HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCC
Q 040253          158 MTGWMYFV-SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFL  198 (338)
Q Consensus       158 ~p~~~Y~~-sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~  198 (338)
                      ++.-..|. +-+..-++-..+++..+++...++.. |+|...
T Consensus       136 p~~rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHG  176 (307)
T cd05290         136 PANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHG  176 (307)
T ss_pred             ChhheecccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCC
Confidence            01112222 33444455555666678887777765 778663

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.65  E-value=0.00012  Score=68.48  Aligned_cols=73  Identities=12%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      |+|+|+|+ |.+|+++++.|.+.|++|++++++++........       .+++++.+|.++...+.++ ++++|+||-+
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            58999986 9999999999999999999999987665544321       3578999999998888877 7789999876


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        73 ~~   74 (453)
T PRK09496         73 TD   74 (453)
T ss_pred             cC
Confidence            54

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.61  E-value=0.00077  Score=59.23  Aligned_cols=116  Identities=13%  Similarity=0.121  Sum_probs=73.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      |+|.|+|+ |++|..++..|+.+|+ +|.++++........ .++.....    .......+.-..++.+ ++++|+||-
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~----~~~~~~~i~~t~d~~~-~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASP----VGGFDTKVTGTNNYAD-TANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhh----ccCCCcEEEecCCHHH-hCCCCEEEE
Confidence            58999995 9999999999999886 899999865533211 11111000    0000111221223333 678999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +++......... .+.+..|+.....+++.+.++.+-..+|.+|.
T Consensus        76 tag~p~~~~~sR-~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN  119 (305)
T TIGR01763        76 TAGLPRKPGMSR-EDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN  119 (305)
T ss_pred             cCCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            998644322222 35788899999999998887763456766665

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.61  E-value=0.00022  Score=63.23  Aligned_cols=99  Identities=20%  Similarity=0.215  Sum_probs=58.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEE--EEcCCCcHH-HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRA--TVRDPDNKK-KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~--~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      |+. |++|.|+||||++|..+++.|.++++.+.-  ..++.+... .+.    .    .+   ...++.+.+..  .+++
T Consensus         1 m~~-~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~----~----~~---~~l~~~~~~~~--~~~~   66 (336)
T PRK05671          1 MSQ-PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVP----F----AG---KNLRVREVDSF--DFSQ   66 (336)
T ss_pred             CCC-CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeec----c----CC---cceEEeeCChH--HhcC
Confidence            553 579999999999999999999987653332  223322211 110    0    11   22344333322  2478


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      +|+||.+.+.          .       .+..++..+.+.|  .++|=.|+..-+
T Consensus        67 vD~vFla~p~----------~-------~s~~~v~~~~~~G--~~VIDlS~~fR~  102 (336)
T PRK05671         67 VQLAFFAAGA----------A-------VSRSFAEKARAAG--CSVIDLSGALPS  102 (336)
T ss_pred             CCEEEEcCCH----------H-------HHHHHHHHHHHCC--CeEEECchhhcC
Confidence            9999876652          1       0244666776677  468888887654

>PRK04148 hypothetical protein; Provisional

Probab=97.57  E-value=0.0013  Score=49.74  Aligned_cols=92  Identities=16%  Similarity=0.198  Sum_probs=68.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .++|++.| +| -|.+++..|.+.|++|++++.++...+..+.        ..++.+.+|+.+++.  ++-+++|.|+-+
T Consensus        17 ~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~--------~~~~~v~dDlf~p~~--~~y~~a~liysi   84 (134)
T PRK04148         17 NKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKK--------LGLNAFVDDLFNPNL--EIYKNAKLIYSI   84 (134)
T ss_pred             CCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------hCCeEEECcCCCCCH--HHHhcCCEEEEe
Confidence            47899998 67 8999999999999999999998876554443        357899999998874  555688999854


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEE
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF  125 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~  125 (338)
                      =.         +.++       ...+++.+++.+ ..-+|.
T Consensus        85 rp---------p~el-------~~~~~~la~~~~-~~~~i~  108 (134)
T PRK04148         85 RP---------PRDL-------QPFILELAKKIN-VPLIIK  108 (134)
T ss_pred             CC---------CHHH-------HHHHHHHHHHcC-CCEEEE
Confidence            32         2222       356888888888 655543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.57  E-value=0.00011  Score=56.28  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=54.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++++|.|+ |-.|+.++..|.+.|.+ |+++.|+.++...+......    ..+..+..     +++.+.+.++|+||
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~----~~~~~~~~-----~~~~~~~~~~DivI   80 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG----VNIEAIPL-----EDLEEALQEADIVI   80 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG----CSEEEEEG-----GGHCHHHHTESEEE
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc----cccceeeH-----HHHHHHHhhCCeEE
Confidence            4789999995 88999999999999965 99999988777666554310    23444433     33446777899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      ++.+.
T Consensus        81 ~aT~~   85 (135)
T PF01488_consen   81 NATPS   85 (135)
T ss_dssp             E-SST
T ss_pred             EecCC
Confidence            99864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.53  E-value=0.00038  Score=62.28  Aligned_cols=101  Identities=20%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC-CCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEE-ecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER-GYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLW-KADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ++|.|+||||++|..+++.|.+. +.++..+ +++......+....      +.+... ..++.+. +..++.+++|+||
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~------~~l~~~~~~~~~~~-~~~~~~~~~DvVf   73 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVH------PHLRGLVDLNLEPI-DEEEIAEDADVVF   73 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhC------ccccccCCceeecC-CHHHhhcCCCEEE
Confidence            58999999999999999999977 4677744 44332222222211      111111 1112211 2234445799999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      .+...          .       ....++..+.+.|  +++|-.|+..-+
T Consensus        74 ~alP~----------~-------~s~~~~~~~~~~G--~~VIDlS~~fR~  104 (346)
T TIGR01850        74 LALPH----------G-------VSAELAPELLAAG--VKVIDLSADFRL  104 (346)
T ss_pred             ECCCc----------h-------HHHHHHHHHHhCC--CEEEeCChhhhc
Confidence            87752          1       1355666666666  689999987655

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.53  E-value=0.00018  Score=58.08  Aligned_cols=76  Identities=21%  Similarity=0.238  Sum_probs=46.9

Q ss_pred             CcEEEEeCC----------------chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC-
Q 040253            5 AETVCVTGA----------------SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE-   67 (338)
Q Consensus         5 ~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-   67 (338)
                      +++||||+|                ||..|.+|++.+..+|++|+.+..... ...       |   ++++.+...-.+ 
T Consensus         3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~~-------p---~~~~~i~v~sa~e   71 (185)
T PF04127_consen    3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS-LPP-------P---PGVKVIRVESAEE   71 (185)
T ss_dssp             T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------TTEEEEE-SSHHH
T ss_pred             CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc-ccc-------c---ccceEEEecchhh
Confidence            678999876                799999999999999999998877532 111       1   466666644321 


Q ss_pred             -CCCchhhhCCccEEEEecccCCCC
Q 040253           68 -EGNFDEPIRGCTGVFHLATPMDFE   91 (338)
Q Consensus        68 -~~~~~~~~~~~d~vi~~a~~~~~~   91 (338)
                       .+.+.+.+.+.|++||+|+...+.
T Consensus        72 m~~~~~~~~~~~Di~I~aAAVsDf~   96 (185)
T PF04127_consen   72 MLEAVKELLPSADIIIMAAAVSDFR   96 (185)
T ss_dssp             HHHHHHHHGGGGSEEEE-SB--SEE
T ss_pred             hhhhhccccCcceeEEEecchhhee
Confidence             123334455789999999976643

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.52  E-value=0.0012  Score=58.94  Aligned_cols=108  Identities=16%  Similarity=0.227  Sum_probs=69.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCC---------------------cHHHH-HHHhcCCCCCCcEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPD---------------------NKKKV-KHLLELPKASTHLTLW   61 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~---------------------~~~~~-~~~~~~~~~~~~~~~~   61 (338)
                      .++|+|.| .|.+|++++..|...|. ++.+++++.-                     +.... +.+.... ..-.++.+
T Consensus        24 ~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in-p~v~v~~~  101 (339)
T PRK07688         24 EKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN-SDVRVEAI  101 (339)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC-CCcEEEEE
Confidence            46899998 59999999999999996 8999987531                     11111 1111111 11245666


Q ss_pred             ecccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           62 KADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        62 ~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      ..+++ .+.+.+++++.|+||.+..        +.        ..-..+.++|.+.+ + .+|+.++...+|
T Consensus       102 ~~~~~-~~~~~~~~~~~DlVid~~D--------n~--------~~r~~ln~~~~~~~-i-P~i~~~~~g~~G  154 (339)
T PRK07688        102 VQDVT-AEELEELVTGVDLIIDATD--------NF--------ETRFIVNDAAQKYG-I-PWIYGACVGSYG  154 (339)
T ss_pred             eccCC-HHHHHHHHcCCCEEEEcCC--------CH--------HHHHHHHHHHHHhC-C-CEEEEeeeeeee
Confidence            66664 3445667889999997743        11        11235667888887 4 488888776665

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.50  E-value=0.00027  Score=62.42  Aligned_cols=38  Identities=26%  Similarity=0.390  Sum_probs=33.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK   43 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~   43 (338)
                      +|+|.|+| +|.+|..++..|+++|++|++++|++....
T Consensus         2 ~~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~   39 (308)
T PRK06129          2 MGSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAA   39 (308)
T ss_pred             CcEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHH
Confidence            46899998 999999999999999999999999876544

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.49  E-value=0.0011  Score=58.20  Aligned_cols=113  Identities=13%  Similarity=0.121  Sum_probs=74.5

Q ss_pred             EEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHH-HHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            8 VCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVK-HLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      |.|.| +|.+|+.++-.|+..|  .++.+++++.+...... ++...........+...     .+ .+.++++|+||.+
T Consensus         1 i~iiG-aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~-----~~-~~~l~~aDiVIit   73 (300)
T cd00300           1 ITIIG-AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG-----GD-YADAADADIVVIT   73 (300)
T ss_pred             CEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC-----CC-HHHhCCCCEEEEc
Confidence            46788 5889999999999988  68999999776543322 22211110011122211     11 3578899999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ++.......+. .+....|+...+.+.+.++++.+...++.+|.
T Consensus        74 ag~p~~~~~~R-~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          74 AGAPRKPGETR-LDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            98654333333 47788999999999999998874556666664

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.49  E-value=0.0013  Score=58.61  Aligned_cols=108  Identities=13%  Similarity=0.206  Sum_probs=68.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCC---------------------cHHHH-HHHhcCCCCCCcEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPD---------------------NKKKV-KHLLELPKASTHLTLW   61 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~---------------------~~~~~-~~~~~~~~~~~~~~~~   61 (338)
                      .++|+|.| .|-+|+++++.|...|. ++++++++.-                     +.... +.+.... ..-.++.+
T Consensus        24 ~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in-p~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN-SEVEIVPV  101 (338)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC-CCcEEEEE
Confidence            57899998 56699999999999996 8888888641                     11111 1121111 11356667


Q ss_pred             ecccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           62 KADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        62 ~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      ..|++ .+.+.++++++|+||.+..        +.    +    .-..+-++|...+ ++ +|+.+..+.+|
T Consensus       102 ~~~~~-~~~~~~~~~~~DlVid~~D--------~~----~----~r~~in~~~~~~~-ip-~i~~~~~g~~G  154 (338)
T PRK12475        102 VTDVT-VEELEELVKEVDLIIDATD--------NF----D----TRLLINDLSQKYN-IP-WIYGGCVGSYG  154 (338)
T ss_pred             eccCC-HHHHHHHhcCCCEEEEcCC--------CH----H----HHHHHHHHHHHcC-CC-EEEEEecccEE
Confidence            77774 3456778889999997753        11    1    1123556777777 44 77777665555

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.45  E-value=0.00063  Score=63.51  Aligned_cols=76  Identities=25%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGC   78 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (338)
                      |....|+|+|+|+++ +|..+++.|++.|++|++.+++... ... ...+..     .++.++.+|..+     +...++
T Consensus         1 ~~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~-----~~~~~~   69 (450)
T PRK14106          1 MELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE-----LGIELVLGEYPE-----EFLEGV   69 (450)
T ss_pred             CCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh-----cCCEEEeCCcch-----hHhhcC
Confidence            544578999999888 9999999999999999999986522 111 122211     256777777765     345578


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+||+.++.
T Consensus        70 d~vv~~~g~   78 (450)
T PRK14106         70 DLVVVSPGV   78 (450)
T ss_pred             CEEEECCCC
Confidence            999998875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.40  E-value=0.0013  Score=48.91  Aligned_cols=70  Identities=23%  Similarity=0.348  Sum_probs=55.7

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEecc
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHLAT   86 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~a~   86 (338)
                      |+|.| .|-+|..+++.|.+.+.+|+++++++...+.+..        .++.++.+|.+|++.+.++ +++++.|+-+..
T Consensus         1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEEEEccC
Confidence            57777 5789999999999977799999998877665554        4678999999999988875 468998887654

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.39  E-value=0.0028  Score=57.12  Aligned_cols=174  Identities=10%  Similarity=0.065  Sum_probs=98.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-e----EEE----EEcCCCcHHHHH-HHhcCC-CCCCcEEEEecccCCCCCchh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-A----VRA----TVRDPDNKKKVK-HLLELP-KASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~----V~~----~~r~~~~~~~~~-~~~~~~-~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .-||.|+|++|.+|++++-.|...+. .    |.+    ++++.+...... ++.... ....++.+..+|       .+
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~-------y~  116 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP-------YE  116 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC-------HH
Confidence            56899999999999999999988762 2    333    255544432221 111100 000122222221       36


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      .++++|+||-+||.......+ -.+.+..|+...+.+...+.++. +-.++|.+|...-.     .....-...      
T Consensus       117 ~~kdaDIVVitAG~prkpg~t-R~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv-----~t~v~~k~s------  184 (387)
T TIGR01757       117 VFEDADWALLIGAKPRGPGME-RADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT-----NALIAMKNA------  184 (387)
T ss_pred             HhCCCCEEEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHH-----HHHHHHHHc------
Confidence            778899999999975433333 34789999999999999998843 34567766642100     000000000      


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                        ..++.+..=..+.+..-++-..++++.+++...++-..|.|..-.
T Consensus       185 --g~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd  229 (387)
T TIGR01757       185 --PNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST  229 (387)
T ss_pred             --CCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC
Confidence              000111222333444455556666677777777766777886543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.36  E-value=0.0012  Score=61.63  Aligned_cols=76  Identities=24%  Similarity=0.406  Sum_probs=59.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi   82 (338)
                      .+++|+|+|+ |.+|+.+++.|.+.|++|++++++++....+....      .++..+.+|.++.+.+.++ ++++|+||
T Consensus       230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~vi  302 (453)
T PRK09496        230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAFI  302 (453)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEEE
Confidence            3678999995 99999999999999999999999877655443321      3578899999998887554 46899988


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      -+..
T Consensus       303 ~~~~  306 (453)
T PRK09496        303 ALTN  306 (453)
T ss_pred             ECCC
Confidence            5543

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=97.35  E-value=0.0063  Score=56.77  Aligned_cols=171  Identities=20%  Similarity=0.213  Sum_probs=104.4

Q ss_pred             CcEEEEeCCc-hhhHHHHHHHHHHCCCeEEEEEc--CCCcHHHHHHHhcCCCC-CCcEEEEecccCCCCCchhhhC----
Q 040253            5 AETVCVTGAS-GFIGSWLIMRLLERGYAVRATVR--DPDNKKKVKHLLELPKA-STHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         5 ~~~ilVtGat-G~iG~~l~~~L~~~g~~V~~~~r--~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      .+..|||||+ |-||..++..|++.|.+|++..-  +....+.++.+...... ....-++..+..++.++..+++    
T Consensus       396 d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg~  475 (866)
T COG4982         396 DKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIGD  475 (866)
T ss_pred             cceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhcc
Confidence            4678999998 99999999999999999988765  34456667777764433 3456677788887777766542    


Q ss_pred             -----------------CccEEEEecccCCCCCC--Cc--cchhhhhhhHHHHHHHHHHHhCC------CccEEEEecCc
Q 040253           77 -----------------GCTGVFHLATPMDFESK--DP--ENEVIRPTINGMVSIMRACKNAK------TVRRLVFTSSA  129 (338)
Q Consensus        77 -----------------~~d~vi~~a~~~~~~~~--~~--~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~Ss~  129 (338)
                                       .+|.+|-+|++.-....  ..  .+..+++-+....+++-..+..+      +.-++|...|.
T Consensus       476 eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgSP  555 (866)
T COG4982         476 EQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGSP  555 (866)
T ss_pred             ccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCCC
Confidence                             26788888875321111  11  11223333333444444333332      12356655553


Q ss_pred             eeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcC----ccEEEEcCCceeCCCC
Q 040253          130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN----IDFISIIPSLVVGPFL  198 (338)
Q Consensus       130 ~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~----~~~~ilRp~~v~G~~~  198 (338)
                      .        ...|-               ....|+.+|...|.++..++.+.+    +.++--++|++-|-+.
T Consensus       556 N--------rG~FG---------------gDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGL  605 (866)
T COG4982         556 N--------RGMFG---------------GDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGL  605 (866)
T ss_pred             C--------CCccC---------------CCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeeccccc
Confidence            1        11111               223799999999999999987763    2333345555555543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.34  E-value=0.00025  Score=57.41  Aligned_cols=80  Identities=23%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEE------ecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLW------KADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~Dl~d~~~~~~~~~~~d   79 (338)
                      |||.|.| .||+|..++..|++.|++|++++.+++..+.+..-. .+...++..-+      .+.++-..++..++.++|
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~-~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad   78 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGE-LPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD   78 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTS-SSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred             CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhcc-ccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence            6899996 999999999999999999999998876555443211 11111111000      112222234455566789


Q ss_pred             EEEEeccc
Q 040253           80 GVFHLATP   87 (338)
Q Consensus        80 ~vi~~a~~   87 (338)
                      ++|-|.+.
T Consensus        79 v~~I~VpT   86 (185)
T PF03721_consen   79 VVFICVPT   86 (185)
T ss_dssp             EEEE----
T ss_pred             eEEEecCC
Confidence            99988863

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.29  E-value=0.001  Score=57.93  Aligned_cols=103  Identities=17%  Similarity=0.154  Sum_probs=59.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEE-EEecccCCCCCchh-hhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLT-LWKADLAEEGNFDE-PIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~Dl~d~~~~~~-~~~~~d~   80 (338)
                      +|+||.|.||+||.|..|++.|.... .++..++.+......+....      ++.. .+...++..+ ..+ ..+++|+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~------p~l~g~~~l~~~~~~-~~~~~~~~~Dv   73 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVH------PNLRGLVDLPFQTID-PEKIELDECDV   73 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhC------cccccccccccccCC-hhhhhcccCCE
Confidence            47899999999999999999999875 46555554433333333322      2222 1111111111 112 2346899


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      ||.+...       ..          +..++......+  .++|=+|+..-.
T Consensus        74 vFlalPh-------g~----------s~~~v~~l~~~g--~~VIDLSadfR~  106 (349)
T COG0002          74 VFLALPH-------GV----------SAELVPELLEAG--CKVIDLSADFRL  106 (349)
T ss_pred             EEEecCc-------hh----------HHHHHHHHHhCC--CeEEECCccccc
Confidence            9876542       11          234555555555  348888887554

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=97.26  E-value=0.012  Score=45.42  Aligned_cols=146  Identities=14%  Similarity=0.094  Sum_probs=79.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC---CC----chhhhC-
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE---GN----FDEPIR-   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~----~~~~~~-   76 (338)
                      ..+|+|-||-|-+|+..++.+..++|-|.-++.......            ..-.++.+|-.=.   ++    +.+.+. 
T Consensus         3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A------------d~sI~V~~~~swtEQe~~v~~~vg~sL~g   70 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA------------DSSILVDGNKSWTEQEQSVLEQVGSSLQG   70 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc------------cceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence            368999999999999999999999999888776543221            1112222222111   11    222333 


Q ss_pred             -CccEEEEecccCC-CCCC-----CccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee-eeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMD-FESK-----DPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT-LDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~-~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v-~~~~~~~~~~~~e~~~~  148 (338)
                       ++|.|++.||... -..+     ++.+.+++..+.....-...+-.+-+..-++.+..+.. .+               
T Consensus        71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~---------------  135 (236)
T KOG4022|consen   71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALG---------------  135 (236)
T ss_pred             cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccC---------------
Confidence             6999999997432 1111     11122333333222111122222211233554444332 22               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-Ccc
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-NID  184 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~  184 (338)
                             ..+.--.||.+|.+..++.+.++.+. |++
T Consensus       136 -------gTPgMIGYGMAKaAVHqLt~SLaak~SGlP  165 (236)
T KOG4022|consen  136 -------GTPGMIGYGMAKAAVHQLTSSLAAKDSGLP  165 (236)
T ss_pred             -------CCCcccchhHHHHHHHHHHHHhcccccCCC
Confidence                   11122379999999999999887553 554

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.26  E-value=0.0033  Score=51.81  Aligned_cols=108  Identities=20%  Similarity=0.182  Sum_probs=65.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCC---c----------------HHHH-HHHhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPD---N----------------KKKV-KHLLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~---~----------------~~~~-~~~~~~~~~~~~~~~~~~   63 (338)
                      .++|+|.| .|-+|+++++.|...|. ++++++++.-   +                .+.. +.+.... .+-+++.+..
T Consensus        21 ~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~~~~   98 (202)
T TIGR02356        21 NSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-SDIQVTALKE   98 (202)
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC-CCCEEEEehh
Confidence            46899998 88999999999999995 8888887521   1                1111 1111111 0123444444


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      .+. .+.+.+.++++|+||.+...        .        ..-..+.++|+..+ + .+|+.++...+|
T Consensus        99 ~i~-~~~~~~~~~~~D~Vi~~~d~--------~--------~~r~~l~~~~~~~~-i-p~i~~~~~g~~G  149 (202)
T TIGR02356        99 RVT-AENLELLINNVDLVLDCTDN--------F--------ATRYLINDACVALG-T-PLISAAVVGFGG  149 (202)
T ss_pred             cCC-HHHHHHHHhCCCEEEECCCC--------H--------HHHHHHHHHHHHcC-C-CEEEEEeccCeE
Confidence            443 34456678899999977531        1        11234667778777 4 477777654443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.26  E-value=0.00099  Score=59.42  Aligned_cols=93  Identities=18%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEE---EEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVR---ATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +|+|.||||++|..|++.|.+++|.+.   .+.+.......+.    .    .+......|+.     ...+.++|+||.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~----~----~~~~~~~~~~~-----~~~~~~~D~v~~   67 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVT----F----KGKELEVNEAK-----IESFEGIDIALF   67 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeee----e----CCeeEEEEeCC-----hHHhcCCCEEEE
Confidence            589999999999999999999877644   3335443322221    0    22344444552     234578999998


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT  131 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v  131 (338)
                      +++..         .        +..++..+.+.| + ++|=.|+..-
T Consensus        68 a~g~~---------~--------s~~~a~~~~~~G-~-~VID~ss~~R   96 (339)
T TIGR01296        68 SAGGS---------V--------SKEFAPKAAKCG-A-IVIDNTSAFR   96 (339)
T ss_pred             CCCHH---------H--------HHHHHHHHHHCC-C-EEEECCHHHh
Confidence            88731         1        234455555556 4 5776676543

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.26  E-value=0.0013  Score=53.44  Aligned_cols=67  Identities=18%  Similarity=0.125  Sum_probs=45.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ||++.| ||+|.||+.++++|...||+|++..|+.++.. .......     +.        -......++.+..|+||-
T Consensus         1 m~~~~i-~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~-----~~--------i~~~~~~dA~~~aDVVvL   66 (211)
T COG2085           1 MMIIAI-IGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG-----PL--------ITGGSNEDAAALADVVVL   66 (211)
T ss_pred             CcEEEE-eccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc-----cc--------cccCChHHHHhcCCEEEE
Confidence            466666 45999999999999999999999977655433 2222111     11        123344567778999986


Q ss_pred             ec
Q 040253           84 LA   85 (338)
Q Consensus        84 ~a   85 (338)
                      ..
T Consensus        67 AV   68 (211)
T COG2085          67 AV   68 (211)
T ss_pred             ec
Confidence            54

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.25  E-value=0.001  Score=61.15  Aligned_cols=40  Identities=23%  Similarity=0.242  Sum_probs=35.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      +|+|.|+| .|++|..++..|+++|++|++++++++..+.+
T Consensus         3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l   42 (415)
T PRK11064          3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQHAVDTI   42 (415)
T ss_pred             ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            57899997 89999999999999999999999987766553

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.24  E-value=0.004  Score=50.19  Aligned_cols=67  Identities=24%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|.|+| .|-||+.+++.|...|.+|++++|..........        ..+        ...++.+++..+|+|+.
T Consensus        35 ~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~--------~~~--------~~~~l~ell~~aDiv~~   97 (178)
T PF02826_consen   35 RGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE--------FGV--------EYVSLDELLAQADIVSL   97 (178)
T ss_dssp             TTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH--------TTE--------EESSHHHHHHH-SEEEE
T ss_pred             CCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhccc--------ccc--------eeeehhhhcchhhhhhh
Confidence            468999997 8999999999999999999999998765441111        011        23466788889999988


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus        98 ~~pl  101 (178)
T PF02826_consen   98 HLPL  101 (178)
T ss_dssp             -SSS
T ss_pred             hhcc
Confidence            8764

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd05295 MDH_like Malate dehydrogenase-like

Probab=97.24  E-value=0.00077  Score=61.72  Aligned_cols=175  Identities=16%  Similarity=0.141  Sum_probs=101.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC---C--CeEEEEEcCCC-cHHHHHH----Hhc-C-CCCCCcEEEEecccCCCCCch
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER---G--YAVRATVRDPD-NKKKVKH----LLE-L-PKASTHLTLWKADLAEEGNFD   72 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~---g--~~V~~~~r~~~-~~~~~~~----~~~-~-~~~~~~~~~~~~Dl~d~~~~~   72 (338)
                      +-+|+||||+|.||.+|+-.+++-   |  ..|.+.--+.+ ..+.++.    +.. . +.. .++.+..       ...
T Consensus       123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll-~~v~i~~-------~~~  194 (452)
T cd05295         123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLL-RGISVTT-------DLD  194 (452)
T ss_pred             ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhc-CCcEEEE-------CCH
Confidence            468999999999999999999873   4  33333322221 1111111    110 0 100 1222221       224


Q ss_pred             hhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCC-ccEEEEecC-ceeeeccCCCCCCcCCCCCCch
Q 040253           73 EPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT-VRRLVFTSS-AGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        73 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~Ss-~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      ++++++|+||-+||.......+. .+.++.|+.....+.+++.++.. -.+++.+.| ..-.     .....-...    
T Consensus       195 ea~~daDvvIitag~prk~G~~R-~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~-----~t~i~~k~a----  264 (452)
T cd05295         195 VAFKDAHVIVLLDDFLIKEGEDL-EGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNL-----KTSILIKYA----  264 (452)
T ss_pred             HHhCCCCEEEECCCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHH-----HHHHHHHHc----
Confidence            77889999999999755433333 47899999999999999988873 144554443 1100     000000000    


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS  201 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~  201 (338)
                          |-.++....|.+.+..-++...++++.+++...|+-..|.|....+.
T Consensus       265 ----pgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sq  311 (452)
T cd05295         265 ----PSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGGNT  311 (452)
T ss_pred             ----CCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCCce
Confidence                01113344555556655667777777888888887778888764443

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.24  E-value=0.00041  Score=55.11  Aligned_cols=66  Identities=18%  Similarity=0.210  Sum_probs=48.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||+|.++| .|-+|+.++++|+++|++|.+.+|++++.+.+...        +       ..-.++..++++++|+|+-+
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--------g-------~~~~~s~~e~~~~~dvvi~~   64 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--------G-------AEVADSPAEAAEQADVVILC   64 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--------T-------EEEESSHHHHHHHBSEEEE-
T ss_pred             CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--------h-------hhhhhhhhhHhhcccceEee
Confidence            68999998 79999999999999999999999987766555431        2       22234556777788999877


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        65 v~   66 (163)
T PF03446_consen   65 VP   66 (163)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.23  E-value=0.0059  Score=53.49  Aligned_cols=164  Identities=13%  Similarity=0.090  Sum_probs=94.7

Q ss_pred             EeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHH-HHHhc-CCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253           10 VTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKV-KHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus        10 VtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+| +|.||++++..|+..+  .++..++++.+..... .++.. ......++.+..+|       .+.++++|+||-+|
T Consensus         1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-------~~~~~daDivVita   72 (299)
T TIGR01771         1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD-------YSDCKDADLVVITA   72 (299)
T ss_pred             CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC-------HHHHCCCCEEEECC
Confidence            356 6999999999998887  3788898866532221 22211 11111223332222       35788899999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      |.......+. .+.++.|+.....+.+.+.++++...++.+|...-.-    .........          .++....|.
T Consensus        73 g~~rk~g~~R-~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~----t~~~~~~sg----------~p~~~viG~  137 (299)
T TIGR01771        73 GAPQKPGETR-LELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDIL----TYVAWKLSG----------FPKNRVIGS  137 (299)
T ss_pred             CCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHH----HHHHHHHhC----------CCHHHEEec
Confidence            9654333333 4789999999999999998887556677776431100    000000000          001112333


Q ss_pred             -HHHHHHHHHHHHHHHcCccEEEEcCCceeCCC
Q 040253          166 -SKTLAEQAAWKFAEENNIDFISIIPSLVVGPF  197 (338)
Q Consensus       166 -sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~  197 (338)
                       +.+..-++-..+++..+++..-++. .++|..
T Consensus       138 gt~LDs~R~~~~la~~l~v~~~~V~~-~v~GeH  169 (299)
T TIGR01771       138 GTVLDTARLRYLLAEKLGVDPQSVHA-YIIGEH  169 (299)
T ss_pred             cchHHHHHHHHHHHHHhCcCcCeEEE-EEEecC
Confidence             3333445555556667887777775 477875

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.21  E-value=0.00088  Score=52.63  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=50.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|+|+|+ |.+|..+++.|.+.| ++|.+.+|+++..........       ...+..+..   +..+.++++|+||
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~-------~~~~~~~~~---~~~~~~~~~Dvvi   86 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG-------ELGIAIAYL---DLEELLAEADLII   86 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh-------hcccceeec---chhhccccCCEEE
Confidence            3589999996 999999999999986 889999998766554432211       010112222   2334467899999


Q ss_pred             EecccC
Q 040253           83 HLATPM   88 (338)
Q Consensus        83 ~~a~~~   88 (338)
                      .+....
T Consensus        87 ~~~~~~   92 (155)
T cd01065          87 NTTPVG   92 (155)
T ss_pred             eCcCCC
Confidence            998653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.19  E-value=0.0026  Score=54.56  Aligned_cols=67  Identities=21%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEE-cCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATV-RDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      +++|.|+|++|.+|+.+++.+.+. +.++.++. ++++.....               -..++...+++.++++++|+||
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~---------------~~~~i~~~~dl~~ll~~~DvVi   65 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ---------------GALGVAITDDLEAVLADADVLI   65 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---------------CCCCccccCCHHHhccCCCEEE
Confidence            479999999999999999988864 57777654 443322110               1223434566667777899999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      +++.
T Consensus        66 d~t~   69 (257)
T PRK00048         66 DFTT   69 (257)
T ss_pred             ECCC
Confidence            8874

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.16  E-value=0.0038  Score=54.87  Aligned_cols=113  Identities=12%  Similarity=0.109  Sum_probs=69.9

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHH-Hhc-CCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            8 VCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKH-LLE-LPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      |.|+|+ |.+|..++..|+..|. +|.+++++++....... +.. .........     +....++ +.++++|+||.+
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~-----I~~t~d~-~~l~dADiVIit   73 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTK-----VTGTNDY-EDIAGSDVVVIT   73 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeE-----EEEcCCH-HHhCCCCEEEEe
Confidence            568897 9999999999988775 99999998764322111 111 000001111     1111123 457899999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ++.......+. .+.+..|+.....+++.+.+..+...+|.+|.
T Consensus        74 ~g~p~~~~~~r-~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN  116 (300)
T cd01339          74 AGIPRKPGMSR-DDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN  116 (300)
T ss_pred             cCCCCCcCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            98644322222 24667788888899888888763445566654

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.15  E-value=0.0016  Score=58.50  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=29.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (338)
                      +++|+|+||||++|+.+++.|.+... ++.++.++.
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~   38 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE   38 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence            58999999999999999999988754 888875654

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.14  E-value=0.0031  Score=47.49  Aligned_cols=87  Identities=21%  Similarity=0.344  Sum_probs=52.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHH-CCCeEEEEE-cCCCcHH--HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLE-RGYAVRATV-RDPDNKK--KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~-r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |||.|.|++|.+|+.+++.+.+ .+.++.+.. |+++...  ....+...       .  .....-.+++.++++.+|++
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~-------~--~~~~~v~~~l~~~~~~~DVv   71 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGI-------G--PLGVPVTDDLEELLEEADVV   71 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTS-------S--T-SSBEBS-HHHHTTH-SEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCc-------C--CcccccchhHHHhcccCCEE
Confidence            5899999999999999999999 577755554 4442110  00111000       0  11112235677788889999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK  118 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~  118 (338)
                      |.+..+                 ..+...++.+.+++
T Consensus        72 IDfT~p-----------------~~~~~~~~~~~~~g   91 (124)
T PF01113_consen   72 IDFTNP-----------------DAVYDNLEYALKHG   91 (124)
T ss_dssp             EEES-H-----------------HHHHHHHHHHHHHT
T ss_pred             EEcCCh-----------------HHhHHHHHHHHhCC
Confidence            988632                 12456777777777

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.10  E-value=0.005  Score=47.14  Aligned_cols=109  Identities=15%  Similarity=0.224  Sum_probs=67.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCc-------------------HHHHHHHhcCCCCCCcEEEEecc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDN-------------------KKKVKHLLELPKASTHLTLWKAD   64 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~D   64 (338)
                      .++|+|.| .|-+|+.+++.|...|. ++.+++.+.-.                   .+.++.........-+++.+..+
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            46899998 88999999999999996 78888753211                   11111111100111356666666


Q ss_pred             cCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           65 LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        65 l~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      + +.+.+.++++++|+||.+...                ...-..+.+.|++.+ + .+|+.++...+|
T Consensus        81 ~-~~~~~~~~~~~~d~vi~~~d~----------------~~~~~~l~~~~~~~~-~-p~i~~~~~g~~G  130 (135)
T PF00899_consen   81 I-DEENIEELLKDYDIVIDCVDS----------------LAARLLLNEICREYG-I-PFIDAGVNGFYG  130 (135)
T ss_dssp             C-SHHHHHHHHHTSSEEEEESSS----------------HHHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred             c-ccccccccccCCCEEEEecCC----------------HHHHHHHHHHHHHcC-C-CEEEEEeecCEE
Confidence            6 344566777899999987641                111245677888888 4 688777654443

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.06  E-value=0.0046  Score=55.21  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=56.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC---eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY---AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      +.++|.|.||||++|..|++.|.+++|   ++..+.........+..        .+......++.     .+.+.++|+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--------~~~~~~v~~~~-----~~~~~~~D~   72 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--------EGRDYTVEELT-----EDSFDGVDI   72 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--------cCceeEEEeCC-----HHHHcCCCE
Confidence            467999999999999999999998776   33333322221111100        11122222221     134568999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      ||.+++.      . .          +..+...+.+.|  .++|=.|+..-+
T Consensus        73 vf~a~p~------~-~----------s~~~~~~~~~~g--~~VIDlS~~fR~  105 (344)
T PLN02383         73 ALFSAGG------S-I----------SKKFGPIAVDKG--AVVVDNSSAFRM  105 (344)
T ss_pred             EEECCCc------H-H----------HHHHHHHHHhCC--CEEEECCchhhc
Confidence            9977753      1 1          244554554556  468888887655

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.03  E-value=0.0033  Score=54.11  Aligned_cols=100  Identities=12%  Similarity=0.196  Sum_probs=68.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      +++.|.|+|+.| +|+--++.-.+.|++|++++++.. +.+..+.+        +.+.+..-..|++...++.+--|.++
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L--------GAd~fv~~~~d~d~~~~~~~~~dg~~  251 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL--------GADVFVDSTEDPDIMKAIMKTTDGGI  251 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc--------CcceeEEecCCHHHHHHHHHhhcCcc
Confidence            468999999999 999888888888999999999874 44444443        34555433347777777766666666


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      |++....   ..+           ...++++++..|   ++|+++-.
T Consensus       252 ~~v~~~a---~~~-----------~~~~~~~lk~~G---t~V~vg~p  281 (360)
T KOG0023|consen  252 DTVSNLA---EHA-----------LEPLLGLLKVNG---TLVLVGLP  281 (360)
T ss_pred             eeeeecc---ccc-----------hHHHHHHhhcCC---EEEEEeCc
Confidence            6665321   111           234667777766   68887743

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.03  E-value=0.0018  Score=59.92  Aligned_cols=67  Identities=22%  Similarity=0.348  Sum_probs=47.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|.|+||+|.+|..+++.|.+.|++|.+++|+++........       -++.       -..+..+.+.++|+||-+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~-------~gv~-------~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE-------LGVE-------YANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH-------cCCe-------eccCHHHHhccCCEEEEec
Confidence            5899999999999999999999999999999986553222211       1111       1123445667889998776


Q ss_pred             c
Q 040253           86 T   86 (338)
Q Consensus        86 ~   86 (338)
                      .
T Consensus        67 p   67 (437)
T PRK08655         67 P   67 (437)
T ss_pred             C
Confidence            4

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.02  E-value=0.0013  Score=55.09  Aligned_cols=40  Identities=25%  Similarity=0.374  Sum_probs=35.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      |+|.|+||+|.+|+.+++.|.+.|++|.+.+|+++....+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l   40 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEA   40 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHH
Confidence            5899999999999999999999999999999987665444

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.01  E-value=0.0023  Score=55.73  Aligned_cols=43  Identities=19%  Similarity=0.185  Sum_probs=37.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK   44 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   44 (338)
                      |+..+++|.|+| +|.+|..++..|+..|++|++++++++..+.
T Consensus         1 ~~~~~~~V~ViG-aG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~   43 (286)
T PRK07819          1 MSDAIQRVGVVG-AGQMGAGIAEVCARAGVDVLVFETTEELATA   43 (286)
T ss_pred             CCCCccEEEEEc-ccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            666677999998 5999999999999999999999998877554

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.97  E-value=0.0091  Score=48.97  Aligned_cols=109  Identities=16%  Similarity=0.268  Sum_probs=66.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHH----------------------HHHhcCCCCCCcEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKV----------------------KHLLELPKASTHLTLW   61 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~~   61 (338)
                      ..+|+|.|++| +|+++++.|...| .++++++.+.-....+                      +.+.... .+-+++.+
T Consensus        19 ~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN-p~v~i~~~   96 (198)
T cd01485          19 SAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN-PNVKLSIV   96 (198)
T ss_pred             hCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC-CCCEEEEE
Confidence            46899999777 9999999999999 4688887542211110                      0111111 01244555


Q ss_pred             ecccCC-CCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           62 KADLAE-EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        62 ~~Dl~d-~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      ..++.+ .+...+.+.++|+||.+..        +.        .....+-+.|++.+ + .+|+.++.+.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~dvVi~~~d--------~~--------~~~~~ln~~c~~~~-i-p~i~~~~~G~~G  151 (198)
T cd01485          97 EEDSLSNDSNIEEYLQKFTLVIATEE--------NY--------ERTAKVNDVCRKHH-I-PFISCATYGLIG  151 (198)
T ss_pred             ecccccchhhHHHHHhCCCEEEECCC--------CH--------HHHHHHHHHHHHcC-C-CEEEEEeecCEE
Confidence            555542 3345566788999996532        11        11244667888887 5 588888766665

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.97  E-value=0.0084  Score=50.42  Aligned_cols=108  Identities=20%  Similarity=0.171  Sum_probs=64.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCC-------------------cHHHHHH-HhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPD-------------------NKKKVKH-LLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~-------------------~~~~~~~-~~~~~~~~~~~~~~~~   63 (338)
                      .++|+|.| .|-+|+++++.|...|. ++++++.+.-                   +.+.... +.... .+-+++.+..
T Consensus        21 ~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~i~~~~~   98 (228)
T cd00757          21 NARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-PDVEIEAYNE   98 (228)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC-CCCEEEEecc
Confidence            46899998 88999999999999995 6777754221                   1111111 11111 0124555555


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      ++ +.+.+.++++++|+||.+...        .        ..-..+-++|..++ + .+|+.+....+|
T Consensus        99 ~i-~~~~~~~~~~~~DvVi~~~d~--------~--------~~r~~l~~~~~~~~-i-p~i~~g~~g~~g  149 (228)
T cd00757          99 RL-DAENAEELIAGYDLVLDCTDN--------F--------ATRYLINDACVKLG-K-PLVSGAVLGFEG  149 (228)
T ss_pred             ee-CHHHHHHHHhCCCEEEEcCCC--------H--------HHHHHHHHHHHHcC-C-CEEEEEeccCEE
Confidence            55 334556677889999987642        1        11234667788777 4 477776554443

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.94  E-value=0.0012  Score=52.09  Aligned_cols=78  Identities=18%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEecc
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLAT   86 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   86 (338)
                      ||.|+| +|-.|.+++..|..+|++|....|+++..+.+..........+++..-. .+.-..++.++++++|+|+-...
T Consensus         1 KI~ViG-aG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~-~i~~t~dl~~a~~~ad~IiiavP   78 (157)
T PF01210_consen    1 KIAVIG-AGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPE-NIKATTDLEEALEDADIIIIAVP   78 (157)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEET-TEEEESSHHHHHTT-SEEEE-S-
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCc-ccccccCHHHHhCcccEEEeccc
Confidence            688998 8999999999999999999999998866666554433222222222211 22223566788899999986553

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.93  E-value=0.0027  Score=55.13  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=50.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+++++|+|+ |.+|+.++..|...| .+|++++|+.++...+.......   ..+.+   ++    ...+.+.++|+||
T Consensus       122 ~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~---~~~~~---~~----~~~~~~~~~DivI  190 (278)
T PRK00258        122 KGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL---GKAEL---DL----ELQEELADFDLII  190 (278)
T ss_pred             CCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc---cceee---cc----cchhccccCCEEE
Confidence            4678999995 999999999999999 79999999877665554322110   01111   11    2234567799999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      ++...
T Consensus       191 naTp~  195 (278)
T PRK00258        191 NATSA  195 (278)
T ss_pred             ECCcC
Confidence            99864

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.93  E-value=0.0038  Score=55.43  Aligned_cols=115  Identities=17%  Similarity=0.157  Sum_probs=68.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEE-e---cc--cCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLW-K---AD--LAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~---~D--l~d~~~~~~~~~~~d   79 (338)
                      |||.|.| +||+|.-...-|.+.||+|++++.++++-+.+..-. .|-..|+++-+ +   .+  ++-..++.++++..|
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~-~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGI-SPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCC-CCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence            6899997 999999999999999999999999877665543311 11112222111 1   11  333456677888899


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      ++|-+.|.....       .-..++......++.+...-...++|.+=|+
T Consensus        79 v~fIavgTP~~~-------dg~aDl~~V~ava~~i~~~~~~~~vvV~KST  121 (414)
T COG1004          79 VVFIAVGTPPDE-------DGSADLSYVEAVAKDIGEILDGKAVVVIKST  121 (414)
T ss_pred             EEEEEcCCCCCC-------CCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence            998777643321       1223344445555555444323355555443

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.92  E-value=0.0078  Score=53.48  Aligned_cols=100  Identities=18%  Similarity=0.200  Sum_probs=59.4

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHH-CCCe---EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLE-RGYA---VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~-~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      |+...++|.|.||||++|+.+++.|.+ ....   +..+....+....+    ...  ...+.+...   |+    ..+.
T Consensus         1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~----~~~--~~~l~v~~~---~~----~~~~   67 (347)
T PRK06728          1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV----QFK--GREIIIQEA---KI----NSFE   67 (347)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe----eeC--CcceEEEeC---CH----HHhc
Confidence            777778999999999999999999985 5555   54454332222111    000  011222222   22    2346


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      ++|+||.+++.          .       .+..+...+.+.|  ..+|=.||..-+
T Consensus        68 ~~Divf~a~~~----------~-------~s~~~~~~~~~~G--~~VID~Ss~fR~  104 (347)
T PRK06728         68 GVDIAFFSAGG----------E-------VSRQFVNQAVSSG--AIVIDNTSEYRM  104 (347)
T ss_pred             CCCEEEECCCh----------H-------HHHHHHHHHHHCC--CEEEECchhhcC
Confidence            78999987752          1       0345555565566  468878877655

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.88  E-value=0.04  Score=40.90  Aligned_cols=85  Identities=16%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             cEEEEeCCc---hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGAS---GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |+|.|.|++   +..|..+++.|.+.|++|+.+.-+...                   + ....-...+.+.-..+|.++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~-------------------i-~G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE-------------------I-LGIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE-------------------E-TTEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE-------------------E-CcEEeeccccCCCCCCCEEE
Confidence            589999998   889999999999999999988543321                   1 12223344444235789888


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .+...                 ..+..+++.+.+.+ ++.+++.++
T Consensus        61 v~~~~-----------------~~~~~~v~~~~~~g-~~~v~~~~g   88 (116)
T PF13380_consen   61 VCVPP-----------------DKVPEIVDEAAALG-VKAVWLQPG   88 (116)
T ss_dssp             E-S-H-----------------HHHHHHHHHHHHHT--SEEEE-TT
T ss_pred             EEcCH-----------------HHHHHHHHHHHHcC-CCEEEEEcc
Confidence            76542                 11466888888888 888988887

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.88  E-value=0.0041  Score=46.78  Aligned_cols=94  Identities=19%  Similarity=0.262  Sum_probs=51.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEE-cCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATV-RDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .++|-|+| +|.+|.+|.+.|.+.|+.|..+. |+..+........             .+ .....+.+.++.+|++|-
T Consensus        10 ~l~I~iIG-aGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~-------------~~-~~~~~~~~~~~~aDlv~i   74 (127)
T PF10727_consen   10 RLKIGIIG-AGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI-------------GA-GAILDLEEILRDADLVFI   74 (127)
T ss_dssp             --EEEEEC-TSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC---------------TT------TTGGGCC-SEEEE
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc-------------cc-ccccccccccccCCEEEE
Confidence            57999998 59999999999999999988874 5444433332211             11 112223456677898886


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCce
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAG  130 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~  130 (338)
                      +..       ++.          ...+.+.+...   .+-+-++|.|...
T Consensus        75 avp-------Dda----------I~~va~~La~~~~~~~g~iVvHtSGa~  107 (127)
T PF10727_consen   75 AVP-------DDA----------IAEVAEQLAQYGAWRPGQIVVHTSGAL  107 (127)
T ss_dssp             -S--------CCH----------HHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred             Eec-------hHH----------HHHHHHHHHHhccCCCCcEEEECCCCC
Confidence            553       211          34455555554   1135678888653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.87  E-value=0.0025  Score=57.76  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=32.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRD   38 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (338)
                      .+++|.|+||.|.+|..+++.|.+.|+.|.+.+|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            46899999999999999999999999999999875

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.86  E-value=0.0043  Score=57.18  Aligned_cols=80  Identities=19%  Similarity=0.260  Sum_probs=50.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEE-----E-ecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL-----W-KADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~Dl~d~~~~~~~~~~~d   79 (338)
                      |+|.|+| .|++|..++..|.+.|++|++++++++....+..- ..+...++++-     + .+-++-..++.++++++|
T Consensus         1 mkI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g-~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         1 MKIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKG-KSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD   78 (411)
T ss_pred             CEEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcC-CCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence            4799997 89999999999999999999999987665544320 00000011000     0 011212234456678899


Q ss_pred             EEEEeccc
Q 040253           80 GVFHLATP   87 (338)
Q Consensus        80 ~vi~~a~~   87 (338)
                      +||-+...
T Consensus        79 vvii~vpt   86 (411)
T TIGR03026        79 VIIICVPT   86 (411)
T ss_pred             EEEEEeCC
Confidence            99988764

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.86  E-value=0.0058  Score=56.94  Aligned_cols=82  Identities=13%  Similarity=0.135  Sum_probs=51.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEE----ec-ccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLW----KA-DLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~-Dl~d~~~~~~~~~~   77 (338)
                      ||+|.|.| +|++|..++..|.++|  ++|++++.+++..+.+..-. .+...++.+-+    .+ .++-..++.+++++
T Consensus         1 ~m~I~ViG-~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~-~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          1 MVKICCIG-AGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQ-LPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCC-CccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence            47899996 9999999999999884  88999998877655543211 11111111111    01 01112334556778


Q ss_pred             ccEEEEecccC
Q 040253           78 CTGVFHLATPM   88 (338)
Q Consensus        78 ~d~vi~~a~~~   88 (338)
                      +|++|-|.+..
T Consensus        79 advi~I~V~TP   89 (473)
T PLN02353         79 ADIVFVSVNTP   89 (473)
T ss_pred             CCEEEEEeCCC
Confidence            99999888743

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.85  E-value=0.0042  Score=59.67  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=57.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      ..|+|.| .|-+|++++++|.++|++|++++.+++..+..++        .+...+.+|.+|++.++++ ++++|+|+-+
T Consensus       418 ~hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv~  488 (558)
T PRK10669        418 NHALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLLT  488 (558)
T ss_pred             CCEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEEE
Confidence            4577776 9999999999999999999999988776655543        4678999999999888764 4678987755


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus       489 ~~  490 (558)
T PRK10669        489 IP  490 (558)
T ss_pred             cC
Confidence            43

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.84  E-value=0.012  Score=51.51  Aligned_cols=84  Identities=15%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |+.+|.|.||||++|..|++.|.++.+ ++..+..+...                      ++   ......+.++|+||
T Consensus         1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~----------------------~~---~~~~~~~~~~DvvF   55 (313)
T PRK11863          1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK----------------------DA---AARRELLNAADVAI   55 (313)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC----------------------cc---cCchhhhcCCCEEE
Confidence            467999999999999999999988764 55544433211                      11   11224456789998


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT  131 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v  131 (338)
                      .+...          .       .+..+...+.+.+  .++|=.|+..-
T Consensus        56 lalp~----------~-------~s~~~~~~~~~~g--~~VIDlSadfR   85 (313)
T PRK11863         56 LCLPD----------D-------AAREAVALIDNPA--TRVIDASTAHR   85 (313)
T ss_pred             ECCCH----------H-------HHHHHHHHHHhCC--CEEEECChhhh
Confidence            76642          1       0234555555556  46888888653

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=96.79  E-value=0.0062  Score=51.29  Aligned_cols=115  Identities=14%  Similarity=0.078  Sum_probs=73.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeE---EEEEcCCCc--HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAV---RATVRDPDN--KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V---~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (338)
                      .+-||.|.||+|-||+.|.-.|.. ...|   ...+.....  ...+.++        +-.......+-++.++++++++
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~-np~Vs~LaLYDi~~~~GVaaDlSHI--------~T~s~V~g~~g~~~L~~al~~a   97 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKL-NPLVSELALYDIANTPGVAADLSHI--------NTNSSVVGFTGADGLENALKGA   97 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhc-CcccceeeeeecccCCccccccccc--------CCCCceeccCChhHHHHHhcCC
Confidence            356899999999999999877754 3333   333322111  1111111        0011122333456889999999


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |+|+-=||......-.. ++++.+|....+.|..++.+.-+...+.++|.
T Consensus        98 dvVvIPAGVPRKPGMTR-DDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN  146 (345)
T KOG1494|consen   98 DVVVIPAGVPRKPGMTR-DDLFNINAGIVKTLAAAIAKCCPNALILVISN  146 (345)
T ss_pred             CEEEecCCCCCCCCCcH-HHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence            99999998655433333 37899999999999999988764556666664

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.79  E-value=0.0036  Score=54.51  Aligned_cols=69  Identities=16%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|+|+|. |.+|+.+++.|...|.+|++.+|+++.......        .+...+     ..+++.++++++|+||+
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~--------~g~~~~-----~~~~l~~~l~~aDiVin  215 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLARITE--------MGLIPF-----PLNKLEEKVAEIDIVIN  215 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------CCCeee-----cHHHHHHHhccCCEEEE
Confidence            3689999995 889999999999999999999998654332211        112211     22345667789999999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       216 t~P  218 (287)
T TIGR02853       216 TIP  218 (287)
T ss_pred             CCC
Confidence            764

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.78  E-value=0.0044  Score=54.27  Aligned_cols=69  Identities=19%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|+|+|. |.+|..+++.|...|.+|++++|++......+.        .+++++     +.+.+.+.+.++|+||+
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~--------~G~~~~-----~~~~l~~~l~~aDiVI~  216 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLARITE--------MGLSPF-----HLSELAEEVGKIDIIFN  216 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------cCCeee-----cHHHHHHHhCCCCEEEE
Confidence            3689999995 889999999999999999999998654333322        122222     22345677789999999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      ++.
T Consensus       217 t~p  219 (296)
T PRK08306        217 TIP  219 (296)
T ss_pred             CCC
Confidence            763

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.78  E-value=0.019  Score=47.00  Aligned_cols=107  Identities=15%  Similarity=0.221  Sum_probs=64.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHH-------------------H-HHHhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKK-------------------V-KHLLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~   63 (338)
                      .++|+|.|+.| +|+++++.|...|. ++++++.+.-....                   . +.+..... .-+++.+..
T Consensus        21 ~s~VlIiG~gg-lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp-~v~i~~~~~   98 (197)
T cd01492          21 SARILLIGLKG-LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNP-RVKVSVDTD   98 (197)
T ss_pred             hCcEEEEcCCH-HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCC-CCEEEEEec
Confidence            47899998666 99999999999994 68888754221111                   0 11111110 124455555


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      .+.  +...+.++++|+||.+...        .        .....+-++|++.+ + .+|+.++.+-+|
T Consensus        99 ~~~--~~~~~~~~~~dvVi~~~~~--------~--------~~~~~ln~~c~~~~-i-p~i~~~~~G~~G  148 (197)
T cd01492          99 DIS--EKPEEFFSQFDVVVATELS--------R--------AELVKINELCRKLG-V-KFYATGVHGLFG  148 (197)
T ss_pred             Ccc--ccHHHHHhCCCEEEECCCC--------H--------HHHHHHHHHHHHcC-C-CEEEEEecCCEE
Confidence            444  2234567789999966421        1        11244567888888 5 478887766555

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.77  E-value=0.0033  Score=55.93  Aligned_cols=80  Identities=19%  Similarity=0.269  Sum_probs=49.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||+|.|+| +|.+|+.++..|.+.|++|.+++|+++..+.+..........+... ....+.-..+..+.++++|+||-+
T Consensus         1 mmkI~iiG-~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          1 MMKIAVLG-AGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIK-LPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCc-CCCCeEEeCCHHHHHhCCCEEEEe
Confidence            46899998 6999999999999999999999998765554433110000000000 000111123444566789999877


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        79 v~   80 (325)
T PRK00094         79 VP   80 (325)
T ss_pred             CC
Confidence            64

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=96.77  E-value=0.0042  Score=61.93  Aligned_cols=167  Identities=14%  Similarity=0.149  Sum_probs=103.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..|..+|+||-|-.|..|+..|..+|. +++..+|+.-+.... .-+.......-.+.+-..|++..+.-..+++     
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence            357899999999999999999999995 566666654332111 1111111112344455567766665555553     


Q ss_pred             -CccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       -+--|||+|+...     ....++.+...+.-+.++.+|=++.++.= ..+.||.+||.+.-   ..+           
T Consensus      1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscG---RGN----------- 1912 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCG---RGN----------- 1912 (2376)
T ss_pred             ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeeccc---CCC-----------
Confidence             4788999997433     22222233334444566666655555432 25789999997643   111           


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCce
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLV  193 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v  193 (338)
                              ...+.||.+--++|+++.+ ++..|++-+.+.=|.|
T Consensus      1913 --------~GQtNYG~aNS~MERiceq-Rr~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1913 --------AGQTNYGLANSAMERICEQ-RRHEGFPGTAIQWGAI 1947 (2376)
T ss_pred             --------CcccccchhhHHHHHHHHH-hhhcCCCcceeeeecc
Confidence                    2456799999999999876 3445887776665544

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.76  E-value=0.0057  Score=53.98  Aligned_cols=81  Identities=21%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHH-h---c-CCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHL-L---E-LPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~---~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      .++|.|+| +|-+|+.++..|+..|++|++.+++++........ .   . +.............+.-..++.+++.++|
T Consensus         7 i~~VaVIG-aG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD   85 (321)
T PRK07066          7 IKTFAAIG-SGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD   85 (321)
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence            47899997 79999999999999999999999987654432210 0   0 00000000000112222335667888999


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      .|+-++.
T Consensus        86 lViEavp   92 (321)
T PRK07066         86 FIQESAP   92 (321)
T ss_pred             EEEECCc
Confidence            9997764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.75  E-value=0.005  Score=48.90  Aligned_cols=55  Identities=24%  Similarity=0.247  Sum_probs=44.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|+|+|+++.+|..+++.|.++|.+|+++.|+.                             +++.+.+.++|+||.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-----------------------------~~l~~~l~~aDiVIs   93 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-----------------------------KNLKEHTKQADIVIV   93 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-----------------------------hhHHHHHhhCCEEEE
Confidence            468999999887899999999999999999888753                             234456778899998


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +.+.
T Consensus        94 at~~   97 (168)
T cd01080          94 AVGK   97 (168)
T ss_pred             cCCC
Confidence            8764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF08732 HIM1: HIM1; InterPro: IPR014843 HIM1 (high induction of mutagenesis protein 1) plays a role in the control of spontaneous and induced mutagenesis []

Probab=96.73  E-value=0.0036  Score=55.32  Aligned_cols=99  Identities=12%  Similarity=0.118  Sum_probs=65.0

Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      +++.+|.+-|...............+.......|+++..    ..+ .+++|.++|....                    
T Consensus       203 ~i~t~is~LGsts~~a~~s~~~~~~IDy~Lnl~laq~f~~~~~~~~-~K~~vIvTSfn~~--------------------  261 (410)
T PF08732_consen  203 DIKTMISTLGSTSAQAKSSKAARHKIDYQLNLDLAQTFANDIKNTG-NKKLVIVTSFNNN--------------------  261 (410)
T ss_pred             hhhhheecCCCChhhccccccchhhccccccHHHHHHhhhhhccCC-CceEEEEEecCcc--------------------
Confidence            567788887765543332222333455555566666655    555 7899999985332                    


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                         ......+|.+.|...|+-+.......=-..+|+|||.+.|....
T Consensus       262 ---~~s~~f~Yfk~K~~LE~dl~~~l~~~l~~lvILRPGplvG~h~~  305 (410)
T PF08732_consen  262 ---AISSMFPYFKTKGELENDLQNLLPPKLKHLVILRPGPLVGEHGS  305 (410)
T ss_pred             ---hhhhhhhhhHHHHHHHHHHHhhcccccceEEEecCccccCCCCC
Confidence               11244589999999999998754321136899999999998654

It is thought to participate in the control of processing of mutational intermediates appearing during error-prone bypass of DNA damage.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.68  E-value=0.0048  Score=55.04  Aligned_cols=83  Identities=22%  Similarity=0.220  Sum_probs=51.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |+. +|+|.|+| +|-+|+.++..|.+.|++|.+.+|+++..+.+..........++... ...+.-..+..++++.+|+
T Consensus         1 ~~~-~m~I~iIG-~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~-~~~~~~~~~~~e~~~~aD~   77 (328)
T PRK14618          1 MHH-GMRVAVLG-AGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVAL-PAELYPTADPEEALAGADF   77 (328)
T ss_pred             CCC-CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcC-CCCeEEeCCHHHHHcCCCE
Confidence            554 56899997 89999999999999999999999977655554432111000011000 0001112344556678999


Q ss_pred             EEEecc
Q 040253           81 VFHLAT   86 (338)
Q Consensus        81 vi~~a~   86 (338)
                      ||-+..
T Consensus        78 Vi~~v~   83 (328)
T PRK14618         78 AVVAVP   83 (328)
T ss_pred             EEEECc
Confidence            987764

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.68  E-value=0.017  Score=43.29  Aligned_cols=72  Identities=25%  Similarity=0.270  Sum_probs=42.5

Q ss_pred             EEEEeCCchhhHHHHHHHHHHC-CCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            7 TVCVTGASGFIGSWLIMRLLER-GYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||.|+|++|.+|..+++.|.+. +.++.++ +|+.+.........      +++.-+..+..+.+.+.  ..++|+||-+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~DvV~~~   72 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAG------PHLKGEVVLELEPEDFE--ELAVDIVFLA   72 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHC------cccccccccccccCChh--hcCCCEEEEc
Confidence            5889999999999999999985 7788887 43322222222211      22221111222223333  2478999877


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      .+
T Consensus        73 ~~   74 (122)
T smart00859       73 LP   74 (122)
T ss_pred             CC
Confidence            65

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.68  E-value=0.0048  Score=54.17  Aligned_cols=66  Identities=18%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|+|.|+| .|.+|+.+++.|.+.|++|.+.+|+++.......        .++.       -.+++.++++++|+||-+
T Consensus         2 ~~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------~g~~-------~~~~~~e~~~~~d~vi~~   65 (296)
T PRK11559          2 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA--------AGAE-------TASTAKAVAEQCDVIITM   65 (296)
T ss_pred             CceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH--------CCCe-------ecCCHHHHHhcCCEEEEe
Confidence            57899998 8999999999999999999999988765443321        1111       123455677789999977


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        66 vp   67 (296)
T PRK11559         66 LP   67 (296)
T ss_pred             CC
Confidence            64

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.68  E-value=0.019  Score=52.20  Aligned_cols=105  Identities=16%  Similarity=0.155  Sum_probs=63.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC-------------------CcHHHHHH-HhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP-------------------DNKKKVKH-LLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~   63 (338)
                      .++|+|.| +|-+|++++..|...|. ++++++++.                   .+.+.... +.... ..-+++.+..
T Consensus       135 ~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~v~v~~~~~  212 (376)
T PRK08762        135 EARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN-PDVQVEAVQE  212 (376)
T ss_pred             cCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC-CCCEEEEEec
Confidence            46899997 67899999999999995 788888762                   22222211 11111 0123444444


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      .++ .+.+.++++++|+||++...        ..        .-..+-++|.+.+ + .+|+.+...
T Consensus       213 ~~~-~~~~~~~~~~~D~Vv~~~d~--------~~--------~r~~ln~~~~~~~-i-p~i~~~~~g  260 (376)
T PRK08762        213 RVT-SDNVEALLQDVDVVVDGADN--------FP--------TRYLLNDACVKLG-K-PLVYGAVFR  260 (376)
T ss_pred             cCC-hHHHHHHHhCCCEEEECCCC--------HH--------HHHHHHHHHHHcC-C-CEEEEEecc
Confidence            443 23455677899999988642        11        1123667788887 4 477776543

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.67  E-value=0.0045  Score=55.99  Aligned_cols=74  Identities=9%  Similarity=0.093  Sum_probs=53.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ..+|+|+|+ |-+|...++.|...|.+|.+++|++.....+.....        ..+..+..+.+.+.+.+.++|+||++
T Consensus       167 ~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g--------~~v~~~~~~~~~l~~~l~~aDvVI~a  237 (370)
T TIGR00518       167 PGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG--------GRIHTRYSNAYEIEDAVKRADLLIGA  237 (370)
T ss_pred             CceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC--------ceeEeccCCHHHHHHHHccCCEEEEc
Confidence            467999985 899999999999999999999998765444332211        11223444556677788899999998


Q ss_pred             ccc
Q 040253           85 ATP   87 (338)
Q Consensus        85 a~~   87 (338)
                      +..
T Consensus       238 ~~~  240 (370)
T TIGR00518       238 VLI  240 (370)
T ss_pred             ccc
Confidence            753

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.66  E-value=0.0071  Score=58.47  Aligned_cols=72  Identities=11%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      +.|+|+| .|-+|+.+++.|.++|+++++++.+++..+..+.        .+...+.||.++++.++++ ++++|+||-+
T Consensus       401 ~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        401 PQVIIVG-FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK--------YGYKVYYGDATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             CCEEEec-CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------CCCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence            5678876 9999999999999999999999998876665543        3678999999999988775 4689988866


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus       472 ~~  473 (601)
T PRK03659        472 CN  473 (601)
T ss_pred             eC
Confidence            54

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.66  E-value=0.014  Score=51.37  Aligned_cols=65  Identities=17%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|.|.| .|-||+.+++.|...|.+|.+.+|..+..             +++..+    ...+++.++++++|+|+.
T Consensus       135 ~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~-------------~~~~~~----~~~~~l~e~l~~aDvvv~  196 (312)
T PRK15469        135 EDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSW-------------PGVQSF----AGREELSAFLSQTRVLIN  196 (312)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCC-------------CCceee----cccccHHHHHhcCCEEEE
Confidence            368999997 99999999999999999999998865321             111111    134578889999999998


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       197 ~lP  199 (312)
T PRK15469        197 LLP  199 (312)
T ss_pred             CCC
Confidence            775

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.66  E-value=0.031  Score=48.33  Aligned_cols=72  Identities=25%  Similarity=0.232  Sum_probs=45.7

Q ss_pred             CCCC-CcEEEEeCCchhhHHHHHHHHHHC--CCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC
Q 040253            1 MGSI-AETVCVTGASGFIGSWLIMRLLER--GYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         1 m~~~-~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      |++| +++|.|.| .|.||+.+++.|.+.  ++++.++ +|+++.........       +.      ..-.+++.+++.
T Consensus         1 ~~~m~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-------g~------~~~~~~~eell~   66 (271)
T PRK13302          1 MSSRPELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-------RR------PPPVVPLDQLAT   66 (271)
T ss_pred             CCCCCeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-------CC------CcccCCHHHHhc
Confidence            6654 57899998 899999999999873  6777644 45544433322110       00      011234556667


Q ss_pred             CccEEEEecc
Q 040253           77 GCTGVFHLAT   86 (338)
Q Consensus        77 ~~d~vi~~a~   86 (338)
                      ++|+|+-++.
T Consensus        67 ~~D~Vvi~tp   76 (271)
T PRK13302         67 HADIVVEAAP   76 (271)
T ss_pred             CCCEEEECCC
Confidence            8999998876

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.64  E-value=0.0085  Score=51.82  Aligned_cols=72  Identities=14%  Similarity=0.212  Sum_probs=48.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .++++|+|+ |.+|+.++..|.+.|++|.+++|+.++...+.......   ..+....  +.+     ....++|+||++
T Consensus       117 ~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~---~~~~~~~--~~~-----~~~~~~DivIna  185 (270)
T TIGR00507       117 NQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY---GEIQAFS--MDE-----LPLHRVDLIINA  185 (270)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc---CceEEec--hhh-----hcccCccEEEEC
Confidence            578999997 89999999999999999999999876655443322110   1122221  111     123468999999


Q ss_pred             ccc
Q 040253           85 ATP   87 (338)
Q Consensus        85 a~~   87 (338)
                      .+.
T Consensus       186 tp~  188 (270)
T TIGR00507       186 TSA  188 (270)
T ss_pred             CCC
Confidence            874

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.63  E-value=0.0055  Score=54.77  Aligned_cols=75  Identities=21%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----Ccc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----GCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d   79 (338)
                      .++.|||.||+|-+|+..++.+...|...++..++.++.+-.+.+..         -...|..+++..+...+    ++|
T Consensus       157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGA---------d~vvdy~~~~~~e~~kk~~~~~~D  227 (347)
T KOG1198|consen  157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGA---------DEVVDYKDENVVELIKKYTGKGVD  227 (347)
T ss_pred             CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCC---------cEeecCCCHHHHHHHHhhcCCCcc
Confidence            46799999999999999999998888444555566666555554422         12346666443333333    599


Q ss_pred             EEEEeccc
Q 040253           80 GVFHLATP   87 (338)
Q Consensus        80 ~vi~~a~~   87 (338)
                      +|++|++.
T Consensus       228 vVlD~vg~  235 (347)
T KOG1198|consen  228 VVLDCVGG  235 (347)
T ss_pred             EEEECCCC
Confidence            99999985

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.62  E-value=0.015  Score=51.66  Aligned_cols=97  Identities=19%  Similarity=0.204  Sum_probs=61.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-----CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-----RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   78 (338)
                      .+.+|||+||+|-+|..+++.+...|.+|+++++++++.+..+.+        ++..+ .|..+.+.+.+.+     +++
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l--------Ga~~v-i~~~~~~~~~~~~~~~~~~gv  208 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL--------GFDVA-FNYKTVKSLEETLKKASPDGY  208 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------CCCEE-EeccccccHHHHHHHhCCCCe
Confidence            357899999999999999998888899999998876655554332        12111 2222222232222     268


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      |+|+.+.+.          ..       ....++.++..|   +++.++..
T Consensus       209 dvv~d~~G~----------~~-------~~~~~~~l~~~G---~iv~~G~~  239 (325)
T TIGR02825       209 DCYFDNVGG----------EF-------SNTVIGQMKKFG---RIAICGAI  239 (325)
T ss_pred             EEEEECCCH----------HH-------HHHHHHHhCcCc---EEEEecch
Confidence            999988762          10       233455555555   78877654

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.59  E-value=0.011  Score=53.93  Aligned_cols=79  Identities=14%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEE----EecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL----WKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |+|.|.| .|++|..++..|. .|++|++++++++..+.+..-.. +...+.++-    ..+.++...+..++..++|+|
T Consensus         1 mkI~VIG-lGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~-~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v   77 (388)
T PRK15057          1 MKITISG-TGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRIS-PIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYV   77 (388)
T ss_pred             CEEEEEC-CCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCC-CCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence            4788996 9999999996665 59999999998877665543110 000011100    011122222234456788999


Q ss_pred             EEeccc
Q 040253           82 FHLATP   87 (338)
Q Consensus        82 i~~a~~   87 (338)
                      |-+...
T Consensus        78 ii~Vpt   83 (388)
T PRK15057         78 IIATPT   83 (388)
T ss_pred             EEeCCC
Confidence            887653

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.59  E-value=0.0069  Score=52.68  Aligned_cols=66  Identities=21%  Similarity=0.241  Sum_probs=45.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|.|+| .|.+|..++..|.++|++|.+++|+++..+.....        +.    .+  ......+.+.++|+||-+.
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~--------g~----~~--~~~~~~~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER--------GL----VD--EASTDLSLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC--------CC----cc--cccCCHhHhcCCCEEEEcC
Confidence            4799998 89999999999999999999999976654443221        10    01  1111113467899999776


Q ss_pred             c
Q 040253           86 T   86 (338)
Q Consensus        86 ~   86 (338)
                      .
T Consensus        66 p   66 (279)
T PRK07417         66 P   66 (279)
T ss_pred             C
Confidence            4

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=96.59  E-value=0.015  Score=49.30  Aligned_cols=95  Identities=12%  Similarity=0.117  Sum_probs=70.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      +|++|+|.|||+ =|+.+++.|.+.|+.|++.+-.....  ..        ...+.++.+-+.|.+.+.+.++  ++++|
T Consensus         1 ~~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~--~~--------~~~~~v~~G~l~~~~~l~~~l~~~~i~~V   69 (248)
T PRK08057          1 MMPRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGG--PA--------DLPGPVRVGGFGGAEGLAAYLREEGIDLV   69 (248)
T ss_pred             CCceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCC--cc--------cCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence            467999999997 69999999999999888776654322  00        1466888888888888999886  79999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEE
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV  124 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v  124 (338)
                      |+..-        |..      ...+.++.++|++.+ ++.+=
T Consensus        70 IDATH--------PfA------~~is~~a~~ac~~~~-ipyiR   97 (248)
T PRK08057         70 IDATH--------PYA------AQISANAAAACRALG-IPYLR   97 (248)
T ss_pred             EECCC--------ccH------HHHHHHHHHHHHHhC-CcEEE
Confidence            97643        222      223678899999998 76544

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=96.58  E-value=0.015  Score=51.64  Aligned_cols=73  Identities=30%  Similarity=0.264  Sum_probs=48.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh----hhC--Cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE----PIR--GC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~----~~~--~~   78 (338)
                      ..+|||+||+|-+|+..++.+...|..++++..++++.+.+..+..        .. ..|..+.+ +.+    +..  ++
T Consensus       143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGA--------d~-vi~y~~~~-~~~~v~~~t~g~gv  212 (326)
T COG0604         143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGA--------DH-VINYREED-FVEQVRELTGGKGV  212 (326)
T ss_pred             CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCC--------CE-EEcCCccc-HHHHHHHHcCCCCc
Confidence            5799999999999999999999999766666666555444443321        11 11232322 333    332  59


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+|+.+.+.
T Consensus       213 Dvv~D~vG~  221 (326)
T COG0604         213 DVVLDTVGG  221 (326)
T ss_pred             eEEEECCCH
Confidence            999998873

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=96.57  E-value=0.018  Score=51.55  Aligned_cols=43  Identities=26%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK   46 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~   46 (338)
                      .+.+|+|+||+|-+|..+++.+...|.+|++++++.++.+.++
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~  193 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLK  193 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            3579999999999999999988889999999888776655443

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.57  E-value=0.01  Score=48.82  Aligned_cols=41  Identities=27%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      .+|+|+|+|. |.+|+++++.|.+.|++|++.+++++....+
T Consensus        27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~   67 (200)
T cd01075          27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVARA   67 (200)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            3689999995 7999999999999999999988876544433

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08328 hypothetical protein; Provisional

Probab=96.56  E-value=0.032  Score=46.99  Aligned_cols=108  Identities=18%  Similarity=0.198  Sum_probs=65.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH---------------------HHHhcCCCCCCcEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV---------------------KHLLELPKASTHLTLWK   62 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~---------------------~~~~~~~~~~~~~~~~~   62 (338)
                      ..+|+|.| .|-+|+++++.|...|. ++++++.+.-....+                     +.+.... .+-.++.+.
T Consensus        27 ~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~n-p~v~v~~~~  104 (231)
T PRK08328         27 KAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFN-SDIKIETFV  104 (231)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhC-CCCEEEEEe
Confidence            46899998 78899999999999994 788887543211111                     0011111 012445455


Q ss_pred             cccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           63 ADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        63 ~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      ..+ +.+.+.+++++.|+||.+...        .        ..-..+-++|++.+ + .+|+.++.+.+|
T Consensus       105 ~~~-~~~~~~~~l~~~D~Vid~~d~--------~--------~~r~~l~~~~~~~~-i-p~i~g~~~g~~G  156 (231)
T PRK08328        105 GRL-SEENIDEVLKGVDVIVDCLDN--------F--------ETRYLLDDYAHKKG-I-PLVHGAVEGTYG  156 (231)
T ss_pred             ccC-CHHHHHHHHhcCCEEEECCCC--------H--------HHHHHHHHHHHHcC-C-CEEEEeeccCEE
Confidence            554 334456677889999977641        1        11123556777777 4 478877766665

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.56  E-value=0.016  Score=51.98  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=27.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG-YAVRATVRD   38 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   38 (338)
                      ++|.|+|++|++|+++++.|.+.+ .++..+.++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~   34 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS   34 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence            489999999999999999998876 588777543

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=96.56  E-value=0.016  Score=51.51  Aligned_cols=41  Identities=37%  Similarity=0.406  Sum_probs=35.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      ..+++|+||+|.+|..+++.+...|.+|++++++++..+.+
T Consensus       163 ~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~  203 (332)
T cd08259         163 GDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL  203 (332)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            56899999999999999999999999999998876554443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.55  E-value=0.044  Score=42.36  Aligned_cols=105  Identities=21%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcH-------------------HHHHH-HhcCCCCCCcEEEEeccc
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNK-------------------KKVKH-LLELPKASTHLTLWKADL   65 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~~-~~~~~~~~~~~~~~~~Dl   65 (338)
                      +|+|.| .|-+|+++++.|...|. ++.+++.+.-..                   +.... +.... .+-+++.+..++
T Consensus         1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~   78 (143)
T cd01483           1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGI   78 (143)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeec
Confidence            588998 59999999999999996 688887542111                   11111 11111 012344455554


Q ss_pred             CCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           66 AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        66 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      .+.. ..+.+.++|+||.+...                ......+.++|++.+ + .++..++..-.
T Consensus        79 ~~~~-~~~~~~~~diVi~~~d~----------------~~~~~~l~~~~~~~~-i-~~i~~~~~g~~  126 (143)
T cd01483          79 SEDN-LDDFLDGVDLVIDAIDN----------------IAVRRALNRACKELG-I-PVIDAGGLGLG  126 (143)
T ss_pred             Chhh-HHHHhcCCCEEEECCCC----------------HHHHHHHHHHHHHcC-C-CEEEEcCCCcE
Confidence            3322 35667889999987652                112355778888887 4 47777765433

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.55  E-value=0.0057  Score=55.57  Aligned_cols=68  Identities=22%  Similarity=0.309  Sum_probs=52.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      |++|+|+|| |.+|..++..+.+.|++|++++.++......  .        -=+.+.+|..|.+.+.++.+.+|+|..
T Consensus         2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~--~--------ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQ--V--------ADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhH--h--------CceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            578999995 8999999999999999999998865442211  0        014566788899999998889998753

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.52  E-value=0.015  Score=54.32  Aligned_cols=77  Identities=16%  Similarity=0.047  Sum_probs=50.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-HHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-Cc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-GC   78 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~   78 (338)
                      |...+++|+|||++| +|..+++.|++.|++|.+.+++..... ....+..     .++.+..+..  ..   ..+. ++
T Consensus         1 ~~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~-----~g~~~~~~~~--~~---~~~~~~~   69 (447)
T PRK02472          1 TEYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLE-----EGIKVICGSH--PL---ELLDEDF   69 (447)
T ss_pred             CCcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHh-----cCCEEEeCCC--CH---HHhcCcC
Confidence            555678999999988 999999999999999999987653321 1122211     2344443321  11   1233 48


Q ss_pred             cEEEEecccC
Q 040253           79 TGVFHLATPM   88 (338)
Q Consensus        79 d~vi~~a~~~   88 (338)
                      |.||...|..
T Consensus        70 d~vV~s~gi~   79 (447)
T PRK02472         70 DLMVKNPGIP   79 (447)
T ss_pred             CEEEECCCCC
Confidence            9999988754

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.51  E-value=0.029  Score=46.54  Aligned_cols=107  Identities=20%  Similarity=0.290  Sum_probs=63.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC---Cc---------------HHHHHH-HhcCCCCCCcEEEEecc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP---DN---------------KKKVKH-LLELPKASTHLTLWKAD   64 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~---------------~~~~~~-~~~~~~~~~~~~~~~~D   64 (338)
                      ..+|+|.| .|-+|+++++.|...|. ++++++.+.   ++               .+.... +.... ..-+++.+...
T Consensus        28 ~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-p~v~v~~~~~~  105 (212)
T PRK08644         28 KAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-PFVEIEAHNEK  105 (212)
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC-CCCEEEEEeee
Confidence            46899998 78999999999999995 688888752   11               111111 11111 01244555555


Q ss_pred             cCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceee
Q 040253           65 LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTL  132 (338)
Q Consensus        65 l~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~  132 (338)
                      +++ +.+.+.++++|+||.+.-        ..        ..-..+.+.+.+. +  ..+|+.+...-+
T Consensus       106 i~~-~~~~~~~~~~DvVI~a~D--------~~--------~~r~~l~~~~~~~~~--~p~I~~~~~~~~  155 (212)
T PRK08644        106 IDE-DNIEELFKDCDIVVEAFD--------NA--------ETKAMLVETVLEHPG--KKLVAASGMAGY  155 (212)
T ss_pred             cCH-HHHHHHHcCCCEEEECCC--------CH--------HHHHHHHHHHHHhCC--CCEEEeehhhcc
Confidence            543 345567788999997742        11        1123455677766 5  347766554434

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.51  E-value=0.0082  Score=52.67  Aligned_cols=65  Identities=15%  Similarity=0.211  Sum_probs=48.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      ++|.|+| .|.+|..+++.|++.|++|.+.+|+++..+.+...        +       .....+..++++++|+||-+.
T Consensus         2 ~~Ig~IG-lG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~--------g-------~~~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIG-LGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDK--------G-------ATPAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEe-eCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc--------C-------CcccCCHHHHHhcCCEEEEec
Confidence            5899997 99999999999999999999999987765544321        1       112234456777899998776


Q ss_pred             c
Q 040253           86 T   86 (338)
Q Consensus        86 ~   86 (338)
                      .
T Consensus        66 p   66 (296)
T PRK15461         66 P   66 (296)
T ss_pred             C
Confidence            4

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.50  E-value=0.0055  Score=43.72  Aligned_cols=66  Identities=18%  Similarity=0.224  Sum_probs=46.0

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC---CeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG---YAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g---~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ||.|+ |+|.+|+.|++.|++.|   ++|.+. .|++++..++....       ++....      .+..++++..|+||
T Consensus         1 kI~iI-G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-------~~~~~~------~~~~~~~~~advvi   66 (96)
T PF03807_consen    1 KIGII-GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-------GVQATA------DDNEEAAQEADVVI   66 (96)
T ss_dssp             EEEEE-STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-------TTEEES------EEHHHHHHHTSEEE
T ss_pred             CEEEE-CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-------cccccc------CChHHhhccCCEEE
Confidence            57788 59999999999999999   999965 88887766654422       112221      13456677889999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      -+.-
T Consensus        67 lav~   70 (96)
T PF03807_consen   67 LAVK   70 (96)
T ss_dssp             E-S-
T ss_pred             EEEC
Confidence            7764

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06849 hypothetical protein; Provisional

Probab=96.48  E-value=0.01  Score=54.33  Aligned_cols=38  Identities=21%  Similarity=0.026  Sum_probs=34.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      .+|+|||||+...+|..+++.|.+.|++|++++.++..
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~   40 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP   40 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            47899999999999999999999999999999887543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.46  E-value=0.036  Score=44.44  Aligned_cols=76  Identities=21%  Similarity=0.290  Sum_probs=48.3

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC---CcHH---------------HHH-HHhcCCCCCCcEEEEecccC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP---DNKK---------------KVK-HLLELPKASTHLTLWKADLA   66 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~---------------~~~-~~~~~~~~~~~~~~~~~Dl~   66 (338)
                      +|+|.| .|-+|+++++.|...|. ++++++.+.   ++..               ... .+.... ..-+++.+...++
T Consensus         1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln-p~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN-PFVKIEAINIKID   78 (174)
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC-CCCEEEEEEeecC
Confidence            588998 79999999999999996 688888754   1111               111 111111 0124455555553


Q ss_pred             CCCCchhhhCCccEEEEec
Q 040253           67 EEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus        67 d~~~~~~~~~~~d~vi~~a   85 (338)
                      . +.+.+.++++|+||.+.
T Consensus        79 ~-~~~~~~l~~~DlVi~~~   96 (174)
T cd01487          79 E-NNLEGLFGDCDIVVEAF   96 (174)
T ss_pred             h-hhHHHHhcCCCEEEECC
Confidence            3 45667788999999774

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.46  E-value=0.011  Score=55.77  Aligned_cols=81  Identities=19%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhc----CCCCCCcEEE-EecccCCCCCchhhhCCcc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE----LPKASTHLTL-WKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~-~~~Dl~d~~~~~~~~~~~d   79 (338)
                      .|+|.|+| +|.+|+.++..|+..|++|++.+++++....+.....    ....-..... ..+.+.-.+++.++++++|
T Consensus         4 i~kIavIG-~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD   82 (495)
T PRK07531          4 IMKAACIG-GGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD   82 (495)
T ss_pred             cCEEEEEC-cCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence            46899996 9999999999999999999999998776554322100    0000000000 0011222345667788999


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +|+-+..
T Consensus        83 ~Vieavp   89 (495)
T PRK07531         83 WIQESVP   89 (495)
T ss_pred             EEEEcCc
Confidence            9996654

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.45  E-value=0.033  Score=49.15  Aligned_cols=95  Identities=16%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|+|+|+. -+|...++.+...|.+|++++|++++.+..+.+..        ..+. +.+|++...++-+.+|+++.
T Consensus       166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA--------d~~i-~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA--------DHVI-NSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC--------cEEE-EcCCchhhHHhHhhCcEEEE
Confidence            36899999965 89999999998899999999999988776665532        2222 22255555555555999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +++. .     .           ....+++++..|   +++.++-
T Consensus       236 tv~~-~-----~-----------~~~~l~~l~~~G---~~v~vG~  260 (339)
T COG1064         236 TVGP-A-----T-----------LEPSLKALRRGG---TLVLVGL  260 (339)
T ss_pred             CCCh-h-----h-----------HHHHHHHHhcCC---EEEEECC
Confidence            9871 1     0           234556666666   6777664

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.45  E-value=0.0091  Score=52.70  Aligned_cols=72  Identities=21%  Similarity=0.314  Sum_probs=49.2

Q ss_pred             CCCC-CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            1 MGSI-AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         1 m~~~-~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      |+.+ .++|.|+| +|.+|..+++.|.+.|+  +|++++|+++........        ++..   ..  .....+.+.+
T Consensus         1 ~~~~~~~~I~IIG-~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~--------g~~~---~~--~~~~~~~~~~   66 (307)
T PRK07502          1 MSAPLFDRVALIG-IGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL--------GLGD---RV--TTSAAEAVKG   66 (307)
T ss_pred             CCccCCcEEEEEe-eCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC--------CCCc---ee--cCCHHHHhcC
Confidence            6654 47899998 99999999999999884  899999976654433221        1100   00  1223456678


Q ss_pred             ccEEEEecc
Q 040253           78 CTGVFHLAT   86 (338)
Q Consensus        78 ~d~vi~~a~   86 (338)
                      +|+||.+..
T Consensus        67 aDvViiavp   75 (307)
T PRK07502         67 ADLVILCVP   75 (307)
T ss_pred             CCEEEECCC
Confidence            999998875

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.43  E-value=0.0086  Score=51.70  Aligned_cols=66  Identities=15%  Similarity=0.194  Sum_probs=46.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ||+|.|+| .|-+|+.+++.|.+.|   ++|.+.+|+++....+....       ++..       ..+..+.+.++|+|
T Consensus         2 mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~advV   66 (267)
T PRK11880          2 MKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY-------GVRA-------ATDNQEAAQEADVV   66 (267)
T ss_pred             CCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc-------CCee-------cCChHHHHhcCCEE
Confidence            67899998 6999999999999988   78999999875544433210       1111       12334456688998


Q ss_pred             EEec
Q 040253           82 FHLA   85 (338)
Q Consensus        82 i~~a   85 (338)
                      |-+.
T Consensus        67 il~v   70 (267)
T PRK11880         67 VLAV   70 (267)
T ss_pred             EEEc
Confidence            8654

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.43  E-value=0.013  Score=51.89  Aligned_cols=44  Identities=16%  Similarity=0.272  Sum_probs=36.4

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHH
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK   46 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~   46 (338)
                      |+. .++|.|+| +|.+|..++..|+..|++|++++++.+......
T Consensus         1 ~~~-~~~I~vIG-aG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~   44 (311)
T PRK06130          1 MNP-IQNLAIIG-AGTMGSGIAALFARKGLQVVLIDVMEGALERAR   44 (311)
T ss_pred             CCC-ccEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            444 57899997 799999999999999999999999876655443

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.42  E-value=0.014  Score=50.81  Aligned_cols=80  Identities=16%  Similarity=0.154  Sum_probs=47.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcC-CCC-CCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLEL-PKA-STHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ..++++|.|+ |..+++++..|...|. +|++++|+....++.+.+... ... ...+.+  .++.+.+.+.+.+.++|+
T Consensus       123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~--~~~~~~~~l~~~~~~aDi  199 (288)
T PRK12749        123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV--TDLADQQAFAEALASADI  199 (288)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE--echhhhhhhhhhcccCCE
Confidence            3578999996 5559999999998884 899999986522232332211 000 011222  222222234445668999


Q ss_pred             EEEecc
Q 040253           81 VFHLAT   86 (338)
Q Consensus        81 vi~~a~   86 (338)
                      |||+-.
T Consensus       200 vINaTp  205 (288)
T PRK12749        200 LTNGTK  205 (288)
T ss_pred             EEECCC
Confidence            999764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.41  E-value=0.0094  Score=52.09  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=34.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      ++|.|+| .|.+|..++..|+++|++|++++++++.....
T Consensus         2 ~~V~VIG-~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   40 (288)
T PRK09260          2 EKLVVVG-AGVMGRGIAYVFAVSGFQTTLVDIKQEQLESA   40 (288)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence            6899998 59999999999999999999999987765553

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.40  E-value=0.014  Score=51.96  Aligned_cols=65  Identities=20%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|.|.| .|-||+.+++.|...|.+|.+++|.+..... ..        .++        ...++.++++++|+|+.
T Consensus       149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~-~~--------~~~--------~~~~l~ell~~aDiV~l  210 (333)
T PRK13243        149 YGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEAE-KE--------LGA--------EYRPLEELLRESDFVSL  210 (333)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhhH-HH--------cCC--------EecCHHHHHhhCCEEEE
Confidence            368999998 7999999999999999999999886543211 00        011        12356778889999988


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       211 ~lP  213 (333)
T PRK13243        211 HVP  213 (333)
T ss_pred             eCC
Confidence            775

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=96.39  E-value=0.41  Score=41.58  Aligned_cols=90  Identities=16%  Similarity=0.150  Sum_probs=59.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi   82 (338)
                      ..+|+|-|-||.+|+.+.+.|..-|.++. ..-++...               -.. ...+.-..++.++-+.  +|.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v-~~V~p~~~---------------~~~-v~G~~~y~sv~dlp~~~~~Dlav   68 (286)
T TIGR01019         6 DTKVIVQGITGSQGSFHTEQMLAYGTNIV-GGVTPGKG---------------GTT-VLGLPVFDSVKEAVEETGANASV   68 (286)
T ss_pred             CCcEEEecCCcHHHHHHHHHHHhCCCCEE-EEECCCCC---------------cce-ecCeeccCCHHHHhhccCCCEEE
Confidence            56899999999999999999999888733 34444310               001 1233344556666554  79888


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      -+...          .       ....+++.|.+.+ ++.+|.+|+.
T Consensus        69 i~vpa----------~-------~v~~~l~e~~~~G-vk~avIis~G   97 (286)
T TIGR01019        69 IFVPA----------P-------FAADAIFEAIDAG-IELIVCITEG   97 (286)
T ss_pred             EecCH----------H-------HHHHHHHHHHHCC-CCEEEEECCC
Confidence            76642          1       1456777788888 8888877764

ATP citrate lyases appear to form an outgroup.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.38  E-value=0.029  Score=49.08  Aligned_cols=25  Identities=40%  Similarity=0.482  Sum_probs=23.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG   29 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g   29 (338)
                      +++|.|.||||.+|+.+++.|.++.
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~   25 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERH   25 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcC
Confidence            4789999999999999999999965

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.38  E-value=0.008  Score=53.93  Aligned_cols=35  Identities=34%  Similarity=0.507  Sum_probs=31.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      |||+|.|.| +|.+|+.++..|.+.|++|.+++|++
T Consensus         1 ~~mkI~IiG-~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          1 MMARICVLG-AGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             CCceEEEEC-CCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            357899997 99999999999999999999999853

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.37  E-value=0.011  Score=51.23  Aligned_cols=54  Identities=19%  Similarity=0.231  Sum_probs=43.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|+|+|++|.+|+.++..|+++|.+|++..|...                             .+.+.++++|+||+
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~-----------------------------~L~~~~~~aDIvI~  208 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ-----------------------------NLPELVKQADIIVG  208 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch-----------------------------hHHHHhccCCEEEE
Confidence            4789999999999999999999999998888766321                             13344578899999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.|
T Consensus       209 AtG  211 (283)
T PRK14192        209 AVG  211 (283)
T ss_pred             ccC
Confidence            986

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=96.34  E-value=0.0098  Score=54.53  Aligned_cols=72  Identities=18%  Similarity=0.147  Sum_probs=53.2

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccE
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      +..|+|+|+| +|.+|..++..+.+.|++|++++.++......  .       .. ..+..|..|.+.+.++.+  ++|.
T Consensus        10 ~~~~~ilIiG-~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~--~-------ad-~~~~~~~~d~~~l~~~~~~~~id~   78 (395)
T PRK09288         10 PSATRVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--V-------AH-RSHVIDMLDGDALRAVIEREKPDY   78 (395)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCchHH--h-------hh-heEECCCCCHHHHHHHHHHhCCCE
Confidence            3467999998 57899999999999999999999876542211  0       01 245677788887877776  7998


Q ss_pred             EEEec
Q 040253           81 VFHLA   85 (338)
Q Consensus        81 vi~~a   85 (338)
                      |+...
T Consensus        79 vi~~~   83 (395)
T PRK09288         79 IVPEI   83 (395)
T ss_pred             EEEee
Confidence            88654

>PRK07574 formate dehydrogenase; Provisional

Probab=96.31  E-value=0.024  Score=51.36  Aligned_cols=67  Identities=22%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..|+|.|.| .|-||+.+++.|...|.+|.+.+|..........               .++.-..++.++++.+|+|+.
T Consensus       191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~---------------~g~~~~~~l~ell~~aDvV~l  254 (385)
T PRK07574        191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE---------------LGLTYHVSFDSLVSVCDVVTI  254 (385)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh---------------cCceecCCHHHHhhcCCEEEE
Confidence            368999998 7999999999999999999999987533221110               122223457788899999987


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       255 ~lP  257 (385)
T PRK07574        255 HCP  257 (385)
T ss_pred             cCC
Confidence            765

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.30  E-value=0.0068  Score=52.97  Aligned_cols=81  Identities=17%  Similarity=0.242  Sum_probs=50.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhc-C-CCCCCcEEEE--------ecccCCCCCchhh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-L-PKASTHLTLW--------KADLAEEGNFDEP   74 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~--------~~Dl~d~~~~~~~   74 (338)
                      .++|.|+| +|.+|..++..|+..|++|++++++++..+....... . +...++....        ...++-..++.++
T Consensus         3 ~~kIaViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          3 IKNVTVAG-AGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            47899998 6999999999999999999999998765444322100 0 0000000000        0111112445667


Q ss_pred             hCCccEEEEecc
Q 040253           75 IRGCTGVFHLAT   86 (338)
Q Consensus        75 ~~~~d~vi~~a~   86 (338)
                      ++++|+||-+..
T Consensus        82 ~~~aDlVieavp   93 (287)
T PRK08293         82 VKDADLVIEAVP   93 (287)
T ss_pred             hcCCCEEEEecc
Confidence            789999998865

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.29  E-value=0.039  Score=49.66  Aligned_cols=107  Identities=18%  Similarity=0.150  Sum_probs=63.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCc-------------------HHHH-HHHhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDN-------------------KKKV-KHLLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~   63 (338)
                      ..+|+|.| .|-+|+++++.|...|. ++.+++.+.-.                   .+.. +.+..... .-+++.+..
T Consensus        28 ~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np-~v~v~~~~~  105 (355)
T PRK05597         28 DAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP-DVKVTVSVR  105 (355)
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC-CcEEEEEEe
Confidence            46899998 68899999999999994 78888764311                   1111 11111110 124455555


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      .++ .+...++++++|+||.+...        .        ..-..+-++|.+.+ ++ ||+.++..-+
T Consensus       106 ~i~-~~~~~~~~~~~DvVvd~~d~--------~--------~~r~~~n~~c~~~~-ip-~v~~~~~g~~  155 (355)
T PRK05597        106 RLT-WSNALDELRDADVILDGSDN--------F--------DTRHLASWAAARLG-IP-HVWASILGFD  155 (355)
T ss_pred             ecC-HHHHHHHHhCCCEEEECCCC--------H--------HHHHHHHHHHHHcC-CC-EEEEEEecCe
Confidence            554 34455677899999987631        1        11123566788777 44 7776654333

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.29  E-value=0.036  Score=49.24  Aligned_cols=98  Identities=17%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ..++|.|.||||++|..|++.|.++.   .++..+....+....+.    ...  ..+.+     .+.+.  ..+.++|+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~----~~~--~~~~v-----~~~~~--~~~~~~Dv   69 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLR----FGG--KSVTV-----QDAAE--FDWSQAQL   69 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEE----ECC--cceEE-----EeCch--hhccCCCE
Confidence            46799999999999999999999853   35655544333221111    000  01111     11111  12357899


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      ||.+++.          .       .+..++..+.+.|  .++|=.|+..-+.
T Consensus        70 vf~a~p~----------~-------~s~~~~~~~~~~g--~~VIDlS~~fRl~  103 (336)
T PRK08040         70 AFFVAGR----------E-------ASAAYAEEATNAG--CLVIDSSGLFALE  103 (336)
T ss_pred             EEECCCH----------H-------HHHHHHHHHHHCC--CEEEECChHhcCC
Confidence            9877752          1       1345555555566  4688888876653

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.28  E-value=0.022  Score=49.27  Aligned_cols=68  Identities=22%  Similarity=0.194  Sum_probs=46.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC--CCc-hhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE--GNF-DEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~-~~~~~~~d~v   81 (338)
                      +++|+|.| .|.+|+.+++.|.++|+.|.+++++.+.......             .+.++-|.  .+. .....++|+|
T Consensus         3 ~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-------------~~lgv~d~~~~~~~~~~~~~aD~V   68 (279)
T COG0287           3 SMKVGIVG-LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-------------LELGVIDELTVAGLAEAAAEADLV   68 (279)
T ss_pred             CcEEEEEC-CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH-------------hhcCcccccccchhhhhcccCCEE
Confidence            56777766 9999999999999999999888887765433221             12344332  122 4455678999


Q ss_pred             EEecc
Q 040253           82 FHLAT   86 (338)
Q Consensus        82 i~~a~   86 (338)
                      |-+..
T Consensus        69 ivavP   73 (279)
T COG0287          69 IVAVP   73 (279)
T ss_pred             EEecc
Confidence            87764

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.27  E-value=0.0069  Score=55.48  Aligned_cols=72  Identities=11%  Similarity=0.156  Sum_probs=52.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|+|.| +|-.|+.+++.|.+.| .+++++.|+.++...+.....      ..     .....+++.+.+.++|+||
T Consensus       180 ~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~------~~-----~~~~~~~l~~~l~~aDiVI  247 (414)
T PRK13940        180 SSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR------NA-----SAHYLSELPQLIKKADIII  247 (414)
T ss_pred             cCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc------CC-----eEecHHHHHHHhccCCEEE
Confidence            468999998 5999999999999999 479999998766555543211      11     1222345567788899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      ++.+.
T Consensus       248 ~aT~a  252 (414)
T PRK13940        248 AAVNV  252 (414)
T ss_pred             ECcCC
Confidence            99875

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.25  E-value=0.03  Score=49.80  Aligned_cols=63  Identities=19%  Similarity=0.174  Sum_probs=47.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..|+|.|+| .|.||+.+++.|...|.+|.+.+|++.....            .       +.-..++.++++++|+|+-
T Consensus       145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~------------~-------~~~~~~l~ell~~aDiVil  204 (330)
T PRK12480        145 KNMTVAIIG-TGRIGAATAKIYAGFGATITAYDAYPNKDLD------------F-------LTYKDSVKEAIKDADIISL  204 (330)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCChhHhhh------------h-------hhccCCHHHHHhcCCEEEE
Confidence            357899997 8999999999999999999999987543210            0       0112356788889998887


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       205 ~lP  207 (330)
T PRK12480        205 HVP  207 (330)
T ss_pred             eCC
Confidence            664

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.25  E-value=0.021  Score=49.18  Aligned_cols=65  Identities=18%  Similarity=0.242  Sum_probs=47.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH-HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK-KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ++|.++| .|-.|..++++|+++||.|.+.+|++++. ..+...               -..-.+...++..++|+||-+
T Consensus         1 ~kIafIG-LG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~---------------Ga~~a~s~~eaa~~aDvVitm   64 (286)
T COG2084           1 MKIAFIG-LGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAA---------------GATVAASPAEAAAEADVVITM   64 (286)
T ss_pred             CeEEEEc-CchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHc---------------CCcccCCHHHHHHhCCEEEEe
Confidence            4778887 99999999999999999999999998873 322211               111223345677788999887


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        65 v~   66 (286)
T COG2084          65 LP   66 (286)
T ss_pred             cC
Confidence            75

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.23  E-value=0.078  Score=45.68  Aligned_cols=67  Identities=18%  Similarity=0.179  Sum_probs=42.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC--CCeEEE-EEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER--GYAVRA-TVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ||+|.|+| .|.+|+.+++.|.+.  +.++.+ .+|+++........       .       +..-.+++.+++.++|+|
T Consensus         1 mmrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~-------~-------~~~~~~~~~ell~~~DvV   65 (265)
T PRK13304          1 MLKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNLEKAENLASK-------T-------GAKACLSIDELVEDVDLV   65 (265)
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHh-------c-------CCeeECCHHHHhcCCCEE
Confidence            36899999 799999999999876  355444 44554433322210       0       111123455566789999


Q ss_pred             EEecc
Q 040253           82 FHLAT   86 (338)
Q Consensus        82 i~~a~   86 (338)
                      +.++.
T Consensus        66 vi~a~   70 (265)
T PRK13304         66 VECAS   70 (265)
T ss_pred             EEcCC
Confidence            99875

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.23  E-value=0.048  Score=46.70  Aligned_cols=98  Identities=22%  Similarity=0.188  Sum_probs=61.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh----hCCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP----IRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~----~~~~d   79 (338)
                      ...+|+|+|++| +|..+++.+...|.+|+++++++...+.++...        ... ..|..+.+....+    -.++|
T Consensus       134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g--------~~~-~~~~~~~~~~~~~~~~~~~~~d  203 (271)
T cd05188         134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELG--------ADH-VIDYKEEDLEEELRLTGGGGAD  203 (271)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhC--------Cce-eccCCcCCHHHHHHHhcCCCCC
Confidence            357899999999 999999999999999999988765544443221        111 1233333222221    23689


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      +++++++..                .....+++.++..+   +++.++...
T Consensus       204 ~vi~~~~~~----------------~~~~~~~~~l~~~G---~~v~~~~~~  235 (271)
T cd05188         204 VVIDAVGGP----------------ETLAQALRLLRPGG---RIVVVGGTS  235 (271)
T ss_pred             EEEECCCCH----------------HHHHHHHHhcccCC---EEEEEccCC
Confidence            999987631                11234455555444   788777643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.23  E-value=0.016  Score=51.13  Aligned_cols=35  Identities=29%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      ..|+|.|.| +|.+|+.+++.|.+.|++|.+.+|+.
T Consensus         3 ~~m~I~iiG-~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          3 QPKTIAILG-AGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            357899997 89999999999999999999998864

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.22  E-value=0.018  Score=50.07  Aligned_cols=73  Identities=18%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .++|+|+| +|..|++++..|...|. +|++++|+..+.+.+.......  .+.+.+..     .+++.+.+.++|+||+
T Consensus       127 ~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~--~~~~~~~~-----~~~~~~~~~~aDiVIn  198 (284)
T PRK12549        127 LERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR--FPAARATA-----GSDLAAALAAADGLVH  198 (284)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh--CCCeEEEe-----ccchHhhhCCCCEEEE
Confidence            57899998 57799999999999996 8999999877666554332111  01222221     1233455678999999


Q ss_pred             ec
Q 040253           84 LA   85 (338)
Q Consensus        84 ~a   85 (338)
                      +.
T Consensus       199 aT  200 (284)
T PRK12549        199 AT  200 (284)
T ss_pred             CC
Confidence            95

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=96.21  E-value=0.029  Score=52.97  Aligned_cols=107  Identities=19%  Similarity=0.305  Sum_probs=69.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEE--cCCCcHHHHHHHhcCCC-CCCcEEEEecccCCCCCchhhhCCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATV--RDPDNKKKVKHLLELPK-ASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~--r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ..||+|.| +|-+|++++..|++.|. ++.+++  +-..+...+..+..... -++++.+-..+..+.+++.+.+++.|+
T Consensus       129 ~akVlVlG-~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~Di  207 (637)
T TIGR03693       129 NAKILAAG-SGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADW  207 (637)
T ss_pred             cccEEEEe-cCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcE
Confidence            46899998 88899999999999994 666664  33333331222211111 136777777777788899999999999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      |++.+....              ......+.++|.+.+ ...+..+.
T Consensus       208 Vi~vsDdy~--------------~~~Lr~lN~acvkeg-k~~IPai~  239 (637)
T TIGR03693       208 VLYVSDNGD--------------IDDLHALHAFCKEEG-KGFIPAIC  239 (637)
T ss_pred             EEEECCCCC--------------hHHHHHHHHHHHHcC-CCeEEEEE
Confidence            999985211              111456677777777 44444433

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.20  E-value=0.012  Score=51.46  Aligned_cols=80  Identities=23%  Similarity=0.267  Sum_probs=55.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +++|.|+| +|--|++|+..|.++|++|+.-.|+++....+..-..++...|++ .....+.-..++.++++++|+|+-.
T Consensus         1 ~~kI~ViG-aGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i-~lp~~l~at~Dl~~a~~~ad~iv~a   78 (329)
T COG0240           1 MMKIAVIG-AGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGI-LLPPNLKATTDLAEALDGADIIVIA   78 (329)
T ss_pred             CceEEEEc-CChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCc-cCCcccccccCHHHHHhcCCEEEEE
Confidence            47899998 788899999999999999999999887666554332222111211 1222334456778888899998865


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        79 vP   80 (329)
T COG0240          79 VP   80 (329)
T ss_pred             CC
Confidence            53

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.20  E-value=0.017  Score=51.76  Aligned_cols=98  Identities=11%  Similarity=0.068  Sum_probs=54.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHH-CCCe---EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLE-RGYA---VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |++|.|.||||++|+.|++.|++ ....   +..+...... ....   ..    .+-.....++.+.+    .+.++|+
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg-~~~~---~f----~g~~~~v~~~~~~~----~~~~~Di   68 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAG-GAAP---SF----GGKEGTLQDAFDID----ALKKLDI   68 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhC-Cccc---cc----CCCcceEEecCChh----HhcCCCE
Confidence            36999999999999999995555 4555   5554432111 1110   00    11111222222222    3467899


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCcc-EEEEecCceee
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR-RLVFTSSAGTL  132 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~Ss~~v~  132 (338)
                      ||.+++.          .       .+..+...+.+.| .+ .+|=.||..-+
T Consensus        69 vf~a~~~----------~-------~s~~~~~~~~~aG-~~~~VID~Ss~fR~  103 (369)
T PRK06598         69 IITCQGG----------D-------YTNEVYPKLRAAG-WQGYWIDAASTLRM  103 (369)
T ss_pred             EEECCCH----------H-------HHHHHHHHHHhCC-CCeEEEECChHHhC
Confidence            9988763          1       1345666665666 42 47777766544

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.19  E-value=0.046  Score=51.30  Aligned_cols=102  Identities=23%  Similarity=0.262  Sum_probs=65.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC------------C--
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG------------N--   70 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~------------~--   70 (338)
                      +.+|+|+| .|-+|...+..+...|.+|++++++++..+..+.+        +.+++..|..+.+            .  
T Consensus       165 g~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--------GA~~v~i~~~e~~~~~~gya~~~s~~~~  235 (509)
T PRK09424        165 PAKVLVIG-AGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--------GAEFLELDFEEEGGSGDGYAKVMSEEFI  235 (509)
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------CCeEEEeccccccccccchhhhcchhHH
Confidence            67999998 89999999999999999999999988776665553        3344433332210            1  


Q ss_pred             ------chhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           71 ------FDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        71 ------~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                            +.+..+++|+||.+++.....  .+  ..+      +...++.++..+   .++.++.
T Consensus       236 ~~~~~~~~~~~~gaDVVIetag~pg~~--aP--~li------t~~~v~~mkpGg---vIVdvg~  286 (509)
T PRK09424        236 KAEMALFAEQAKEVDIIITTALIPGKP--AP--KLI------TAEMVASMKPGS---VIVDLAA  286 (509)
T ss_pred             HHHHHHHHhccCCCCEEEECCCCCccc--Cc--chH------HHHHHHhcCCCC---EEEEEcc
Confidence                  112224799999999853321  11  110      244555556444   6888875

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.18  E-value=0.01  Score=51.94  Aligned_cols=64  Identities=17%  Similarity=0.282  Sum_probs=47.3

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEecc
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLAT   86 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   86 (338)
                      +|.|+| .|.+|+.+++.|++.|++|++.+|+++....+...        +       .....+..++++++|+||-+..
T Consensus         1 ~IgvIG-~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~--------g-------~~~~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIG-LGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAA--------G-------AVTAETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEE-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------C-------CcccCCHHHHHhcCCEEEEecC
Confidence            477886 89999999999999999999999987655443321        1       1122345567788999998764

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.18  E-value=0.065  Score=45.39  Aligned_cols=105  Identities=20%  Similarity=0.161  Sum_probs=62.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHH--------------------HHHhcCCCCCCc--EEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKV--------------------KHLLELPKASTH--LTLW   61 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~--------------------~~~~~~~~~~~~--~~~~   61 (338)
                      ..+|+|.| .|-+|+++++.|...| -++++++.+.-...-+                    +.+..   .+|.  ++.+
T Consensus        24 ~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~---inp~v~i~~~   99 (240)
T TIGR02355        24 ASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQ---INPHIAINPI   99 (240)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHH---HCCCcEEEEE
Confidence            46899997 8889999999999998 4777777643211100                    11111   1133  4444


Q ss_pred             ecccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           62 KADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        62 ~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      ...+ +.+.+.+++++.|+||.+...        .        ..-..+-++|.+.+ + .+|+.++...+
T Consensus       100 ~~~i-~~~~~~~~~~~~DlVvd~~D~--------~--------~~r~~ln~~~~~~~-i-p~v~~~~~g~~  151 (240)
T TIGR02355       100 NAKL-DDAELAALIAEHDIVVDCTDN--------V--------EVRNQLNRQCFAAK-V-PLVSGAAIRME  151 (240)
T ss_pred             eccC-CHHHHHHHhhcCCEEEEcCCC--------H--------HHHHHHHHHHHHcC-C-CEEEEEecccE
Confidence            3333 234456677889999977631        1        11234567788877 4 47766554333

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=96.18  E-value=0.0058  Score=53.88  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC-CchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG-NFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~d~vi   82 (338)
                      +++|||.| +||+.+.++..|.+++ -+|++.+|...+.+.+-.       ..+++.+..|+.+.+ .+.+.++..|.|+
T Consensus         2 ~~~vlllg-sg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~-------~~~~~av~ldv~~~~~~L~~~v~~~D~vi   73 (445)
T KOG0172|consen    2 KKGVLLLG-SGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVK-------GINIKAVSLDVADEELALRKEVKPLDLVI   73 (445)
T ss_pred             CcceEEec-CccccchHHHHHhhcCCceEEEehhhHHHHHHHhc-------CCCccceEEEccchHHHHHhhhcccceee
Confidence            57899997 9999999999998875 588888886655544322       145899999999988 8888888999999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      -+..
T Consensus        74 SLlP   77 (445)
T KOG0172|consen   74 SLLP   77 (445)
T ss_pred             eecc
Confidence            8764

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=96.17  E-value=0.039  Score=45.53  Aligned_cols=184  Identities=13%  Similarity=0.103  Sum_probs=98.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC---C--CeEEEEEcCCC-cHHHHHHHhc-CCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER---G--YAVRATVRDPD-NKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~---g--~~V~~~~r~~~-~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      .-+|+||||+|.||.+|+-.+.+-   |  ..++..-.+-+ ....++.... +..  .-+.... ++--..+-..++++
T Consensus         4 pirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD--~a~PlL~-~Vvattd~~~afkd   80 (332)
T KOG1496|consen    4 PIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQD--CALPLLK-GVVATTDEVEAFKD   80 (332)
T ss_pred             ceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHh--hhhhHHH-hhhcccChhhhhcc
Confidence            468999999999999999988653   2  22333222222 2221211100 000  0000000 11111233457789


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      +|+.|-..+......-+. .+.+..|+...+.=-.++.++. +-.+++.++..+.     .+.-...+..        |.
T Consensus        81 v~~ailvGa~PR~eGMER-kDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaN-----TNali~~k~A--------ps  146 (332)
T KOG1496|consen   81 VDVAILVGAMPRREGMER-KDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPAN-----TNALILKKFA--------PS  146 (332)
T ss_pred             CcEEEEeccccCcccchh-hhHHhhcceeehhhhHHHHHhcCCCceEEEecCccc-----cchhHHhhhC--------CC
Confidence            999998877544322222 2567777766555444444432 1234554443211     1111112222        22


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChh
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPS  205 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~  205 (338)
                      .+..+.-..+++.-.+..-+++.+.|+++.-+.--.|.|.......+..
T Consensus       147 IP~kNfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~  195 (332)
T KOG1496|consen  147 IPEKNFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDV  195 (332)
T ss_pred             CchhcchhhhhhchhhHHHHHHHhhCCchhhcceeEEecccccccCCCc
Confidence            3345667788888888888888888998888888888887765554443

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.16  E-value=0.067  Score=45.48  Aligned_cols=103  Identities=21%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH--------------------HHHhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV--------------------KHLLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~   63 (338)
                      .++|+|.|+ |-+|+++++.|+..|. ++++++.+.-...-+                    +.+..... +-+++.+..
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp-~v~i~~~~~  109 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP-HIAIETINA  109 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC-CCEEEEEec
Confidence            578999985 9999999999999994 788777532111110                    11111110 124455555


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .++ .+.+.+.++++|+||.+...        .        ..-..+-++|..++ + .+|+.++
T Consensus       110 ~i~-~~~~~~~~~~~DiVi~~~D~--------~--------~~r~~ln~~~~~~~-i-p~v~~~~  155 (245)
T PRK05690        110 RLD-DDELAALIAGHDLVLDCTDN--------V--------ATRNQLNRACFAAK-K-PLVSGAA  155 (245)
T ss_pred             cCC-HHHHHHHHhcCCEEEecCCC--------H--------HHHHHHHHHHHHhC-C-EEEEeee
Confidence            443 33455677899999987531        1        11234667777777 4 4666544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.16  E-value=0.007  Score=53.47  Aligned_cols=71  Identities=17%  Similarity=0.154  Sum_probs=50.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|+|.|+ |-+|..+++.|...| .+|++++|++++...+....       +...+     +.+++.+.+.++|+||
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-------g~~~~-----~~~~~~~~l~~aDvVi  243 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-------GGNAV-----PLDELLELLNEADVVI  243 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-------CCeEE-----eHHHHHHHHhcCCEEE
Confidence            4689999985 999999999999876 68999999876554443321       11221     2234556677899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      .+.+.
T Consensus       244 ~at~~  248 (311)
T cd05213         244 SATGA  248 (311)
T ss_pred             ECCCC
Confidence            88774

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.15  E-value=0.01  Score=52.14  Aligned_cols=68  Identities=21%  Similarity=0.238  Sum_probs=47.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|.|+| .|.+|..+++.|.+.|++|.+.+|+++..+.+...        ++..    ..+.+++.+.+..+|+|+-+.
T Consensus         1 M~Ig~IG-lG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~--------g~~~----~~s~~~~~~~~~~~dvIi~~v   67 (298)
T TIGR00872         1 MQLGLIG-LGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED--------RTTG----VANLRELSQRLSAPRVVWVMV   67 (298)
T ss_pred             CEEEEEc-chHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--------CCcc----cCCHHHHHhhcCCCCEEEEEc
Confidence            4799998 79999999999999999999999987765554321        1111    122333334445688888775


Q ss_pred             c
Q 040253           86 T   86 (338)
Q Consensus        86 ~   86 (338)
                      .
T Consensus        68 p   68 (298)
T TIGR00872        68 P   68 (298)
T ss_pred             C
Confidence            4

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.14  E-value=0.01  Score=57.63  Aligned_cols=73  Identities=15%  Similarity=0.229  Sum_probs=59.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~   83 (338)
                      .++|+|.| .|-+|+.+++.|.++|.++++++.+++..+..+.        .+...+.+|.+|++.+.++ ++++|.||-
T Consensus       400 ~~~vII~G-~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~--------~g~~v~~GDat~~~~L~~agi~~A~~vvv  470 (621)
T PRK03562        400 QPRVIIAG-FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAKAEVLIN  470 (621)
T ss_pred             cCcEEEEe-cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh--------cCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence            35788887 8999999999999999999999998877665543        4678999999999987754 457898886


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       471 ~~~  473 (621)
T PRK03562        471 AID  473 (621)
T ss_pred             EeC
Confidence            653

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.10  E-value=0.024  Score=49.78  Aligned_cols=63  Identities=14%  Similarity=0.069  Sum_probs=47.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|.|.| .|-||+.+++.|...|.+|.+.+|+...              .++..      ...++.++++++|+|+.
T Consensus       121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~~--------------~~~~~------~~~~l~ell~~aDiv~~  179 (303)
T PRK06436        121 YNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYVN--------------DGISS------IYMEPEDIMKKSDFVLI  179 (303)
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcc--------------cCccc------ccCCHHHHHhhCCEEEE
Confidence            368999998 8999999999988889999999886432              11110      02356788889999988


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus       180 ~lp~  183 (303)
T PRK06436        180 SLPL  183 (303)
T ss_pred             CCCC
Confidence            7763

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.09  E-value=0.026  Score=49.70  Aligned_cols=39  Identities=21%  Similarity=0.306  Sum_probs=33.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      |+|.|.| +|-+|+.++..|.+.|++|++++|+++..+.+
T Consensus         1 m~I~IiG-~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~   39 (304)
T PRK06522          1 MKIAILG-AGAIGGLFGAALAQAGHDVTLVARRGAHLDAL   39 (304)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCeEEEEECChHHHHHH
Confidence            4799998 59999999999999999999999976554444

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=96.07  E-value=0.04  Score=45.58  Aligned_cols=107  Identities=12%  Similarity=0.137  Sum_probs=68.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCC----------CCCCcEEEEe---cccCC--CCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELP----------KASTHLTLWK---ADLAE--EGN   70 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~~~---~Dl~d--~~~   70 (338)
                      |+|.++| -|..|.+++++|++.||+|++.++++...+.+.......          ...|++.++-   +|+++  .++
T Consensus         1 M~iGmiG-LGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~   79 (300)
T COG1023           1 MQIGMIG-LGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD   79 (300)
T ss_pred             Ccceeec-cchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH
Confidence            4677776 899999999999999999999999887655543322110          1125666654   45555  245


Q ss_pred             chhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           71 FDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        71 ~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      +...+..-|+||.-...           .++    -+.+-.+.+.+.+  -+|+-++|+.
T Consensus        80 la~~L~~GDivIDGGNS-----------~y~----Ds~rr~~~l~~kg--i~flD~GTSG  122 (300)
T COG1023          80 LAPLLSAGDIVIDGGNS-----------NYK----DSLRRAKLLAEKG--IHFLDVGTSG  122 (300)
T ss_pred             HHhhcCCCCEEEECCcc-----------chH----HHHHHHHHHHhcC--CeEEeccCCC
Confidence            66667777888865431           122    2334445556666  3677777653

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.04  E-value=0.008  Score=55.36  Aligned_cols=71  Identities=15%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|+|+|+ |-+|..+++.|...| .+|++++|+.+....+....       +...+     +.+++.+++.++|+||
T Consensus       179 ~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~-------g~~~i-----~~~~l~~~l~~aDvVi  245 (417)
T TIGR01035       179 KGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL-------GGEAV-----KFEDLEEYLAEADIVI  245 (417)
T ss_pred             cCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-------CCeEe-----eHHHHHHHHhhCCEEE
Confidence            3579999985 999999999999999 78999999876544333211       11112     1234566777899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      .+.+.
T Consensus       246 ~aT~s  250 (417)
T TIGR01035       246 SSTGA  250 (417)
T ss_pred             ECCCC
Confidence            98653

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=96.04  E-value=0.047  Score=48.48  Aligned_cols=73  Identities=23%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC---chhhh-CCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN---FDEPI-RGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~-~~~d~   80 (338)
                      +.+|+|+||+|-+|..+++.+...|.+|+++++++++.+.++.+        ++..+ .|..+.+.   +.+.. .++|+
T Consensus       144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~--------Ga~~v-i~~~~~~~~~~v~~~~~~gvd~  214 (329)
T cd08294         144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL--------GFDAV-FNYKTVSLEEALKEAAPDGIDC  214 (329)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------CCCEE-EeCCCccHHHHHHHHCCCCcEE
Confidence            57899999999999999999988999999988877665555432        11111 23222221   21222 36899


Q ss_pred             EEEecc
Q 040253           81 VFHLAT   86 (338)
Q Consensus        81 vi~~a~   86 (338)
                      |+++.+
T Consensus       215 vld~~g  220 (329)
T cd08294         215 YFDNVG  220 (329)
T ss_pred             EEECCC
Confidence            998876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.04  E-value=0.055  Score=45.59  Aligned_cols=36  Identities=36%  Similarity=0.327  Sum_probs=28.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEE-EEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRA-TVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~-~~r~~   39 (338)
                      +|++|.|.|++|-.|+.+++.+.+.+ .++.+ ++|.+
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~   38 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPG   38 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCC
Confidence            36899999999999999999998875 55444 44443

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.03  E-value=0.092  Score=46.11  Aligned_cols=107  Identities=20%  Similarity=0.300  Sum_probs=65.8

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH--------------------HHHhcCCCCCCcEEEEeccc
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV--------------------KHLLELPKASTHLTLWKADL   65 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~Dl   65 (338)
                      +|||.| .|-+|.++++.|+..|. ++.+++.+.-...-+                    +.+.... ..-+++.+..++
T Consensus         1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN-p~v~V~~~~~~i   78 (312)
T cd01489           1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN-PNVKIVAYHANI   78 (312)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC-CCCeEEEEeccC
Confidence            589998 68999999999999984 788777532211111                    1111111 113566667777


Q ss_pred             CCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           66 AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        66 ~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      .+.....+.+++.|+||.+...                ...-..+-+.|...+ + .||..++.+.+|
T Consensus        79 ~~~~~~~~f~~~~DvVv~a~Dn----------------~~ar~~in~~c~~~~-i-p~I~~gt~G~~G  128 (312)
T cd01489          79 KDPDFNVEFFKQFDLVFNALDN----------------LAARRHVNKMCLAAD-V-PLIESGTTGFLG  128 (312)
T ss_pred             CCccchHHHHhcCCEEEECCCC----------------HHHHHHHHHHHHHCC-C-CEEEEecCccee
Confidence            6654345677899999976531                111244567777777 4 477777666554

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=96.01  E-value=0.013  Score=54.16  Aligned_cols=75  Identities=15%  Similarity=0.125  Sum_probs=52.1

Q ss_pred             CCcEEEEeCC----------------chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            4 IAETVCVTGA----------------SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      .+++||||+|                ||..|.+|++.+..+|.+|+.+.- +....       .+   .+++.+..  .+
T Consensus       255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~G-p~~~~-------~p---~~v~~i~V--~t  321 (475)
T PRK13982        255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISG-PVDLA-------DP---QGVKVIHV--ES  321 (475)
T ss_pred             CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeC-CcCCC-------CC---CCceEEEe--cC
Confidence            4689999987                799999999999999999998863 22210       11   34555543  34


Q ss_pred             CCCchhhhC---CccEEEEecccCCCC
Q 040253           68 EGNFDEPIR---GCTGVFHLATPMDFE   91 (338)
Q Consensus        68 ~~~~~~~~~---~~d~vi~~a~~~~~~   91 (338)
                      .+++.+++.   +.|++|++|+...+.
T Consensus       322 a~eM~~av~~~~~~Di~I~aAAVaDyr  348 (475)
T PRK13982        322 ARQMLAAVEAALPADIAIFAAAVADWR  348 (475)
T ss_pred             HHHHHHHHHhhCCCCEEEEecccccee
Confidence            444444442   479999999976644

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.00  E-value=0.047  Score=47.67  Aligned_cols=82  Identities=13%  Similarity=0.110  Sum_probs=51.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .+|.|.||+||.|..|++.|....+ ++..+.-+..                         .++.+..++++++|+||.+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-------------------------~~~~~~~~~~~~~D~vFla   56 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-------------------------KDAAERAKLLNAADVAILC   56 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-------------------------cCcCCHhHhhcCCCEEEEC
Confidence            4899999999999999999988753 5544432211                         0111233455689999877


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT  131 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v  131 (338)
                      ...       .  .        +..++..+.+.+  .++|=.|+..-
T Consensus        57 lp~-------~--~--------s~~~~~~~~~~g--~~VIDlSadfR   84 (310)
T TIGR01851        57 LPD-------D--A--------AREAVSLVDNPN--TCIIDASTAYR   84 (310)
T ss_pred             CCH-------H--H--------HHHHHHHHHhCC--CEEEECChHHh
Confidence            642       0  1        234555555555  46888887643

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.99  E-value=0.021  Score=49.26  Aligned_cols=55  Identities=13%  Similarity=0.152  Sum_probs=45.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|+|+|+++.+|+.++..|.++|.+|++..++.                             ..+.+.++++|+||.
T Consensus       157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-----------------------------~~l~~~~~~ADIVIs  207 (286)
T PRK14175        157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-----------------------------KDMASYLKDADVIVS  207 (286)
T ss_pred             CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-----------------------------hhHHHHHhhCCEEEE
Confidence            478999999999999999999999999999886532                             124566778899998


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      ..+.
T Consensus       208 Avg~  211 (286)
T PRK14175        208 AVGK  211 (286)
T ss_pred             CCCC
Confidence            8875

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.99  E-value=0.069  Score=48.31  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=62.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCc-------------------HHHH-HHHhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDN-------------------KKKV-KHLLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~-~~~~~~~~~~~~~~~~~~   63 (338)
                      ..+|+|.| .|-+|+++++.|...|. ++++++.+.-.                   .+.. +.+.... ..-+++.+..
T Consensus        41 ~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n-p~v~i~~~~~  118 (370)
T PRK05600         41 NARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ-PDIRVNALRE  118 (370)
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC-CCCeeEEeee
Confidence            46899998 78899999999999994 88888864211                   1111 1111111 0124555555


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      .++ .+...++++++|+||.+...        .        ..-..+-++|...+ ++ +|+.+..
T Consensus       119 ~i~-~~~~~~~~~~~DlVid~~Dn--------~--------~~r~~in~~~~~~~-iP-~v~~~~~  165 (370)
T PRK05600        119 RLT-AENAVELLNGVDLVLDGSDS--------F--------ATKFLVADAAEITG-TP-LVWGTVL  165 (370)
T ss_pred             ecC-HHHHHHHHhCCCEEEECCCC--------H--------HHHHHHHHHHHHcC-CC-EEEEEEe
Confidence            553 34566778899999987641        1        11233456777777 44 6666543

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.94  E-value=0.089  Score=49.17  Aligned_cols=30  Identities=27%  Similarity=0.310  Sum_probs=26.4

Q ss_pred             EeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253           10 VTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus        10 VtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      |+||+|-+|..+++.|...|.+|+...+..
T Consensus        43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~   72 (450)
T PRK08261         43 LVGGAGRLAEALAALLAGLGYDVVANNDGG   72 (450)
T ss_pred             EEccCchhHHHHHHHHhhCCCeeeecCccc
Confidence            888899999999999999999999875543

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.93  E-value=0.063  Score=44.17  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|+|+|| |-+|...++.|++.|++|+++.+....  .+..+...    ..+.+..-++.     ...+.++|+||-
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~--~l~~l~~~----~~i~~~~~~~~-----~~~l~~adlVia   76 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTE--NLVKLVEE----GKIRWKQKEFE-----PSDIVDAFLVIA   76 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCH--HHHHHHhC----CCEEEEecCCC-----hhhcCCceEEEE
Confidence            4689999985 999999999999999999998765432  22222211    23455443222     234567888875


Q ss_pred             ec
Q 040253           84 LA   85 (338)
Q Consensus        84 ~a   85 (338)
                      +.
T Consensus        77 aT   78 (202)
T PRK06718         77 AT   78 (202)
T ss_pred             cC
Confidence            43

>PLN03139 formate dehydrogenase; Provisional

Probab=95.91  E-value=0.051  Score=49.27  Aligned_cols=67  Identities=22%  Similarity=0.192  Sum_probs=48.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|.|.| .|-||+.+++.|...|.+|.+.+|.....+....               ..+.-.+++.+++..+|+|+.
T Consensus       198 ~gktVGIVG-~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~---------------~g~~~~~~l~ell~~sDvV~l  261 (386)
T PLN03139        198 EGKTVGTVG-AGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE---------------TGAKFEEDLDAMLPKCDVVVI  261 (386)
T ss_pred             CCCEEEEEe-ecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhh---------------cCceecCCHHHHHhhCCEEEE
Confidence            468999998 8999999999999999999998886533221110               011123457788889999987


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       262 ~lP  264 (386)
T PLN03139        262 NTP  264 (386)
T ss_pred             eCC
Confidence            754

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.91  E-value=0.01  Score=54.80  Aligned_cols=71  Identities=15%  Similarity=0.213  Sum_probs=50.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|+|+| +|-+|..+++.|...|. +|++.+|++.....+....       +.     +..+.+++.+.+.++|+||
T Consensus       181 ~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-------g~-----~~~~~~~~~~~l~~aDvVI  247 (423)
T PRK00045        181 SGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-------GG-----EAIPLDELPEALAEADIVI  247 (423)
T ss_pred             cCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-------CC-----cEeeHHHHHHHhccCCEEE
Confidence            458999998 59999999999999996 8999999876554433221       11     1112234456677899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      .+.+.
T Consensus       248 ~aT~s  252 (423)
T PRK00045        248 SSTGA  252 (423)
T ss_pred             ECCCC
Confidence            88763

>PLN00203 glutamyl-tRNA reductase

Probab=95.91  E-value=0.013  Score=55.21  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=51.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .++|+|+|+ |-+|..+++.|...|. +|+++.|+.+....+....      ++....   ....+++.+++.++|+||.
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~------~g~~i~---~~~~~dl~~al~~aDVVIs  335 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF------PDVEII---YKPLDEMLACAAEADVVFT  335 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh------CCCceE---eecHhhHHHHHhcCCEEEE
Confidence            689999996 9999999999999995 7999999877665554321      111111   1222345667789999998


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.+
T Consensus       336 AT~  338 (519)
T PLN00203        336 STS  338 (519)
T ss_pred             ccC
Confidence            765

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.90  E-value=0.047  Score=42.90  Aligned_cols=32  Identities=22%  Similarity=0.204  Sum_probs=28.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATV   36 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~   36 (338)
                      .+++|+|.| .|-+|...++.|++.|++|++++
T Consensus        12 ~~~~vlVvG-GG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         12 HNKVVVIIG-GGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEc
Confidence            368999998 89999999999999999999884

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.87  E-value=0.036  Score=48.80  Aligned_cols=38  Identities=37%  Similarity=0.509  Sum_probs=32.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      |+|+|.| +|-+|..++..|.+.|++|.+++| ++..+.+
T Consensus         1 mkI~IiG-~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~   38 (305)
T PRK12921          1 MRIAVVG-AGAVGGTFGGRLLEAGRDVTFLVR-PKRAKAL   38 (305)
T ss_pred             CeEEEEC-CCHHHHHHHHHHHHCCCceEEEec-HHHHHHH
Confidence            5899997 899999999999999999999999 5444433

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.87  E-value=0.061  Score=48.41  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=34.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      +.+|+|+||+|-+|..+++.+...|.+|+++++++++.+.+
T Consensus       159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~  199 (348)
T PLN03154        159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL  199 (348)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            57899999999999999998888999998888776554443

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.82  E-value=0.02  Score=49.79  Aligned_cols=76  Identities=14%  Similarity=0.068  Sum_probs=50.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++++|.| +|-.|+.++..|.+.|. +|++++|+.++...+.......   ..+..    +...+++...+.++|+||
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~---~~~~~----~~~~~~~~~~~~~~DiVI  195 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV---GVITR----LEGDSGGLAIEKAAEVLV  195 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc---Cccee----ccchhhhhhcccCCCEEE
Confidence            357899998 68899999999999995 7999999877666654322110   11111    111122334556789999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      ++...
T Consensus       196 naTp~  200 (282)
T TIGR01809       196 STVPA  200 (282)
T ss_pred             ECCCC
Confidence            99764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.82  E-value=0.029  Score=50.52  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=42.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .++|.|+|.+|.+|+.+++.|.+. +++|+++++..+.                          .....+.+.++|+||-
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~--------------------------~~~~~~~v~~aDlVil   57 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG--------------------------SLDPATLLQRADVLIF   57 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc--------------------------cCCHHHHhcCCCEEEE
Confidence            579999999999999999999875 7899988774210                          1123456678899987


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        58 avP   60 (370)
T PRK08818         58 SAP   60 (370)
T ss_pred             eCC
Confidence            764

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.82  E-value=0.096  Score=43.01  Aligned_cols=77  Identities=23%  Similarity=0.332  Sum_probs=50.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcC---CCcHHHH---------------H-HHhcCCCCCCcEEEEecc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRD---PDNKKKV---------------K-HLLELPKASTHLTLWKAD   64 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~~~---------------~-~~~~~~~~~~~~~~~~~D   64 (338)
                      .++|+|.| .|-+|+.++..|...|. ++++++++   .++....               . .+.... ...+++.+..+
T Consensus        21 ~~~V~IvG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-p~~~i~~~~~~   98 (200)
T TIGR02354        21 QATVAICG-LGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-PYTEIEAYDEK   98 (200)
T ss_pred             CCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEeeee
Confidence            46899998 57799999999999997 79988876   3222110               0 010101 01245555555


Q ss_pred             cCCCCCchhhhCCccEEEEe
Q 040253           65 LAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus        65 l~d~~~~~~~~~~~d~vi~~   84 (338)
                      ++ .+.+.++++++|+||.+
T Consensus        99 i~-~~~~~~~~~~~DlVi~a  117 (200)
T TIGR02354        99 IT-EENIDKFFKDADIVCEA  117 (200)
T ss_pred             CC-HhHHHHHhcCCCEEEEC
Confidence            54 35566778899999976

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=95.78  E-value=0.043  Score=50.68  Aligned_cols=41  Identities=15%  Similarity=0.172  Sum_probs=35.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK   46 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~   46 (338)
                      .+|+|.|+| .|++|..++..|.+ |++|+++++++.+.+.+.
T Consensus         5 ~~mkI~vIG-lGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~   45 (425)
T PRK15182          5 DEVKIAIIG-LGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK   45 (425)
T ss_pred             CCCeEEEEC-cCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH
Confidence            468999997 99999999999876 699999999987766654

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.75  E-value=0.019  Score=50.80  Aligned_cols=38  Identities=26%  Similarity=0.424  Sum_probs=34.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      |.+..|+|+|.| +|-+|..++..|.+.|++|.++.|+.
T Consensus         1 ~~~~~m~I~IiG-~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          1 MDSETPRIGIIG-TGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CCCcCcEEEEEC-CCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            667788999996 89999999999999999999999975

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=95.73  E-value=0.073  Score=47.30  Aligned_cols=73  Identities=30%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh---hh--CCcc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE---PI--RGCT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~--~~~d   79 (338)
                      +.+++|+|++|-+|..+++.+...|.+|++++++......+...        .... ..|..+.+....   ..  .++|
T Consensus       167 ~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~d  237 (342)
T cd08266         167 GETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKEL--------GADY-VIDYRKEDFVREVRELTGKRGVD  237 (342)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------CCCe-EEecCChHHHHHHHHHhCCCCCc
Confidence            56899999999999999999999999999988876544433221        1111 123333332222   22  2689


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      .++++++
T Consensus       238 ~~i~~~g  244 (342)
T cd08266         238 VVVEHVG  244 (342)
T ss_pred             EEEECCc
Confidence            9999987

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.71  E-value=0.11  Score=46.56  Aligned_cols=71  Identities=14%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh---CCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI---RGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~   80 (338)
                      ..+|+|+|+ |-+|...++.+...|. +|+++++++++.+..+.+        ++..+ .|..+. ++.+..   .++|+
T Consensus       170 g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l--------Ga~~v-i~~~~~-~~~~~~~~~g~~D~  238 (343)
T PRK09880        170 GKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM--------GADKL-VNPQND-DLDHYKAEKGYFDV  238 (343)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc--------CCcEE-ecCCcc-cHHHHhccCCCCCE
Confidence            578999985 9999999998888897 688888887665544432        11111 132221 222322   24899


Q ss_pred             EEEecc
Q 040253           81 VFHLAT   86 (338)
Q Consensus        81 vi~~a~   86 (338)
                      ||.++|
T Consensus       239 vid~~G  244 (343)
T PRK09880        239 SFEVSG  244 (343)
T ss_pred             EEECCC
Confidence            999987

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.71  E-value=0.031  Score=48.90  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=34.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK   44 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   44 (338)
                      .++|.|+| +|.+|..++..|+..|++|++++++++..+.
T Consensus         3 i~~I~ViG-aG~mG~~iA~~la~~G~~V~l~d~~~~~l~~   41 (291)
T PRK06035          3 IKVIGVVG-SGVMGQGIAQVFARTGYDVTIVDVSEEILKN   41 (291)
T ss_pred             CcEEEEEC-ccHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            47899997 7999999999999999999999998766543

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.70  E-value=0.023  Score=50.08  Aligned_cols=68  Identities=18%  Similarity=0.183  Sum_probs=53.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +++|.|+| .|.+|+-++..-...|++|++++-+++.....          -.=..+..+.+|.+++.++.+++|+|=.
T Consensus         1 ~~tvgIlG-GGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~----------va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILG-GGQLGRMMALAAARLGIKVIVLDPDADAPAAQ----------VADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEc-CcHHHHHHHHHHHhcCCEEEEecCCCCCchhh----------cccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            57899998 89999999999999999999998765543221          1125567778889999999999998853

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=95.70  E-value=0.069  Score=45.37  Aligned_cols=96  Identities=24%  Similarity=0.302  Sum_probs=67.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |+|||.|||+ =|+.++..|.++|+ |.+.+-..-......      ...+...++.+-+.+.+.+.+.++  +++.||+
T Consensus         1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~~g~~~~~------~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~vID   72 (249)
T PF02571_consen    1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATSYGGELLK------PELPGLEVRVGRLGDEEGLAEFLRENGIDAVID   72 (249)
T ss_pred             CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhhhhHhhhc------cccCCceEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence            7999999997 58999999999998 555443322211110      001456888888889999999885  7999997


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEE
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV  124 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v  124 (338)
                      ..-        |..      ...+.++.++|++.+ ++.+-
T Consensus        73 ATH--------PfA------~~is~na~~a~~~~~-ipylR   98 (249)
T PF02571_consen   73 ATH--------PFA------AEISQNAIEACRELG-IPYLR   98 (249)
T ss_pred             CCC--------chH------HHHHHHHHHHHhhcC-cceEE
Confidence            653        222      223678899999998 76444

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.69  E-value=0.16  Score=43.54  Aligned_cols=105  Identities=24%  Similarity=0.369  Sum_probs=61.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHH----------------HHHHHhc-CCCCCCc--EEEEecc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKK----------------KVKHLLE-LPKASTH--LTLWKAD   64 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~----------------~~~~~~~-~~~~~~~--~~~~~~D   64 (338)
                      ..+|+|.| .|-+|+++++.|+..| .++++++.+.-...                +.+.+.. ....+|.  ++.+. +
T Consensus        30 ~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~-~  107 (268)
T PRK15116         30 DAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD-D  107 (268)
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe-c
Confidence            46899997 8899999999999999 58888886421100                0000000 0111233  33332 2


Q ss_pred             cCCCCCchhhhC-CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           65 LAEEGNFDEPIR-GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        65 l~d~~~~~~~~~-~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      ..+++...+++. ++|+||.+...                +..-..|.++|+..+ ++ ||..+++
T Consensus       108 ~i~~e~~~~ll~~~~D~VIdaiD~----------------~~~k~~L~~~c~~~~-ip-~I~~gGa  155 (268)
T PRK15116        108 FITPDNVAEYMSAGFSYVIDAIDS----------------VRPKAALIAYCRRNK-IP-LVTTGGA  155 (268)
T ss_pred             ccChhhHHHHhcCCCCEEEEcCCC----------------HHHHHHHHHHHHHcC-CC-EEEECCc
Confidence            224455556664 69999977642                111245778888887 54 6655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	338
2c29_D	337	Structure Of Dihydroflavonol Reductase From Vitis V		1e-163
2rh8_A	338	Structure Of Apo Anthocyanidin Reductase From Vitis		7e-86
2p4h_X	322	Crystal Structure Of Vestitone Reductase From Alfal		9e-73
1y1p_A	342	X-Ray Structure Of Aldehyde Reductase With Nadph Le		1e-23
1ujm_A	342	Crystal Structure Of Aldehyde Reductase 2 From Spor		2e-23
3dhn_A	227	Crystal Structure Of The Putative Epimerase Q89z24_		2e-06
1z73_A	358	Crystal Structure Of E. Coli Arna Dehydrogenase (de		2e-05
1z74_A	358	Crystal Structure Of E.Coli Arna Dehydrogenase (Dec		4e-05
1z75_A	358	Crystal Structure Of Arna Dehydrogenase (decarboxyl		5e-05
2bll_A	345	Apo-Structure Of The C-Terminal Decarboxylase Domai		5e-05
1z7b_A	358	Crystal Structure Of E.Coli Arna Dehydrogenase (Dec		5e-05
1u9j_A	358	Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl		5e-05
3ay3_A	267	Crystal Structure Of Glucuronic Acid Dehydrogeanse		9e-05
1z7e_A	660	Crystal Structure Of Full Length Arna Length = 660		1e-04
1i3k_A	348	Molecular Basis For Severe Epimerase-Deficiency Gal		3e-04
3a1n_A	317	Crystal Structure Of L-Threonine Dehydrogenase From		3e-04
1hzj_A	348	Human Udp-Galactose 4-Epimerase: Accommodation Of U		4e-04
2q1w_A	333	Crystal Structure Of The Bordetella Bronchiseptica		4e-04
1ek5_A	348	Structure Of Human Udp-Galactose 4-Epimerase In Com		4e-04
3a9w_A	317	Crystal Structure Of L-Threonine Bound L-Threonine		6e-04

>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera At 1.8 A. Length = 337

Iteration: 1
 Score =  570 bits (1468), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 262/326 (80%), Positives = 301/326 (92%)
Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C  AKTV
Sbjct: 61  WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMT WMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180
Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240
Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSSH   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300
Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLP 326
           GF+FKYSL+DMFTGAVDTCRAKGLLP
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLLP 326

>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis Vinifera Length = 338

Iteration: 1
 Score =  313 bits (803), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 156/329 (47%), Positives = 226/329 (68%), Gaps = 11/329 (3%)
Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
           +T CV G +GF+ S L+  LL++GYAV  TVRDPDN+KKV HLLEL +    L +++ADL
Sbjct: 10  KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELG-DLKIFRADL 68
Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
            +E +F+ PI GC  VFH+ATP+ F S+DPEN++I+P I G+V++M+AC  AK+V+R++ 
Sbjct: 69  TDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVIL 128
Query: 126 TSSAGTLDVEE--HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
           TSSA  + + +      V DE +W+D++F+ S K   W Y  SKTLAE+AAWKFAEENNI
Sbjct: 129 TSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNI 188
Query: 184 DFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV-------HLDDLCS 236
           D I++IP+L+ G  LTS +P S+  A+S IT NE     +K  Q +       H++D+C 
Sbjct: 189 DLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCR 248
Query: 237 AHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKK 296
           AHIF+ E  +A GRYIC +   ++ ELAKFL ++YP++ VPT+F D     K ++ SS+K
Sbjct: 249 AHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSK-LIISSEK 307
Query: 297 LTDLGFKFKYSLDDMFTGAVDTCRAKGLL 325
           L   GF FKY +++++  +V+  +AKGLL
Sbjct: 308 LVKEGFSFKYGIEEIYDESVEYFKAKGLL 336

>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa (Medicago Sativa L.) Length = 322

Iteration: 1
 Score =  270 bits (690), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 136/321 (42%), Positives = 197/321 (61%), Gaps = 5/321 (1%)
Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLA 66
           VCVTG +GF+GSW+I  LLE GY+V  T+R DP+ K+ V  L  LP AS  L  + ADL+
Sbjct: 4   VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
              +F   I GC G+FH A+P+DF   +PE  V + T++G + I++AC N+KTV+R ++T
Sbjct: 64  NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SS   +      K V DE+ WSD+D +RSVK  GW Y VSKTLAE+A  +F E+N ID +
Sbjct: 124 SSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVV 183
Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
           ++I   +VG F+   +P S+  AL  +   +    + +    VH+DD+  AHI+L E+  
Sbjct: 184 TLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRF-HMVHVDDVARAHIYLLENSV 242
Query: 247 AKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNML--FSSKKLTDLGFKF 304
             GRY CS     I E+++ L  KYPE+ + T  +++ E     L   ++KKL D GF F
Sbjct: 243 PGGRYNCSPFIVPIEEMSQLLSAKYPEYQILT-VDELKEIKGARLPDLNTKKLVDAGFDF 301
Query: 305 KYSLDDMFTGAVDTCRAKGLL 325
           KY+++DMF  A+  C+ KG L
Sbjct: 302 KYTIEDMFDDAIQCCKEKGYL 322

>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph Length = 342

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 109/199 (54%), Gaps = 13/199 (6%)
Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V VTGA+GF+ S ++ +LLE GY VR T R       ++   +        T    D+ +
Sbjct: 14  VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK 73
Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
           +G +DE I+G  GV H+A+ + F +K   +EV+ P I G ++ +RA     +V+R V TS
Sbjct: 74  QGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 128 S-AGTLDVEEHRKPVY-DETSWS--DLDFVRSV-----KMTGWMYFVSKTLAEQAAWKFA 178
           S    L  + + + +Y DE SW+   +D  +++     + + W+Y  SKT AE AAWKF 
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFM 191
Query: 179 EENNIDFI--SIIPSLVVG 195
           +EN   F   +++P+  +G
Sbjct: 192 DENKPHFTLNAVLPNYTIG 210

>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From Sporobolomyces Salmonicolor Aku4429 Length = 342

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 108/199 (54%), Gaps = 13/199 (6%)
Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V VTGA+GF+ S ++ +LLE GY VR T R       ++   +        T    D  +
Sbjct: 14  VLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDXLK 73
Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
           +G +DE I+G  GV H+A+ + F +K   +EV+ P I G ++ +RA     +V+R V TS
Sbjct: 74  QGAYDEVIKGAAGVAHIASVVSFSNK--YDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 128 S-AGTLDVEEHRKPVY-DETSWS--DLDFVRSV-----KMTGWMYFVSKTLAEQAAWKFA 178
           S    L  + + + +Y DE SW+   +D  +++     + + W+Y  SKT AE AAWKF 
Sbjct: 132 STVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFX 191
Query: 179 EENNIDFI--SIIPSLVVG 195
           +EN   F   +++P+  +G
Sbjct: 192 DENKPHFTLNAVLPNYTIG 210

>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Consortium Target Btr310 Length = 227

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 77/171 (45%), Gaps = 27/171 (15%)
Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
           + + + GASGF+GS L+   L RG+ V A VR P+ K K++        + HL + KAD+
Sbjct: 5   KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE-KIKIE--------NEHLKVKKADV 55
Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
           +   + DE    C G   + +  +    +P  ++   TI   ++I+   K A  V R + 
Sbjct: 56  S---SLDEVCEVCKGADAVISAFNPGWNNP--DIYDETIKVYLTIIDGVKKA-GVNRFLX 109
Query: 126 TSSAGTL------------DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF 164
              AG+L            +V E+  P         L+F+   K   W++F
Sbjct: 110 VGGAGSLFIAPGLRLXDSGEVPENILPGVKALGEFYLNFLXKEKEIDWVFF 160

>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8   VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V + G +GFIG+ L  RLL E  Y V       D    +   L  P    H    + D++
Sbjct: 16  VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67  EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               + E  ++ C  V  L   ATP+++ +++P   V        + I+R C   K  +R
Sbjct: 69  IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           ++F S+A    +   +   Y +   S+L  V  V    W+Y VSK L ++  W + E+  
Sbjct: 125 IIFPSTAEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
           + F    P   +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198

>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8   VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V + G +GFIG+ L  RLL E  Y V       D    +   L  P    H    + D++
Sbjct: 16  VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67  EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               + E  ++ C  V  L   ATP+++ +++P   V        + I+R C   K  +R
Sbjct: 69  IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           ++F S++    +   +   Y +   S+L  V  V    W+Y VSK L ++  W + E+  
Sbjct: 125 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
           + F    P   +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198

>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8   VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V + G +GFIG+ L  RLL E  Y V       D    +   L  P    H    + D++
Sbjct: 16  VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67  EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               + E  ++ C  V  L   ATP+++ +++P   V        + I+R C   K  +R
Sbjct: 69  IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           ++F S++    +   +   Y +   S+L  V  V    W+Y VSK L ++  W + E+  
Sbjct: 125 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
           + F    P   +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198

>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8   VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V + G +GFIG+ L  RLL E  Y V       D    +   L  P    H    + D++
Sbjct: 3   VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 55
Query: 67  EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               + E  ++ C  V  L   ATP+++ +++P   V        + I+R C   K  +R
Sbjct: 56  IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 111
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           ++F S++    +   +   Y +   S+L  V  V    W+Y VSK L ++  W + E+  
Sbjct: 112 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 167
Query: 183 IDFISIIPSLVVGPFLTS 200
           + F    P   +GP L +
Sbjct: 168 LQFTLFRPFNWMGPRLDN 185

>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8   VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V + G +GFIG+ L  RLL E  Y V       D    +   L  P    H    + D++
Sbjct: 16  VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67  EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               + E  ++ C  V  L   ATP+++ +++P   V        + I+R C   K  +R
Sbjct: 69  IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           ++F S++    +   +   Y +   S+L  V  V    W+Y VSK L ++  W + E+  
Sbjct: 125 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
           + F    P   +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198

>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 8   VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V + G +GFIG+ L  RLL E  Y V       D    +   L  P    H    + D++
Sbjct: 16  VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 68
Query: 67  EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               + E  ++ C  V  L   ATP+++ +++P   V        + I+R C   K  +R
Sbjct: 69  IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 124
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           ++F S++    +   +   Y +   S+L  V  V    W+Y VSK L ++  W + E+  
Sbjct: 125 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 180
Query: 183 IDFISIIPSLVVGPFLTS 200
           + F    P   +GP L +
Sbjct: 181 LQFTLFRPFNWMGPRLDN 198

>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From Chromohalobacter Salexigens Length = 267

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 25/179 (13%)
Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG 69
           VTGA+G +GS           A+R  +    ++ ++  +++L  A  H  +   DLA+  
Sbjct: 7   VTGAAGGVGS-----------AIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQ 55
Query: 70  NFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA 129
              + ++ C G+ HL        + P N++++  I G  ++  A +N     R+VF SS 
Sbjct: 56  AVHDLVKDCDGIIHLGG---VSVERPWNDILQANIIGAYNLYEAARNLGK-PRIVFASS- 110
Query: 130 GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISI 188
                  H    Y  T+  D +  R       +Y +SK   E  A  +  + +I+ ++I
Sbjct: 111 ------NHTIGYYPRTTRIDTEVPRRPDS---LYGLSKCFGEDLASLYYHKFDIETLNI 160

>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 20/196 (10%)
Query: 8   VCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V + G +GFIG+ L  RLL E  Y V       D    +   L  P    H    + D++
Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD---AISRFLNHP----HFHFVEGDIS 370
Query: 67  EEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               + E  ++ C  V  L   ATP+++ +++P   V        + I+R C   K  +R
Sbjct: 371 IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKYRKR 426
Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           ++F S++    +   +   Y +   S+L  V  V    W+Y VSK L ++  W + E+  
Sbjct: 427 IIFPSTSEVYGMCSDK---YFDEDHSNL-IVGPVNKPRWIYSVSKQLLDRVIWAYGEKEG 482
Query: 183 IDFISIIPSLVVGPFL 198
           + F    P   +GP L
Sbjct: 483 LQFTLFRPFNWMGPRL 498

>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 4   IAETVCVTGASGFIGSWLIMRLLERGY----------AVRATVRDPDNKKKVKHLLELPK 53
           +AE V VTG +G+IGS  ++ LLE GY          A R     P++ ++V+ L     
Sbjct: 1   MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL----- 55
Query: 54  ASTHLTLWKADLAEEGNFDEPIRGCT--GVFHLATPMDF-ESKDPENEVIRPTINGMVSI 110
               +   + D+ ++G      +  +   V H A      ES     +  R  + G + +
Sbjct: 56  TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQL 115
Query: 111 MRACKNAKTVRRLVFTSSA 129
           +   K A  V+ LVF+SSA
Sbjct: 116 LEIMK-AHGVKNLVFSSSA 133

>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 50/336 (14%)
Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + VTG+SG IG+ L+  L E+             KK V     + + +  +     D++ 
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKY-----------GKKNVIASDIVQRDTGGIKFITLDVSN 50
Query: 68  EGNFDEPIRGCT--GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
               D  +   +   +FHLA  +  + +       +  +NG  +I+ A K  + V ++V 
Sbjct: 51  RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVI 109
Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
            S+ G    E  +  V   T          +     MY V+K  AE     + E+  +D 
Sbjct: 110 PSTIGVFGPETPKNKVPSIT----------ITRPRTMYGVTKIAAELLGQYYYEKFGLD- 158
Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF------------VHLDD 233
              + SL     ++    P+  T    +   E  Y  +K+ ++            +++ D
Sbjct: 159 ---VRSLRYPGIISYKAEPTAGTTDYAV---EIFYYAVKREKYKCYLAPNRALPMMYMPD 212
Query: 234 LCSAHIFLFEHPNAK----GRYICSSHPATILELAKFLREKYPEFNV--PTEFED-VDEN 286
              A + L+E    K      Y  +++  T  EL   ++E+ PEF +    +F D +   
Sbjct: 213 ALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAAT 272
Query: 287 MKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAK 322
               L SS+   + GF  +Y LD      +D    K
Sbjct: 273 WPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEK 308

>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 4   IAETVCVTGASGFIGSWLIMRLLERGY----------AVRATVRDPDNKKKVKHLLELPK 53
           +AE V VTG +G+IGS  ++ LLE GY          A R     P++ ++V+ L     
Sbjct: 1   MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL----- 55
Query: 54  ASTHLTLWKADLAEEGNFDEPIRGCT--GVFHLATPMDF-ESKDPENEVIRPTINGMVSI 110
               +   + D+ ++G      +  +   V H A      ES     +  R  + G + +
Sbjct: 56  TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQL 115
Query: 111 MRACKNAKTVRRLVFTSSA 129
           +   K A  V+ LVF+SSA
Sbjct: 116 LEIMK-AHGVKNLVFSSSA 133

>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 112/282 (39%), Gaps = 38/282 (13%)
Query: 2   GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLW 61
           GS  + V +TG  G IGS +   LLERG  V     D     + +HL + P    +LT  
Sbjct: 18  GSHMKKVFITGICGQIGSHIAELLLERGDKVVGI--DNFATGRREHLKDHP----NLTFV 71
Query: 62  KADLAEEGNFDEPIRGCT--GVFHLATPMDFESKDPE---NEVIRPTINGMVSIMRACKN 116
           +  +A+    ++ I       V H A       KDP+   N+ +   + G   +  A KN
Sbjct: 72  EGSIADHALVNQLIGDLQPDAVVHTAASY----KDPDDWYNDTLTNCVGGSNVVQAAKKN 127
Query: 117 AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWK 176
              V R V+  +A    V+  ++PV        LD  R+   +   Y +SK+  E     
Sbjct: 128 --NVGRFVYFQTALCYGVKPIQQPVR-------LDHPRNPANSS--YAISKSANED---- 172
Query: 177 FAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
           + E + +DF++   + VVGP   S   P     LS     +  +    +  FV + DL  
Sbjct: 173 YLEYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLS---EGKKCFVTKARRDFVFVKDLAR 229
Query: 237 AHIFLFEHPNAKGRYICSSHPATILELAKFLRE-----KYPE 273
           A +   +       +  S     I EL   + E      YPE
Sbjct: 230 ATVRAVDGVGHGAYHFSSGTDVAIKELYDAVVEAMALPSYPE 271

>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 4   IAETVCVTGASGFIGSWLIMRLLERGY----------AVRATVRDPDNKKKVKHLLELPK 53
           +AE V VTG +G+IGS  ++ LLE GY          A R     P++ ++V+ L     
Sbjct: 1   MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL----- 55
Query: 54  ASTHLTLWKADLAEEGNFDEPIRGCT--GVFHLATPMDF-ESKDPENEVIRPTINGMVSI 110
               +   + D+ ++G      +  +   V H A      ES     +  R  + G + +
Sbjct: 56  TGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQL 115
Query: 111 MRACKNAKTVRRLVFTSSA 129
           +   K A  V+ LVF+SSA
Sbjct: 116 LEIMK-AHGVKNLVFSSSA 133

>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 71/336 (21%), Positives = 129/336 (38%), Gaps = 50/336 (14%)
Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + VTG+SG IG+ L+  L E+             KK V     + + +  +     D++ 
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKY-----------GKKNVIASDIVQRDTGGIKFITLDVSN 50
Query: 68  EGNFDEPIRGCT--GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
               D  +   +   +FHLA  +  + +       +  +NG  +I+ A K  + V ++V 
Sbjct: 51  RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVI 109
Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
            S+ G    E  +  V        +   R   M G    V+K  AE     + E+  +D 
Sbjct: 110 PSTIGVFGPETPKNKV------PSITITRPRTMFG----VTKIAAELLGQYYYEKFGLD- 158
Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF------------VHLDD 233
              + SL     ++    P+  T    +   E  Y  +K+ ++            +++ D
Sbjct: 159 ---VRSLRYPGIISYKAEPTAGTTDYAV---EIFYYAVKREKYKCYLAPNRALPMMYMPD 212
Query: 234 LCSAHIFLFEHPNAK----GRYICSSHPATILELAKFLREKYPEFNV--PTEFED-VDEN 286
              A + L+E    K      Y  +++  T  EL   ++E+ PEF +    +F D +   
Sbjct: 213 ALKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAAT 272
Query: 287 MKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAK 322
               L SS+   + GF  +Y LD      +D    K
Sbjct: 273 WPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEK 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	0.0
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	1e-180
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	1e-180
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	1e-143
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	4e-75
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	1e-64
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	2e-29
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	5e-23
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	5e-23
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	2e-22
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	2e-21
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	7e-21
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	1e-20
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	4e-20
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	9e-20
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	1e-19
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	1e-19
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	2e-19
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	1e-18
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	2e-18
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	3e-18
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	4e-18
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	5e-18
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	6e-18
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	7e-18
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	1e-17
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	5e-17
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	5e-17
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	8e-17
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	5e-16
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	5e-16
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	7e-16
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	1e-15
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	1e-15
1xq6_A	253	Unknown protein; structural genomics, protein stru	3e-15
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	4e-15
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	2e-14
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	6e-14
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	1e-13
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	2e-13
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	6e-13
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	5e-12
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	7e-12
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	8e-12
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	1e-11
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	4e-11
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	4e-10
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	7e-10
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	9e-10
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	1e-09
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	3e-09
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	6e-09
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	1e-08
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	3e-08
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	3e-08
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	1e-07
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	2e-06
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	2e-05
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	6e-05
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	8e-05
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	9e-05
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	3e-04
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	4e-04
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	7e-04
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	8e-04

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score =  530 bits (1368), Expect = 0.0
 Identities = 264/333 (79%), Positives = 303/333 (90%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           MGS +ETVCVTGASGFIGSWL+MRLLERGY VRATVRDP N KKVKHLL+LPKA THLTL
Sbjct: 1   MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
           WKADLA+EG+FDE I+GCTGVFH+ATPMDFESKDPENEVI+PTI GM+ IM++C  AKTV
Sbjct: 61  WKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           RRLVFTSSAGT++++EH+ PVYDE+ WSD++F R+ KMT WMYFVSKTLAEQAAWK+A+E
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF 240
           NNIDFI+IIP+LVVGPF+ SSMPPSLITALSPIT NEAHY II+QGQFVHLDDLC+AHI+
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL 300
           LFE+P A+GRYICSSH   IL+LAK LREKYPE+N+PTEF+ VDEN+K++ FSSKKLTDL
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300

Query: 301 GFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHV 333
           GF+FKYSL+DMFTGAVDTCRAKGLLP   E  V
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLLPPSHEKPV 333

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score =  500 bits (1289), Expect = e-180
 Identities = 135/322 (41%), Positives = 196/322 (60%), Gaps = 3/322 (0%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKAD 64
             VCVTG +GF+GSW+I  LLE GY+V  T+R DP+ K+ V  L  LP AS  L  + AD
Sbjct: 2   GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNAD 61

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           L+   +F   I GC G+FH A+P+DF   +PE  V + T++G + I++AC N+KTV+R +
Sbjct: 62  LSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFI 121

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
           +TSS   +      K V DE+ WSD+D +RSVK  GW Y VSKTLAE+A  +F E+N ID
Sbjct: 122 YTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGID 181

Query: 185 FISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH 244
            +++I   +VG F+   +P S+  AL  +   +    + +    VH+DD+  AHI+L E+
Sbjct: 182 VVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFH-MVHVDDVARAHIYLLEN 240

Query: 245 PNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVD-ENMKNMLFSSKKLTDLGFK 303
               GRY CS     I E+++ L  KYPE+ + T  E  + +  +    ++KKL D GF 
Sbjct: 241 SVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFD 300

Query: 304 FKYSLDDMFTGAVDTCRAKGLL 325
           FKY+++DMF  A+  C+ KG L
Sbjct: 301 FKYTIEDMFDDAIQCCKEKGYL 322

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score =  500 bits (1289), Expect = e-180
 Identities = 156/330 (47%), Positives = 225/330 (68%), Gaps = 11/330 (3%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
           +T CV G +GF+ S L+  LL++GYAV  TVRDPDN+KKV HLLEL +    L +++ADL
Sbjct: 10  KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRADL 68

Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
            +E +F+ PI GC  VFH+ATP+ F S+DPEN++I+P I G+V++M+AC  AK+V+R++ 
Sbjct: 69  TDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVIL 128

Query: 126 TSSAGTLDVEEHRKP--VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
           TSSA  + + +      V DE +W+D++F+ S K   W Y  SKTLAE+AAWKFAEENNI
Sbjct: 129 TSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNI 188

Query: 184 DFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ-------FVHLDDLCS 236
           D I++IP+L+ G  LTS +P S+  A+S IT NE     +K  Q         H++D+C 
Sbjct: 189 DLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCR 248

Query: 237 AHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKK 296
           AHIF+ E  +A GRYIC +   ++ ELAKFL ++YP++ VPT+F D     K ++ SS+K
Sbjct: 249 AHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSK-LIISSEK 307

Query: 297 LTDLGFKFKYSLDDMFTGAVDTCRAKGLLP 326
           L   GF FKY +++++  +V+  +AKGLL 
Sbjct: 308 LVKEGFSFKYGIEEIYDESVEYFKAKGLLQ 337

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score =  407 bits (1048), Expect = e-143
 Identities = 82/340 (24%), Positives = 145/340 (42%), Gaps = 21/340 (6%)

Query: 1   MGSIAE--TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHL 58
              + E   V VTGA+GF+ S ++ +LLE GY VR T R       ++   +        
Sbjct: 5   NAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFE 64

Query: 59  TLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK 118
           T    D+ ++G +DE I+G  GV H+A+ + F   +  +EV+ P I G ++ +RA     
Sbjct: 65  TAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFS--NKYDEVVTPAIGGTLNALRAAAATP 122

Query: 119 TVRRLVFTSSAGTLDVEEHRKP--VYDETSWSDLDFVRS-------VKMTGWMYFVSKTL 169
           +V+R V TSS  +  + +        DE SW+     ++        + + W+Y  SKT 
Sbjct: 123 SVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTE 182

Query: 170 AEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITA--LSPIT-RNEAHYPIIK 224
           AE AAWKF +EN  +    +++P+  +G            +   +S           ++ 
Sbjct: 183 AELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMP 242

Query: 225 QGQFVHLDDLCSAHIFLFEHPNAKG-RYICSSHPATILELAKFLREKYPEFNVPTEFEDV 283
              +V   D+   H+     P  +  R   ++       +    R+ YP    P +F D 
Sbjct: 243 PQYYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQ 302

Query: 284 DENMK--NMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRA 321
            +++   +   S + L  LG     S+++     V +  A
Sbjct: 303 GQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 342

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score =  229 bits (587), Expect = 4e-75
 Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 39/257 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + + GASGF+GS L+   L RG+ V A VR P+          +   + HL + KAD++
Sbjct: 6   KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEK---------IKIENEHLKVKKADVS 56

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
                 E  +G   V     P      +P  ++   TI   ++I+   K A  V R +  
Sbjct: 57  SLDEVCEVCKGADAVISAFNPG---WNNP--DIYDETIKVYLTIIDGVKKAG-VNRFLMV 110

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
             AG+L +    + +               ++   +    K L E       +E  ID++
Sbjct: 111 GGAGSLFIAPGLRLMDSG------------EVPENILPGVKALGEFYLNFLMKEKEIDWV 158

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
              P+  +         P + T    + +++    I+     + ++D  +A I   EHP 
Sbjct: 159 FFSPAADMR--------PGVRTGRYRLGKDDMIVDIVG-NSHISVEDYAAAMIDELEHPK 209

Query: 247 AKGRYIC---SSHPATI 260
                       H    
Sbjct: 210 HHQERFTIGYLEHHHHH 226

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score =  206 bits (527), Expect = 1e-64
 Identities = 55/348 (15%), Positives = 107/348 (30%), Gaps = 51/348 (14%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
             V GA+G +G      +   G+ +    R     +++ +L              A++ +
Sbjct: 16  YAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYL--------EPECRVAEMLD 67

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
               +  +RG  GV   A       +  + E +   +        AC  A+ V R+++  
Sbjct: 68  HAGLERALRGLDGVIFSAGYYPSRPRRWQ-EEVASALGQTNPFYAACLQAR-VPRILYVG 125

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFIS 187
           SA  +       P   E  + D     S+      Y + K   ++ A + A    +  + 
Sbjct: 126 SAYAMPRHPQGLPG-HEGLFYD-----SLPSGKSSYVLCKWALDEQAREQARN-GLPVVI 178

Query: 188 IIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG--QFVHLDDLCSAHIFLFEHP 245
            IP +V+G          +ITA+               G    +   +     +   E  
Sbjct: 179 GIPGMVLGELDIGPTTGRVITAIG-----NGEMTHYVAGQRNVIDAAEAGRGLLMALERG 233

Query: 246 NAKGRYICSSHPATILELAKFLRE---KYPEFNVPTEF---------------------- 280
               RY+ + H   + +L + + E   +     +                          
Sbjct: 234 RIGERYLLTGHNLEMADLTRRIAELLGQPAPQPMSMAMARALATLGRLRYRVSGQLPLLD 293

Query: 281 -EDVDENMKNMLFSSKK-LTDLGFKFKYSLDDMFTGAVDTCRAKGLLP 326
              ++          +K   +LGF    +LDD    A+D  R  G   
Sbjct: 294 ETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRAIDWFRDNGYFN 341

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score =  113 bits (286), Expect = 2e-29
 Identities = 68/335 (20%), Positives = 122/335 (36%), Gaps = 48/335 (14%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + VTG+SG IG+ L+  L E+         D         +++       +     D++ 
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVIASD---------IVQRDTGG--IKFITLDVSN 50

Query: 68  EGNFDEPIR--GCTGVFHLATPMDFES-KDPE--NEVIRPTINGMVSIMRACKNAKTVRR 122
               D  +       +FHLA  +  +  KDP    +V    +NG  +I+ A K  + V +
Sbjct: 51  RDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKV---NMNGTYNILEAAKQHR-VEK 106

Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           +V  S+ G    E  +  V   T          +     M+ V+K  AE     + E+  
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSIT----------ITRPRTMFGVTKIAAELLGQYYYEKFG 156

Query: 183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA----HYPIIKQGQ----FVHLDDL 234
           +D  S+    ++      + P +  T  +      A     Y            +++ D 
Sbjct: 157 LDVRSLRYPGIISY---KAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDA 213

Query: 235 CSAHIFLFEHPNAKGR----YICSSHPATILELAKFLREKYPEFNV---PTEFEDVDENM 287
             A + L+E    K      Y  +++  T  EL   ++E+ PEF +       + +    
Sbjct: 214 LKALVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKEDFRDKIAATW 273

Query: 288 KNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAK 322
              L SS+   + GF  +Y LD      +D    K
Sbjct: 274 PESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEK 308

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score = 96.5 bits (241), Expect = 5e-23
 Identities = 46/330 (13%), Positives = 91/330 (27%), Gaps = 77/330 (23%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + VTG +GF+G +++  +   G                       KA        +D   
Sbjct: 5   IAVTGGTGFLGQYVVESIKNDGNTPIIL----TR-------SIGNKAINDYEYRVSDYTL 53

Query: 68  EGNFDEPIRGCTGVFHLA------TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR 121
           E   ++ +     V HLA        +     +  +  I        ++  AC     + 
Sbjct: 54  EDLINQ-LNDVDAVVHLAATRGSQGKIS----EFHDNEI-----LTQNLYDACYENN-IS 102

Query: 122 RLVFTSSA---GTLD----VEEHR-KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQA 173
            +V+ S+             E+    P                     MY VSK   E  
Sbjct: 103 NIVYASTISAYSDETSLPWNEKELPLPDL-------------------MYGVSKLACEHI 143

Query: 174 AWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG---Q--- 227
              ++ +  +   ++  + + G    ++   +           E    +           
Sbjct: 144 GNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQ--AFHGE---QLTLHANSVAKRE 198

Query: 228 FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKY-----PEFNVPTEFE 281
           F++  D   + I+  +     G + I S    T  E+A  +   +          P   E
Sbjct: 199 FLYAKDAAKSVIYALKQEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANE 258

Query: 282 DVDENMKNMLFSSKKL-TDLGFKFKYSLDD 310
            +     +    S K    L F   Y+   
Sbjct: 259 GI----HSSYMDSSKAKELLDFSTDYNFAT 284

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score = 95.5 bits (238), Expect = 5e-23
 Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 40/229 (17%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
             + VTGA+G +GS +   L    + VR +    D        ++L  A  H  +   DL
Sbjct: 3   NRLLVTGAAGGVGSAIRPHLGTLAHEVRLS----DI-------VDLGAAEAHEEIVACDL 51

Query: 66  AEEGNFDEPIRGCTGVFHLA-TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           A+     + ++ C G+ HL    ++     P N++++  I G  ++  A +N     R+V
Sbjct: 52  ADAQAVHDLVKDCDGIIHLGGVSVE----RPWNDILQANIIGAYNLYEAARNLG-KPRIV 106

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
           F SS  T+        +  E                  Y +SK   E  A  +  + +I+
Sbjct: 107 FASSNHTIGYYPRTTRIDTEVPRRPDSL----------YGLSKCFGEDLASLYYHKFDIE 156

Query: 185 FISIIPSLVVGPFLTSSMPPSLITALSP----------ITRNEAHYPII 223
            ++I                 + T LS               +    ++
Sbjct: 157 TLNIRIGSCFPKPKD---ARMMATWLSVDDFMRLMKRAFVAPKLGCTVV 202

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 93.1 bits (231), Expect = 2e-22
 Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 41/244 (16%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + + GA+G  GS ++     RG+ V A VR+           ++ +    + + + D+ +
Sbjct: 3   IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG---------KITQTHKDINILQKDIFD 53

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
                  +     V                +     +  +  ++          RL+   
Sbjct: 54  LT--LSDLSDQNVVVDAYGISP--------DEAEKHVTSLDHLISVLNGTV-SPRLLVVG 102

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFIS 187
            A +L ++E    + +     +  +  + +            A+Q     + +    +  
Sbjct: 103 GAASLQIDEDGNTLLESKGLREAPYYPTARAQ----------AKQLEHLKSHQAEFSWTY 152

Query: 188 IIPSLVVGPF-LTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
           I PS +  P   T          L                 F+ ++D   A +   E PN
Sbjct: 153 ISPSAMFEPGERTGDYQIGKDHLL----------FGSDGNSFISMEDYAIAVLDEIERPN 202

Query: 247 AKGR 250
               
Sbjct: 203 HLNE 206

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score = 91.8 bits (229), Expect = 2e-21
 Identities = 70/330 (21%), Positives = 126/330 (38%), Gaps = 68/330 (20%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKASTHLTLW 61
            + VTG +GFIGS ++ +L E    +       DN     ++ V              L 
Sbjct: 3   LIVVTGGAGFIGSHVVDKLSE-SNEIVVI----DNLSSGNEEFVNE---------AARLV 48

Query: 62  KADLAEEGNFDEPIRGCTGVFHLATPMD-FES-KDPENEVIRPTINGMVSIMRACKNAKT 119
           KADLA + +  + ++G   V+H+A   D     ++P+ E+ R  +     ++ A + A  
Sbjct: 49  KADLAAD-DIKDYLKGAEEVWHIAANPDVRIGAENPD-EIYRNNVLATYRLLEAMRKAG- 105

Query: 120 VRRLVFTSSA---GTLDV----EEHR-KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAE 171
           V R+VFTS++   G   V    E++   P+                    +Y  SK   E
Sbjct: 106 VSRIVFTSTSTVYGEAKVIPTPEDYPTHPIS-------------------LYGASKLACE 146

Query: 172 QAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ---- 227
                +    ++       + V+G   T  +    I  L    RN     I+  G+    
Sbjct: 147 ALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIMKL---KRNPEELEILGNGEQNKS 203

Query: 228 FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKYPEFNVPTEFEDVDEN 286
           ++++ D   A +F          + I S     +  +A+ + E   E  +   F     +
Sbjct: 204 YIYISDCVDAMLFGLRGDERVNIFNIGSEDQIKVKRIAEIVCE---ELGLSPRFRFTGGD 260

Query: 287 M------KNMLFSSKKLTDLGFKFKYSLDD 310
                    ML S +KL  LG+K +Y+ ++
Sbjct: 261 RGWKGDVPVMLLSIEKLKRLGWKPRYNSEE 290

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 89.7 bits (223), Expect = 7e-21
 Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 40/228 (17%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + VTGA+G +G  +  RL      +R     P           L  A  +    + DLA
Sbjct: 5   RLLVTGAAGQLGRVMRERLAPMAEILRLADLSP-----------LDPAGPNEECVQCDLA 53

Query: 67  EEGNFDEPIRGCTGVFHLA-TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
           +    +  + GC G+ HL    ++     P  ++++  I G+ ++  A +      R+VF
Sbjct: 54  DANAVNAMVAGCDGIVHLGGISVE----KPFEQILQGNIIGLYNLYEAARAHG-QPRIVF 108

Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
            SS  T+      + +  +                  Y VSK   E  A  + ++   + 
Sbjct: 109 ASSNHTIGYYPQTERLGPDVPARPDGL----------YGVSKCFGENLARMYFDKFGQET 158

Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSP----------ITRNEAHYPII 223
             +            +    L T  S                   P++
Sbjct: 159 ALVRIGSCTPE---PNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVV 203

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score = 87.8 bits (218), Expect = 1e-20
 Identities = 25/136 (18%), Positives = 46/136 (33%), Gaps = 15/136 (11%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + + GA+G  G   + + ++ GY V   VRD     ++              +   D+ 
Sbjct: 5   KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS---RLPSEGP-----RPAHVVVGDVL 56

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +  + D+ + G   V  L           +         G  +I+ A K    V ++V  
Sbjct: 57  QAADVDKTVAGQDAVIVLLGT------RNDLSPTTVMSEGARNIVAAMKAHG-VDKVVAC 109

Query: 127 SSAGTLDVEEHRKPVY 142
           +SA  L       P  
Sbjct: 110 TSAFLLWDPTKVPPRL 125

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score = 88.4 bits (220), Expect = 4e-20
 Identities = 50/280 (17%), Positives = 87/280 (31%), Gaps = 54/280 (19%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRA----TVRDPDNKKKVKHLLELPKASTHLTLWK 62
            + +TG +GFIG  L   L+  G  V       V      +     LE P     L L +
Sbjct: 9   RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKP----VLELEE 64

Query: 63  ADLAEEGNFDEPIRGCTGVFHLATPMD-FES-KDPENEVIRPTINGMVSIMRACKNAKTV 120
            D          +     V+HLA+      S K P + +    ++    ++  C +   V
Sbjct: 65  RD----------LSDVRLVYHLASHKSVPRSFKQPLDYLD--NVDSGRHLLALCTSVG-V 111

Query: 121 RRLVFTSSA---GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKF 177
            ++V  S+    G    +    P   E         RS       Y  SK   E  A   
Sbjct: 112 PKVVVGSTCEVYG--QADTL--PT-PED---SPLSPRSP------YAASKVGLEMVAGAH 157

Query: 178 AEENNIDFISII-PSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ------FVH 230
              +    + I+    V GP          + A   +        +  +G       F +
Sbjct: 158 QRASVAPEVGIVRFFNVYGPGERPDALVPRLCAN--LLTRN---ELPVEGDGEQRRDFTY 212

Query: 231 LDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLRE 269
           + D+    + L   P         S    ++ ++ + L+ 
Sbjct: 213 ITDVVDKLVALANRP-LPSVVNFGSGQSLSVNDVIRILQA 251

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 87.7 bits (218), Expect = 9e-20
 Identities = 67/339 (19%), Positives = 122/339 (35%), Gaps = 64/339 (18%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVR-----ATVRDPDNKKKVKHLLELPKASTHLTLW 61
              +TG +GFIGS L+  LL+    V      AT     N  +V+ L+   + S +    
Sbjct: 29  VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQR-NLDEVRSLVSEKQWS-NFKFI 86

Query: 62  KADLAEEGNFDEPIRGCTGVFHLATPMD-FES-KDPENEVIRPTINGMVSIMRACKNAKT 119
           + D+    + +    G   V H A       S  DP        I+G ++++ A ++AK 
Sbjct: 87  QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPI-TSNATNIDGFLNMLIAARDAK- 144

Query: 120 VRRLVFTSSA---GTLD----VEEHR-KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAE 171
           V+   + +S+   G       VE+   KP+                     Y V+K + E
Sbjct: 145 VQSFTYAASSSTYGDHPGLPKVEDTIGKPLS-------------------PYAVTKYVNE 185

Query: 172 QAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL--SPITRNEAHYPIIKQGQ-- 227
             A  F+       I +    V G     +   + +     S + + +    +   G   
Sbjct: 186 LYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGD---DVYINGDGE 242

Query: 228 ----FVHLDDLCSAHIF-LFEHPNAKGR-Y-ICSSHPATILELAKFLREKYPEFNVPTEF 280
               F ++++   A++       +A+ + Y I      ++ +L   LR+   E  V    
Sbjct: 243 TSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHR 302

Query: 281 E---------DVDENMKNMLFSSKKLTDLGFKFKYSLDD 310
           E         DV  ++ +    SK    LG+  KY +  
Sbjct: 303 EPVYRDFREGDVRHSLAD---ISKAAKLLGYAPKYDVSA 338

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 85.1 bits (211), Expect = 1e-19
 Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + + G++G +G  L+  L    Y + A  R  +   +V     +      +     ++A+
Sbjct: 3   IFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE---QVPQYNNVKAVHFDVDWTPEEMAK 59

Query: 68  EGNFDEPIRGCTGVFHLA--TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
           +      + G   + +++          D           G V +M+A + A+ V+R + 
Sbjct: 60  Q------LHGMDAIINVSGSGGKSLLKVDLY---------GAVKLMQAAEKAE-VKRFIL 103

Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWK 176
            S+  +L  E+     +D                   Y+++K  A+    K
Sbjct: 104 LSTIFSLQPEKWIGAGFDAL---------------KDYYIAKHFADLYLTK 139

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score = 87.3 bits (217), Expect = 1e-19
 Identities = 71/322 (22%), Positives = 110/322 (34%), Gaps = 56/322 (17%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK--KVKHLLELPKASTHLTLWKAD 64
            V +TG  G IGS +   LLERG  V       DN    + +HL + P      T  +  
Sbjct: 23  KVFITGICGQIGSHIAELLLERGDKVVGI----DNFATGRREHLKDHPNL----TFVEGS 74

Query: 65  LAEEGNFDEPIRGC--TGVFHLA----TPMDFESKDPENEVIRPTINGMVSIMRACKNAK 118
           +A+    ++ I       V H A     P D+ +    N        G  ++++A K   
Sbjct: 75  IADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTN------CVGGSNVVQAAKKNN 128

Query: 119 TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFA 178
            V R V+  +A    V+  ++PV         +   S       Y +SK+  E     + 
Sbjct: 129 -VGRFVYFQTALCYGVKPIQQPV-RLD--HPRNPANSS------YAISKSANED----YL 174

Query: 179 EENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ---FVHLDDLC 235
           E + +DF++   + VVGP   S   P     LS                   FV + DL 
Sbjct: 175 EYSGLDFVTFRLANVVGPRNVSGPLPIFFQRLS------EGKKCFVTKARRDFVFVKDLA 228

Query: 236 SAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKY-PEFNVPTEFE-----DVDENMK 288
            A +   +     G Y   S     I EL   + E          E       D    + 
Sbjct: 229 RATVRAVDGV-GHGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGPDDAPSILL 287

Query: 289 NMLFSSKKLTDLGFKFKYSLDD 310
           +    S+ + D G      L +
Sbjct: 288 D---PSRTIQDFGKIEFTPLKE 306

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 62/332 (18%), Positives = 113/332 (34%), Gaps = 48/332 (14%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKASTHLTLW 61
            V V G +GF+GS L+ RLLE G      V   DN     K  V            +   
Sbjct: 34  NVMVVGGAGFVGSNLVKRLLELGV---NQVHVVDNLLSAEKINVPD-------HPAVRFS 83

Query: 62  KADLAEEGNFDEPIRGCTGVFHLATPMD-FES-KDPENEVIRPTINGMVSIMRACKNAKT 119
           +  + ++            VFHLAT      S  DP            + +    K+ K 
Sbjct: 84  ETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPL-ADHENNTLTTLKLYERLKHFKR 142

Query: 120 VRRLVFTSSAGTL-DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFA 178
           ++++V++++  ++ +         +ET    L    S       Y +SK   E  +  + 
Sbjct: 143 LKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSP------YSMSKIFGEFYSVYYH 196

Query: 179 EENNIDFISIIPSLVVGPFLTSSMPPSLITALSP--------ITRNEAHYPIIKQG---Q 227
           +++ +  +      V GP           T  +         I +     P+  +     
Sbjct: 197 KQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVA 256

Query: 228 ---FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLRE-----KYPEFNVPT 278
              F+ ++D+ +  I         G Y I S    +I +LA  + E        +     
Sbjct: 257 TRDFIFVEDVANGLIACAADGTPGGVYNIASGKETSIADLATKINEITGNNTELDRLPKR 316

Query: 279 EFEDVDENMKNMLFSSKKLTDLGFKFKYSLDD 310
            +++  +   +     K   +LGF    S+DD
Sbjct: 317 PWDNSGKRFGSP---EKARRELGFSADVSIDD 345

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 67/348 (19%), Positives = 122/348 (35%), Gaps = 64/348 (18%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V + G +GFIG  L  R+LE                ++  L++       +  ++ D+ 
Sbjct: 26  KVLILGVNGFIGHHLSKRILETTDWE--VFGMDMQTDRLGDLVKHE----RMHFFEGDIT 79

Query: 67  EEGNFDEP-IRGCTGVFHLA---TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               + E  ++ C  +  L    TP  +  K P   V        + I+R+       + 
Sbjct: 80  INKEWVEYHVKKCDVILPLVAIATPATYV-KQPL-RVFELDFEANLPIVRSAVKYG--KH 135

Query: 123 LVFTSSA----GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFA 178
           LVF S++       D +    P     ++  ++  R      W+Y  SK L ++  W + 
Sbjct: 136 LVFPSTSEVYGMCADEQFD--PDASALTYGPINKPR------WIYACSKQLMDRVIWGYG 187

Query: 179 EENNIDFISIIPSLVVGPFLTSSMPPS----------LITALS--PITRNEAHYPIIKQG 226
            E  ++F    P   +GP L S   P           L   +    I+       ++  G
Sbjct: 188 ME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENIS-------LVDGG 239

Query: 227 Q----FVHLDDLCSAHIFLFEHPN--AKGRYICSSHPA---TILELAKFLREKYPEFNVP 277
                F ++DD  SA + + E+ N  A G+     +P    ++ ELA  + E        
Sbjct: 240 SQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLEL---AAEF 296

Query: 278 TEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLL 325
            E+ D  + +K +  +S      G+       D+             L
Sbjct: 297 PEYADSAKRVKLVETTSGAYYGNGY------QDVQNRVPKIENTMQEL 338

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 62/342 (18%), Positives = 119/342 (34%), Gaps = 70/342 (20%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVR-----ATVRDPDNKKKVKHLLELPKASTHLTLW 61
           T  +TG +GFIGS L+ +LL+    V      +T     N  +VK L+   + S      
Sbjct: 27  TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQY-NLDEVKTLVSTEQWS-RFCFI 84

Query: 62  KADLAEEGNFDEPIRGCTGVFHLA----TPMDFES-KDPENEVIRPTINGMVSIMRACKN 116
           + D+ +    ++ ++G   V H A     P    S  DP        I G ++I+ A KN
Sbjct: 85  EGDIRDLTTCEQVMKGVDHVLHQAALGSVP---RSIVDPI-TTNATNITGFLNILHAAKN 140

Query: 117 AKTVRRLVFTSSA------GTLDVEEHR--KPVYDETSWSDLDFVRSVKMTGWMYFVSKT 168
           A+ V+   + +S+        L   E     P+                     Y V+K 
Sbjct: 141 AQ-VQSFTYAASSSTYGDHPALPKVEENIGNPLS-------------------PYAVTKY 180

Query: 169 LAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL--SPITRNEAHYPIIKQG 226
           + E  A  +A       I +    V G     +   + +     + + + +    +   G
Sbjct: 181 VNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGD---DVYING 237

Query: 227 Q------FVHLDDLCSAHIF-LFEHPNAKGR-Y-ICSSHPATILELAKFLREKYPEFNVP 277
                  F ++D++   +I       +AK   Y +      T+ EL+ ++ +   E N+ 
Sbjct: 238 DGETSRDFCYIDNVIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYD---ELNLI 294

Query: 278 TEFEDVDENMKNM--------LFSSKKL-TDLGFKFKYSLDD 310
              + +    +               K    L ++    + +
Sbjct: 295 HHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNIKIRE 336

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score = 83.2 bits (206), Expect = 3e-18
 Identities = 67/346 (19%), Positives = 113/346 (32%), Gaps = 61/346 (17%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V + G +GFIG+ L  RLL   +       D      +   L  P    H    + D++ 
Sbjct: 3   VLILGVNGFIGNHLTERLLREDHY-EVYGLD-IGSDAISRFLNHP----HFHFVEGDISI 56

Query: 68  EGNFDEPIRG-CTGVFHLA---TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
              + E     C  V  L    TP+++  ++P   V        + I+R C   +   R+
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYT-RNPL-RVFELDFEENLRIIRYCVKYRK--RI 112

Query: 124 VFTSSA---GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           +F S++   G     +       E   + +  V  V    W+Y VSK L ++  W + E+
Sbjct: 113 IFPSTSEVYG--MCSDKYFD---EDHSNLI--VGPVNKPRWIYSVSKQLLDRVIWAYGEK 165

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPS----------LITALS--PITRNEAHYPIIKQGQ- 227
             + F    P   +GP L +               ++  +   PI        +I  G+ 
Sbjct: 166 EGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIK-------LIDGGKQ 218

Query: 228 ---FVHLDDLCSAHIFLFEHPN--AKGRYICSSHPA---TILELAKFLREKYPEFNVPTE 279
              F  + D   A   + E+      G  I   +P    +I EL + L      F     
Sbjct: 219 KRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLAS---FEKHPL 275

Query: 280 FEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLL 325
                      +  S      G+       D+         A   L
Sbjct: 276 RHHFPPFAGFRVVESSSYYGKGY------QDVEHRKPSIRNAHRCL 315

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 50/282 (17%), Positives = 93/282 (32%), Gaps = 45/282 (15%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK--VKHLLELPKASTHLTLWKADL 65
           + +TGA GFI S +  RL   G+ V A+    D KK   +   +   +          DL
Sbjct: 32  ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTEDMFCDE------FHLVDL 81

Query: 66  AEEGNFDEPIRGCTGVFHLATPM---DFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
               N  +   G   VF+LA  M    F   +    ++        +++ A +    ++R
Sbjct: 82  RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHS-VIMYNNTMISFNMIEAARING-IKR 139

Query: 123 LVFTSSA---GTLDVEEHRKPVYDETSWSDLD--FVRSVKMTGWMYFVSKTLAEQAAWKF 177
             + SSA         E           SD      +        + + K   E+    +
Sbjct: 140 FFYASSACIYPEFKQLETTNV---SLKESDAWPAEPQDA------FGLEKLATEELCKHY 190

Query: 178 AEENNIDFISIIPSLVVGPFLT-----SSMPPSLIT-ALSPITRNEAHYPIIKQGQ---- 227
            ++  I+        + GPF T        P +    A      +   + +   G     
Sbjct: 191 NKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQ----TSTDRFEMWGDGLQTRS 246

Query: 228 FVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLRE 269
           F  +D+     + L +    +   I S    ++ E+A+ +  
Sbjct: 247 FTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLS 288

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score = 82.2 bits (204), Expect = 5e-18
 Identities = 66/331 (19%), Positives = 114/331 (34%), Gaps = 64/331 (19%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKASTHLTLWK 62
           + VTG +GFIGS L+ +L+E GY V       DN     ++ V      P A     L  
Sbjct: 3   IVVTGGAGFIGSHLVDKLVELGYEVVVV----DNLSSGRREFVN-----PSA----ELHV 49

Query: 63  ADLAEEGNFDEPIRGCTGVFHLATPMD-FES-KDPENEVIRPTINGMVSIMRACKNAKTV 120
            DL +             VFH A   +   S  +P        +    +++   +    V
Sbjct: 50  RDLKDYSWGAGI--KGDVVFHFAANPEVRLSTTEPI-VHFNENVVATFNVLEWARQTG-V 105

Query: 121 RRLVFTSSAGTL-DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
           R +VF SS+    D +    P   E    +     SV      Y  +K   E     +A 
Sbjct: 106 RTVVFASSSTVYGDADVIPTP---EE---EPYKPISV------YGAAKAAGEVMCATYAR 153

Query: 180 ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ----FVHLDDLC 235
              +  +++  + VVGP L   +    I  L    RN     ++  G     ++++ D  
Sbjct: 154 LFGVRCLAVRYANVVGPRLRHGVIYDFIMKL---RRNPNVLEVLGDGTQRKSYLYVRDAV 210

Query: 236 SAHIFLFEHPNAKGRY-----ICSSHPATILELAKFLREKY-----PEFNVPTEFE---- 281
            A +  ++             + +     +L++A+ + E             T       
Sbjct: 211 EATLAAWKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWP 270

Query: 282 -DVDENMKNMLFSSKKL-TDLGFKFKYSLDD 310
            DV    K M  +  KL    G++   +  +
Sbjct: 271 GDV----KYMTLAVTKLMKLTGWRPTMTSAE 297

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 82.9 bits (204), Expect = 6e-18
 Identities = 49/377 (12%), Positives = 100/377 (26%), Gaps = 72/377 (19%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYA-----VRATVRDPDNKKKVKHLLELPKASTHLTLW 61
              + G +G IG+ L   L           V    R                    +   
Sbjct: 3   VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTR---------PAWHEDNPINYV 53

Query: 62  KADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRAC-KNAKTV 120
           + D+++  +    +   T V H+     + ++  E E          +++ A   N   +
Sbjct: 54  QCDISDPDDSQAKLSPLTDVTHVFYVT-WANRSTEQENCEANSKMFRNVLDAVIPNCPNL 112

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
           + +   +              Y +    D  +   +    +M F    L +    +  ++
Sbjct: 113 KHISLQTGRK---HYMGPFESYGKIESHDPPYTEDLPRLKYMNF-YYDLEDIMLEEVEKK 168

Query: 181 NNIDFISIIPSLVVGPFLTSSM----PPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
             + +    P  + G    S M       +  A+         +   K   +    D   
Sbjct: 169 EGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCK-AAWDGYSDCSD 227

Query: 237 A------HIFLFEHPNAKGRY--ICSSHPATIL----ELAKFLREKYPEFNVPTE----- 279
           A      HI+    P AK     + +            LA+    +  E+    +     
Sbjct: 228 ADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQD 287

Query: 280 ------------------------------FEDVDENMKNMLFSSKKLTDLGFKFKYSLD 309
                                         F DV    +  L S  K  + GF    +  
Sbjct: 288 LMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSK 347

Query: 310 DMFTGAVDTCRAKGLLP 326
           + F   +D  +A  ++P
Sbjct: 348 NAFISWIDKAKAYKIVP 364

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score = 82.7 bits (204), Expect = 7e-18
 Identities = 42/311 (13%), Positives = 89/311 (28%), Gaps = 63/311 (20%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + +TGA GF+G  L   L          + +   + K + L                   
Sbjct: 3   IVITGAKGFVGKNLKADLTSTTDHH---IFEVHRQTKEEELESA---------------- 43

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
                  +     + HLA       +  + E     ++ +  ++           ++ +S
Sbjct: 44  -------LLKADFIVHLAGVN--RPEHDK-EFSLGNVSYLDHVLDILTRNTKKPAILLSS 93

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFIS 187
           S               + +                Y  SK   EQ   ++AEE       
Sbjct: 94  SI-----------QATQDN---------------PYGESKLQGEQLLREYAEEYGNTVYI 127

Query: 188 IIPSLVVGPFLTSSMPPSLITALSPITRNEA--HYPIIKQGQFVHLDDLCSAHIFLFEHP 245
                + G +   +    + T    I RNE         +    ++DD+ +      E  
Sbjct: 128 YRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGT 187

Query: 246 NAKGRYIC---SSHPATILELAKFLRE---KYPEFNVPTEFEDVDENMKNMLFSSKKLTD 299
                 +    +    T+ E+   L +      +  +P      ++++ +   S    TD
Sbjct: 188 PTIENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYSTYLSYLPSTD 247

Query: 300 LGFKFKYSLDD 310
             +    ++DD
Sbjct: 248 FSYPLLMNVDD 258

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score = 81.2 bits (201), Expect = 1e-17
 Identities = 49/330 (14%), Positives = 115/330 (34%), Gaps = 45/330 (13%)

Query: 8   VCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           + + GA G IG+ L  +L +  G      V   D +K    ++              +  
Sbjct: 5   ILIIGACGQIGTELTQKLRKLYGTEN---VIASDIRKLNTDVVN------SGPFEVVNAL 55

Query: 67  EEGNFDEPIR--GCTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
           +    +  +     T ++ +A  +     K+P        +N +  ++   K  K ++++
Sbjct: 56  DFNQIEHLVEVHKITDIYLMAALLSATAEKNPA-FAWDLNMNSLFHVLNLAKAKK-IKKI 113

Query: 124 VFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
            + SS         ++     T    +    +      +Y +SK   E+    +     +
Sbjct: 114 FWPSSIAVFGPTTPKENTPQYT----IMEPST------VYGISKQAGERWCEYYHNIYGV 163

Query: 184 DFISIIPSLVVGPFL-----TSSMPPSLITALSPITRNEAHYPIIKQGQ----FVHLDDL 234
           D  SI    ++         T+     +         ++  Y      +     +++DD 
Sbjct: 164 DVRSIRYPGLISWSTPPGGGTTDYAVDIFYK---AIADK-KYECFLSSETKMPMMYMDDA 219

Query: 235 CSAHIFLFEHPNAKGR----YICSSHPATILELAKFLREKYPEFNV---PTEFEDVDENM 287
             A I + + P  K +    Y  ++   T  E+A  +++  PEF +   P   + + ++ 
Sbjct: 220 IDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSW 279

Query: 288 KNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
              +  S+   D  +K  + L+ M    ++
Sbjct: 280 PASIDDSQAREDWDWKHTFDLESMTKDMIE 309

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 79.0 bits (195), Expect = 5e-17
 Identities = 43/309 (13%), Positives = 91/309 (29%), Gaps = 59/309 (19%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + + G  G +G  L  RL  +G+ V    R                    +    AD+ 
Sbjct: 5   KILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQ------------PMPAGVQTLIADVT 51

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
                   +     +          S +         + G+ + + A + A  ++ + F 
Sbjct: 52  RPDTLASIVHLRPEILVYCVAASEYSDEH---YRLSYVEGLRNTLSALEGAP-LQHVFFV 107

Query: 127 SSAGTLDV-EEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
           SS G   V  +  +   DE +          +M           AE     ++       
Sbjct: 108 SSTG---VYGQEVEEWLDEDTPPIAKDFSGKRM---------LEAEALLAAYS------- 148

Query: 186 ISII-PSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ---FVHLDDLCSAHIFL 241
            +I+  S + GP             L  I + +       +      +H DD  +   +L
Sbjct: 149 STILRFSGIYGP-----------GRLRMIRQAQTPEQWPARNAWTNRIHRDDGAAFIAYL 197

Query: 242 FEHPNAKGRY----ICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKL 297
            +  +         +  + P  + +L ++L ++     +            N   S+ +L
Sbjct: 198 IQQRSHAVPERLYIVTDNQPLPVHDLLRWLADR---QGIAYPAGATPPVQGNKKLSNARL 254

Query: 298 TDLGFKFKY 306
              G++  Y
Sbjct: 255 LASGYQLIY 263

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 79.7 bits (197), Expect = 5e-17
 Identities = 61/342 (17%), Positives = 112/342 (32%), Gaps = 54/342 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDP---DNKKKVKHLLELPKASTHLTLWKA 63
            + + GA+G +G  L  RL++ G      V      D  +                   A
Sbjct: 16  HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAV----DARAA 71

Query: 64  DLAEEGNFDEPIR-GCTGVFHLATPMDFES-KDPE-----NEVIRPTINGMVSIMRACKN 116
           DL+  G  ++ +      +FHLA  +  E+  D +     N      ++G   +  A + 
Sbjct: 72  DLSAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRIN------LDGTRYLFDAIRI 125

Query: 117 A----KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQ 172
           A        R+VFTSS           P+ DE                  Y   K + E 
Sbjct: 126 ANGKDGYKPRVVFTSSIAVFG-APLPYPIPDEF----------HTTPLTSYGTQKAICEL 174

Query: 173 AAWKFAEENNIDFISI-IPSLVVGPFL----TSSMPPSLITALSPITRNEAHYPIIKQGQ 227
               ++     D I I +P++ + P       S    +++    P+   EA  P+ +  +
Sbjct: 175 LLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILRE--PLVGQEAVLPVPESIR 232

Query: 228 F------VHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFE 281
                    +  L    +   E    +         AT+ E  + LR+   E  V     
Sbjct: 233 HWHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRR 292

Query: 282 DVDENMKNMLFSSKKLTD------LGFKFKYSLDDMFTGAVD 317
           + +E +  M        +      LGF  + S +++    ++
Sbjct: 293 EPNEMIMRMCEGWAPGFEAKRARELGFTAESSFEEIIQVHIE 334

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 77.4 bits (191), Expect = 8e-17
 Identities = 29/166 (17%), Positives = 56/166 (33%), Gaps = 32/166 (19%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V V GA+G +  +L+  L  +G+   A VR+ +   +++             +  A+L E
Sbjct: 24  VLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD-------IVVANLEE 76

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
           +  F         V   A        D    +      G +  ++  +    ++R +  S
Sbjct: 77  D--FSHAFASIDAVVFAAGSGPHTGADKTILIDL---WGAIKTIQEAEKRG-IKRFIMVS 130

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQA 173
           S GT            +     ++           Y V+K LA+  
Sbjct: 131 SVGT-----------VDPDQGPMNMRH--------YLVAKRLADDE 157

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 75.1 bits (184), Expect = 5e-16
 Identities = 34/245 (13%), Positives = 65/245 (26%), Gaps = 37/245 (15%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + V GA+G  GS ++     RG+ V A VRDP          +   A+            
Sbjct: 3   IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ------KAADRLGATVAT----LVKEP 52

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
               +  +     V    +      +   +      ++    ++   +N+     +    
Sbjct: 53  LVLTEADLDSVDAVVDALSVPWGSGRGYLH------LDFATHLVSLLRNSD-TLAVFILG 105

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFIS 187
           SA           + D    +              ++                 N+++I 
Sbjct: 106 SASLAMPGADHPMILDFPESAASQ----------PWYDGALYQYYEYQFLQMNANVNWIG 155

Query: 188 IIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA 247
           I PS        +S      T L                  +   ++  A +   EHP A
Sbjct: 156 ISPSEAFPSGPATSYVAGKDTLLVGEDG----------QSHITTGNMALAILDQLEHPTA 205

Query: 248 KGRYI 252
               I
Sbjct: 206 IRDRI 210

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 75.2 bits (185), Expect = 5e-16
 Identities = 39/262 (14%), Positives = 73/262 (27%), Gaps = 49/262 (18%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
           +V + GASG  G  L+  +LE+G    V    R      +  +         ++     D
Sbjct: 20  SVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAY--------KNVNQEVVD 71

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
             +  ++    +G    F        ++       +    + ++      K     +   
Sbjct: 72  FEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRV--DRDYVLKSAELAKAGG-CKHFN 128

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
             SS G            D++S               +Y   K   E       EE   D
Sbjct: 129 LLSSKGA-----------DKSSNF-------------LYLQVKGEVEAK----VEELKFD 160

Query: 185 FISII-PSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFE 243
             S+  P +++     S     L+                  G  V +  +  A +    
Sbjct: 161 RYSVFRPGVLLCDRQESRPGEWLVRKFFGSLP-----DSWASGHSVPVVTVVRAMLNNVV 215

Query: 244 HPNAKGRYICSSHPATILELAK 265
            P  K   +  +    I +L K
Sbjct: 216 RPRDKQMELLEN--KAIHDLGK 235

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 51/337 (15%), Positives = 105/337 (31%), Gaps = 73/337 (21%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + VTG +GFIGS ++  L ++G      +   DN K     + L   +    + K D  
Sbjct: 48  MIIVTGGAGFIGSNIVKALNDKGI---TDILVVDNLKDGTKFVNLVDLNIADYMDKEDFL 104

Query: 67  EEGNFDEPIRGCTGVFHLA----TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
            +    E       +FH      T         +N            ++  C   +    
Sbjct: 105 IQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNY-----QYSKELLHYCLEREI--P 157

Query: 123 LVFTSSAGT-------LDVEEHR-KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAA 174
            ++ SSA T               KP+                    ++  SK L ++  
Sbjct: 158 FLYASSAATYGGRTSDFIESREYEKPLN-------------------VFGYSKFLFDEYV 198

Query: 175 WKFAEENNIDFISIIPSLVVGPF-----LTSSMPPSLITALSPITRNEAHYPIIKQG--- 226
            +   E N   +      V GP        +S+   L T    +   E+  P + +G   
Sbjct: 199 RQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQ---LNNGES--PKLFEGSEN 253

Query: 227 Q---FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKYPEFNV-----P 277
               FV++ D+   +++  E+    G + + +    +   +A      + +  +     P
Sbjct: 254 FKRDFVYVGDVADVNLWFLENG-VSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFP 312

Query: 278 TEFEDVDENMKNMLFS----SKKLTDLGFKFKYSLDD 310
            + +   +      F+    +        K   ++ +
Sbjct: 313 DKLKGRYQA-----FTQADLTNLRAAGYDKPFKTVAE 344

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 54/334 (16%), Positives = 111/334 (33%), Gaps = 69/334 (20%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           + VTG +GFIGS ++  L ++G   +       DN K     + L   +    + K D  
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVV----DNLKDGTKFVNLVDLNIADYMDKEDFL 57

Query: 67  EEGNFDEPIRGCTGVFHLA----TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
            +    E       +FH      T         +N            ++  C   +    
Sbjct: 58  IQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNY-----QYSKELLHYCLEREI--P 110

Query: 123 LVFTSSAGT--------LDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAA 174
            ++ SSA T        ++  E+ KP+                    +Y  SK L ++  
Sbjct: 111 FLYASSAATYGGRTSDFIESREYEKPLN-------------------VYGYSKFLFDEYV 151

Query: 175 WKFAEENNIDFISIIPSLVVGPF-----LTSSMPPSLITALSPITRNEAHYPIIKQG--- 226
            +   E N   +      V GP        +S+   L T    +   E+  P + +G   
Sbjct: 152 RQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQ---LNNGES--PKLFEGSEN 206

Query: 227 Q---FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKYPEFNVPTEFED 282
               FV++ D+   +++  E+  + G + + +    +   +A      + +  +  E+  
Sbjct: 207 FKRDFVYVGDVADVNLWFLENGVS-GIFNLGTGRAESFQAVADATLAYHKKGQI--EYIP 263

Query: 283 VDENMKNM--LFS----SKKLTDLGFKFKYSLDD 310
             + +K     F+    +        K   ++ +
Sbjct: 264 FPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAE 297

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352

 Score = 75.6 bits (186), Expect = 1e-15
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 17/128 (13%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           M    +T+ V GA+G  G+ LI      G+ VRA V         + L  +P      TL
Sbjct: 1   MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK-GLIAEELQAIPNV----TL 55

Query: 61  WKADLA-EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT 119
           ++  L       D    G    F   T          +E+     +    +  A K A T
Sbjct: 56  FQGPLLNNVPLMDTLFEGAHLAFINTTS------QAGDEI-AIGKD----LADAAKRAGT 104

Query: 120 VRRLVFTS 127
           ++  +++S
Sbjct: 105 IQHYIYSS 112

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 73.4 bits (180), Expect = 3e-15
 Identities = 43/279 (15%), Positives = 77/279 (27%), Gaps = 59/279 (21%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKA 63
            TV VTGASG  G  +  +L E    +  +  VR    K+K+    +         ++  
Sbjct: 5   PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEAD---------VFIG 55

Query: 64  DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTIN--------------GMVS 109
           D+ +  + +   +G   +  L + +       +                       G  +
Sbjct: 56  DITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKN 115

Query: 110 IMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTL 169
            + A K A  V+ +V   S G                   L+     K+      V K  
Sbjct: 116 QIDAAKVAG-VKHIVVVGSMGG------------TNPDHPLN-----KLGNGNILVWKRK 157

Query: 170 AEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV 229
           AEQ       ++   +  I    ++                   T            + V
Sbjct: 158 AEQY----LADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDT----------KTV 203

Query: 230 HLDDLCSAHIFLFEHPNAKGR-Y-ICSSHPATILELAKF 266
              D+    I       AK + + + S    T      F
Sbjct: 204 PRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDF 242

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404

 Score = 74.8 bits (184), Expect = 4e-15
 Identities = 52/370 (14%), Positives = 101/370 (27%), Gaps = 73/370 (19%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRA----TVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
           V G  G+ G    + L ++ Y V        R  D++  ++ L  +      ++ WKA  
Sbjct: 16  VIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT 75

Query: 66  AEEGNF----------------DEPIRGCTGVFHLATPMDFES------KDPEN--EVIR 101
            +                             V H       +        D         
Sbjct: 76  GKSIELYVGDICDFEFLAESFKSFEPD---SVVHFGE----QRSAPYSMIDRSRAVYTQH 128

Query: 102 PTINGMVSIMRACKNAKTVRRLVFTSSAGT-----LDVEEHRKPVYDETSWSDLDFVRSV 156
             + G ++++ A K       LV   + G      +D+EE    +        L + +  
Sbjct: 129 NNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPK-- 186

Query: 157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGP-FLTSSMPPSLITALSPITR 215
                 Y +SK           +   I    +   +V G     + M   L   L     
Sbjct: 187 -QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV 245

Query: 216 NEAH-YPIIKQ---GQ-------------FVHLDDLCSAHIFLFEHPNAKGRYIC---SS 255
                     Q   G              ++ + D          +P   G +      +
Sbjct: 246 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFT 305

Query: 256 HPATILELAKFLREKYPEFNVPTEFEDV-------DENMKNMLFSSKKLTDLGFKFKYSL 308
              ++ ELA  + +   +  +  +   V       +E+  N      KL +LG +  Y  
Sbjct: 306 EQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNA--KHTKLMELGLEPHYLS 363

Query: 309 DDMFTGAVDT 318
           D +    ++ 
Sbjct: 364 DSLLDSLLNF 373

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 70.6 bits (173), Expect = 2e-14
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 23/128 (17%)

Query: 7   TVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
            V + GA G I   +I +L ++         R P    K+          T+  +   D+
Sbjct: 25  NVLILGAGGQIARHVINQLADKQTIKQTLFARQPA---KIHKPYP-----TNSQIIMGDV 76

Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
                  + ++G   V+   T  D +                 S++ A K    V+RL+F
Sbjct: 77  LNHAALKQAMQGQDIVYANLTGEDLDI-------------QANSVIAAMKACD-VKRLIF 122

Query: 126 TSSAGTLD 133
             S G  D
Sbjct: 123 VLSLGIYD 130

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 71.5 bits (175), Expect = 6e-14
 Identities = 38/217 (17%), Positives = 73/217 (33%), Gaps = 34/217 (15%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERG------YA-VRATVRDPDNKKKVKHLL--------- 49
            TV +TGA+GF+G +L++ LL R          VRA   D D +++++            
Sbjct: 74  RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE-SDEDARRRLEKTFDSGDPELLR 132

Query: 50  -ELPKASTHLTLWKADLAEEG------NFDEPIRGCTGVFHLATPMDFESKDPENEVIRP 102
                A+  L +   D +E         +         +   A  ++     P +E+  P
Sbjct: 133 HFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA---FPYHELFGP 189

Query: 103 TINGMVSIMRACKNAKTVRRLVFTSSAGTLDV--EEHRKPVYDETSWSDLDFVRSVKMTG 160
            + G   ++R     K  +   + S+A               D    S    V      G
Sbjct: 190 NVAGTAELIRIALTTKL-KPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTVDGGWAGG 248

Query: 161 WMYFVSKTLAEQAAWKFAEENNIDFISII-PSLVVGP 196
             Y  SK   E    +  +   +  +++    +++  
Sbjct: 249 --YGTSKWAGEVLLREANDLCALP-VAVFRCGMILAD 282

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 71/304 (23%), Positives = 114/304 (37%), Gaps = 52/304 (17%)

Query: 5   AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKA 63
              V + G +GFIG+ L  RLL    Y V       D    +   L  P         + 
Sbjct: 315 RTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA---ISRFLNHPHFHFV----EG 367

Query: 64  DLAEEGNFDE-PIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT 119
           D++    + E  ++ C  V  L   ATP+++ +++P   V        + I+R C   K 
Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNPL-RVFELDFEENLRIIRYC--VKY 423

Query: 120 VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG------WMYFVSKTLAEQA 173
            +R++F S++           VY   S    D   S  + G      W+Y VSK L ++ 
Sbjct: 424 RKRIIFPSTS----------EVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRV 473

Query: 174 AWKFAEENNIDFISIIPSLVVGPFLTSSMPPS-----LITALS-PITRNEAHYPI--IKQ 225
            W + E+  + F    P   +GP L +           IT L   +       PI  I  
Sbjct: 474 IWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGS---PIKLIDG 530

Query: 226 GQ----FVHLDDLCSAHIFLFEHPN--AKGRYICSSHP---ATILELAKFLREKYPEFNV 276
           G+    F  + D   A   + E+      G  I   +P   A+I EL + L   + +  +
Sbjct: 531 GKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPL 590

Query: 277 PTEF 280
              F
Sbjct: 591 RHHF 594

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 68/355 (19%), Positives = 116/355 (32%), Gaps = 95/355 (26%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKASTHLTLW 61
            V VTG +GFIGS ++  LL RG  V       DN     ++ V               +
Sbjct: 2   RVLVTGGAGFIGSHIVEDLLARGLEVAVL----DNLATGKRENVP-----KGV----PFF 48

Query: 62  KADLAEEGNFDEPIRGC--TGVFHLATPMD-FES-KDP-----ENEVIRPTINGMVSIMR 112
           + DL ++   +   R    T V H A       S +DP      N      + G ++++ 
Sbjct: 49  RVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVN------LLGGLNLLE 102

Query: 113 ACKNAKTVRRLVFTSSAGTL--DVEEHRKPVYDETSWSDLDFVRSVKMTGWM-------Y 163
           AC+    V +LVF S+ G +  +V E  +   +ET                        Y
Sbjct: 103 ACRQYG-VEKLVFASTGGAIYGEVPE-GERA-EET----------------WPPRPKSPY 143

Query: 164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPI-----TRNEA 218
             SK   E     + +   + ++S+    V GP       P     +  I      +   
Sbjct: 144 AASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGP----RQDPHGEAGVVAIFAERVLKGLP 199

Query: 219 HYPIIKQGQ----------FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFL 267
               +   +          +V++ D+  AH          G Y + +    T  E+   +
Sbjct: 200 --VTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSLE--GIYNVGTGEGHTTREVLMAV 255

Query: 268 REKYPEFNVPTEFE-----DVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
            E         +       D+    +  + S  KL   G++ K    +     VD
Sbjct: 256 AEAA-GKAPEVQPAPPRPGDL----ERSVLSPLKLMAHGWRPKVGFQEGIRLTVD 305

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299

 Score = 67.4 bits (165), Expect = 6e-13
 Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 15/137 (10%)

Query: 7   TVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
            V V G +G  G  +   LLE G + VR   R+P  KK  K L           + + D 
Sbjct: 7   LVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-KKAAKEL-----RLQGAEVVQGDQ 60

Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
            ++   +  + G    F +    +  S++ E   ++        +    +    +  +V+
Sbjct: 61  DDQVIMELALNGAYATFIVTNYWESCSQEQE---VKQGKL----LADLARRL-GLHYVVY 112

Query: 126 TSSAGTLDVEEHRKPVY 142
           +       +   R    
Sbjct: 113 SGLENIKKLTAGRLAAA 129

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 63.5 bits (154), Expect = 5e-12
 Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 34/168 (20%)

Query: 7   TVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
            + + GA+G I   L   LL      +    R    +   + +         +T+ +   
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII-----DHERVTVIEGSF 61

Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
              G  ++ +     VF  A                   + M SI++A  +   +RR++ 
Sbjct: 62  QNPGXLEQAVTNAEVVFVGAMESG---------------SDMASIVKAL-SRXNIRRVIG 105

Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQA 173
            S AG          +  E   +   +          Y   +  A   
Sbjct: 106 VSMAG----------LSGEFPVALEKWTF--DNLPISYVQGERQARNV 141

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 64.1 bits (156), Expect = 7e-12
 Identities = 46/312 (14%), Positives = 92/312 (29%), Gaps = 60/312 (19%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           T+   G  G+    L   L  +G+ +  T R+PD  +       +  +     LW  +  
Sbjct: 7   TLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQME------AIRASGAEPLLWPGEEP 59

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
                   + G T +     P      D   +   P +  +   + A   A   R + + 
Sbjct: 60  S-------LDGVTHLLISTAP------DSGGD---PVLAALGDQIAA--RAAQFRWVGYL 101

Query: 127 SSAGTLDV-EEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
           S+     V  +H     DET+       R              +  +  W+      +  
Sbjct: 102 STTA---VYGDHDGAWVDETTPLTPTAARGRWR----------VMAEQQWQAVPNLPLHV 148

Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP 245
             +  + + GP         L                      +H++D+          P
Sbjct: 149 FRL--AGIYGP--GRGPFSKLGKGGIRRIIKPGQVF-----SRIHVEDIAQVLAASMARP 199

Query: 246 NAKGRY-ICSSHPATILELAKFLREKY----PEFNVPTEFEDVDENMKNMLFSSKKL--- 297
           +    Y +C   P    ++  +  E      P   V  +  D+    ++    +K++   
Sbjct: 200 DPGAVYNVCDDEPVPPQDVIAYAAELQGLPLPPA-VDFDKADLTPMARSFYSENKRVRND 258

Query: 298 ---TDLGFKFKY 306
               +LG + KY
Sbjct: 259 RIKEELGVRLKY 270

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 57/342 (16%), Positives = 113/342 (33%), Gaps = 79/342 (23%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRD---PDNKKKVKHLLELP----KASTHLT 59
           T+ +TG +GF+GS L     E     +  V D    +          L            
Sbjct: 12  TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71

Query: 60  LWKADLAEEGNFDEPI-RGCTGVFHLA----TPMDFESKDPENEVIRPTINGMVSIMRAC 114
           +  AD+    +           +FH A    T M     + E  V++      ++++   
Sbjct: 72  VIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM----LNQE-LVMKTNYQAFLNLLEIA 126

Query: 115 KNAKTVRRLVFTSSAGT-------LDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK 167
           ++ K   ++++ SSAG          V ++  P                     +Y  SK
Sbjct: 127 RSKKA--KVIYASSAGVYGNTKAPNVVGKNESPEN-------------------VYGFSK 165

Query: 168 TLAEQAAWKFAEENNIDFISIIPSL----VVGPF-----LTSSMPPSLITALSPITRNEA 218
              ++  +  +  N+   +     L    V GP       T+SM   L          + 
Sbjct: 166 LCMDE--FVLSHSNDNVQV----GLRYFNVYGPREFYKEKTASMVLQLALG---AMAFKE 216

Query: 219 HYPII-KQGQ----FVHLDDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKYP 272
               + + G+    FV+++D+  A++   +   + G Y +  S   +  E+   L+E   
Sbjct: 217 --VKLFEFGEQLRDFVYIEDVIQANVKAMKAQKS-GVYNVGYSQARSYNEIVSILKEHLG 273

Query: 273 EFNVP-TEFE---DVDENMKNMLFSSKKLTDLGFKFKYSLDD 310
           +F V   +            ++      + DL +   Y L+ 
Sbjct: 274 DFKVTYIKNPYAFFQKHTQAHI---EPTILDLDYTPLYDLES 312

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 46/268 (17%), Positives = 78/268 (29%), Gaps = 58/268 (21%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVR--ATVRDPDNKKKVKHLLELPKASTHL 58
           M S  + V + GA+G  G  L+ R+L      +  A  R        K L E P+    +
Sbjct: 1   MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR--------KALAEHPRLDNPV 52

Query: 59  TLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK 118
                 L +     +    C G          +    E        +  +++ +      
Sbjct: 53  GPLAELLPQLDGSIDTAFCCLGTTI-------KEAGSEEAFRAVDFDLPLAVGKRALEMG 105

Query: 119 TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFA 178
             R  +  S+ G            D  S                Y   K   EQA     
Sbjct: 106 -ARHYLVVSALGA-----------DAKSSI-------------FYNRVKGELEQA----L 136

Query: 179 EENNIDFISII-PSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSA 237
           +E     ++I  PSL+ GP     +   L   ++ I        +  +   +   DL  A
Sbjct: 137 QEQGWPQLTIARPSLLFGPREEFRLAEILAAPIARI--------LPGKYHGIEACDLARA 188

Query: 238 HIFLFEHPNAKGRYICSSHPATILELAK 265
              L        R++       + +L K
Sbjct: 189 LWRLALEEGKGVRFV---ESDELRKLGK 213

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 46/324 (14%), Positives = 88/324 (27%), Gaps = 65/324 (20%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           TV +TG+ G +G  L  +L   G+ V   VR      K                W     
Sbjct: 149 TVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKR--------------FW----D 190

Query: 67  EEGNFDEPIRGCTGVFHL--ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
                 + + G   + HL         +   +  +    +     +      +     ++
Sbjct: 191 PLNPASDLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMI 250

Query: 125 FTSSA----GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
            ++SA    G    +E    +  E S S  DF+  V    W         E A    A +
Sbjct: 251 -SASAVGFYGHDRGDE----ILTEESESGDDFLAEV-CRDW---------EHATAP-ASD 294

Query: 181 NNIDFISIIPSLVVGP---FLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSA 237
                  I   + +      L                   + +       ++ +DDL   
Sbjct: 295 AGKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSWFS------WIAIDDLTDI 348

Query: 238 HIFLFEHPNAKGRY-ICSSHPATILELAKFLREKY--------PEFNVPTEFEDVDENMK 288
           +          G     + +P +  ++ K L            P            +  +
Sbjct: 349 YYRAIVDAQISGPINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLG--SQGAE 406

Query: 289 NMLFSS-----KKLTDLGFKFKYS 307
            +  +S       L +L   F+Y+
Sbjct: 407 ELALASQRTAPAALENLSHTFRYT 430

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 27/135 (20%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKASTHLTLW 61
            + +TG +G +GS LI   L +G+ +       DN     ++ +  +         L++ 
Sbjct: 22  RILITGGAGCLGSNLIEHWLPQGHEILVI----DNFATGKREVLPPVAG-------LSVI 70

Query: 62  KADLAEEGNFDEPIRGC--TGVFHLATPMDFESKDPENEVIRPT---INGMVSIMRACKN 116
           +  + + G  +        T V H A       KDP++         + G +++ +A   
Sbjct: 71  EGSVTDAGLLERAFDSFKPTHVVHSAA----AYKDPDD-WAEDAATNVQGSINVAKAASK 125

Query: 117 AKTVRRLVFTSSAGT 131
           A  V+RL+   +A  
Sbjct: 126 AG-VKRLLNFQTALC 139

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357

 Score = 58.7 bits (142), Expect = 7e-10
 Identities = 57/336 (16%), Positives = 118/336 (35%), Gaps = 56/336 (16%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V VTG +GF G WL + L   G  V+              L E  + +  +     D+ +
Sbjct: 12  VFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS---LFETARVADGMQSEIGDIRD 68

Query: 68  EGNFDEPIRGC--TGVFHLAT-PMDFES-KDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
           +    E IR      VFH+A  P+   S  +P  E     + G V ++ A ++   V+ +
Sbjct: 69  QNKLLESIREFQPEIVFHMAAQPLVRLSYSEPV-ETYSTNVMGTVYLLEAIRHVGGVKAV 127

Query: 124 VFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF-VSKTLAEQA--AWKFAEE 180
           V  +S    D +E               +  +  M G+  +  SK  AE    +++ +  
Sbjct: 128 VNITSDKCYDNKEWIWG-----------YRENEAMGGYDPYSNSKGCAELVTSSYRNSFF 176

Query: 181 NNIDFISIIPSLVV---------GPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV-- 229
           N  ++     ++           G +    + P ++ A     +++    II+    +  
Sbjct: 177 NPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFE---QSQP--VIIRNPHAIRP 231

Query: 230 --HLDDLCSAHIFLFEHPNAKGRYICSS--------HPATILELAKFLREKYPEFNVPTE 279
             H+ +  S ++ L +     G                  +  + + + + + E      
Sbjct: 232 WQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGE---GAS 288

Query: 280 FEDVDENMKN-----MLFSSKKLTDLGFKFKYSLDD 310
           ++       +      L  SK    LG+  +++L+ 
Sbjct: 289 WQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNT 324

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307

 Score = 58.0 bits (140), Expect = 9e-10
 Identities = 40/295 (13%), Positives = 89/295 (30%), Gaps = 57/295 (19%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKA--STHLTLWKAD 64
            + + G +G IG  ++   ++ G    A VR        +   EL     S  + L + D
Sbjct: 4   KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           + +     + I+    V   A  +  E +              V I++A K A  V++  
Sbjct: 64  INDHETLVKAIKQVDIVICAAGRLLIEDQ--------------VKIIKAIKEAGNVKKFF 109

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
            +     +D  +  +PV                      F  K     +  +  E   + 
Sbjct: 110 PSEFGLDVDRHDAVEPVRQ-------------------VFEEK----ASIRRVIEAEGVP 146

Query: 185 FISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY------PIIKQGQFVHLDDLCSAH 238
           +  +        F    +        +   R++                +V   D+ +  
Sbjct: 147 YTYLCC----HAFTGYFLRNLAQLDATDPPRDKVVILGDGNVKGA----YVTEADVGTFT 198

Query: 239 IFLFEHPNAKGRYIC---SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNM 290
           I     PN   + +      +  T  E+     +K  +  +   +   ++ +K++
Sbjct: 199 IRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGK-TLEKTYVSEEQVLKDI 252

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 54/306 (17%), Positives = 103/306 (33%), Gaps = 62/306 (20%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLT 59
           MGS    + + GA+G+IG  +    L+ G+     VR+   +    K  L     ++   
Sbjct: 1   MGSR-SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGAN 59

Query: 60  LWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT 119
           +    + +  +  E ++    V      +  ES+              V+I++A K   T
Sbjct: 60  IVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQ--------------VNIIKAIKEVGT 105

Query: 120 VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
           V+R  F S  G            D  +   ++  +SV       F  K    +A     E
Sbjct: 106 VKR-FFPSEFGN-----------DVDNVHAVEPAKSV-------FEVKAKVRRA----IE 142

Query: 180 ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG------QFVHLDD 233
              I +  +        F    +       L+   R++        G       FV  +D
Sbjct: 143 AEGIPYTYV----SSNCFAGYFLRSLAQAGLTAPPRDKVVIL----GDGNARVVFVKEED 194

Query: 234 LCSAHIFLFEHPNA--KGRYIC-SSHPATILELAKFLRE----KYPEFNVPTEFEDVDEN 286
           + +  I   + P    K  Y+   ++  ++ EL     +       +  VP   E+V + 
Sbjct: 195 IGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPE--EEVLKL 252

Query: 287 MKNMLF 292
           + +  F
Sbjct: 253 IADTPF 258

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 59/308 (19%), Positives = 117/308 (37%), Gaps = 65/308 (21%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKAS 55
           M    + + +TG +GF+GS L  +L+  G+ V       DN     K+ V+H +      
Sbjct: 23  MEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVV----DNFFTGRKRNVEHWIGHE--- 75

Query: 56  THLTLWKADLAEE--GNFDEPIRGCTGVFHLA---TPMDFESKDPENEVIRPTINGMVSI 110
            +  L   D+ E      D+       ++HLA   +P ++   +P  + ++    G +++
Sbjct: 76  -NFELINHDVVEPLYIEVDQ-------IYHLASPASPPNYM-YNPI-KTLKTNTIGTLNM 125

Query: 111 MRACKNAKTVRRLVFTSSA---GTLDVEEHRKPVYDETSWSDLDFVRSVKMTG--WMYFV 165
           +   K      RL+  S++   G  D E H +    E  W        V   G    Y  
Sbjct: 126 LGLAKRVGA--RLLLASTSEVYG--DPEVHPQS---EDYW------GHVNPIGPRACYDE 172

Query: 166 SKTLAEQAAWKFAEENNIDFISIIPSL-VVGPFLTSS----MPPSLITALS--PITRNEA 218
            K +AE   + + ++  ++ + +       GP +  +    +   ++ AL   P+T    
Sbjct: 173 GKRVAETMCYAYMKQEGVE-VRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLT---- 227

Query: 219 HYPIIKQGQ----FVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEF 274
              +   G     F ++ DL +  + L     +    + +    TILE A+ ++      
Sbjct: 228 ---VYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGS- 283

Query: 275 NVPTEFED 282
               +F  
Sbjct: 284 GSEIQFLS 291

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYA--VRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
           ++ VTGA+G +G  +I  LL++  A  + A VR+ +   K   L     A   + +   D
Sbjct: 2   SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVE---KASTL-----ADQGVEVRHGD 53

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
             +  +  +   G + +    +   +++           I    ++++A ++A  V+ + 
Sbjct: 54  YNQPESLQKAFAGVSKLL-FISGPHYDNTLL--------IVQHANVVKAARDAG-VKHIA 103

Query: 125 FTSSAG 130
           +T  A 
Sbjct: 104 YTGYAF 109

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 20/125 (16%), Positives = 43/125 (34%), Gaps = 19/125 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
            + +TGA+G +G+ +  + +          VR+ +   KV            +++ + D 
Sbjct: 2   NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVE---KVPDD-----WRGKVSVRQLDY 53

Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
             + +  E  +G   V      +   S     EV          ++ A K +  V  ++F
Sbjct: 54  FNQESMVEAFKGMDTVV-FIPSIIHPSFKRIPEVEN--------LVYAAKQSG-VAHIIF 103

Query: 126 TSSAG 130
                
Sbjct: 104 IGYYA 108

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 22/123 (17%)

Query: 10  VTGASGFIGSWLIMRLLERGYA--VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           +TGA+G +G ++I  L++   A  + A VR+P    K + L     A+  +T+ +AD  +
Sbjct: 4   ITGATGQLGHYVIESLMKTVPASQIVAIVRNPA---KAQAL-----AAQGITVRQADYGD 55

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
           E      ++G   +  +++    +       VI            A K A  V+ + +TS
Sbjct: 56  EAALTSALQGVEKLLLISSSEVGQRAPQHRNVI-----------NAAKAAG-VKFIAYTS 103

Query: 128 SAG 130
              
Sbjct: 104 LLH 106

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 13/167 (7%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL 60
           M      V + G +G+IG  ++   +  G+      R        K  + L        L
Sbjct: 1   MDKK-SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKL 59

Query: 61  WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV 120
            +A L +     + ++    V              E           + ++ A K A  +
Sbjct: 60  IEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQ----------LKLVEAIKEAGNI 109

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG--WMYFV 165
           +R + +      D+ EH       T        R+++     + Y  
Sbjct: 110 KRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVS 156

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 41/297 (13%), Positives = 85/297 (28%), Gaps = 62/297 (20%)

Query: 3   SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWK 62
            +   + + G +G+IG+ ++   L+ G+      R   +K  +    +   A     + K
Sbjct: 9   GMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGA----IIVK 64

Query: 63  ADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
            +L E     E ++    V           +                I+ A K A  ++R
Sbjct: 65  GELDEHEKLVELMKKVDVVISALAFPQILDQFK--------------ILEAIKVAGNIKR 110

Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
            + +                      + D + ++     +        ++   +  EE N
Sbjct: 111 FLPSDFG------------------VEEDRINALPPFEALI-----ERKRMIRRAIEEAN 147

Query: 183 IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY------PIIKQGQFVHLDDLCS 236
           I +  +        F +  +   L        ++E                  +  D+  
Sbjct: 148 IPYTYV----SANCFASYFINYLLRPYDP---KDEITVYGTGEAKF----AMNYEQDIGL 196

Query: 237 AHIFLFEHPNAKGR---YICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNM 290
             I +   P A  R   Y  S++  T LEL     EK             +E +   
Sbjct: 197 YTIKVATDPRALNRVVIYRPSTNIITQLELISRW-EKKIGKKFKKIHVPEEEIVALT 252

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 30/295 (10%), Positives = 80/295 (27%), Gaps = 56/295 (18%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKAD 64
           E + + G +G+IG +++   L   +      R    +       L     S  +T+ + +
Sbjct: 5   EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           + E       ++    V          S+              + I+ A K A  ++R +
Sbjct: 65  MEEHEKMVSVLKQVDIVISALPFPMISSQ--------------IHIINAIKAAGNIKRFL 110

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
            +                      + D ++ +     +        ++   +  E   + 
Sbjct: 111 PSDFG------------------CEEDRIKPLPPFESVL-----EKKRIIRRAIEAAALP 147

Query: 185 FISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY------PIIKQGQFVHLDDLCSAH 238
           +  +        F    +   L  +  P   ++                  + +D+    
Sbjct: 148 YTYV----SANCFGAYFVNYLLHPSPHPNRNDDIVIYGTGETKF----VLNYEEDIAKYT 199

Query: 239 IFLFEHPNAKGRYIC---SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNM 290
           I +   P    R +      +  +  EL     E     +        ++ ++  
Sbjct: 200 IKVACDPRCCNRIVIYRPPKNIISQNELISLW-EAKSGLSFKKVHMPDEQLVRLS 253

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 41/150 (27%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRD------PDNKKKVKHLLELPKA 54
             S ++ V VTG +G+IGS  ++ L+E GY     V D       D+  +++ L      
Sbjct: 7   SESTSKIVLVTGGAGYIGSHTVVELIENGYDC--VVADNLSNSTYDSVARLEVL-----T 59

Query: 55  STHLTLWKADLAEEGNFDE-----PIRGCTGVFHLATPMDF----ESKDPENEVIRPT-- 103
             H+  ++ DL +    ++      I     V H A         ES         P   
Sbjct: 60  KHHIPFYEVDLCDRKGLEKVFKEYKI---DSVIHFAG---LKAVGES------TQIPLRY 107

Query: 104 ----INGMVSIMRACKNAKTVRRLVFTSSA 129
               I G V ++   +    V + VF+SSA
Sbjct: 108 YHNNILGTVVLLELMQQYN-VSKFVFSSSA 136

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 43/150 (28%)

Query: 5   AETVCVTGASGFIGSWLIMRLLERGYAV----------RATVRDPDNKKKVKHLLELPKA 54
           AE V VTG +G+IGS  ++ LLE GY            R     P++ ++V+ L      
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL-----T 56

Query: 55  STHLTLWKADLAEEGNFDE-----PIRGCTGVFHLATPMDF----ESKDPENEVIRPT-- 103
              +   + D+ ++G                V H A         ES      V +P   
Sbjct: 57  GRSVEFEEMDILDQGALQRLFKKYSF---MAVIHFAG---LKAVGES------VQKPLDY 104

Query: 104 ----INGMVSIMRACKNAKTVRRLVFTSSA 129
               + G + ++   K    V+ LVF+SSA
Sbjct: 105 YRVNLTGTIQLLEIMKAHG-VKNLVFSSSA 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 37/306 (12%), Positives = 96/306 (31%), Gaps = 76/306 (24%)

Query: 88  MDFESKDPE---NEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEE-HRKPVYD 143
           MDFE+ + +    +++    +  V     CK+ + + + + +      +++         
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKE----EIDHIIMSKDAV 61

Query: 144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAW---KFAEENNIDFISIIPSLVVGPFLTS 200
             +      + S +      FV + L     +       E         PS++   ++  
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ------PSMMTRMYIEQ 115

Query: 201 SMP----PSLITALSPITRNEAHYPI------IKQGQFVHLD------------DLCSAH 238
                    +    + ++R + +  +      ++  + V +D            D+C ++
Sbjct: 116 RDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 239 IFLFEHPNAKGRYI----CSSHPATILELAKFLREKYPEF--------NVPTEFEDVDEN 286
               +    K  ++    C+S    +  L K L +  P +        N+      +   
Sbjct: 175 KVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 287 MKNMLFSSKKLTDLGFKFKYSL---DDMFTG----AVD-------TCRAKGLLPLLCENH 332
           ++  L  SK        ++  L    ++       A +       T R K +   L    
Sbjct: 234 LRR-LLKSK-------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 333 VSEVSI 338
            + +S+
Sbjct: 286 TTHISL 291

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 15/142 (10%)

Query: 1   MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKKVKHLLELPKASTHLT 59
           + S    V + GA+GFIG ++    L+         R  P +  K K    L      + 
Sbjct: 6   VPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIV 65

Query: 60  LWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT 119
                + E+   ++ ++       + + +  ES   +  ++           +A K   T
Sbjct: 66  --YGLINEQEAMEKILKEHEIDI-VVSTVGGESILDQIALV-----------KAMKAVGT 111

Query: 120 VRRLVFTSSAGTLDVEEHRKPV 141
           ++R + +     ++  +  +P 
Sbjct: 112 IKRFLPSEFGHDVNRADPVEPG 133

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score = 42.8 bits (102), Expect = 8e-05
 Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 41/148 (27%)

Query: 3   SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRD------PDNKKKVKHLLELPKAST 56
           S   T+ VTG +G+IGS   + LL  GY V   + D       +   +++ +        
Sbjct: 3   STKGTILVTGGAGYIGSHTAVELLAHGYDV--VIADNLVNSKREAIARIEKI-----TGK 55

Query: 57  HLTLWKADLAEEGNFDE-----PIRGCTGVFHLATPMDF----ESKDPENEVIRPT---- 103
                + D+++E          PI   T   H A         ES      V +P     
Sbjct: 56  TPAFHETDVSDERALARIFDAHPI---TAAIHFAA---LKAVGES------VAKPIEYYR 103

Query: 104 --INGMVSIMRACKNAKTVRRLVFTSSA 129
             ++ ++S++R  +    V+R+VF+SSA
Sbjct: 104 NNLDSLLSLLRVMRERA-VKRIVFSSSA 130

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338

 Score = 42.8 bits (102), Expect = 9e-05
 Identities = 37/144 (25%), Positives = 56/144 (38%), Gaps = 41/144 (28%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRD------PDNKKKVKHLLELPKASTHLTL 60
            V VTG SG+IGS   ++LL+ G+ V   + D            ++ L        H T 
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDV--IILDNLCNSKRSVLPVIERL-----GGKHPTF 54

Query: 61  WKADLAEEGNFDE-----PIRGCTGVFHLATPMDF----ESKDPENEVIRPT------IN 105
            + D+  E    E      I     V H A         ES      V +P       +N
Sbjct: 55  VEGDIRNEALMTEILHDHAI---DTVIHFAG---LKAVGES------VQKPLEYYDNNVN 102

Query: 106 GMVSIMRACKNAKTVRRLVFTSSA 129
           G + ++ A + A  V+  +F+SSA
Sbjct: 103 GTLRLISAMRAAN-VKNFIFSSSA 125

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 1  MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD 40
          M   A+   VTGAS   G  +    +  G  V  T R  +
Sbjct: 1  MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTE 40

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 38/158 (24%)

Query: 182 NIDFISIIPSLVVGP-----FLTSSMPPSLI----TALSPITRNEAHYPIIKQGQ----F 228
             D+ S++P+ + GP        S + P+L+     A     +      +   G     F
Sbjct: 155 GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEA---TAQKAPDVVVWGSGTPMREF 211

Query: 229 VHLDDLCSAHIFLFEHPNAKGRYICSSHPA----------TILELAKFLREKYPEFNVPT 278
           +H+DD+ +A I + E  +           +          TI ELA+ + +    +    
Sbjct: 212 LHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV-GYKGRV 270

Query: 279 EFEDVDENM------KNMLFSSKKLTDLGFKFKYSLDD 310
            F   D +       K +     +L  LG+  + SL+ 
Sbjct: 271 VF---DASKPDGTPRKLL--DVTRLHQLGWYHEISLEA 303

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 33/158 (20%), Positives = 58/158 (36%), Gaps = 51/158 (32%)

Query: 7   TVCVTGASGFIGSWLIMRLL-ERGYAV----------RATVRDPDNKKKVKHLLEL---- 51
            V V G +G+IGS  +  LL +  ++V            +      +   + L +     
Sbjct: 4   RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63

Query: 52  -PKASTHLTLWKADL----------AEEGNFDEPIRGCTGVFHLATPMDF----ES-KDP 95
            P A  +  L   D+             G  D        V H+     F    ES +DP
Sbjct: 64  PPWADRYAALEVGDVRNEDFLNGVFTRHGPID-------AVVHMCA---FLAVGESVRDP 113

Query: 96  ----ENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA 129
               +N V+     G++ +++A    K   +++F+SSA
Sbjct: 114 LKYYDNNVV-----GILRLLQAMLLHK-CDKIIFSSSA 145

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 1  MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK 46
          M    + + +TGAS   G      L   G+ V A++RD   +    
Sbjct: 1  MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASN 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	100.0
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	100.0
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	100.0
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	100.0
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	100.0
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	100.0
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	100.0
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	100.0
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	100.0
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	100.0
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	100.0
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	100.0
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	100.0
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	100.0
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	100.0
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	100.0
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	100.0
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	100.0
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	100.0
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	100.0
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	100.0
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	100.0
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	100.0
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	100.0
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	100.0
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	100.0
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	100.0
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	100.0
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	100.0
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	100.0
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	100.0
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	100.0
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	100.0
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	100.0
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	100.0
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	100.0
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	100.0
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	100.0
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	100.0
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	100.0
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	100.0
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	100.0
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	100.0
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	100.0
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	100.0
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	100.0
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	100.0
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	100.0
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	100.0
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	100.0
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	100.0
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	100.0
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	100.0
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	100.0
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	100.0
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	100.0
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	100.0
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	100.0
4f6c_A	427	AUSA reductase domain protein; thioester reductase	100.0
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	100.0
4f6l_B	508	AUSA reductase domain protein; thioester reductase	100.0
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	100.0
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	100.0
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	100.0
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	100.0
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	100.0
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	100.0
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	100.0
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	100.0
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	100.0
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	100.0
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.98
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.97
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.97
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.97
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.97
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.97
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.97
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.97
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.96
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.96
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.96
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.96
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.95
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.95
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.94
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.94
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.94
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.94
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.94
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.94
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.94
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.94
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.93
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.93
1spx_A	278	Short-chain reductase family member (5L265); paral	99.93
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.93
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.93
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.93
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.93
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.93
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.93
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.93
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.92
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.92
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.92
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.92
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.92
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.92
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.92
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.92
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.92
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.92
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.92
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.92
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.92
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.92
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.92
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.92
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.92
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.92
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.92
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.92
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.92
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.91
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.91
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.91
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.91
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.91
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.91
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.91
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.91
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.91
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.91
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.91
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.91
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.91
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.91
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.91
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.91
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.91
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.91
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.91
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.91
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.91
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.91
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.91
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.91
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.91
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.91
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.91
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.91
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.91
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.91
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.91
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.91
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.91
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.91
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.91
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.91
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.9
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.9
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.9
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.9
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.9
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.9
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.9
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.9
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.9
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.9
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.9
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.9
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.9
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.9
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.9
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.9
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.9
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.9
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.9
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.9
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.9
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.9
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.9
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.9
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.9
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.9
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.9
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.9
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.9
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.9
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.89
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.89
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.89
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.89
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.89
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.89
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.89
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.89
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.89
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.89
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.89
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.89
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.89
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.89
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.89
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.89
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.89
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.89
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.89
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.89
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.89
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.89
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.89
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.89
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.89
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.89
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.89
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.89
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.89
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.89
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.89
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.89
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.89
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.89
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.89
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.89
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.89
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.89
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.89
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.89
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.89
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.89
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.88
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.88
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.88
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.88
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.88
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.88
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.88
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.88
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.88
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.88
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.88
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.88
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.88
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.88
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.88
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.88
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.88
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.88
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.88
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.88
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.88
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.88
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.88
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.87
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.87
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.87
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.87
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.87
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.87
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.87
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.87
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.87
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.87
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.87
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.87
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.87
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.87
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.86
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.86
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.86
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.85
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.85
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.85
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.85
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.85
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.85
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.84
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.84
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.84
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.84
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.83
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.83
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.82
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.82
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.82
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.81
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.81
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.81
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.81
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.8
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.8
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.8
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.8
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.79
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.78
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.77
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.75
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.71
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.7
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.68
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.65
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.64
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.55
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.54
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.48
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.48
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.45
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.45
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.44
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.43
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.42
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.37
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.35
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.19
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	99.18
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.1
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	99.02
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	99.01
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	98.82
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.82
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.77
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.72
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.72
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.71
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.67
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.64
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.61
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.53
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	98.52
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.48
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.44
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.44
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.4
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.37
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.33
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.33
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.31
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	98.2
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.18
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.18
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.15
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.14
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.14
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	98.12
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.09
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.08
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.06
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.04
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.97
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.97
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.95
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.93
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.93
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.9
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.89
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.88
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.88
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.88
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.85
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.85
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.85
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.84
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.82
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.82
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.81
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.79
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.77
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.76
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.75
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.72
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.71
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.69
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.64
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.62
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.61
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.61
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.61
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.58
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.58
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.56
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.56
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.56
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.55
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.55
1lnq_A	336	MTHK channels, potassium channel related protein;	97.54
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.54
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.53
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.52
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.51
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.5
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.5
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.49
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.48
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.48
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.46
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.46
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.42
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.38
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.38
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.35
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.34
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.33
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.33
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.32
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.32
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.32
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.32
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	97.3
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.29
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.29
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.29
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.29
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.26
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.25
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.25
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.24
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.24
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.23
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.22
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.22
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.22
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.19
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.19
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.19
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.18
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.17
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.16
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.15
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.14
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.14
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.11
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.11
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.11
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.11
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.1
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.09
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.08
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.08
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.07
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.06
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.05
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.04
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.03
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.01
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.98
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.98
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.97
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.97
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.97
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.96
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.96
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.95
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.93
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.92
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.92
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.92
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.89
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.88
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.87
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.86
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.86
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.84
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.83
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.83
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.82
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.82
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.82
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.81
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.81
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.81
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.8
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.8
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.79
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.78
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.78
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.78
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.78
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.75
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.75
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.75
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.74
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	96.73
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.72
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.72
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.7
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.69
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.69
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.68
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.67
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.66
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.65
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.65
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.64
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.64
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.64
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.63
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.62
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.62

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=100.00  E-value=1.1e-49  Score=355.44  Aligned_cols=331  Identities=79%  Similarity=1.311  Sum_probs=245.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |+.++|+||||||+||||++++++|+++|++|++++|+.....+...+...+....+++++.+|++|.+++.++++++|+
T Consensus         1 ~~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (337)
T 2c29_D            1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTG   80 (337)
T ss_dssp             -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSE
T ss_pred             CCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCE
Confidence            77788999999999999999999999999999999998775444433322221113689999999999999999999999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |||+|+.......++....++.|+.++.+++++|.+.+.+++|||+||.++++.......+++|++|...+...+...|.
T Consensus        81 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  160 (337)
T 2c29_D           81 VFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTA  160 (337)
T ss_dssp             EEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred             EEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCcc
Confidence            99999876433233334588999999999999998765468999999988544222334567888766544332233466


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  240 (338)
                      +.|+.+|.++|.+++.+++++|++++++||+++|||+....+...+........+....+......+|+|++|+|++++.
T Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~  240 (337)
T 2c29_D          161 WMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY  240 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHH
Confidence            78999999999999998877899999999999999986554443332221112232222222222459999999999999


Q ss_pred             hhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcccccHHHHHHHHHHHHH
Q 040253          241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~~~~~~  320 (338)
                      +++++...+.|++++...|++|+++.+.+.++...+|..+...+.......+|++++++|||+|+++++++|+++++|++
T Consensus       241 ~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~e~l~~~~~~~~  320 (337)
T 2c29_D          241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCR  320 (337)
T ss_dssp             HHHCTTCCEEEEECCEEEEHHHHHHHHHHHCTTSCCCSCCTTCCTTCCCCEECCHHHHHHTCCCCCCHHHHHHHHHHHHH
T ss_pred             HhcCcccCceEEEeCCCCCHHHHHHHHHHHCCCccCCCCCCcccCCCccccccHHHHHHcCCCcCCCHHHHHHHHHHHHH
Confidence            99876666788887777999999999999886555554443333334556788999966999999999999999999999


Q ss_pred             HcCCCCCccCC
Q 040253          321 AKGLLPLLCEN  331 (338)
Q Consensus       321 ~~~~~~~~~~~  331 (338)
                      +.+.++...+.
T Consensus       321 ~~~~~~~~~~~  331 (337)
T 2c29_D          321 AKGLLPPSHEK  331 (337)
T ss_dssp             HTTSSCSCC--
T ss_pred             HcCCCCccccC
Confidence            99988765443

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=100.00  E-value=1.4e-47  Score=338.04  Aligned_cols=296  Identities=15%  Similarity=0.217  Sum_probs=233.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|+|||||||||||++++++|+++|++|++++|++.... +          ++++++.+|++ .+++.++++++|+|||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~----------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~   69 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I----------NDYEYRVSDYT-LEDLINQLNDVDAVVHL   69 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC----------------CCEEEECCCC-HHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C----------CceEEEEcccc-HHHHHHhhcCCCEEEEc
Confidence            589999999999999999999999999999999844322 2          37899999999 99999999999999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHH
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      |+.....   .....++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|++         +..|.+.|+
T Consensus        70 a~~~~~~---~~~~~~~~n~~~~~~ll~a~~~~~-~~r~v~~SS~~vyg--~~~~~~~~E~~---------~~~p~~~Y~  134 (311)
T 3m2p_A           70 AATRGSQ---GKISEFHDNEILTQNLYDACYENN-ISNIVYASTISAYS--DETSLPWNEKE---------LPLPDLMYG  134 (311)
T ss_dssp             CCCCCSS---SCGGGTHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGCC--CGGGCSBCTTS---------CCCCSSHHH
T ss_pred             cccCCCC---ChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEccHHHhC--CCCCCCCCCCC---------CCCCCchhH
Confidence            9976643   345789999999999999999998 89999999999998  44456788887         556888999


Q ss_pred             HHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhh-hcccCCCCC-CCCCC-CccccHHHHHHHHHHh
Q 040253          165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALS-PITRNEAHY-PIIKQ-GQFVHLDDLCSAHIFL  241 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~-~~~i~v~D~a~~~~~~  241 (338)
                      .+|+++|.+++.+++++|++++++||+++|||+....  ..+..++. ...+....+ +.+.. ++++|++|+|++++.+
T Consensus       135 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~  212 (311)
T 3m2p_A          135 VSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN--YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYA  212 (311)
T ss_dssp             HHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C--CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC--CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHH
Confidence            9999999999999998999999999999999987643  12222221 122433322 33333 6899999999999999


Q ss_pred             hcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCC-ccccccccccchhhhhh-cCCcccccHHHHHHHHHHH
Q 040253          242 FEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFED-VDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDT  318 (338)
Q Consensus       242 l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~  318 (338)
                      ++++..+++||+ +++++|+.|+++.+.+.+|.......... .+.......+|++++++ |||+|+++++++|+++++|
T Consensus       213 ~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~  292 (311)
T 3m2p_A          213 LKQEKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLL  292 (311)
T ss_dssp             TTCTTCCEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHH
T ss_pred             HhcCCCCCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHH
Confidence            998877779988 56889999999999999985322222222 34456677899999998 9999999999999999999


Q ss_pred             HHHcCCCCCcc
Q 040253          319 CRAKGLLPLLC  329 (338)
Q Consensus       319 ~~~~~~~~~~~  329 (338)
                      +++.+..+.+-
T Consensus       293 ~~~~~~~~~~~  303 (311)
T 3m2p_A          293 MRGLDDVPLWY  303 (311)
T ss_dssp             HCC--------
T ss_pred             HHhcccCccee
Confidence            99988876543

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=100.00  E-value=5.9e-47  Score=335.69  Aligned_cols=318  Identities=42%  Similarity=0.801  Sum_probs=229.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +|+||||||+||||++++++|+++|++|++++| ++........+..++....+++++.+|++|.+++.++++++|+|||
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            478999999999999999999999999999998 5432111111111111013688999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+.......++...+++.|+.++.++++++.+. + +++|||+||.++++.......+++|++|...+...+..+..+.
T Consensus        81 ~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~  159 (322)
T 2p4h_X           81 TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT-VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWN  159 (322)
T ss_dssp             CCCCC--------CHHHHHHHHHHHHHHHHHTTCSS-CCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTHH
T ss_pred             cCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCC-ccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccccc
Confidence            9986533222333458999999999999999987 6 7899999998755422223446788776544332222212237


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLF  242 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  242 (338)
                      |+.+|.++|.++.++++++|++++++||+++|||+........+........+....++. ...+++|++|+|++++.++
T Consensus       160 Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~i~v~Dva~a~~~~~  238 (322)
T 2p4h_X          160 YAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGV-TRFHMVHVDDVARAHIYLL  238 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCCE-EEEEEEEHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCcC-CCcCEEEHHHHHHHHHHHh
Confidence            999999999999999888899999999999999986543333222221212233222322 2347999999999999999


Q ss_pred             cCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCC--CCCccccccccccchhhhhhcCCcccccHHHHHHHHHHHHH
Q 040253          243 EHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTE--FEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~~~~~~  320 (338)
                      +++...|.||++++++|+.|+++.+.+.++...+|..  +...+.. ....+|++++++|||+|+++++++|+++++|++
T Consensus       239 ~~~~~~g~~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~lG~~p~~~~~~~l~~~~~~~~  317 (322)
T 2p4h_X          239 ENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGA-RLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCK  317 (322)
T ss_dssp             HSCCCCEEEECCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCCCE-ECCEECCHHHHHTTCCCCCCHHHHHHHHHHHHH
T ss_pred             hCcCCCCCEEEcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCCCC-cceecccHHHHHhCCccCCCHHHHHHHHHHHHH
Confidence            8765556799877889999999999998865445443  2221112 456788999977999999999999999999999


Q ss_pred             HcCCC
Q 040253          321 AKGLL  325 (338)
Q Consensus       321 ~~~~~  325 (338)
                      +++.+
T Consensus       318 ~~~~~  322 (322)
T 2p4h_X          318 EKGYL  322 (322)
T ss_dssp             HHTCC
T ss_pred             hcCCC
Confidence            87753

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=100.00  E-value=9.7e-48  Score=343.05  Aligned_cols=321  Identities=48%  Similarity=0.830  Sum_probs=228.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ++|+||||||+||||++++++|+++|++|++++|+.++......+..++ ...+++++.+|++|++++.++++++|+|||
T Consensus         8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih   86 (338)
T 2rh8_A            8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIAGCDFVFH   86 (338)
T ss_dssp             -CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHTTCSEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHcCCCEEEE
Confidence            3589999999999999999999999999999999765422111111111 114689999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee-eeccC-CCCCCcCCCCCCchhhhhhccCCCc
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT-LDVEE-HRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v-~~~~~-~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      +|+.......++..++++.|+.++.+++++|.+.+.+++|||+||.++ |+... ....+++|++|...+...+..++.+
T Consensus        87 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  166 (338)
T 2rh8_A           87 VATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTW  166 (338)
T ss_dssp             ESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCCC
T ss_pred             eCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCccc
Confidence            998764332333345899999999999999998743789999999874 33111 1113678887654332222222334


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC-------CCCCccccHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI-------IKQGQFVHLDDL  234 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~v~D~  234 (338)
                      .|+.+|.++|.+++.+++++|++++++||+++|||+........+........+....++.       .+.++|+|++|+
T Consensus       167 ~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dv  246 (338)
T 2rh8_A          167 GYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDV  246 (338)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccccccccccccccCcccEEEHHHH
Confidence            7999999999999998887899999999999999986554433322221111222111110       011379999999


Q ss_pred             HHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcccccHHHHHHH
Q 040253          235 CSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTG  314 (338)
Q Consensus       235 a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~  314 (338)
                      |++++.+++++...+.||++++.+|+.|+++.+.+.++...+|..+...+.. ....+|++++++|||+|+++++++|++
T Consensus       247 a~a~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~d~~k~~~lG~~p~~~l~~gl~~  325 (338)
T 2rh8_A          247 CRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPK-SKLIISSEKLVKEGFSFKYGIEEIYDE  325 (338)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSEEECHHHHHHHHHHHCTTSCCCCCCTTSCSS-CSCCCCCHHHHHHTCCCSCCHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCcEEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCCCcC-cceeechHHHHHhCCCCCCCHHHHHHH
Confidence            9999999987666778988777799999999999988754555443332222 236788999977999999999999999


Q ss_pred             HHHHHHHcCCCC
Q 040253          315 AVDTCRAKGLLP  326 (338)
Q Consensus       315 ~~~~~~~~~~~~  326 (338)
                      +++|+++.+.++
T Consensus       326 ~~~~~~~~~~~~  337 (338)
T 2rh8_A          326 SVEYFKAKGLLQ  337 (338)
T ss_dssp             HHHHHHHTTCC-
T ss_pred             HHHHHHHcCCCC
Confidence            999999988763

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=100.00  E-value=1.4e-47  Score=343.86  Aligned_cols=308  Identities=17%  Similarity=0.161  Sum_probs=237.9

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCC--CCcEEEEecccCCCCCchhhhCCcc
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKA--STHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      .++|+|||||||||||++++++|+++|++|++++|+... ......+......  .++++++.+|++|++++.++++++|
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d  102 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD  102 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence            357899999999999999999999999999999997653 2223322221100  0478999999999999999999999


Q ss_pred             EEEEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           80 GVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        80 ~vi~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      +|||+|+.... .........++.|+.++.+++++|++.+ +++|||+||.++|+  .....+++|++         +..
T Consensus       103 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~v~~SS~~vyg--~~~~~~~~E~~---------~~~  170 (351)
T 3ruf_A          103 HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQ-VQSFTYAASSSTYG--DHPALPKVEEN---------IGN  170 (351)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGT--TCCCSSBCTTC---------CCC
T ss_pred             EEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEecHHhcC--CCCCCCCccCC---------CCC
Confidence            99999996441 1112334678999999999999999998 89999999999998  44556788887         446


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC--hhHHHhh-hhcccCCCC-CCCCCC-CccccHHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP--PSLITAL-SPITRNEAH-YPIIKQ-GQFVHLDD  233 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~-~~~~~~~~~-~~~~~~-~~~i~v~D  233 (338)
                      |.+.|+.+|+.+|.+++.+++++|++++++||+++|||+......  ..+..++ ....+.... ++.+.. ++|+|++|
T Consensus       171 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D  250 (351)
T 3ruf_A          171 PLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDN  250 (351)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHH
Confidence            888999999999999999999889999999999999998654311  1222222 222343332 233333 78999999


Q ss_pred             HHHHHHHhhcC--CCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-----CCCccccccccccchhhhhh-cCCcc
Q 040253          234 LCSAHIFLFEH--PNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-----FEDVDENMKNMLFSSKKLTD-LGFKF  304 (338)
Q Consensus       234 ~a~~~~~~l~~--~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-lg~~~  304 (338)
                      +|++++.++..  ...+++||+ +++++|+.|+++.+.+.+|.......     ....+.......+|++++++ |||+|
T Consensus       251 va~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p  330 (351)
T 3ruf_A          251 VIQMNILSALAKDSAKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRP  330 (351)
T ss_dssp             HHHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCC
T ss_pred             HHHHHHHHHhhccccCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCC
Confidence            99999999987  334668988 56889999999999999875222111     11123345567899999998 99999


Q ss_pred             cccHHHHHHHHHHHHHHc
Q 040253          305 KYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       305 ~~~~~~~i~~~~~~~~~~  322 (338)
                      +++++++|+++++|++++
T Consensus       331 ~~~~~~~l~~~~~~~~~~  348 (351)
T 3ruf_A          331 NIKIREGLRLSMPWYVRF  348 (351)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHh
Confidence            999999999999999864

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=100.00  E-value=1.1e-46  Score=332.77  Aligned_cols=294  Identities=21%  Similarity=0.229  Sum_probs=225.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ||+||||||+||||++++++|+++|+ ++++++.. ......         ..+++++.+|++| +++.++++++|+|||
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~-~v~~~~~~~~~~~~~---------~~~~~~~~~Dl~~-~~~~~~~~~~d~vih   69 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGNEEFV---------NEAARLVKADLAA-DDIKDYLKGAEEVWH   69 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTSC-EEEECCCSSCCGGGS---------CTTEEEECCCTTT-SCCHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEcCCCCChhhc---------CCCcEEEECcCCh-HHHHHHhcCCCEEEE
Confidence            47999999999999999999999995 55555533 322111         1578999999999 999999999999999


Q ss_pred             ecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+... ..........++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|+.         +..|.+.
T Consensus        70 ~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~-~~~iv~~SS~~vyg--~~~~~~~~E~~---------~~~~~~~  137 (313)
T 3ehe_A           70 IAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAG-VSRIVFTSTSTVYG--EAKVIPTPEDY---------PTHPISL  137 (313)
T ss_dssp             CCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGGC--SCSSSSBCTTS---------CCCCCSH
T ss_pred             CCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeCchHHhC--cCCCCCCCCCC---------CCCCCCH
Confidence            998644 22334556889999999999999999988 88999999999998  44556778876         4557889


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC--CCCCCCCC-CccccHHHHHHHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE--AHYPIIKQ-GQFVHLDDLCSAHI  239 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~i~v~D~a~~~~  239 (338)
                      |+.+|.++|.+++.+++++|++++++||+++|||+........+..  ....+..  ..++.+.+ ++|+|++|+|++++
T Consensus       138 Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~  215 (313)
T 3ehe_A          138 YGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTHGVIYDFIM--KLKRNPEELEILGNGEQNKSYIYISDCVDAML  215 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCCSHHHHHHH--HHHHCTTEEEESTTSCCEECCEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCcChHHHHHH--HHHcCCCceEEeCCCCeEEeEEEHHHHHHHHH
Confidence            9999999999999999999999999999999999865422111111  1112222  13444433 78999999999999


Q ss_pred             HhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCC----CccccccccccchhhhhhcCCcccccHHHHHHH
Q 040253          240 FLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFE----DVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTG  314 (338)
Q Consensus       240 ~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~  314 (338)
                      .+++....+++||+ +++++|+.|+++.+.+.+|.. .+....    .++.......+|++++++|||+|+++++++|++
T Consensus       216 ~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~  294 (313)
T 3ehe_A          216 FGLRGDERVNIFNIGSEDQIKVKRIAEIVCEELGLS-PRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRYNSEEAVRM  294 (313)
T ss_dssp             HHTTCCSSEEEEECCCSCCEEHHHHHHHHHHHTTCC-CEEEEC------------CCBCCHHHHHHTCCCSCCHHHHHHH
T ss_pred             HHhccCCCCceEEECCCCCeeHHHHHHHHHHHhCCC-CceEECCCccCCccccceeccCHHHHHHcCCCCCCCHHHHHHH
Confidence            99996666779998 467899999999999999752 222111    123344556789999988999999999999999


Q ss_pred             HHHHHHHcCC
Q 040253          315 AVDTCRAKGL  324 (338)
Q Consensus       315 ~~~~~~~~~~  324 (338)
                      +++|+++++.
T Consensus       295 ~~~~~~~~~~  304 (313)
T 3ehe_A          295 AVRDLVEDLD  304 (313)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhCcc
Confidence            9999987654

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=100.00  E-value=8.5e-47  Score=338.01  Aligned_cols=307  Identities=15%  Similarity=0.187  Sum_probs=231.9

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--   77 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--   77 (338)
                      ++++|+|||||||||||++++++|+++|  ++|++++|...... ...+... ...++++++.+|++|.+.+.+++++  
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~-~~~l~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~   98 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN-LNNVKSI-QDHPNYYFVKGEIQNGELLEHVIKERD   98 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC-GGGGTTT-TTCTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc-hhhhhhh-ccCCCeEEEEcCCCCHHHHHHHHhhcC
Confidence            3457899999999999999999999999  67877777542211 1111111 1125899999999999999999986  


Q ss_pred             ccEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           78 CTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      +|+|||+|+..... ........++.|+.++.++++++++.+ +++|||+||.++|+... ...+++|++         +
T Consensus        99 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~~v~~SS~~vy~~~~-~~~~~~E~~---------~  167 (346)
T 4egb_A           99 VQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYP-HIKLVQVSTDEVYGSLG-KTGRFTEET---------P  167 (346)
T ss_dssp             CCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHST-TSEEEEEEEGGGGCCCC-SSCCBCTTS---------C
T ss_pred             CCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeCchHHhCCCC-cCCCcCCCC---------C
Confidence            99999999976522 234455789999999999999999998 89999999999998322 356788887         4


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCCC-CCCCCC-CccccHHH
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEAH-YPIIKQ-GQFVHLDD  233 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~i~v~D  233 (338)
                      ..|.+.|+.+|.++|.+++.+++++|++++++||+++|||+.....  .+..++ ....+.... ++.+.. ++|+|++|
T Consensus       168 ~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  245 (346)
T 4egb_A          168 LAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEK--LIPLMVTNALEGKKLPLYGDGLNVRDWLHVTD  245 (346)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTS--HHHHHHHHHHTTCCCEEETTSCCEECEEEHHH
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccc--hHHHHHHHHHcCCCceeeCCCCeEEeeEEHHH
Confidence            5688899999999999999999988999999999999999865431  121112 222333332 333333 78999999


Q ss_pred             HHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh-cCCcccccHHH
Q 040253          234 LCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD-LGFKFKYSLDD  310 (338)
Q Consensus       234 ~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~  310 (338)
                      +|++++.+++++..+++||++ ++++|+.|+++.+.+.+|....... ....+.......+|++++++ |||+|++++++
T Consensus       246 va~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e  325 (346)
T 4egb_A          246 HCSAIDVVLHKGRVGEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKYTFEQ  325 (346)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCCCHHH
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCCCHHH
Confidence            999999999987777799985 5779999999999999885321121 12223344556789999986 99999999999


Q ss_pred             HHHHHHHHHHHcC
Q 040253          311 MFTGAVDTCRAKG  323 (338)
Q Consensus       311 ~i~~~~~~~~~~~  323 (338)
                      +|+++++|+++++
T Consensus       326 ~l~~~~~~~~~~~  338 (346)
T 4egb_A          326 GLQETVQWYEKNE  338 (346)
T ss_dssp             HHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999998764

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=100.00  E-value=1.4e-46  Score=331.81  Aligned_cols=293  Identities=18%  Similarity=0.202  Sum_probs=228.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|||||||||||++++++|+++|++|++++|++.......        ..+++++.+|+.|.+ +.+++++ |+|||+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A   70 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV--------NPSAELHVRDLKDYS-WGAGIKG-DVVFHFA   70 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS--------CTTSEEECCCTTSTT-TTTTCCC-SEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc--------CCCceEEECccccHH-HHhhcCC-CEEEECC
Confidence            58999999999999999999999999999999765432211        157899999999999 8888888 9999999


Q ss_pred             ccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHH
Q 040253           86 TPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        86 ~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      +... ..........++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|+.         +..|.+.|+
T Consensus        71 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~vyg--~~~~~~~~e~~---------~~~p~~~Y~  138 (312)
T 3ko8_A           71 ANPEVRLSTTEPIVHFNENVVATFNVLEWARQTG-VRTVVFASSSTVYG--DADVIPTPEEE---------PYKPISVYG  138 (312)
T ss_dssp             SSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGC--SCSSSSBCTTS---------CCCCCSHHH
T ss_pred             CCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeCcHHHhC--CCCCCCCCCCC---------CCCCCChHH
Confidence            9643 22233445788999999999999999988 88999999999998  44556788876         456788999


Q ss_pred             HHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC--CCCCCCCC-CccccHHHHHHHHHHh
Q 040253          165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE--AHYPIIKQ-GQFVHLDDLCSAHIFL  241 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~i~v~D~a~~~~~~  241 (338)
                      .+|.++|.+++.+++++|++++++||+++|||+........+..  ....+..  ..++.+.. ++++|++|+|++++.+
T Consensus       139 ~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~  216 (312)
T 3ko8_A          139 AAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRHGVIYDFIM--KLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAA  216 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCSSHHHHHHH--HHHHCTTEEEEC----CEECEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCCChHHHHHH--HHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHH
Confidence            99999999999999989999999999999999865432211111  1112222  13333333 7899999999999999


Q ss_pred             hcC----CCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-C------Cccccccccccchhhhhh-cCCcccccH
Q 040253          242 FEH----PNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEF-E------DVDENMKNMLFSSKKLTD-LGFKFKYSL  308 (338)
Q Consensus       242 l~~----~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~-lg~~~~~~~  308 (338)
                      +++    ...+++||++ ++++|+.|+++.+.+.+|... +... +      .++.......+|++++++ |||+|++++
T Consensus       217 ~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~  295 (312)
T 3ko8_A          217 WKKFEEMDAPFLALNVGNVDAVRVLDIAQIVAEVLGLRP-EIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTS  295 (312)
T ss_dssp             HHHHHHSCCSEEEEEESCSSCEEHHHHHHHHHHHHTCCC-EEEEC----------CCCSEECBCCHHHHHHHCCCCSSCH
T ss_pred             HHhccccCCCCcEEEEcCCCceeHHHHHHHHHHHhCCCC-ceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCH
Confidence            987    3446689985 688999999999999987422 1111 1      123445567899999966 999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 040253          309 DDMFTGAVDTCRAKG  323 (338)
Q Consensus       309 ~~~i~~~~~~~~~~~  323 (338)
                      +++|+++++|+++++
T Consensus       296 ~~~l~~~~~~~~~~~  310 (312)
T 3ko8_A          296 AEAVKKTAEDLAKEL  310 (312)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999999875

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=100.00  E-value=4.6e-46  Score=332.55  Aligned_cols=308  Identities=19%  Similarity=0.240  Sum_probs=235.4

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC--Cc
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR--GC   78 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~   78 (338)
                      ++++|+||||||+||||++++++|+++|++|++++|+....... ..+....  ..+++++.+|++|++++.++++  ++
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKIT--GKTPAFHETDVSDERALARIFDAHPI   79 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHH--SCCCEEECCCTTCHHHHHHHHHHSCC
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhc--CCCceEEEeecCCHHHHHHHHhccCC
Confidence            34578999999999999999999999999999999976543322 1111100  1478999999999999999998  89


Q ss_pred             cEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           79 TGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        79 d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      |+|||+|+..... ......+.++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|+.         +.
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g--~~~~~~~~e~~---------~~  147 (341)
T 3enk_A           80 TAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERA-VKRIVFSSSATVYG--VPERSPIDETF---------PL  147 (341)
T ss_dssp             CEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGBC--SCSSSSBCTTS---------CC
T ss_pred             cEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEecceEec--CCCCCCCCCCC---------CC
Confidence            9999999865411 112234778999999999999999988 88999999999997  45566788887         44


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHcC-ccEEEEcCCceeCCCCCCCC-------ChhHH-HhhhhcccCCCC---CC----
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEENN-IDFISIIPSLVVGPFLTSSM-------PPSLI-TALSPITRNEAH---YP----  221 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~~-------~~~~~-~~~~~~~~~~~~---~~----  221 (338)
                      .|.+.|+.+|.++|.+++.++.+++ ++++++||+++|||+.....       ...+. .......+....   ++    
T Consensus       148 ~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (341)
T 3enk_A          148 SATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYP  227 (341)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSS
T ss_pred             CCCChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccC
Confidence            5788999999999999999998886 99999999999999653211       11121 111212222111   11    


Q ss_pred             --CCCC-CccccHHHHHHHHHHhhcC---CCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccc
Q 040253          222 --IIKQ-GQFVHLDDLCSAHIFLFEH---PNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFS  293 (338)
Q Consensus       222 --~~~~-~~~i~v~D~a~~~~~~l~~---~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~  293 (338)
                        .+.+ ++|+|++|+|++++.++++   ...+++||+ +++++|+.|+++.+.+.+|. +.+.. ....+........|
T Consensus       228 ~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d  306 (341)
T 3enk_A          228 TPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTGRGYSVLEVVRAFEKASGR-AVPYELVARRPGDVAECYAN  306 (341)
T ss_dssp             STTSSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCSCCEEHHHHHHHHHHHHCS-CCCEEEECCCTTCCSEECBC
T ss_pred             CCCCCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCCCceeHHHHHHHHHHHhCC-CcceeeCCCCCCCccccccC
Confidence              3333 7899999999999999986   245678998 56889999999999999875 33322 22234455567789


Q ss_pred             hhhhhh-cCCcccccHHHHHHHHHHHHHHcCC
Q 040253          294 SKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGL  324 (338)
Q Consensus       294 ~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~  324 (338)
                      ++++++ |||+|+++++++|+++++|++++..
T Consensus       307 ~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~  338 (341)
T 3enk_A          307 PAAAAETIGWKAERDLERMCADHWRWQENNPR  338 (341)
T ss_dssp             CHHHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence            999986 9999999999999999999998753

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=100.00  E-value=3e-45  Score=328.12  Aligned_cols=292  Identities=20%  Similarity=0.250  Sum_probs=231.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+|||||||||||++++++|+++|++|++++|++..              .+++++.+|++|.+++.++++++|+|||
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--------------~~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG--------------TGGEEVVGSLEDGQALSDAIMGVSAVLH   83 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS--------------SCCSEEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC--------------CCccEEecCcCCHHHHHHHHhCCCEEEE
Confidence            36899999999999999999999999999999998654              3678999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      +|+........ ....++.|+.++.++++++++.+ +++|||+||.++|+.......+++|++         +..|.+.|
T Consensus        84 ~A~~~~~~~~~-~~~~~~~nv~~~~~ll~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~~~E~~---------~~~~~~~Y  152 (347)
T 4id9_A           84 LGAFMSWAPAD-RDRMFAVNVEGTRRLLDAASAAG-VRRFVFASSGEVYPENRPEFLPVTEDH---------PLCPNSPY  152 (347)
T ss_dssp             CCCCCCSSGGG-HHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGTTTTSCSSSSBCTTS---------CCCCCSHH
T ss_pred             CCcccCcchhh-HHHHHHHHHHHHHHHHHHHHHcC-CCeEEEECCHHHhCCCCCCCCCcCCCC---------CCCCCChH
Confidence            99976543222 25789999999999999999988 899999999999984335566788887         45678899


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCcee-------------CCCCCCC---------CChhHHHhh-hhcccCCC-C
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVV-------------GPFLTSS---------MPPSLITAL-SPITRNEA-H  219 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~-------------G~~~~~~---------~~~~~~~~~-~~~~~~~~-~  219 (338)
                      +.+|.++|.+++.++++++++++++||+++|             ||+....         ....+..++ ....+.+. .
T Consensus       153 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (347)
T 4id9_A          153 GLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHI  232 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEE
Confidence            9999999999999999999999999999999             7653211         011122222 22233332 2


Q ss_pred             CCCCC-CCcc----ccHHHHHHHHHHhhcCC-CCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCcccccccccc
Q 040253          220 YPIIK-QGQF----VHLDDLCSAHIFLFEHP-NAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLF  292 (338)
Q Consensus       220 ~~~~~-~~~~----i~v~D~a~~~~~~l~~~-~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  292 (338)
                      ++.+. .++|    +|++|+|++++.+++++ ..+++||+ +++++|+.|+++.+.+.+|.. .+.  ...+.......+
T Consensus       233 ~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~--~~~p~~~~~~~~  309 (347)
T 4id9_A          233 LARNENGRPFRMHITDTRDMVAGILLALDHPEAAGGTFNLGADEPADFAALLPKIAALTGLP-IVT--VDFPGDGVYYHT  309 (347)
T ss_dssp             EEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTEEEEESCSSCEEHHHHHHHHHHHHCCC-EEE--EECSSCCCBCCB
T ss_pred             eCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCCCeEEECCCCcccHHHHHHHHHHHhCCC-Cce--eeCCCccccccc
Confidence            32332 2678    99999999999999987 45678998 568899999999999998752 221  112223336778


Q ss_pred             chhhhhh-cCCcccccHHHHHHHHHHHHHHcC
Q 040253          293 SSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       293 ~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      |++++++ |||+|+++++++|+++++|++++.
T Consensus       310 d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~  341 (347)
T 4id9_A          310 SNERIRNTLGFEAEWTMDRMLEEAATARRQRL  341 (347)
T ss_dssp             CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence            9999987 999999999999999999998764

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=100.00  E-value=1.8e-44  Score=320.81  Aligned_cols=298  Identities=16%  Similarity=0.269  Sum_probs=228.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      ||+||||||+||||++++++|+++|++|++++|+......     .+.   .+++++.+|++|.+++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED-----AIT---EGAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG-----GSC---TTSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh-----hcC---CCcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            4799999999999999999999999999999997543221     111   368899999999999999998  899999


Q ss_pred             EecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+..... ........++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|++         +..|.+
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~--~~~~~~~~E~~---------~~~~~~  140 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VDKFIFSSTAATYG--EVDVDLITEET---------MTNPTN  140 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGGC--SCSSSSBCTTS---------CCCCSS
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcC-CCEEEEeCCceeeC--CCCCCCCCcCC---------CCCCCC
Confidence            999965421 112345788999999999999999988 89999999999997  44456788887         445778


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC-------ChhHHHhhhhcccCCC---CC------CCCCC
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM-------PPSLITALSPITRNEA---HY------PIIKQ  225 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~---~~------~~~~~  225 (338)
                      .|+.+|.++|.+++.+++++|++++++||+++|||+..+..       ...+........+...   .+      +.+..
T Consensus       141 ~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~  220 (330)
T 2c20_A          141 TYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTC  220 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCce
Confidence            99999999999999999888999999999999999743211       1122222221222211   11      12322


Q ss_pred             -CccccHHHHHHHHHHhhcCCC---CCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhhhh
Q 040253          226 -GQFVHLDDLCSAHIFLFEHPN---AKGRYICS-SHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKLTD  299 (338)
Q Consensus       226 -~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  299 (338)
                       ++|+|++|+|++++.+++++.   .+++||++ ++++|+.|+++.+.+.+|. +.+... ...+.......+|++++++
T Consensus       221 ~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~  299 (330)
T 2c20_A          221 IRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREVTNH-EIPAEVAPRRAGDPARLVASSQKAKE  299 (330)
T ss_dssp             EECEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHHTTS-CCCEEEECCCSSCCSEECBCCHHHHH
T ss_pred             eEeeEeHHHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHHhCC-CCceeeCCCCCCcccccccCHHHHHH
Confidence             689999999999999997643   25689984 6889999999999999874 333221 2223334567789999986


Q ss_pred             -cCCcccc-cHHHHHHHHHHHHHHcC
Q 040253          300 -LGFKFKY-SLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       300 -lg~~~~~-~~~~~i~~~~~~~~~~~  323 (338)
                       |||+|++ +++++|+++++|++++.
T Consensus       300 ~lG~~p~~~~l~~~l~~~~~~~~~~~  325 (330)
T 2c20_A          300 KLGWDPRYVNVKTIIEHAWNWHQKQP  325 (330)
T ss_dssp             HHCCCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             HhCCCCccCCHHHHHHHHHHHHHHhh
Confidence             9999999 89999999999998753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=100.00  E-value=3.4e-44  Score=321.84  Aligned_cols=307  Identities=17%  Similarity=0.155  Sum_probs=231.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCC--CCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPK--ASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      .+|+||||||+||||++++++|+++|++|++++|+... ...+..+.....  ..++++++.+|++|.+++.++++++|+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  105 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY  105 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence            46899999999999999999999999999999997642 222222111000  014789999999999999999999999


Q ss_pred             EEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           81 VFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        81 vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      |||+|+..... ........++.|+.++.++++++.+.+ +++|||+||.++|+  .....+++|++         +..|
T Consensus       106 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~--~~~~~~~~E~~---------~~~~  173 (352)
T 1sb8_A          106 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQSFTYAASSSTYG--DHPGLPKVEDT---------IGKP  173 (352)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGT--TCCCSSBCTTC---------CCCC
T ss_pred             EEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHhcC--CCCCCCCCCCC---------CCCC
Confidence            99999964311 112344778999999999999999988 89999999999997  33445778887         4457


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC--ChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM--PPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDL  234 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~  234 (338)
                      .+.|+.+|.++|.+++.+++++|++++++||+.+|||+.....  ...+..++ ....+.+. .++.+.. ++|+|++|+
T Consensus       174 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dv  253 (352)
T 1sb8_A          174 LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT  253 (352)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHH
Confidence            8899999999999999998888999999999999999865431  11121111 11223332 2333333 689999999


Q ss_pred             HHHHHHhhcCC--CCCCceEE-ecCCCCHHHHHHHHHHhC---CCCCC--CCCCCCccccccccccchhhhhh-cCCccc
Q 040253          235 CSAHIFLFEHP--NAKGRYIC-SSHPATILELAKFLREKY---PEFNV--PTEFEDVDENMKNMLFSSKKLTD-LGFKFK  305 (338)
Q Consensus       235 a~~~~~~l~~~--~~~~~~~~-~~~~~t~~e~~~~i~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-lg~~~~  305 (338)
                      |++++.++...  ..+++||+ +++++|+.|+++.+.+.+   |....  +......+.......+|++++++ |||+|+
T Consensus       254 a~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~  333 (352)
T 1sb8_A          254 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPK  333 (352)
T ss_dssp             HHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCC
T ss_pred             HHHHHHHHhccccCCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecCCCccchhhccCCHHHHHHHhCCCCC
Confidence            99999998762  34668998 468899999999999998   64211  11111122334556789999987 999999


Q ss_pred             ccHHHHHHHHHHHHHHc
Q 040253          306 YSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       306 ~~~~~~i~~~~~~~~~~  322 (338)
                      ++++++|+++++|++++
T Consensus       334 ~~~~e~l~~~~~~~~~~  350 (352)
T 1sb8_A          334 YDVSAGVALAMPWYIMF  350 (352)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999864

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=100.00  E-value=3.2e-45  Score=330.99  Aligned_cols=304  Identities=19%  Similarity=0.284  Sum_probs=229.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccC-CCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA-EEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-d~~~~~~~~~~~d~v   81 (338)
                      +||+|||||||||||++|+++|+++ |++|++++|+......+..       .++++++.+|++ |.+.+.++++++|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-------~~~v~~~~~Dl~~d~~~~~~~~~~~d~V   95 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK-------HERMHFFEGDITINKEWVEYHVKKCDVI   95 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG-------STTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc-------CCCeEEEeCccCCCHHHHHHHhccCCEE
Confidence            4689999999999999999999998 9999999998765433211       158999999999 899999999999999


Q ss_pred             EEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      ||+|+..... ......+.++.|+.++.+++++|++.+  ++|||+||.++|+  .....+++|+++...  ..+...|.
T Consensus        96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS~~vyg--~~~~~~~~e~~~~~~--~~p~~~p~  169 (372)
T 3slg_A           96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYG--MCADEQFDPDASALT--YGPINKPR  169 (372)
T ss_dssp             EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECCGGGGB--SCCCSSBCTTTCCEE--ECCTTCTT
T ss_pred             EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCcHHHhC--CCCCCCCCccccccc--cCCCCCCC
Confidence            9999965521 112334778999999999999999887  7999999999998  444566777763311  01122577


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC------ChhHHHhhh-hcccCCCCC-CCCCC-CccccH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM------PPSLITALS-PITRNEAHY-PIIKQ-GQFVHL  231 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~~-~~~~~~~~~-~~~~~-~~~i~v  231 (338)
                      +.|+.+|+++|.+++.++++ |++++++||+++|||+.....      ...+..++. ...+....+ +.+.. ++|+|+
T Consensus       170 ~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v  248 (372)
T 3slg_A          170 WIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYV  248 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEH
T ss_pred             CcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEH
Confidence            89999999999999999888 999999999999999865311      112222222 223443322 33333 689999


Q ss_pred             HHHHHHHHHhhcCCC---CCCceEEec--CCCCHHHHHHHHHHhCCCCCCCCCC-------C---------Ccccccccc
Q 040253          232 DDLCSAHIFLFEHPN---AKGRYICSS--HPATILELAKFLREKYPEFNVPTEF-------E---------DVDENMKNM  290 (338)
Q Consensus       232 ~D~a~~~~~~l~~~~---~~~~~~~~~--~~~t~~e~~~~i~~~~~~~~~~~~~-------~---------~~~~~~~~~  290 (338)
                      +|+|++++.+++++.   .+++||+++  +++|+.|+++.+.+.+|.. .+...       .         .........
T Consensus       249 ~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (372)
T 3slg_A          249 DDGISALMKIIENSNGVATGKIYNIGNPNNNFSVRELANKMLELAAEF-PEYADSAKRVKLVETTSGAYYGNGYQDVQNR  327 (372)
T ss_dssp             HHHHHHHHHHHHCGGGTTTTEEEEECCTTCEEEHHHHHHHHHHHHHHC-TTTHHHHHTCCEEEC-------------CCC
T ss_pred             HHHHHHHHHHHhcccCcCCCceEEeCCCCCCccHHHHHHHHHHHhCCC-cccccccccceeeeccccccccCCcccccee
Confidence            999999999999874   467899865  5899999999999988642 11100       0         001234456


Q ss_pred             ccchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          291 LFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       291 ~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ..|++++++ |||+|+++++++|+++++|++++
T Consensus       328 ~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~  360 (372)
T 3slg_A          328 VPKIENTMQELGWAPQFTFDDALRQIFEAYRGH  360 (372)
T ss_dssp             CBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTC
T ss_pred             ecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence            788999987 99999999999999999999764

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=100.00  E-value=6.1e-44  Score=319.71  Aligned_cols=303  Identities=15%  Similarity=0.189  Sum_probs=228.3

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCC--cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPD--NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      |+. ||+||||||+||||++++++|+++  |++|++++|+..  ....+..+.     .++++++.+|++|.+++.++++
T Consensus         1 Ms~-m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~   74 (348)
T 1oc2_A            1 MSQ-FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL-----GDRVELVVGDIADAELVDKLAA   74 (348)
T ss_dssp             --C-CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC-----SSSEEEEECCTTCHHHHHHHHT
T ss_pred             CCc-CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhc-----cCCeEEEECCCCCHHHHHHHhh
Confidence            554 689999999999999999999998  899999999653  122111111     1578999999999999999999


Q ss_pred             CccEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCC----------CCCCcCCC
Q 040253           77 GCTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEH----------RKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~----------~~~~~~e~  145 (338)
                      ++|+|||+|+..... .....+..++.|+.++.++++++...+ + +|||+||.++|+....          ...+++|+
T Consensus        75 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~  152 (348)
T 1oc2_A           75 KADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD-I-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE  152 (348)
T ss_dssp             TCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT
T ss_pred             cCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEecccceeCCCcccccccccccccCCCcCCC
Confidence            999999999965411 112335788999999999999999988 6 9999999999973321          01466776


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCCC-CCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEAH-YPII  223 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~  223 (338)
                      +         +..|.+.|+.+|..+|.+++.+++++|++++++||+.+|||+....  ..+...+ ....+.... ++.+
T Consensus       153 ~---------~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  221 (348)
T 1oc2_A          153 T---------NYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE--KFIPRQITNILAGIKPKLYGEG  221 (348)
T ss_dssp             S---------CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT--SHHHHHHHHHHHTCCCEEETTS
T ss_pred             C---------CCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCcc--chHHHHHHHHHcCCCceEecCC
Confidence            6         4457789999999999999999988899999999999999986432  1111111 112233322 2333


Q ss_pred             CC-CccccHHHHHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh-
Q 040253          224 KQ-GQFVHLDDLCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD-  299 (338)
Q Consensus       224 ~~-~~~i~v~D~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-  299 (338)
                      .. ++++|++|+|++++.+++.+..+++||++ +.++|+.|+++.+.+.+|....... ....+.......+|++++++ 
T Consensus       222 ~~~~~~i~v~Dva~~~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~  301 (348)
T 1oc2_A          222 KNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDE  301 (348)
T ss_dssp             CCEEECEEHHHHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHH
T ss_pred             CceEeeEEHHHHHHHHHHHhhCCCCCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHH
Confidence            33 68999999999999999876566789985 5789999999999999885321111 11122233445689999987 


Q ss_pred             cCCccccc-HHHHHHHHHHHHHHc
Q 040253          300 LGFKFKYS-LDDMFTGAVDTCRAK  322 (338)
Q Consensus       300 lg~~~~~~-~~~~i~~~~~~~~~~  322 (338)
                      |||+|+++ ++++|+++++|++++
T Consensus       302 lG~~p~~~~~~~~l~~~~~~~~~~  325 (348)
T 1oc2_A          302 LGWTPQFTDFSEGLEETIQWYTDN  325 (348)
T ss_dssp             HCCCCSCCCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHHh
Confidence            99999998 999999999999875

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=100.00  E-value=2.9e-44  Score=323.48  Aligned_cols=301  Identities=15%  Similarity=0.137  Sum_probs=226.5

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHH--CCCeEEEEEcCCCcHHHHHHHh----cC-CCCCCcEEEEecccCCCCCchhh-
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLE--RGYAVRATVRDPDNKKKVKHLL----EL-PKASTHLTLWKADLAEEGNFDEP-   74 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~--~g~~V~~~~r~~~~~~~~~~~~----~~-~~~~~~~~~~~~Dl~d~~~~~~~-   74 (338)
                      ..+|+||||||+||||++++++|++  .|++|++++|+...........    .. .....+++++.+|++|++++.++ 
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   87 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLE   87 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHT
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhh
Confidence            3468999999999999999999999  8999999999765211100000    00 00114679999999999999998 


Q ss_pred             hCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhh
Q 040253           75 IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVR  154 (338)
Q Consensus        75 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~  154 (338)
                      ..++|+|||+|+..... .......+++|+.++.++++++++.+ ++ |||+||.++|+  .... +++|++        
T Consensus        88 ~~~~D~vih~A~~~~~~-~~~~~~~~~~Nv~gt~~ll~aa~~~~-~~-~V~~SS~~vyg--~~~~-~~~E~~--------  153 (362)
T 3sxp_A           88 KLHFDYLFHQAAVSDTT-MLNQELVMKTNYQAFLNLLEIARSKK-AK-VIYASSAGVYG--NTKA-PNVVGK--------  153 (362)
T ss_dssp             TSCCSEEEECCCCCGGG-CCCHHHHHHHHTHHHHHHHHHHHHTT-CE-EEEEEEGGGGC--SCCS-SBCTTS--------
T ss_pred             ccCCCEEEECCccCCcc-ccCHHHHHHHHHHHHHHHHHHHHHcC-Cc-EEEeCcHHHhC--CCCC-CCCCCC--------
Confidence            77999999999965542 34456889999999999999999988 66 99999999997  3333 788887        


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC--hhHHHhh-hhcccCCC-CCCCCCC-Cccc
Q 040253          155 SVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP--PSLITAL-SPITRNEA-HYPIIKQ-GQFV  229 (338)
Q Consensus       155 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~-~~~~~~~~-~~~~~~~-~~~i  229 (338)
                       +..|.+.|+.+|.++|.+++.++.+  ++++++||+++|||+......  ..+..+. ....+... .++.+.. ++|+
T Consensus       154 -~~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i  230 (362)
T 3sxp_A          154 -NESPENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFV  230 (362)
T ss_dssp             -CCCCSSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECE
T ss_pred             -CCCCCChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccE
Confidence             5568889999999999999987765  899999999999998653210  1122222 12223332 2333333 7899


Q ss_pred             cHHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCC-c-cccccccccchhhhhh-cCCccc
Q 040253          230 HLDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFED-V-DENMKNMLFSSKKLTD-LGFKFK  305 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-lg~~~~  305 (338)
                      |++|+|++++.+++.+..+ +||+ ++.++|+.|+++.+.+.+|  +.+..... . +.......+|++++++ |||+|+
T Consensus       231 ~v~Dva~ai~~~~~~~~~g-~~~i~~~~~~s~~e~~~~i~~~~g--~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~  307 (362)
T 3sxp_A          231 YIEDVIQANVKAMKAQKSG-VYNVGYSQARSYNEIVSILKEHLG--DFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPL  307 (362)
T ss_dssp             EHHHHHHHHHHHTTCSSCE-EEEESCSCEEEHHHHHHHHHHHHC--CCEEECCC-------CCCCBCCHHHHHHHCCCCC
T ss_pred             EHHHHHHHHHHHHhcCCCC-EEEeCCCCCccHHHHHHHHHHHcC--CCceEECCCCCcCcccceecCHHHHHHHhCCCCC
Confidence            9999999999999987654 9998 5688999999999999998  33222221 1 3445567889999966 999999


Q ss_pred             ccHHHHHHHHHHHHHHcC
Q 040253          306 YSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       306 ~~~~~~i~~~~~~~~~~~  323 (338)
                      ++++++|+++++|+++..
T Consensus       308 ~~l~e~l~~~~~~~~~~~  325 (362)
T 3sxp_A          308 YDLESGIKDYLPHIHAIF  325 (362)
T ss_dssp             CCHHHHHHHHHHHHTCC-
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999997653

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=100.00  E-value=1.4e-43  Score=320.81  Aligned_cols=304  Identities=16%  Similarity=0.103  Sum_probs=230.5

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ..+||+||||||+||||++++++|+++|++|++++|+........        ..+++++.+|++|.+++.++++++|+|
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------~~~v~~~~~Dl~d~~~~~~~~~~~d~V   97 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED--------MFCDEFHLVDLRVMENCLKVTEGVDHV   97 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG--------GTCSEEEECCTTSHHHHHHHHTTCSEE
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc--------cCCceEEECCCCCHHHHHHHhCCCCEE
Confidence            345789999999999999999999999999999999765432110        146899999999999999999999999


Q ss_pred             EEecccCCCCC--CCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCC---CCCCcCCCCCCchhhhhhc
Q 040253           82 FHLATPMDFES--KDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEH---RKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        82 i~~a~~~~~~~--~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~---~~~~~~e~~~~~~~~~~~~  156 (338)
                      ||+|+......  .......++.|+.++.++++++++.+ +++|||+||.++|+....   ...+++|+++.       +
T Consensus        98 ih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~-------~  169 (379)
T 2c5a_A           98 FNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYASSACIYPEFKQLETTNVSLKESDAW-------P  169 (379)
T ss_dssp             EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEEEGGGSCGGGSSSSSSCEECGGGGS-------S
T ss_pred             EECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEeehheeCCCCCCCccCCCcCcccCC-------C
Confidence            99999654210  23455789999999999999999988 889999999999974321   11345555411       2


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC--hhHHHhhh-hcccCC-C-CCCCCCC-Ccccc
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP--PSLITALS-PITRNE-A-HYPIIKQ-GQFVH  230 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~-~~~~~~-~-~~~~~~~-~~~i~  230 (338)
                      ..|.+.|+.+|..+|.+++.+++++|++++++||+++|||+......  ..+..++. ...+.. . .++.+.. ++++|
T Consensus       170 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~  249 (379)
T 2c5a_A          170 AEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTF  249 (379)
T ss_dssp             BCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEE
Confidence            34678999999999999999988889999999999999998654211  11211221 112332 1 2333333 78999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhh-cCCcccccH
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTD-LGFKFKYSL  308 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~  308 (338)
                      ++|+|++++.+++++ .+++||+ +++++|+.|+++.+.+.+|. +.+....+.+.......+|++++++ |||+|++++
T Consensus       250 v~Dva~ai~~~l~~~-~~~~~ni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~p~~~~~~~~~~d~~k~~~~lG~~p~~~l  327 (379)
T 2c5a_A          250 IDECVEGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEK-KLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRL  327 (379)
T ss_dssp             HHHHHHHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTC-CCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCH
T ss_pred             HHHHHHHHHHHhhcc-CCCeEEeCCCCccCHHHHHHHHHHHhCC-CCceeeCCCCCCcccccCCHHHHHHHhCCCCCCCH
Confidence            999999999999876 5678988 45889999999999999874 2222111111223445688899887 999999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 040253          309 DDMFTGAVDTCRAKG  323 (338)
Q Consensus       309 ~~~i~~~~~~~~~~~  323 (338)
                      +++|+++++|++++.
T Consensus       328 ~e~l~~~~~~~~~~~  342 (379)
T 2c5a_A          328 KEGLRITYFWIKEQI  342 (379)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhH
Confidence            999999999998653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=100.00  E-value=7.7e-44  Score=315.55  Aligned_cols=297  Identities=17%  Similarity=0.204  Sum_probs=227.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~v   81 (338)
                      .+|+||||||+||||++++++|+++|++|++++|++.. ..           .+++++.+|++|++++.+++++  +|+|
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-----------l~~~~~~~Dl~d~~~~~~~~~~~~~d~v   78 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-----------PNVEMISLDIMDSQRVKKVISDIKPDYI   78 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-----------TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-----------ceeeEEECCCCCHHHHHHHHHhcCCCEE
Confidence            46899999999999999999999999999999997654 11           1578999999999999998875  9999


Q ss_pred             EEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      ||+|+.... ...+.....+++|+.++.+++++++..+.+++|||+||.++|+.......+++|++         +..|.
T Consensus        79 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~---------~~~~~  149 (321)
T 2pk3_A           79 FHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEEN---------QLRPM  149 (321)
T ss_dssp             EECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTS---------CCBCC
T ss_pred             EEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCC---------CCCCC
Confidence            999997542 11234457899999999999999977522789999999999973211455778887         44577


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC-ChhHH-Hhhhhccc--CC-CCCCCCCC-CccccHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM-PPSLI-TALSPITR--NE-AHYPIIKQ-GQFVHLDDL  234 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~-~~~~~-~~~~~~~~--~~-~~~~~~~~-~~~i~v~D~  234 (338)
                      +.|+.+|.++|.+++.+++++|++++++||+++|||+..... ...+. .......+  .. ..++.+.. ++++|++|+
T Consensus       150 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dv  229 (321)
T 2pk3_A          150 SPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDI  229 (321)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHH
Confidence            899999999999999998888999999999999999865421 11111 11110012  12 12333322 679999999


Q ss_pred             HHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CC--Cccccccccccchhhhhh-cCCcccccHH
Q 040253          235 CSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE-FE--DVDENMKNMLFSSKKLTD-LGFKFKYSLD  309 (338)
Q Consensus       235 a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~-lg~~~~~~~~  309 (338)
                      |++++.+++.+..+++||++ +.++|+.|+++.+.+.+|. +.+.. .+  ..+.......+|++++++ |||+|+++++
T Consensus       230 a~a~~~~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~-~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~  308 (321)
T 2pk3_A          230 VQAYWLLSQYGKTGDVYNVCSGIGTRIQDVLDLLLAMANV-KIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLE  308 (321)
T ss_dssp             HHHHHHHHHHCCTTCEEEESCSCEEEHHHHHHHHHHHSSS-CCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHH
T ss_pred             HHHHHHHHhCCCCCCeEEeCCCCCeeHHHHHHHHHHHhCC-CCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHH
Confidence            99999999877567799985 5789999999999999875 22211 11  112334567789999987 8999999999


Q ss_pred             HHHHHHHHHHHHc
Q 040253          310 DMFTGAVDTCRAK  322 (338)
Q Consensus       310 ~~i~~~~~~~~~~  322 (338)
                      ++|+++++|++++
T Consensus       309 e~l~~~~~~~~~~  321 (321)
T 2pk3_A          309 KSLFEILQSYRQA  321 (321)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999753

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=100.00  E-value=1.1e-44  Score=319.59  Aligned_cols=294  Identities=15%  Similarity=0.170  Sum_probs=224.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      +|+||||||+||||++++++|+++  |++|++++|++......          ++++++.+|++|.+++.++++  ++|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~~~~d~   71 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVV----------NSGPFEVVNALDFNQIEHLVEVHKITD   71 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHH----------HSSCEEECCTTCHHHHHHHHHHTTCCE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccccc----------CCCceEEecCCCHHHHHHHHhhcCCCE
Confidence            579999999999999999999998  89999999976653211          256889999999999999998  8999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |||+|+.............++.|+.++.++++++++.+ +++|||+||.++|+... ...+.+|++         +..|.
T Consensus        72 vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~~~~~~~-~~~~~~e~~---------~~~~~  140 (312)
T 2yy7_A           72 IYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKK-IKKIFWPSSIAVFGPTT-PKENTPQYT---------IMEPS  140 (312)
T ss_dssp             EEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTS-CSEEECCEEGGGCCTTS-CSSSBCSSC---------BCCCC
T ss_pred             EEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcC-CCEEEEeccHHHhCCCC-CCCCccccC---------cCCCC
Confidence            99999864421122345789999999999999999988 88999999999997322 234566665         44578


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC--h-hHHHhhhhcc-cCCCCCCCC-CCCccccHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP--P-SLITALSPIT-RNEAHYPII-KQGQFVHLDDLC  235 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~-~~~~~~~~~~-~~~~~~~~~-~~~~~i~v~D~a  235 (338)
                      +.|+.+|.++|.+++.+++++|++++++||+++|||...+...  . ....+..... +....+..+ ..++|+|++|+|
T Consensus       141 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva  220 (312)
T 2yy7_A          141 TVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAI  220 (312)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHH
Confidence            8999999999999999988889999999999999986533211  1 1111122122 222223333 337899999999


Q ss_pred             HHHHHhhcCCCC----CCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCcccc---ccccccchhhhhh-cCCccccc
Q 040253          236 SAHIFLFEHPNA----KGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDEN---MKNMLFSSKKLTD-LGFKFKYS  307 (338)
Q Consensus       236 ~~~~~~l~~~~~----~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-lg~~~~~~  307 (338)
                      ++++.+++++..    +++||++++.+|+.|+++.+.+.+|...++.... ....   .....+|++++++ |||+|+++
T Consensus       221 ~a~~~~~~~~~~~~~~~~~~ni~~~~~s~~e~~~~i~~~~~~~~i~~~~~-~~~~~~~~~~~~~d~~k~~~~lG~~p~~~  299 (312)
T 2yy7_A          221 DATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPD-FRQKIADSWPASIDDSQAREDWDWKHTFD  299 (312)
T ss_dssp             HHHHHHHHSCGGGCCCSSCEECCSEEECHHHHHHHHHTTCTTCEEEECCC-THHHHHTTSCSSBCCHHHHHHHCCCCCCC
T ss_pred             HHHHHHHhCcccccccCceEEeCCCccCHHHHHHHHHHHCCCCceEeccC-ccccccccccccCCHHHHHHHcCCCCCCC
Confidence            999999987653    3789997788999999999999988432222111 1111   1124678999987 99999999


Q ss_pred             HHHHHHHHHHHHH
Q 040253          308 LDDMFTGAVDTCR  320 (338)
Q Consensus       308 ~~~~i~~~~~~~~  320 (338)
                      ++++|+++++|++
T Consensus       300 l~~~l~~~~~~~k  312 (312)
T 2yy7_A          300 LESMTKDMIEHLS  312 (312)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999974

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.2e-43  Score=315.26  Aligned_cols=295  Identities=18%  Similarity=0.258  Sum_probs=222.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|+||||||+||||++++++|+++|++|++++|++.....+..        .+++++.+|++|.+++.++++++|+|||+
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~--------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   84 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAY--------LEPECRVAEMLDHAGLERALRGLDGVIFS   84 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGG--------GCCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhcc--------CCeEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            4699999999999999999999999999999998765433211        36899999999999999999999999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC----C
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT----G  160 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p----~  160 (338)
                      |+..... .......++.|+.++.++++++.+.+ +++|||+||.++|+.......+ +|++         +..|    .
T Consensus        85 a~~~~~~-~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~~~~~~-~E~~---------~~~p~~~~~  152 (342)
T 2x4g_A           85 AGYYPSR-PRRWQEEVASALGQTNPFYAACLQAR-VPRILYVGSAYAMPRHPQGLPG-HEGL---------FYDSLPSGK  152 (342)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHT-CSCEEEECCGGGSCCCTTSSCB-CTTC---------CCSSCCTTS
T ss_pred             CccCcCC-CCCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEECCHHhhCcCCCCCCC-CCCC---------CCCcccccc
Confidence            9965432 23445789999999999999999988 8899999999999733221133 6776         3345    7


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCC-CCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFL-TSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHI  239 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  239 (338)
                      +.|+.+|.++|.+++.++++ |++++++||+.+|||+. .......+...   ..+....+ ....++++|++|+|++++
T Consensus       153 ~~Y~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~i~v~Dva~~~~  227 (342)
T 2x4g_A          153 SSYVLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPTTGRVITAI---GNGEMTHY-VAGQRNVIDAAEAGRGLL  227 (342)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCSTTHHHHHH---HTTCCCEE-ECCEEEEEEHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCccccHHHHHHHH---HcCCCccc-cCCCcceeeHHHHHHHHH
Confidence            89999999999999999887 99999999999999986 32222222211   12333222 223368999999999999


Q ss_pred             HhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCc-----------------------cc----ccccccc
Q 040253          240 FLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDV-----------------------DE----NMKNMLF  292 (338)
Q Consensus       240 ~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~-----------------------~~----~~~~~~~  292 (338)
                      .+++++..+++||+++..+|+.|+++.+.+.+|.. .+...+..                       +.    ......+
T Consensus       228 ~~~~~~~~g~~~~v~~~~~s~~e~~~~i~~~~g~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (342)
T 2x4g_A          228 MALERGRIGERYLLTGHNLEMADLTRRIAELLGQP-APQPMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFL  306 (342)
T ss_dssp             HHHHHSCTTCEEEECCEEEEHHHHHHHHHHHHTCC-CCEEECHHHHHHHHHHHHC----------------CCTTCCCCB
T ss_pred             HHHhCCCCCceEEEcCCcccHHHHHHHHHHHhCCC-CCCcCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCccc
Confidence            99987666778998543399999999999988742 22111100                       00    0134568


Q ss_pred             chhhhhh-cCC-cccccHHHHHHHHHHHHHHcCCCC
Q 040253          293 SSKKLTD-LGF-KFKYSLDDMFTGAVDTCRAKGLLP  326 (338)
Q Consensus       293 ~~~~~~~-lg~-~~~~~~~~~i~~~~~~~~~~~~~~  326 (338)
                      |++++++ ||| +| ++++++|+++++|++++|.++
T Consensus       307 d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g~~~  341 (342)
T 2x4g_A          307 DGRKAREELGFFST-TALDDTLLRAIDWFRDNGYFN  341 (342)
T ss_dssp             CCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTTCCC
T ss_pred             ChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcCCCC
Confidence            8999987 999 99 799999999999999999875

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=100.00  E-value=7.9e-44  Score=310.40  Aligned_cols=272  Identities=16%  Similarity=0.181  Sum_probs=216.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC-ccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG-CTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-~d~vi~   83 (338)
                      +|+||||| +||||++++++|+++|++|++++|+.+...            ++++++.+|++|.+++.+++++ +|+|||
T Consensus         3 ~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~Dl~d~~~~~~~~~~~~d~vih   69 (286)
T 3gpi_A            3 LSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPMP------------AGVQTLIADVTRPDTLASIVHLRPEILVY   69 (286)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCCC------------TTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCccccc------------cCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence            57999999 599999999999999999999999876521            5789999999999999999987 999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      +|+...    ......++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|++         +..|.+.|
T Consensus        70 ~a~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~-~~~~v~~SS~~vyg--~~~~~~~~E~~---------~~~p~~~Y  133 (286)
T 3gpi_A           70 CVAASE----YSDEHYRLSYVEGLRNTLSALEGAP-LQHVFFVSSTGVYG--QEVEEWLDEDT---------PPIAKDFS  133 (286)
T ss_dssp             CHHHHH----HC-----CCSHHHHHHHHHHTTTSC-CCEEEEEEEGGGCC--CCCSSEECTTS---------CCCCCSHH
T ss_pred             eCCCCC----CCHHHHHHHHHHHHHHHHHHHhhCC-CCEEEEEcccEEEc--CCCCCCCCCCC---------CCCCCChh
Confidence            998643    2234678899999999999999888 89999999999998  45566788887         55678899


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC-CccccHHHHHHHHHHhh
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ-GQFVHLDDLCSAHIFLF  242 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~~~~~l  242 (338)
                      +.+|.++|.+ +.+     ++++++||+++|||+..    ..+....    . ......+.. ++|+|++|+|++++.++
T Consensus       134 ~~sK~~~E~~-~~~-----~~~~ilR~~~v~G~~~~----~~~~~~~----~-~~~~~~~~~~~~~i~v~Dva~~~~~~~  198 (286)
T 3gpi_A          134 GKRMLEAEAL-LAA-----YSSTILRFSGIYGPGRL----RMIRQAQ----T-PEQWPARNAWTNRIHRDDGAAFIAYLI  198 (286)
T ss_dssp             HHHHHHHHHH-GGG-----SSEEEEEECEEEBTTBC----HHHHHTT----C-GGGSCSSBCEECEEEHHHHHHHHHHHH
T ss_pred             hHHHHHHHHH-Hhc-----CCeEEEecccccCCCch----hHHHHHH----h-cccCCCcCceeEEEEHHHHHHHHHHHH
Confidence            9999999998 543     99999999999999854    1212111    1 111222222 68999999999999999


Q ss_pred             cC---CCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcccc-cHHHHHHHHHH
Q 040253          243 EH---PNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKY-SLDDMFTGAVD  317 (338)
Q Consensus       243 ~~---~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~i~~~~~  317 (338)
                      ++   ...+++||++ ++++|+.|+++.+.+.+|. +.+.....  .......+|+++++.|||+|++ +++++|+++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~--~~~~~~~~d~~k~~~lG~~p~~~~l~e~l~~~~~  275 (286)
T 3gpi_A          199 QQRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGI-AYPAGATP--PVQGNKKLSNARLLASGYQLIYPDYVSGYGALLA  275 (286)
T ss_dssp             HHHTTSCCCSEEEECCSCCEEHHHHHHHHHHHTTC-CCCCSCCC--CBCSSCEECCHHHHHTTCCCSSCSHHHHHHHHHH
T ss_pred             hhhccCCCCceEEEeCCCCCCHHHHHHHHHHHcCC-CCCCCCCc--ccCCCeEeeHHHHHHcCCCCcCCcHHHHHHHHHH
Confidence            88   4567799985 5789999999999999985 33333222  4455677899999889999999 59999999999


Q ss_pred             HHHHcC
Q 040253          318 TCRAKG  323 (338)
Q Consensus       318 ~~~~~~  323 (338)
                      |+....
T Consensus       276 ~~~~~~  281 (286)
T 3gpi_A          276 AMREGH  281 (286)
T ss_dssp             HHTC--
T ss_pred             HHhccc
Confidence            997543

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.3e-43  Score=316.11  Aligned_cols=301  Identities=20%  Similarity=0.232  Sum_probs=226.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCC--cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPD--NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      +|+||||||+||||++++++|+++|  ++|++++|+..  ....+..+   . ..++++++.+|++|.+++.+++.++|+
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~   78 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDL---E-DDPRYTFVKGDVADYELVKELVRKVDG   78 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTT---T-TCTTEEEEECCTTCHHHHHHHHHTCSE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhh---c-cCCceEEEEcCCCCHHHHHHHhhCCCE
Confidence            4689999999999999999999986  89999999642  22222111   1 125789999999999999999999999


Q ss_pred             EEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           81 VFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        81 vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      |||+|+..... .......+++.|+.++.++++++...+..++|||+||.++|+  .....+++|++         +..|
T Consensus        79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg--~~~~~~~~E~~---------~~~~  147 (336)
T 2hun_A           79 VVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYG--DILKGSFTEND---------RLMP  147 (336)
T ss_dssp             EEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGC--CCSSSCBCTTB---------CCCC
T ss_pred             EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHC--CCCCCCcCCCC---------CCCC
Confidence            99999965411 112335789999999999999999876237999999999997  33345677776         4457


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDLCS  236 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~a~  236 (338)
                      .+.|+.+|.++|.+++.+++++|++++++||+++|||+.....  .+...+ ....+... .++.+.. ++++|++|+|+
T Consensus       148 ~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~  225 (336)
T 2hun_A          148 SSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEK--LIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVR  225 (336)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTS--HHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCc--hHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHH
Confidence            7899999999999999999989999999999999999864321  111111 11223332 2233333 68999999999


Q ss_pred             HHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh-cCCcccccHHHHHH
Q 040253          237 AHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFT  313 (338)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~  313 (338)
                      +++.+++....+++||++ +.++|+.|+++.+.+.+|....... ....+.......+|++++++ |||+|+++++++|+
T Consensus       226 ~~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~  305 (336)
T 2hun_A          226 AIELVLLKGESREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYTFDEGIK  305 (336)
T ss_dssp             HHHHHHHHCCTTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSCHHHHHH
T ss_pred             HHHHHHhCCCCCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCCHHHHHH
Confidence            999999876667789985 4679999999999999985321111 11122223345689999987 99999999999999


Q ss_pred             HHHHHHHHc
Q 040253          314 GAVDTCRAK  322 (338)
Q Consensus       314 ~~~~~~~~~  322 (338)
                      ++++|++++
T Consensus       306 ~~~~~~~~~  314 (336)
T 2hun_A          306 KTIDWYLKN  314 (336)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            999999875

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=100.00  E-value=1.9e-43  Score=319.76  Aligned_cols=301  Identities=17%  Similarity=0.164  Sum_probs=221.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +|+||||||+||||++++++|+++| ++|++++|+......  .+   . ..++++++.+|++|++++.++++++|+|||
T Consensus        32 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~l---~-~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih  105 (377)
T 2q1s_A           32 NTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI--NV---P-DHPAVRFSETSITDDALLASLQDEYDYVFH  105 (377)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG--GS---C-CCTTEEEECSCTTCHHHHHHCCSCCSEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh--hc---c-CCCceEEEECCCCCHHHHHHHhhCCCEEEE
Confidence            5799999999999999999999999 999999997654211  01   0 125789999999999999999999999999


Q ss_pred             ecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcC--CCCCCchhhhhhcc-C
Q 040253           84 LATPMDFE-SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYD--ETSWSDLDFVRSVK-M  158 (338)
Q Consensus        84 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~--e~~~~~~~~~~~~~-~  158 (338)
                      +|+..... ........++.|+.++.+++++|++. + +++|||+||.++|+  .....+++  |++|..      +. .
T Consensus       106 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~-~~~~V~~SS~~vyg--~~~~~~~~~~E~~~~~------~~~~  176 (377)
T 2q1s_A          106 LATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKR-LKKVVYSAAGCSIA--EKTFDDAKATEETDIV------SLHN  176 (377)
T ss_dssp             CCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSS-CCEEEEEEEC----------------CCCCCC------CSSC
T ss_pred             CCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEeCCHHHcC--CCCCCCcCcccccccc------cccC
Confidence            99965421 11234578899999999999999988 7 88999999999998  33344566  665310      22 4


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCC---------CCCC--ChhHHHhhh-hcccCCCC-CCCCCC
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFL---------TSSM--PPSLITALS-PITRNEAH-YPIIKQ  225 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~---------~~~~--~~~~~~~~~-~~~~~~~~-~~~~~~  225 (338)
                      |.+.|+.+|.++|.+++.+++++|++++++||+++|||+.         ....  ...+..++. ...+.+.. ++.+..
T Consensus       177 ~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~  256 (377)
T 2q1s_A          177 NDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVA  256 (377)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCe
Confidence            6789999999999999999888899999999999999986         2100  111211121 22333332 333333


Q ss_pred             -CccccHHHHHHH-HHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CCCcccccc-ccccchhhhhh-
Q 040253          226 -GQFVHLDDLCSA-HIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE-FEDVDENMK-NMLFSSKKLTD-  299 (338)
Q Consensus       226 -~~~i~v~D~a~~-~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~-  299 (338)
                       ++|+|++|+|++ ++.+++++..+ +||++ ++++|+.|+++.+.+.+|.. .+.. .+..+.... ...+|++++++ 
T Consensus       257 ~~~~i~v~Dva~a~i~~~~~~~~~g-~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~p~~~~~~~~~~~~d~~k~~~~  334 (377)
T 2q1s_A          257 TRDFIFVEDVANGLIACAADGTPGG-VYNIASGKETSIADLATKINEITGNN-TELDRLPKRPWDNSGKRFGSPEKARRE  334 (377)
T ss_dssp             EECCEEHHHHHHHHHHHHHHCCTTE-EEECCCCCCEEHHHHHHHHHHHHTCC-SCCCCCCCCGGGCC-CCCCCCHHHHHH
T ss_pred             EEeeEEHHHHHHHHHHHHHhcCCCC-eEEecCCCceeHHHHHHHHHHHhCCC-CCceeCCCCccccccccccCHHHHHHH
Confidence             789999999999 99999886644 99985 57899999999999998742 2222 222233444 67789999976 


Q ss_pred             cCCcccccHHHHHHHHHHHHHHc
Q 040253          300 LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       300 lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      |||+|+++++++|+++++|++++
T Consensus       335 lG~~p~~~l~e~l~~~~~~~~~~  357 (377)
T 2q1s_A          335 LGFSADVSIDDGLRKTIEWTKAN  357 (377)
T ss_dssp             HCCCCCCCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999864

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=100.00  E-value=1.5e-43  Score=318.24  Aligned_cols=304  Identities=16%  Similarity=0.141  Sum_probs=227.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi   82 (338)
                      +|+||||||+||||++++++|+++|++|++++|++.....+......   ..+++++.+|++|++++.+++++  +|+||
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   85 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEIVF   85 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCEEE
Confidence            58999999999999999999999999999999987654333222111   25789999999999999998875  89999


Q ss_pred             EecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+.... .........++.|+.++.++++++...+.+++|||+||.++|+.... ..+++|++         +..|.+
T Consensus        86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~~E~~---------~~~~~~  155 (357)
T 1rkx_A           86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW-IWGYRENE---------AMGGYD  155 (357)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS-SSCBCTTS---------CBCCSS
T ss_pred             ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCc-CCCCCCCC---------CCCCCC
Confidence            99985321 11123347889999999999999988654689999999999973211 23567765         445778


Q ss_pred             hHHHHHHHHHHHHHHHHHHc---------CccEEEEcCCceeCCCCCCCCChhHHHhhh-hcccCCCCCCCCCC-Ccccc
Q 040253          162 MYFVSKTLAEQAAWKFAEEN---------NIDFISIIPSLVVGPFLTSSMPPSLITALS-PITRNEAHYPIIKQ-GQFVH  230 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~---------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~i~  230 (338)
                      .|+.+|.++|.+++.+++++         |++++++||+.+|||+.... ...+..++. ...+....+..+.. ++|+|
T Consensus       156 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~  234 (357)
T 1rkx_A          156 PYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL-DRIVPDILRAFEQSQPVIIRNPHAIRPWQH  234 (357)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS-SCHHHHHHHHHHTTCCEECSCTTCEECCEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCcc-ccHHHHHHHHHhcCCCEEECCCCCeeccEe
Confidence            99999999999999998765         99999999999999986432 112222221 22344333333333 78999


Q ss_pred             HHHHHHHHHHhhcC-----CCCCCceEEec---CCCCHHHHHHHHHHhCCCCCCCCCCCC--ccccccccccchhhhhh-
Q 040253          231 LDDLCSAHIFLFEH-----PNAKGRYICSS---HPATILELAKFLREKYPEFNVPTEFED--VDENMKNMLFSSKKLTD-  299 (338)
Q Consensus       231 v~D~a~~~~~~l~~-----~~~~~~~~~~~---~~~t~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-  299 (338)
                      ++|+|++++.++++     ...+++||+++   +++|+.|+++.+.+.+|. +.+.....  .+.......+|++++++ 
T Consensus       235 v~Dva~a~~~~~~~~~~~~~~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~k~~~~  313 (357)
T 1rkx_A          235 VLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGE-GASWQLDGNAHPHEAHYLKLDCSKAKMQ  313 (357)
T ss_dssp             THHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCT-TCCEEC-------CCCCCCBCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcCCCCCceEEECCCCCCcccHHHHHHHHHHHhCC-CCccccCCCCCCcCcccccCCHHHHHHH
Confidence            99999999999874     23467899863   579999999999999874 22222211  12334556789999987 


Q ss_pred             cCCcccccHHHHHHHHHHHHHHcC
Q 040253          300 LGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       300 lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      |||+|+++++++|+++++|++++.
T Consensus       314 lG~~p~~~l~e~l~~~~~~~~~~~  337 (357)
T 1rkx_A          314 LGWHPRWNLNTTLEYIVGWHKNWL  337 (357)
T ss_dssp             HCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             hCCCcCCcHHHHHHHHHHHHHHHh
Confidence            999999999999999999998753

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=100.00  E-value=1.4e-43  Score=315.98  Aligned_cols=299  Identities=19%  Similarity=0.223  Sum_probs=227.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC---C---CeEEEEEcCCC--cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER---G---YAVRATVRDPD--NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~---g---~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      |+||||||+||||++++++|+++   |   ++|++++|+..  ....+..+.    ...+++++.+|++|++++.+++.+
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~   76 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD----ADPRLRFVHGDIRDAGLLARELRG   76 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGT----TCTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcc----cCCCeEEEEcCCCCHHHHHHHhcC
Confidence            58999999999999999999997   8   99999999653  222222111    125789999999999999999999


Q ss_pred             ccEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           78 CTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      +|+|||+|+..... ...+.+.+++.|+.++.++++++.+.+ +++|||+||.++|+.  ....+++|++         +
T Consensus        77 ~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~-~~~~v~~SS~~vyg~--~~~~~~~E~~---------~  144 (337)
T 1r6d_A           77 VDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-VGRVVHVSTNQVYGS--IDSGSWTESS---------P  144 (337)
T ss_dssp             CCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGCC--CSSSCBCTTS---------C
T ss_pred             CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEecchHHhCC--CCCCCCCCCC---------C
Confidence            99999999965411 112335789999999999999999988 889999999999973  3345677776         4


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCC-CCCCCCC-CccccHHH
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDD  233 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D  233 (338)
                      ..|.+.|+.+|.++|.+++.++++++++++++||+++|||+....  ..+...+ ....+... .++.+.+ ++++|++|
T Consensus       145 ~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  222 (337)
T 1r6d_A          145 LEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPE--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD  222 (337)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT--SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCC--ChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHH
Confidence            457789999999999999999988899999999999999986432  1111111 11223332 2233333 68999999


Q ss_pred             HHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh-cCCcccccHHH
Q 040253          234 LCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD-LGFKFKYSLDD  310 (338)
Q Consensus       234 ~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~  310 (338)
                      +|++++.+++++..+++||++ +.++|+.|+++.+.+.+|....... ....+.......+|++++++ |||+|++++++
T Consensus       223 va~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e  302 (337)
T 1r6d_A          223 HCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFAD  302 (337)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHH
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCCCHHH
Confidence            999999999876666799985 5779999999999999875211011 11112222345688999987 99999999999


Q ss_pred             HHHHHHHHHHHc
Q 040253          311 MFTGAVDTCRAK  322 (338)
Q Consensus       311 ~i~~~~~~~~~~  322 (338)
                      +|+++++|++++
T Consensus       303 ~l~~~~~~~~~~  314 (337)
T 1r6d_A          303 GLARTVRWYREN  314 (337)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999999865

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=100.00  E-value=3.4e-43  Score=313.27  Aligned_cols=302  Identities=16%  Similarity=0.155  Sum_probs=229.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH--HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--cc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK--KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d   79 (338)
                      ++|+||||||+||||++++++|+++|++|++++|++...  ..+..+.    ..++++++.+|++|.+++.+++++  +|
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   88 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG----IEGDIQYEDGDMADACSVQRAVIKAQPQ   88 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT----CGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc----ccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999999976542  1222211    115789999999999999998874  79


Q ss_pred             EEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCc-cEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           80 GVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTV-RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        80 ~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      +|||+|+..... ........++.|+.++.++++++.+.+ + ++|||+||.++|+  .....+++|++         +.
T Consensus        89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~SS~~v~g--~~~~~~~~E~~---------~~  156 (335)
T 1rpn_A           89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFS-PETRFYQASTSEMFG--LIQAERQDENT---------PF  156 (335)
T ss_dssp             EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTSEEEEEEEGGGGC--SCSSSSBCTTS---------CC
T ss_pred             EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeCHHHhC--CCCCCCCCccc---------CC
Confidence            999999965421 123345788999999999999999887 5 8999999999998  33445778887         44


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh-hHHHhh-hhcccCCC--CCCCCCC-CccccHH
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP-SLITAL-SPITRNEA--HYPIIKQ-GQFVHLD  232 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~-~~~i~v~  232 (338)
                      .|.+.|+.+|.++|.+++.++++++++++++||+++|||+....... .+...+ ....+...  .++.+.. ++|+|++
T Consensus       157 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~  236 (335)
T 1rpn_A          157 YPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAG  236 (335)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEeCCCcceeceEEHH
Confidence            57889999999999999999988899999999999999986543211 122222 12233322  2333333 7899999


Q ss_pred             HHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCC-CCCCCCC---ccccccccccchhhhhh-cCCcccc
Q 040253          233 DLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFN-VPTEFED---VDENMKNMLFSSKKLTD-LGFKFKY  306 (338)
Q Consensus       233 D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~-lg~~~~~  306 (338)
                      |+|++++.+++++. .++||+ +++++|+.|+++.+.+.+|... ....+..   .+........|++++++ |||+|++
T Consensus       237 Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~  315 (335)
T 1rpn_A          237 DYVEAMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRT  315 (335)
T ss_dssp             HHHHHHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHhcCC-CCEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCC
Confidence            99999999998765 579988 4577999999999999987521 0011111   12233456689999987 9999999


Q ss_pred             cHHHHHHHHHHHHHHc
Q 040253          307 SLDDMFTGAVDTCRAK  322 (338)
Q Consensus       307 ~~~~~i~~~~~~~~~~  322 (338)
                      +++++|+++++|++++
T Consensus       316 ~l~e~l~~~~~~~~~~  331 (335)
T 1rpn_A          316 SLDELIRMMVEADLRR  331 (335)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=100.00  E-value=4.4e-44  Score=316.95  Aligned_cols=291  Identities=16%  Similarity=0.142  Sum_probs=219.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc----HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN----KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      ++|+|||||||||||++++++|+++|++|++++|+...    ...+..+.    ..++++++.+|++          ++|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~----------~~d   71 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFL----EKPVLELEERDLS----------DVR   71 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEE----CSCGGGCCHHHHT----------TEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhc----cCCCeeEEeCccc----------cCC
Confidence            47899999999999999999999999999999997651    11110000    0123445555554          799


Q ss_pred             EEEEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           80 GVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        80 ~vi~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      +|||+|+.... .........++ |+.++.++++++++.+ +++|||+||.++|+  .....+++|++         +..
T Consensus        72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~-v~~~v~~SS~~v~~--~~~~~~~~E~~---------~~~  138 (321)
T 3vps_A           72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVG-VPKVVVGSTCEVYG--QADTLPTPEDS---------PLS  138 (321)
T ss_dssp             EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHT-CCEEEEEEEGGGGC--SCSSSSBCTTS---------CCC
T ss_pred             EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcC-CCeEEEecCHHHhC--CCCCCCCCCCC---------CCC
Confidence            99999987551 11122335667 9999999999999999 89999999999998  44566788887         455


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCc-cEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNI-DFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDL  234 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~  234 (338)
                      |.+.|+.+|+.+|.+++.+++++++ +++++||+++|||+.....  .+.... ....+... .++.+.. ++|+|++|+
T Consensus       139 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv  216 (321)
T 3vps_A          139 PRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDA--LVPRLCANLLTRNELPVEGDGEQRRDFTYITDV  216 (321)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTS--HHHHHHHHHHHHSEEEEETTSCCEECEEEHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCC--hHHHHHHHHHcCCCeEEeCCCCceEceEEHHHH
Confidence            7889999999999999999998999 9999999999999866521  111111 11223332 2333333 789999999


Q ss_pred             HHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhh-cCCcc-cccHHHH
Q 040253          235 CSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTD-LGFKF-KYSLDDM  311 (338)
Q Consensus       235 a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~~~-~~~~~~~  311 (338)
                      |++++.+++++..+ +||++ ++++|+.|+++.+. .+|........+..+........|++++++ |||+| +++++++
T Consensus       217 a~~~~~~~~~~~~g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~  294 (321)
T 3vps_A          217 VDKLVALANRPLPS-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEG  294 (321)
T ss_dssp             HHHHHHGGGSCCCS-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCCCHHHH
T ss_pred             HHHHHHHHhcCCCC-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcCCHHHH
Confidence            99999999988775 99985 68899999999999 887432111222334455677899999998 99999 8899999


Q ss_pred             HHHHHHHHHHcCCC
Q 040253          312 FTGAVDTCRAKGLL  325 (338)
Q Consensus       312 i~~~~~~~~~~~~~  325 (338)
                      |+++++|+++++..
T Consensus       295 l~~~~~~~~~~~~~  308 (321)
T 3vps_A          295 IRLTLEWWQSRDLD  308 (321)
T ss_dssp             HHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHhCCCc
Confidence            99999999988753

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=100.00  E-value=2.4e-43  Score=315.88  Aligned_cols=302  Identities=18%  Similarity=0.234  Sum_probs=226.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-------HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-------KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      +|+||||||+||||++++++|+++|++|++++|+...       ......+....  ..+++++.+|++|.+++.++++ 
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELT--GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhcc--CCceEEEECCCCCHHHHHHHHHh
Confidence            5899999999999999999999999999999986432       12222221100  1468999999999999999888 


Q ss_pred             -CccEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhh
Q 040253           77 -GCTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVR  154 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~  154 (338)
                       ++|+|||+|+..... ........++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|++        
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g--~~~~~~~~E~~--------  148 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-VKNLVFSSSATVYG--NPQYLPLDEAH--------  148 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGGC--SCSSSSBCTTS--------
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhC-CCEEEEECcHHHhC--CCCCCCcCCCC--------
Confidence             899999999965411 112334788999999999999999888 88999999999997  44456788886        


Q ss_pred             hccCC-CchHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCceeCCCCCCC--------CChhHHHhhhhcc--cCCC-CC
Q 040253          155 SVKMT-GWMYFVSKTLAEQAAWKFAEENN--IDFISIIPSLVVGPFLTSS--------MPPSLITALSPIT--RNEA-HY  220 (338)
Q Consensus       155 ~~~~p-~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~--~~~~-~~  220 (338)
                       +..| .+.|+.+|..+|.+++.++++ +  ++++++||+++|||+..+.        ....+........  +... .+
T Consensus       149 -~~~p~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (348)
T 1ek6_A          149 -PTGGCTNPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVF  226 (348)
T ss_dssp             -CCCCCSSHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEE
T ss_pred             -CCCCCCCchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEe
Confidence             3335 789999999999999999887 5  9999999999999953211        0112222222222  2211 11


Q ss_pred             C------CCCC-CccccHHHHHHHHHHhhcCC--CCC-CceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-CCcccccc
Q 040253          221 P------IIKQ-GQFVHLDDLCSAHIFLFEHP--NAK-GRYICS-SHPATILELAKFLREKYPEFNVPTEF-EDVDENMK  288 (338)
Q Consensus       221 ~------~~~~-~~~i~v~D~a~~~~~~l~~~--~~~-~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~  288 (338)
                      +      .+.. ++|+|++|+|++++.+++++  ..+ ++||++ ++++|+.|+++.+.+.+|. +++... ...+....
T Consensus       227 g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~  305 (348)
T 1ek6_A          227 GNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGK-KIPYKVVARREGDVA  305 (348)
T ss_dssp             CSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCS-CCCEEEECCCTTCCS
T ss_pred             CCcccCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCCCCCccHHHHHHHHHHHhCC-CCceeeCCCCCccch
Confidence            1      2222 68999999999999999864  234 589984 6789999999999999874 333221 12233345


Q ss_pred             ccccchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          289 NMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       289 ~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ...+|++++++ |||+|+++++++|+++++|++++
T Consensus       306 ~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~  340 (348)
T 1ek6_A          306 ACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQN  340 (348)
T ss_dssp             EECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             hhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            56789999976 99999999999999999999875

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=100.00  E-value=7.8e-44  Score=314.15  Aligned_cols=295  Identities=20%  Similarity=0.242  Sum_probs=224.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |+||||||+||||++++++|+++|++|++++|.......     ...   .+++++.+|++|++++.++++  ++|+|||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-----~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   72 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE-----NVP---KGVPFFRVDLRDKEGVERAFREFRPTHVSH   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG-----GSC---TTCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh-----hcc---cCeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            489999999999999999999999999999885432110     011   357889999999999998887  8999999


Q ss_pred             ecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc-eeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           84 LATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA-GTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        84 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~-~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      +|+..... ........+++|+.++.++++++++.+ +++|||+||. ++|+.. ....+++|++         +..|.+
T Consensus        73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS~~~~~g~~-~~~~~~~E~~---------~~~~~~  141 (311)
T 2p5y_A           73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG-VEKLVFASTGGAIYGEV-PEGERAEETW---------PPRPKS  141 (311)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEHHHHHCCC-CTTCCBCTTS---------CCCCCS
T ss_pred             CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEeCCChhhcCCC-CCCCCcCCCC---------CCCCCC
Confidence            99864411 112334688999999999999999888 8899999998 888721 2344677776         345778


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-hhHHHhhh-hcccCCC-CC-----CCCCC-CccccHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-PSLITALS-PITRNEA-HY-----PIIKQ-GQFVHLD  232 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~-~~~~~~~-~~-----~~~~~-~~~i~v~  232 (338)
                      .|+.+|.++|.+++.+++++|++++++||+++|||+...... ..+...+. ...+.+. .+     +.+.. ++|+|++
T Consensus       142 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~  221 (311)
T 2p5y_A          142 PYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVG  221 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHH
Confidence            999999999999999988889999999999999998654321 11111111 1123322 22     33333 6899999


Q ss_pred             HHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhhcCCcccccHHH
Q 040253          233 DLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTDLGFKFKYSLDD  310 (338)
Q Consensus       233 D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~  310 (338)
                      |+|++++.+++.+  +++||+ ++.++|++|+++.+.+.+|. +.+.. .+..+.......+|++++++|||+|++++++
T Consensus       222 Dva~a~~~~~~~~--~~~~~i~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~  298 (311)
T 2p5y_A          222 DVAEAHALALFSL--EGIYNVGTGEGHTTREVLMAVAEAAGK-APEVQPAPPRPGDLERSVLSPLKLMAHGWRPKVGFQE  298 (311)
T ss_dssp             HHHHHHHHHHHHC--CEEEEESCSCCEEHHHHHHHHHHHHTC-CCCEEEECCCTTCCSBCCBCCHHHHTTTCCCSSCHHH
T ss_pred             HHHHHHHHHHhCC--CCEEEeCCCCCccHHHHHHHHHHHhCC-CCCceeCCCCccchhhccCCHHHHHHCCCCCCCCHHH
Confidence            9999999999874  678998 46789999999999999874 22221 1222334456778999988899999999999


Q ss_pred             HHHHHHHHHHHc
Q 040253          311 MFTGAVDTCRAK  322 (338)
Q Consensus       311 ~i~~~~~~~~~~  322 (338)
                      +|+++++|++++
T Consensus       299 ~l~~~~~~~~~~  310 (311)
T 2p5y_A          299 GIRLTVDHFRGA  310 (311)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999999753

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=100.00  E-value=2.3e-42  Score=314.92  Aligned_cols=307  Identities=20%  Similarity=0.216  Sum_probs=227.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHH-HCCCeEEEEEcCCCc---------HHHHHH-HhcCCCC--CCc---EEEEecccCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDN---------KKKVKH-LLELPKA--STH---LTLWKADLAEE   68 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~---------~~~~~~-~~~~~~~--~~~---~~~~~~Dl~d~   68 (338)
                      +|+||||||+||||++++++|+ ++|++|++++|+...         ...+.. +......  ..+   ++++.+|++|+
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            4699999999999999999999 999999999997554         233321 1111110  124   89999999999


Q ss_pred             CCchhhhC--C-ccEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCC-----CC
Q 040253           69 GNFDEPIR--G-CTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEH-----RK  139 (338)
Q Consensus        69 ~~~~~~~~--~-~d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~-----~~  139 (338)
                      +.+.++++  + +|+|||+|+..... ........+++|+.++.++++++++.+ +++|||+||.++|+....     ..
T Consensus        82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~-~~~iv~~SS~~v~g~~~~~~~~~~~  160 (397)
T 1gy8_A           82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CDKIIFSSSAAIFGNPTMGSVSTNA  160 (397)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhC-CCEEEEECCHHHhCCCCcccccccc
Confidence            99988887  6 99999999965421 112345789999999999999999888 889999999999973221     14


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC-------CChhHHHhh--
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS-------MPPSLITAL--  210 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~--  210 (338)
                      .+++|++         +..|.+.|+.+|.++|.+++.+++++|++++++||+++|||+..+.       ....+..+.  
T Consensus       161 ~~~~E~~---------~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~  231 (397)
T 1gy8_A          161 EPIDINA---------KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGR  231 (397)
T ss_dssp             CCBCTTS---------CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHH
T ss_pred             cCcCccC---------CCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHH
Confidence            5677776         3457789999999999999999988899999999999999974321       111222111  


Q ss_pred             ---hhcccCC------------C-CCC------CCCC-CccccHHHHHHHHHHhhcCCCC------C---CceEE-ecCC
Q 040253          211 ---SPITRNE------------A-HYP------IIKQ-GQFVHLDDLCSAHIFLFEHPNA------K---GRYIC-SSHP  257 (338)
Q Consensus       211 ---~~~~~~~------------~-~~~------~~~~-~~~i~v~D~a~~~~~~l~~~~~------~---~~~~~-~~~~  257 (338)
                         ....+..            . .++      .+.. ++|||++|+|++++.+++++..      +   ++||+ ++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~~~  311 (397)
T 1gy8_A          232 VMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRG  311 (397)
T ss_dssp             HHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCC
T ss_pred             HHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccccccccccCCCcEEEeCCCCc
Confidence               2122221            1 111      2323 6899999999999999975321      2   68998 4678


Q ss_pred             CCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhhhh-cCCcccc-cHHHHHHHHHHHHHHc
Q 040253          258 ATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKLTD-LGFKFKY-SLDDMFTGAVDTCRAK  322 (338)
Q Consensus       258 ~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-lg~~~~~-~~~~~i~~~~~~~~~~  322 (338)
                      +|+.|+++.+.+.+|. +.+... ...+.......+|++++++ |||+|++ +++++|+++++|++++
T Consensus       312 ~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~  378 (397)
T 1gy8_A          312 YSVREVIEVARKTTGH-PIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH  378 (397)
T ss_dssp             EEHHHHHHHHHHHHCC-CCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHhCC-CCCeeeCCCCCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhc
Confidence            9999999999999874 333221 1123334567789999976 9999999 8999999999999876

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=100.00  E-value=2.8e-43  Score=311.16  Aligned_cols=293  Identities=15%  Similarity=0.112  Sum_probs=222.4

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccE
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTG   80 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~   80 (338)
                      .++|+|||||||||||++++++|+++|+      +.....             .+++.+.+|++|++.+.+++++  +|+
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~~-------------~~~~~~~~D~~d~~~~~~~~~~~~~d~   64 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPGEDW-------------VFVSSKDADLTDTAQTRALFEKVQPTH   64 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCEE-------------EECCTTTCCTTSHHHHHHHHHHSCCSE
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC------cccccc-------------cccCceecccCCHHHHHHHHhhcCCCE
Confidence            4578999999999999999999999998      111110             2455668999999999999985  999


Q ss_pred             EEEecccCCC--CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           81 VFHLATPMDF--ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        81 vi~~a~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      |||+|+....  .........++.|+.++.+++++|++.+ +++|||+||.++|+  .....+++|+++..     .+..
T Consensus        65 Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~-~~~~v~~SS~~vyg--~~~~~~~~E~~~~~-----~~~~  136 (319)
T 4b8w_A           65 VIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVG-ARKVVSCLSTCIFP--DKTTYPIDETMIHN-----GPPH  136 (319)
T ss_dssp             EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEECCGGGSC--SSCCSSBCGGGGGB-----SCCC
T ss_pred             EEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEcchhhcC--CCCCCCcccccccc-----CCCC
Confidence            9999997541  1223445789999999999999999998 89999999999998  45566777775211     1223


Q ss_pred             CCc-hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC--hhHHHhhh-----hcccCCC-CCCCCCC-Ccc
Q 040253          159 TGW-MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP--PSLITALS-----PITRNEA-HYPIIKQ-GQF  228 (338)
Q Consensus       159 p~~-~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~-----~~~~~~~-~~~~~~~-~~~  228 (338)
                      |.+ .|+.+|+++|++++.++++++++++++||+++|||+......  ..+..++.     ...+... .++.+.. ++|
T Consensus       137 p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  216 (319)
T 4b8w_A          137 NSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQF  216 (319)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEeCCCCeeEEE
Confidence            444 699999999999999999899999999999999998754211  11111111     1233333 2334433 789


Q ss_pred             ccHHHHHHHHHHhhcCCCC--CCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhhhh-cCCc
Q 040253          229 VHLDDLCSAHIFLFEHPNA--KGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKLTD-LGFK  303 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~~--~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-lg~~  303 (338)
                      +|++|+|++++.+++++..  +++||+ +++++|+.|+++.+.+.+|. +.+... ...+........|++++++ |||.
T Consensus       217 i~v~Dva~a~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~  295 (319)
T 4b8w_A          217 IYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDF-HGEVTFDTTKSDGQFKKTASNSKLRTYLPDF  295 (319)
T ss_dssp             EEHHHHHHHHHHHHHHCCCSSCEEECCCGGGCEEHHHHHHHHHHHTTC-CSCEEEETTSCCCCSCCCBCCHHHHHHCTTC
T ss_pred             EeHHHHHHHHHHHHhccccCCceEEEecCCCceeHHHHHHHHHHHhCC-CCcEEeCCCCCcCcccccCCHHHHHHhcCCC
Confidence            9999999999999987443  447887 56899999999999999984 222222 2223344556799999998 9999


Q ss_pred             ccccHHHHHHHHHHHHHHcC
Q 040253          304 FKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       304 ~~~~~~~~i~~~~~~~~~~~  323 (338)
                      |.++++++|+++++|++++.
T Consensus       296 p~~~~~~~l~~~~~~~~~~~  315 (319)
T 4b8w_A          296 RFTPFKQAVKETCAWFTDNY  315 (319)
T ss_dssp             CCCCHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999764

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=100.00  E-value=7.4e-42  Score=305.57  Aligned_cols=300  Identities=17%  Similarity=0.231  Sum_probs=222.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+|+||||||+||||++++++|+++|++|++++|+..... .+..+.    ...+++++.+|+.+..     +.++|+||
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~-----~~~~d~vi   96 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI----GHENFELINHDVVEPL-----YIEVDQIY   96 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGT----TCTTEEEEECCTTSCC-----CCCCSEEE
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhc----cCCceEEEeCccCChh-----hcCCCEEE
Confidence            4689999999999999999999999999999999754321 111111    1257899999998753     56899999


Q ss_pred             EecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+..... ........++.|+.++.++++++++.+ + +|||+||.++|+  .....+++|+.|....    +..|.+
T Consensus        97 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~g--~~~~~~~~E~~~~~~~----~~~~~~  168 (343)
T 2b69_A           97 HLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG-A-RLLLASTSEVYG--DPEVHPQSEDYWGHVN----PIGPRA  168 (343)
T ss_dssp             ECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-C-EEEEEEEGGGGB--SCSSSSBCTTCCCBCC----SSSTTH
T ss_pred             ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhC-C-cEEEECcHHHhC--CCCCCCCcccccccCC----CCCCCC
Confidence            999965421 123345778999999999999999888 5 899999999997  3344567777543211    334678


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDLCSAH  238 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~  238 (338)
                      .|+.+|.++|.+++.++++++++++++||+++|||+........+...+ ....+... .++.+.. ++++|++|+|+++
T Consensus       169 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~  248 (343)
T 2b69_A          169 CYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL  248 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHH
Confidence            9999999999999999888899999999999999986432111221111 12223332 2333333 6899999999999


Q ss_pred             HHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh-cCCcccccHHHHHHHH
Q 040253          239 IFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGA  315 (338)
Q Consensus       239 ~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~  315 (338)
                      +.+++.+ .+++||++ ++++|+.|+++.+.+.+|.. .+.. .+...........|++++++ |||+|+++++++|+++
T Consensus       249 ~~~~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~p~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~  326 (343)
T 2b69_A          249 VALMNSN-VSSPVNLGNPEEHTILEFAQLIKNLVGSG-SEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKA  326 (343)
T ss_dssp             HHHHTSS-CCSCEEESCCCEEEHHHHHHHHHHHHTCC-CCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHH
T ss_pred             HHHHhcC-CCCeEEecCCCCCcHHHHHHHHHHHhCCC-CCceeCCCCCCCCceecCCHHHHHHHcCCCCCCCHHHHHHHH
Confidence            9999875 36789885 57899999999999998742 2211 11112233456788999987 9999999999999999


Q ss_pred             HHHHHHc
Q 040253          316 VDTCRAK  322 (338)
Q Consensus       316 ~~~~~~~  322 (338)
                      ++|++++
T Consensus       327 ~~~~~~~  333 (343)
T 2b69_A          327 IHYFRKE  333 (343)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=100.00  E-value=1.4e-42  Score=310.50  Aligned_cols=306  Identities=19%  Similarity=0.280  Sum_probs=225.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhhCCccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPIRGCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~d~vi~   83 (338)
                      |+||||||+||||++++++|+++ |++|++++|+......+   ..    .++++++.+|++|. +.+.++++++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~---~~----~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF---LN----HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGG---TT----CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHh---hc----CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999998 89999999987553321   11    15789999999985 457778889999999


Q ss_pred             ecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+..... ........++.|+.++.++++++++.+  ++|||+||.++|+  .....+++|+++...  ..+...|.+.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~v~g--~~~~~~~~e~~~~~~--~~~~~~~~~~  147 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYG--MCSDKYFDEDHSNLI--VGPVNKPRWI  147 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGB--TCCCSSBCTTTCCCB--CCCTTCGGGH
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecHHHcC--CCCCCCcCCcccccc--cCcccCcccc
Confidence            99864411 112334678999999999999999877  7999999999998  334456777764311  0112245679


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC------ChhHHHhh-hhcccCCC-CCCCCCC-CccccHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM------PPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDD  233 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D  233 (338)
                      |+.+|..+|.+++.+++++|++++++||+.+|||+.....      ...+..++ ....+... .++.+.+ ++++|++|
T Consensus       148 Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D  227 (345)
T 2bll_A          148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD  227 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHH
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHH
Confidence            9999999999999998888999999999999999864311      11222222 12233332 2233333 68999999


Q ss_pred             HHHHHHHhhcCCC---CCCceEEec-C-CCCHHHHHHHHHHhCCCCCCCCCCCCc---------------cccccccccc
Q 040253          234 LCSAHIFLFEHPN---AKGRYICSS-H-PATILELAKFLREKYPEFNVPTEFEDV---------------DENMKNMLFS  293 (338)
Q Consensus       234 ~a~~~~~~l~~~~---~~~~~~~~~-~-~~t~~e~~~~i~~~~~~~~~~~~~~~~---------------~~~~~~~~~~  293 (338)
                      +|++++.+++++.   .+++||+++ + ++|+.|+++.+.+.+|........+..               ........+|
T Consensus       228 va~a~~~~~~~~~~~~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  307 (345)
T 2bll_A          228 GIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPS  307 (345)
T ss_dssp             HHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBC
T ss_pred             HHHHHHHHHhhccccCCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhccccccchhhhccc
Confidence            9999999998763   356899865 4 799999999999987643211111110               0122345678


Q ss_pred             hhhhhh-cCCcccccHHHHHHHHHHHHHHcCC
Q 040253          294 SKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGL  324 (338)
Q Consensus       294 ~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~  324 (338)
                      ++++++ |||+|+++++++|+++++|++++..
T Consensus       308 ~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~  339 (345)
T 2bll_A          308 IRNAHRCLDWEPKIDMQETIDETLDFFLRTVD  339 (345)
T ss_dssp             CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCCccccHHHHHHHHHHHHHHcCC
Confidence            899887 9999999999999999999987643

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=100.00  E-value=1.1e-42  Score=311.43  Aligned_cols=304  Identities=16%  Similarity=0.145  Sum_probs=223.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cH-HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NK-KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~   80 (338)
                      ||+||||||+||||++++++|++.|++|++++|+.. .. .....+...    .+++++.+|++|++++.+++++  +|+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~d~   76 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL----GNFEFVHGDIRNKNDVTRLITKYMPDS   76 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccC----CceEEEEcCCCCHHHHHHHHhccCCCE
Confidence            479999999999999999999999999999998542 22 222222211    3689999999999999999987  999


Q ss_pred             EEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCcc-EEEEecCceeeeccCCCCCC----------------c
Q 040253           81 VFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVR-RLVFTSSAGTLDVEEHRKPV----------------Y  142 (338)
Q Consensus        81 vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~Ss~~v~~~~~~~~~~----------------~  142 (338)
                      |||+|+..... ........++.|+.++.++++++.+.+ ++ +|||+||.++|+.  ....+                +
T Consensus        77 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~iv~~SS~~v~g~--~~~~~~~e~~~~~~~~~~~~~~  153 (347)
T 1orr_A           77 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNKVYGD--LEQYKYNETETRYTCVDKPNGY  153 (347)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGGGGTT--CTTSCEEECSSCEEETTCTTCB
T ss_pred             EEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEeccHHHhCC--CCcCCcccccccccccccccCc
Confidence            99999964421 112345788999999999999999888 64 9999999999973  22222                3


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-hhHHHhh-hhcccC----
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-PSLITAL-SPITRN----  216 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~----  216 (338)
                      +|+.         +..|.+.|+.+|.++|.+++.+++++|++++++||+.+|||+...... ..+...+ ....+.    
T Consensus       154 ~e~~---------~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (347)
T 1orr_A          154 DEST---------QLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGIN  224 (347)
T ss_dssp             CTTS---------CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCC
T ss_pred             cccC---------CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCC
Confidence            3333         334778999999999999999998889999999999999998643211 1111111 111122    


Q ss_pred             -CC-CCCCCCC-CccccHHHHHHHHHHhhcCC--CCCCceEEecC---CCCHHHHHHHHHHhCCCCCCCCC-CCCccccc
Q 040253          217 -EA-HYPIIKQ-GQFVHLDDLCSAHIFLFEHP--NAKGRYICSSH---PATILELAKFLREKYPEFNVPTE-FEDVDENM  287 (338)
Q Consensus       217 -~~-~~~~~~~-~~~i~v~D~a~~~~~~l~~~--~~~~~~~~~~~---~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~  287 (338)
                       +. .++.+.+ ++++|++|+|++++.+++..  ..+++||+++.   ++|+.|+++.+.+.+|.. .+.. .+..+...
T Consensus       225 ~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~  303 (347)
T 1orr_A          225 KPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNID-MRFTNLPVRESDQ  303 (347)
T ss_dssp             CCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTCC-CCEEEECCCSSCC
T ss_pred             CCeEEecCCcceEeeEEHHHHHHHHHHHHhccccCCCCEEEeCCCCCCCccHHHHHHHHHHHhCCC-CCceeCCCCCCCc
Confidence             21 2333333 67999999999999999852  23558998653   499999999999998742 2221 11223334


Q ss_pred             cccccchhhhhh-cCCcccccHHHHHHHHHHHHHHcCCC
Q 040253          288 KNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGLL  325 (338)
Q Consensus       288 ~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~~  325 (338)
                      ....+|++++++ |||+|+++++++|+++++|+++....
T Consensus       304 ~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~~  342 (347)
T 1orr_A          304 RVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILEH  342 (347)
T ss_dssp             SEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC---
T ss_pred             ceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHHh
Confidence            456789999976 99999999999999999999987654

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=100.00  E-value=1.1e-42  Score=313.11  Aligned_cols=301  Identities=16%  Similarity=0.196  Sum_probs=224.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCC--cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPD--NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      |+||||||+||||++++++|++. |++|++++|+..  ....+..+   . ..++++++.+|++|.+++.++++  ++|+
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   76 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDI---S-ESNRYNFEHADICDSAEITRIFEQYQPDA   76 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTT---T-TCTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhh---h-cCCCeEEEECCCCCHHHHHHHHhhcCCCE
Confidence            47999999999999999999998 799999999652  22222111   1 12578999999999999999998  8999


Q ss_pred             EEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhC--CCcc-------EEEEecCceeeeccCCCCC--------Cc
Q 040253           81 VFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNA--KTVR-------RLVFTSSAGTLDVEEHRKP--------VY  142 (338)
Q Consensus        81 vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~-------~~v~~Ss~~v~~~~~~~~~--------~~  142 (338)
                      |||+|+..... ........+++|+.++.++++++...  + ++       +|||+||.++|+.......        ++
T Consensus        77 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~-v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~  155 (361)
T 1kew_A           77 VMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA-LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLF  155 (361)
T ss_dssp             EEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHT-SCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCB
T ss_pred             EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccC-cccccccCceEEEeCCHHHhCCCcccccccccccCCCC
Confidence            99999965411 11234578999999999999999987  6 65       9999999999973221011        56


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCC-CC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEA-HY  220 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~  220 (338)
                      +|++         +..|.+.|+.+|.++|.+++.+++++|++++++||+.+|||+.....  .+...+ ....+... .+
T Consensus       156 ~E~~---------~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~  224 (361)
T 1kew_A          156 TETT---------AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEK--LIPLVILNALEGKPLPIY  224 (361)
T ss_dssp             CTTS---------CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTS--HHHHHHHHHHHTCCEEEE
T ss_pred             CCCC---------CCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCccc--HHHHHHHHHHcCCCceEc
Confidence            6665         44577899999999999999999888999999999999999864321  111111 11223322 22


Q ss_pred             CCCCC-CccccHHHHHHHHHHhhcCCCCCCceEEec-CCCCHHHHHHHHHHhCCCCCC---CCC-----CCCcccccccc
Q 040253          221 PIIKQ-GQFVHLDDLCSAHIFLFEHPNAKGRYICSS-HPATILELAKFLREKYPEFNV---PTE-----FEDVDENMKNM  290 (338)
Q Consensus       221 ~~~~~-~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~-~~~t~~e~~~~i~~~~~~~~~---~~~-----~~~~~~~~~~~  290 (338)
                      +.+.. ++++|++|+|++++.+++....+++||+++ .++|+.|+++.+.+.+|....   |..     ....+......
T Consensus       225 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~  304 (361)
T 1kew_A          225 GKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRY  304 (361)
T ss_dssp             TTSCCEEEEEEHHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBC
T ss_pred             CCCceeEeeEEHHHHHHHHHHHHhCCCCCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecCCCCccccee
Confidence            33333 689999999999999998766667899854 679999999999988763111   100     01112222345


Q ss_pred             ccchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          291 LFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       291 ~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      .+|++++++ |||+|+++++++|+++++|++++
T Consensus       305 ~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~  337 (361)
T 1kew_A          305 AIDAGKISRELGWKPLETFESGIRKTVEWYLAN  337 (361)
T ss_dssp             CBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred             ecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence            689999987 99999999999999999999875

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=100.00  E-value=1.4e-41  Score=302.22  Aligned_cols=298  Identities=19%  Similarity=0.195  Sum_probs=225.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      .+|+||||||+||||++++++|+++|++|++++|+.......   ...   .++++++.+|++|.+++.++++  ++|+|
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~---l~~v~~~~~Dl~d~~~~~~~~~~~~~D~v   92 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREV---LPP---VAGLSVIEGSVTDAGLLERAFDSFKPTHV   92 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGG---SCS---CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhh---hhc---cCCceEEEeeCCCHHHHHHHHhhcCCCEE
Confidence            358999999999999999999999999999999965432210   000   1478999999999999999998  99999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      ||+|+.......... . +++|+.++.++++++.+.+ +++|||+||.++|+.......+++|++           .|.+
T Consensus        93 ih~A~~~~~~~~~~~-~-~~~N~~~~~~l~~a~~~~~-~~~iV~~SS~~~~~~~~~~~~~~~E~~-----------~~~~  158 (330)
T 2pzm_A           93 VHSAAAYKDPDDWAE-D-AATNVQGSINVAKAASKAG-VKRLLNFQTALCYGRPATVPIPIDSPT-----------APFT  158 (330)
T ss_dssp             EECCCCCSCTTCHHH-H-HHHHTHHHHHHHHHHHHHT-CSEEEEEEEGGGGCSCSSSSBCTTCCC-----------CCCS
T ss_pred             EECCccCCCccccCh-h-HHHHHHHHHHHHHHHHHcC-CCEEEEecCHHHhCCCccCCCCcCCCC-----------CCCC
Confidence            999997553211222 3 8999999999999999888 889999999999973211111566664           3567


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHH-HHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS-AHIF  240 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~-~~~~  240 (338)
                      .|+.+|.++|.+++.+    +++++++||+++|||+....+...+..  ....+. ..+..+..++++|++|+|+ +++.
T Consensus       159 ~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~i~~~Dva~~a~~~  231 (330)
T 2pzm_A          159 SYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLAIGPIPTFYK--RLKAGQ-KCFCSDTVRDFLDMSDFLAIADLS  231 (330)
T ss_dssp             HHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCCSSHHHHHHH--HHHTTC-CCCEESCEECEEEHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCCCCHHHHHHH--HHHcCC-EEeCCCCEecceeHHHHHHHHHHH
Confidence            9999999999998764    899999999999999852221111111  111232 2232222467999999999 9999


Q ss_pred             hhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhh-----hhcCCcccccHHHHHH
Q 040253          241 LFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKL-----TDLGFKFKYSLDDMFT  313 (338)
Q Consensus       241 ~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~lg~~~~~~~~~~i~  313 (338)
                      +++.+. +++||++ +.++|+.|+++.+.+.+|..  +... +..+ ......+|++++     ++|||+|+++++++|+
T Consensus       232 ~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~--~~~~~~~~~-~~~~~~~d~~k~~~~~l~~lG~~p~~~~~~~l~  307 (330)
T 2pzm_A          232 LQEGRP-TGVFNVSTGEGHSIKEVFDVVLDYVGAT--LAEPVPVVA-PGADDVPSVVLDPSKTETEFGWKAKVDFKDTIT  307 (330)
T ss_dssp             TSTTCC-CEEEEESCSCCEEHHHHHHHHHHHHTCC--CSSCCCEEC-CCTTSCSEECBCCHHHHHHHCCCCCCCHHHHHH
T ss_pred             HhhcCC-CCEEEeCCCCCCCHHHHHHHHHHHhCCC--CceeCCCCc-chhhccCCHHHHhhchHHHcCCcccCCHHHHHH
Confidence            998865 7789985 57899999999999998854  2222 2122 344567788887     7799999999999999


Q ss_pred             HHHHHHHHcCCCCCccCCC
Q 040253          314 GAVDTCRAKGLLPLLCENH  332 (338)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~  332 (338)
                      ++++|+++++++....+..
T Consensus       308 ~~~~~~~~~~~~~~~~~~~  326 (330)
T 2pzm_A          308 GQLAWYDKYGVTDIFSHLS  326 (330)
T ss_dssp             HHHHHHHHHCSCSCCCSSC
T ss_pred             HHHHHHHhhCcccccCcCC
Confidence            9999999999987665543

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=100.00  E-value=9.6e-42  Score=311.52  Aligned_cols=313  Identities=14%  Similarity=0.122  Sum_probs=224.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-----------------HHHHHhcCCCCCCcEEEEecccC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-----------------KVKHLLELPKASTHLTLWKADLA   66 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~Dl~   66 (338)
                      .+++||||||+||||++++++|+++|++|++++|......                 .+..+...  ...+++++.+|++
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~v~~~~~Dl~   87 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL--TGKSIELYVGDIC   87 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH--HCCCCEEEESCTT
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhc--cCCceEEEECCCC
Confidence            4789999999999999999999999999999998643211                 11111100  0147899999999


Q ss_pred             CCCCchhhhCC--ccEEEEecccCCCC--CCCcc--chhhhhhhHHHHHHHHHHHhCCCc-cEEEEecCceeeeccCCCC
Q 040253           67 EEGNFDEPIRG--CTGVFHLATPMDFE--SKDPE--NEVIRPTINGMVSIMRACKNAKTV-RRLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        67 d~~~~~~~~~~--~d~vi~~a~~~~~~--~~~~~--~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~Ss~~v~~~~~~~~  139 (338)
                      |.+++.+++++  +|+|||+||.....  ..++.  ...++.|+.++.++++++++.+ . ++|||+||.++|+..   .
T Consensus        88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~~~V~~SS~~vyg~~---~  163 (404)
T 1i24_A           88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG-EECHLVKLGTMGEYGTP---N  163 (404)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGGCCC---S
T ss_pred             CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhC-CCcEEEEeCcHHHhCCC---C
Confidence            99999998886  99999999965411  11221  2377899999999999999887 5 599999999999732   2


Q ss_pred             CCcCCCCCCchh-----hhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC-------------
Q 040253          140 PVYDETSWSDLD-----FVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS-------------  201 (338)
Q Consensus       140 ~~~~e~~~~~~~-----~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~-------------  201 (338)
                      .+++|+.|....     ....+..|.+.|+.+|.++|.+++.+++++|++++++||+++|||+....             
T Consensus       164 ~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~  243 (404)
T 1i24_A          164 IDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYD  243 (404)
T ss_dssp             SCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCS
T ss_pred             CCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccc
Confidence            456665321100     00013457789999999999999999888899999999999999986421             


Q ss_pred             --CChhHHHhh-hhcccCCC-CCCCCCC-CccccHHHHHHHHHHhhcCCCC-C--CceEEecCCCCHHHHHHHHHHh---
Q 040253          202 --MPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDDLCSAHIFLFEHPNA-K--GRYICSSHPATILELAKFLREK---  270 (338)
Q Consensus       202 --~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~~~~l~~~~~-~--~~~~~~~~~~t~~e~~~~i~~~---  270 (338)
                        ....+..++ ....+... .++.+.+ ++|+|++|+|++++.+++++.. +  ++||++++++|+.|+++.+.+.   
T Consensus       244 ~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~~~~s~~e~~~~i~~~~~~  323 (404)
T 1i24_A          244 AVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSK  323 (404)
T ss_dssp             TTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECCCCCcHHHHHHHHHHHHHh
Confidence              011122222 22234333 3344433 7899999999999999987654 3  4899876889999999999997   


Q ss_pred             CCCCCCCCC-CCCcc--ccccccccchhhhhhcCCcccccHHHHHHHHHHHHHHcC
Q 040253          271 YPEFNVPTE-FEDVD--ENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       271 ~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      +|. +.+.. .+...  .......+|++++++|||+|+++++++++++++|++...
T Consensus       324 ~g~-~~~~~~~p~~~~~~~~~~~~~d~~k~~~LG~~p~~~~~~~l~~~~~~~~~~~  378 (404)
T 1i24_A          324 LGL-DVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFK  378 (404)
T ss_dssp             TTC-CCCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTG
T ss_pred             hCC-CccccccCcccCccccceEecCHHHHHHcCCCcCcCHHHHHHHHHHHHHhhh
Confidence            553 22211 11111  122345678888888999999999999999999997543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=100.00  E-value=4.5e-41  Score=292.98  Aligned_cols=265  Identities=15%  Similarity=0.142  Sum_probs=207.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      |||+|||||| ||||++++++|+++|++|++++|++.+...+..        .+++++.+|++|.+     +.++|+|||
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~-----~~~~d~vi~   69 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS-----LDGVTHLLI   69 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC-----CTTCCEEEE
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc-----cCCCCEEEE
Confidence            5689999998 999999999999999999999998876655443        57899999999854     678999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHh--CCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKN--AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      +|+.....  .          ..+.++++++++  .+ +++|||+||.++|+  .....+++|++         +..|.+
T Consensus        70 ~a~~~~~~--~----------~~~~~l~~a~~~~~~~-~~~~v~~Ss~~vyg--~~~~~~~~E~~---------~~~p~~  125 (286)
T 3ius_A           70 STAPDSGG--D----------PVLAALGDQIAARAAQ-FRWVGYLSTTAVYG--DHDGAWVDETT---------PLTPTA  125 (286)
T ss_dssp             CCCCBTTB--C----------HHHHHHHHHHHHTGGG-CSEEEEEEEGGGGC--CCTTCEECTTS---------CCCCCS
T ss_pred             CCCccccc--c----------HHHHHHHHHHHhhcCC-ceEEEEeecceecC--CCCCCCcCCCC---------CCCCCC
Confidence            99864421  1          125788899988  55 78999999999998  44556788887         556788


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC-CCCCCccccHHHHHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP-IIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~v~D~a~~~~~  240 (338)
                      .|+.+|+.+|++++.+   .+++++++||+++||++....        .....+....+. .+..++|+|++|+|++++.
T Consensus       126 ~Y~~sK~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~  194 (286)
T 3ius_A          126 ARGRWRVMAEQQWQAV---PNLPLHVFRLAGIYGPGRGPF--------SKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAA  194 (286)
T ss_dssp             HHHHHHHHHHHHHHHS---TTCCEEEEEECEEEBTTBSSS--------TTSSSSCCCEEECTTCCBCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh---cCCCEEEEeccceECCCchHH--------HHHhcCCccccCCCCcccceEEHHHHHHHHHH
Confidence            9999999999999875   599999999999999985431        111223333222 2333789999999999999


Q ss_pred             hhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCCCCcc---cc------ccccccchhhhhh-cCCcccc-cH
Q 040253          241 LFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEFEDVD---EN------MKNMLFSSKKLTD-LGFKFKY-SL  308 (338)
Q Consensus       241 ~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~-lg~~~~~-~~  308 (338)
                      +++++..+++||++ ++++|+.|+++.+.+.+|.. .+..+...+   ..      .....+|++++++ |||+|++ ++
T Consensus       195 ~~~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~  273 (286)
T 3ius_A          195 SMARPDPGAVYNVCDDEPVPPQDVIAYAAELQGLP-LPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNY  273 (286)
T ss_dssp             HHHSCCTTCEEEECCSCCBCHHHHHHHHHHHHTCC-CCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSH
T ss_pred             HHhCCCCCCEEEEeCCCCccHHHHHHHHHHHcCCC-CCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCH
Confidence            99998877799984 67899999999999998753 222211111   11      1456789999998 9999999 69


Q ss_pred             HHHHHHHHHH
Q 040253          309 DDMFTGAVDT  318 (338)
Q Consensus       309 ~~~i~~~~~~  318 (338)
                      +++|+++++.
T Consensus       274 ~e~l~~~~~~  283 (286)
T 3ius_A          274 RVGLEALQAD  283 (286)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999999864

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=100.00  E-value=1.8e-42  Score=306.67  Aligned_cols=287  Identities=16%  Similarity=0.183  Sum_probs=219.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      +|+||||||+||||++++++|+++|++|++++|+.                      .+|++|.+++.++++  ++|+||
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~----------------------~~D~~d~~~~~~~~~~~~~d~vi   60 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASERIDQVY   60 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc----------------------cCCccCHHHHHHHHHhcCCCEEE
Confidence            57999999999999999999999999999887752                      269999999999998  999999


Q ss_pred             EecccCCCC--CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC-
Q 040253           83 HLATPMDFE--SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT-  159 (338)
Q Consensus        83 ~~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p-  159 (338)
                      |+|+.....  ........++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|+++..     .+..| 
T Consensus        61 h~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~SS~~vyg--~~~~~~~~E~~~~~-----~~~~p~  132 (321)
T 1e6u_A           61 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYP--KLAKQPMAESELLQ-----GTLEPT  132 (321)
T ss_dssp             ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSC--TTCCSSBCGGGTTS-----SCCCGG
T ss_pred             EcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccHHHcC--CCCCCCcCcccccc-----CCCCCC
Confidence            999965310  112335788999999999999999988 88999999999998  33455677775321     02234 


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC--ChhHHHhhhhc-----cc-CCC-CCCCCCC-Cccc
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM--PPSLITALSPI-----TR-NEA-HYPIIKQ-GQFV  229 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~-----~~-~~~-~~~~~~~-~~~i  229 (338)
                      .+.|+.+|..+|.+++.++++++++++++||+.+|||+.....  ...+..++...     .+ .+. .++.+.. ++|+
T Consensus       133 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i  212 (321)
T 1e6u_A          133 NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFL  212 (321)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEE
T ss_pred             CCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeE
Confidence            3589999999999999998888999999999999999865321  11111111111     12 222 2333333 7899


Q ss_pred             cHHHHHHHHHHhhcCCCC---------CCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhh
Q 040253          230 HLDDLCSAHIFLFEHPNA---------KGRYIC-SSHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLT  298 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~---------~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  298 (338)
                      |++|+|++++.+++++..         +++||+ +++++|+.|+++.+.+.+|.. .+.. ....+.......+|+++++
T Consensus       213 ~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~d~~k~~  291 (321)
T 1e6u_A          213 HVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYK-GRVVFDASKPDGTPRKLLDVTRLH  291 (321)
T ss_dssp             EHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCC-SEEEEETTSCCCCSBCCBCCHHHH
T ss_pred             EHHHHHHHHHHHHhCcccccccccccCCceEEeCCCCCccHHHHHHHHHHHhCCC-CceEeCCCCCCCcccccCCHHHHH
Confidence            999999999999987654         478998 567899999999999998742 2111 1112233445678999998


Q ss_pred             hcCCcccccHHHHHHHHHHHHHHc
Q 040253          299 DLGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       299 ~lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      +|||+|+++++++|+++++|++++
T Consensus       292 ~lG~~p~~~~~~~l~~~~~~~~~~  315 (321)
T 1e6u_A          292 QLGWYHEISLEAGLASTYQWFLEN  315 (321)
T ss_dssp             HTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred             hcCCccCCcHHHHHHHHHHHHHHH
Confidence            899999999999999999999875

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=100.00  E-value=1.4e-41  Score=307.51  Aligned_cols=306  Identities=16%  Similarity=0.152  Sum_probs=227.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH--HHHHHHhcCCC--CCCcEEEEecccCCCCCchhhhCC--c
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK--KKVKHLLELPK--ASTHLTLWKADLAEEGNFDEPIRG--C   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~--~   78 (338)
                      +|+||||||+||||++++++|+++|++|++++|++...  ..++.+.....  ...+++++.+|++|.+++.+++++  +
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~  103 (375)
T 1t2a_A           24 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP  103 (375)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence            37999999999999999999999999999999976531  11111100000  114789999999999999888874  7


Q ss_pred             cEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCc---cEEEEecCceeeeccCCCCCCcCCCCCCchhhhh
Q 040253           79 TGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTV---RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVR  154 (338)
Q Consensus        79 d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~  154 (338)
                      |+|||+|+..... ........+++|+.++.++++++...+ +   ++|||+||.++|+  .....+++|++        
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~~~~iv~~SS~~~~~--~~~~~~~~E~~--------  172 (375)
T 1t2a_A          104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCG-LINSVKFYQASTSELYG--KVQEIPQKETT--------  172 (375)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGGGTC--SCSSSSBCTTS--------
T ss_pred             CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCccceEEEecchhhhC--CCCCCCCCccC--------
Confidence            9999999965421 112344678999999999999999887 5   7999999999997  33345778876        


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh-hHHHhh-hhcccCCC--CCCCCCC-Cccc
Q 040253          155 SVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP-SLITAL-SPITRNEA--HYPIIKQ-GQFV  229 (338)
Q Consensus       155 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~-~~~i  229 (338)
                       +..|.+.|+.+|.++|.+++.++++++++++++||+++|||+....... .+...+ ....+...  .++.+.. ++|+
T Consensus       173 -~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i  251 (375)
T 1t2a_A          173 -PFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWG  251 (375)
T ss_dssp             -CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCE
T ss_pred             -CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEeCCCCceeeeE
Confidence             4457789999999999999999988899999999999999986543221 111111 11223322  2333333 7899


Q ss_pred             cHHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCC------CCCC------------CCC---ccccc
Q 040253          230 HLDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFN------VPTE------------FED---VDENM  287 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~------~~~~------------~~~---~~~~~  287 (338)
                      |++|+|++++.+++++. .++||+ +++++|+.|+++.+.+.+|...      +|..            +..   .+...
T Consensus       252 ~v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  330 (375)
T 1t2a_A          252 HAKDYVEAMWLMLQNDE-PEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEV  330 (375)
T ss_dssp             EHHHHHHHHHHHHHSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCC
T ss_pred             EHHHHHHHHHHHHhcCC-CceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCCcccc
Confidence            99999999999998765 578988 5678999999999999987521      1111            000   11223


Q ss_pred             cccccchhhhhh-cCCcccccHHHHHHHHHHHHHHcC
Q 040253          288 KNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       288 ~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      ....+|++++++ |||+|+++++++|+++++|+++..
T Consensus       331 ~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~  367 (375)
T 1t2a_A          331 DFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM  367 (375)
T ss_dssp             CBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhh
Confidence            345679999987 999999999999999999998753

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=100.00  E-value=7.4e-43  Score=304.39  Aligned_cols=270  Identities=18%  Similarity=0.140  Sum_probs=213.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |+|||||||||||++++++|+++|++|++++|.                       .+|++|.+.+.++++  ++|+|||
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~D~~d~~~~~~~~~~~~~d~vi~   62 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK-----------------------LLDITNISQVQQVVQEIRPHIIIH   62 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT-----------------------TSCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc-----------------------ccCCCCHHHHHHHHHhcCCCEEEE
Confidence            499999999999999999999999999999982                       369999999999988  7999999


Q ss_pred             ecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+..... ........++.|+.++.++++++++.+ + +|||+||.++|+  .....+++|++         +..|.+.
T Consensus        63 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~vy~--~~~~~~~~E~~---------~~~p~~~  129 (287)
T 3sc6_A           63 CAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVG-A-KLVYISTDYVFQ--GDRPEGYDEFH---------NPAPINI  129 (287)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGSC--CCCSSCBCTTS---------CCCCCSH
T ss_pred             CCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEchhhhcC--CCCCCCCCCCC---------CCCCCCH
Confidence            99976521 123456889999999999999999988 5 799999999997  44557788887         4568889


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhc-ccCCCCCCCCCCCccccHHHHHHHHHHh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPI-TRNEAHYPIIKQGQFVHLDDLCSAHIFL  241 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~D~a~~~~~~  241 (338)
                      |+.+|..+|.+++.+    ..+++++||+.+|||+...    .+....... .+..........++++|++|+|++++.+
T Consensus       130 Y~~sK~~~E~~~~~~----~~~~~ilR~~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~  201 (287)
T 3sc6_A          130 YGASKYAGEQFVKEL----HNKYFIVRTSWLYGKYGNN----FVKTMIRLGKEREEISVVADQIGSPTYVADLNVMINKL  201 (287)
T ss_dssp             HHHHHHHHHHHHHHH----CSSEEEEEECSEECSSSCC----HHHHHHHHHTTCSEEEEECSCEECCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh----CCCcEEEeeeeecCCCCCc----HHHHHHHHHHcCCCeEeecCcccCceEHHHHHHHHHHH
Confidence            999999999999765    4478999999999997543    111222211 2332222223347899999999999999


Q ss_pred             hcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-C-----CCccccccccccchhhhhhcCCcccccHHHHHHH
Q 040253          242 FEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-F-----EDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTG  314 (338)
Q Consensus       242 l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~  314 (338)
                      ++++. +++||+ +++++|+.|+++.+.+.+|.. .+.. .     ...........+|++++++|||.|.++++++|++
T Consensus       202 ~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l~~  279 (287)
T 3sc6_A          202 IHTSL-YGTYHVSNTGSCSWFEFAKKIFSYANMK-VNVLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLER  279 (287)
T ss_dssp             HTSCC-CEEEECCCBSCEEHHHHHHHHHHHHTCC-CEEEEECHHHHCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHH
T ss_pred             HhCCC-CCeEEEcCCCcccHHHHHHHHHHHcCCC-cceeeeehhhcCcccCCCCcccccHHHHHhhCCCCCccHHHHHHH
Confidence            99877 779998 457899999999999998752 2111 1     1112334556789999999999999999999999


Q ss_pred             HHHHHHH
Q 040253          315 AVDTCRA  321 (338)
Q Consensus       315 ~~~~~~~  321 (338)
                      +++|+++
T Consensus       280 ~~~~~~~  286 (287)
T 3sc6_A          280 FFIETKS  286 (287)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHhc
Confidence            9999865

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=100.00  E-value=6e-42  Score=302.84  Aligned_cols=294  Identities=20%  Similarity=0.264  Sum_probs=222.4

Q ss_pred             EEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            7 TVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      +||||||+||||++++++|+++  |++|++++|+....             .+++++.+|++|++++.++++  ++|+||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-------------~~~~~~~~D~~d~~~~~~~~~~~~~d~vi   67 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT-------------GGIKFITLDVSNRDEIDRAVEKYSIDAIF   67 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC-------------TTCCEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc-------------cCceEEEecCCCHHHHHHHHhhcCCcEEE
Confidence            5899999999999999999998  89999999875432             145788999999999999887  899999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      |+|+.............++.|+.++.++++++++.+ +++|||+||.++|+... ...+.+|++         +..|.+.
T Consensus        68 h~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~-~~~~~~e~~---------~~~p~~~  136 (317)
T 3ajr_A           68 HLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHR-VEKVVIPSTIGVFGPET-PKNKVPSIT---------ITRPRTM  136 (317)
T ss_dssp             ECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGCCTTS-CSSSBCSSS---------CCCCCSH
T ss_pred             ECCcccCCccccChHHHhhhhhHHHHHHHHHHHHcC-CCEEEEecCHHHhCCCC-CCCCccccc---------cCCCCch
Confidence            999864321122345788999999999999999988 88999999999997321 223556665         4457889


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC--CCh-hHHHhhhhcccCC-CCCCCC-CCCccccHHHHHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS--MPP-SLITALSPITRNE-AHYPII-KQGQFVHLDDLCSA  237 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~-~~~~~~~~~~~~~-~~~~~~-~~~~~i~v~D~a~~  237 (338)
                      |+.+|.++|.+++.+++++|++++++||+.+||+...+.  ... ....+.....+.. ..+..+ ..++++|++|+|++
T Consensus       137 Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a  216 (317)
T 3ajr_A          137 FGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKA  216 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHH
Confidence            999999999999999888899999999999999864322  111 1111122222222 222222 33789999999999


Q ss_pred             HHHhhcCCCC----CCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccc---cccccccchhhhhh-cCCcccccHH
Q 040253          238 HIFLFEHPNA----KGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDE---NMKNMLFSSKKLTD-LGFKFKYSLD  309 (338)
Q Consensus       238 ~~~~l~~~~~----~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-lg~~~~~~~~  309 (338)
                      ++.+++++..    +++||+++..+|+.|+++.+.+.+|...++.... ...   ......+|++++++ |||+|+++++
T Consensus       217 ~~~~l~~~~~~~~~g~~~~i~~~~~s~~e~~~~i~~~~~~~~i~~~~~-~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~  295 (317)
T 3ajr_A          217 LVDLYEADRDKLVLRNGYNVTAYTFTPSELYSKIKERIPEFEIEYKED-FRDKIAATWPESLDSSEASNEWGFSIEYDLD  295 (317)
T ss_dssp             HHHHHHCCGGGCSSCSCEECCSEEECHHHHHHHHHTTCCSCCEEECCC-HHHHHHTTSCSCBCCHHHHHHHCCCCCCCHH
T ss_pred             HHHHHhCCccccccCceEecCCccccHHHHHHHHHHHCCccccccccc-cchhhccccccccCHHHHHHHcCCCCCCCHH
Confidence            9999987643    3689997778999999999999987433222111 111   11123578899987 9999999999


Q ss_pred             HHHHHHHHHHHHcCCC
Q 040253          310 DMFTGAVDTCRAKGLL  325 (338)
Q Consensus       310 ~~i~~~~~~~~~~~~~  325 (338)
                      ++|+++++|++++.-.
T Consensus       296 ~~l~~~~~~~~~~~~~  311 (317)
T 3ajr_A          296 RTIDDMIDHISEKLGI  311 (317)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhhhcc
Confidence            9999999999876443

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=100.00  E-value=2.7e-41  Score=305.27  Aligned_cols=316  Identities=16%  Similarity=0.194  Sum_probs=226.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH--HHHHHHhcCC-CCCCcEEEEecccCCCCCchhhhCC--cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK--KKVKHLLELP-KASTHLTLWKADLAEEGNFDEPIRG--CT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~--~d   79 (338)
                      ||+||||||+||||++++++|+++|++|++++|+....  ..+..+.... ....+++++.+|++|.+++.+++++  +|
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence            57999999999999999999999999999999976531  1122111100 0124789999999999999888874  79


Q ss_pred             EEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCc---cEEEEecCceeeeccCCCCCCcCCCCCCchhhhhh
Q 040253           80 GVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTV---RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRS  155 (338)
Q Consensus        80 ~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~---~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~  155 (338)
                      +|||+|+..... ..+.....+++|+.++.++++++...+ +   ++|||+||.++|+  .....+++|++         
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~~iv~~SS~~v~g--~~~~~~~~E~~---------  148 (372)
T 1db3_A           81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG-LEKKTRFYQASTSELYG--LVQEIPQKETT---------  148 (372)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTT-CTTTCEEEEEEEGGGGT--TCCSSSBCTTS---------
T ss_pred             EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhC-CCCCcEEEEeCChhhhC--CCCCCCCCccC---------
Confidence            999999965422 223345678999999999999999887 6   7999999999997  33345778876         


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh-hHHHhh-hhcccCCC--CCCCCCC-Ccccc
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP-SLITAL-SPITRNEA--HYPIIKQ-GQFVH  230 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~-~~~i~  230 (338)
                      +..|.+.|+.+|.++|.+++.++++++++++++|++++|||+....... .+...+ ....+...  .++.+.+ ++|+|
T Consensus       149 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~  228 (372)
T 1db3_A          149 PFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGH  228 (372)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEE
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceeecCCCceeeeeE
Confidence            4457789999999999999999998899999999999999986543221 111122 11223322  2333333 78999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCC------CCCC----------------------CC
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFN------VPTE----------------------FE  281 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~------~~~~----------------------~~  281 (338)
                      ++|+|++++.+++++. +++||+ +++++|+.|+++.+.+.+|...      +|.+                      +.
T Consensus       229 v~Dva~a~~~~~~~~~-~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (372)
T 1db3_A          229 AKDYVKMQWMMLQQEQ-PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVD  307 (372)
T ss_dssp             HHHHHHHHHHTTSSSS-CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHhcCC-CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccceeecc
Confidence            9999999999998764 578987 5678999999999999987411      1110                      00


Q ss_pred             C---ccccccccccchhhhhh-cCCcccccHHHHHHHHHHHHHHcCCCCCccCCCc
Q 040253          282 D---VDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGLLPLLCENHV  333 (338)
Q Consensus       282 ~---~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  333 (338)
                      .   .+.......+|++++++ |||+|+++++++|+++++|++++.......+.|.
T Consensus       308 ~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~~~~~~~  363 (372)
T 1db3_A          308 PRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHG  363 (372)
T ss_dssp             GGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC------
T ss_pred             ccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhccchhhhcC
Confidence            0   11222345679999987 9999999999999999999987654444444443

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=100.00  E-value=2.8e-41  Score=301.24  Aligned_cols=303  Identities=19%  Similarity=0.218  Sum_probs=220.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      |+||||||+||||++++++|+++|++|++++|.... ......+....  ..+++++.+|++|++++.++++  ++|+||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi   78 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG--GKHPTFVEGDIRNEALMTEILHDHAIDTVI   78 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH--TSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhc--CCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence            489999999999999999999999999999874322 11111111100  1357899999999998888886  599999


Q ss_pred             EecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+..... ........++.|+.++.++++++++.+ +++|||+||.++|+  .....+++|+.+        ..++.+
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~g--~~~~~~~~e~~~--------~~~~~~  147 (338)
T 1udb_A           79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNFIFSSSATVYG--DNPKIPYVESFP--------TGTPQS  147 (338)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGC--SCCSSSBCTTSC--------CCCCSS
T ss_pred             ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEccHHHhC--CCCCCCcCcccC--------CCCCCC
Confidence            999864311 112234678999999999999998888 88999999999997  334456777762        112377


Q ss_pred             hHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCC------C-CCh-hHHHhhhhcccCCC---------CCCCC
Q 040253          162 MYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTS------S-MPP-SLITALSPITRNEA---------HYPII  223 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~------~-~~~-~~~~~~~~~~~~~~---------~~~~~  223 (338)
                      .|+.+|.++|.+++.+++++ +++++++||+++|||....      . ... .+........+...         ..+.+
T Consensus       148 ~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g  227 (338)
T 1udb_A          148 PYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDG  227 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSS
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCC
Confidence            99999999999999998887 8999999999999985311      1 011 11111111111111         11122


Q ss_pred             CC-CccccHHHHHHHHHHhhcCC--CCC-CceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhh
Q 040253          224 KQ-GQFVHLDDLCSAHIFLFEHP--NAK-GRYICS-SHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKL  297 (338)
Q Consensus       224 ~~-~~~i~v~D~a~~~~~~l~~~--~~~-~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  297 (338)
                      .+ ++|+|++|+|++++.++++.  ..+ ++||++ ++++|+.|+++.+.+.+|. +++... ...+.......+|++++
T Consensus       228 ~~~~~~i~v~Dva~a~~~~l~~~~~~~~~~~yni~~~~~~s~~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~~k~  306 (338)
T 1udb_A          228 TGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGK-PVNYHFAPRREGDLPAYWADASKA  306 (338)
T ss_dssp             SCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTS-CCCEEEECCCTTCCSBCCBCCHHH
T ss_pred             ceeeeeEEHHHHHHHHHHHHhhhhccCCCcEEEecCCCceeHHHHHHHHHHHhCC-CCcceeCCCCCCchhhhhcCHHHH
Confidence            23 68999999999999998753  233 589984 6789999999999998874 333221 11223344567899999


Q ss_pred             hh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          298 TD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       298 ~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ++ |||+|+++++++|+++++|++++
T Consensus       307 ~~~lG~~p~~~l~~~l~~~~~w~~~~  332 (338)
T 1udb_A          307 DRELNWRVTRTLDEMAQDTWHWQSRH  332 (338)
T ss_dssp             HHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCCcCCCHHHHHHHHHHHHHhc
Confidence            76 99999999999999999999875

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=100.00  E-value=6e-42  Score=301.83  Aligned_cols=290  Identities=15%  Similarity=0.168  Sum_probs=210.6

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC-----ccE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG-----CTG   80 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~d~   80 (338)
                      +||||||+||||++++++|+++| ++|++++|++.... ...+       +++. +.+|++|.+.+.+++++     +|+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~~-------~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~   71 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNL-------VDLN-IADYMDKEDFLIQIMAGEEFGDVEA   71 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG-GHHH-------HTSC-CSEEEEHHHHHHHHHTTCCCSSCCE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch-hhhc-------Ccce-eccccccHHHHHHHHhccccCCCcE
Confidence            58999999999999999999999 99999999765431 1111       1223 77899998888888875     999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |||+|+..... .......++.|+.++.++++++++.+ + +|||+||.++|+  .....+++|++         +..|.
T Consensus        72 vi~~a~~~~~~-~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~g--~~~~~~~~E~~---------~~~p~  137 (310)
T 1eq2_A           72 IFHEGACSSTT-EWDGKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYG--GRTSDFIESRE---------YEKPL  137 (310)
T ss_dssp             EEECCSCCCTT-CCCHHHHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGT--TCCSCBCSSGG---------GCCCS
T ss_pred             EEECcccccCc-ccCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeHHHhC--CCCCCCCCCCC---------CCCCC
Confidence            99999976542 33455789999999999999999988 7 999999999997  33344677776         45678


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC--CChhHHHhhh-hcccCCC-CCCCC-C-CCccccHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS--MPPSLITALS-PITRNEA-HYPII-K-QGQFVHLDDL  234 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~-~~~~~~~-~~~~~-~-~~~~i~v~D~  234 (338)
                      +.|+.+|..+|.+++.+++++|++++++||+++|||+....  ....+...+. ...+... .++.+ . .++++|++|+
T Consensus       138 ~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dv  217 (310)
T 1eq2_A          138 NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDV  217 (310)
T ss_dssp             SHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHH
Confidence            89999999999999999888899999999999999986421  1111211111 1223332 23333 2 4689999999


Q ss_pred             HHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccc-----cccccccchhhhhhcCC-ccccc
Q 040253          235 CSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDE-----NMKNMLFSSKKLTDLGF-KFKYS  307 (338)
Q Consensus       235 a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lg~-~~~~~  307 (338)
                      |++++.+++++. +++||+ +++++|+.|+++.+.+.+|...+  .....+.     .......|++++++||| .|.++
T Consensus       218 a~~~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~  294 (310)
T 1eq2_A          218 ADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQI--EYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKT  294 (310)
T ss_dssp             HHHHHHHHHHCC-CEEEEESCSCCBCHHHHHHHC-----------------------CCCSCCBCCHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHhcCC-CCeEEEeCCCccCHHHHHHHHHHHcCCCCc--eeCCCChhhhcccccccccchHHHHhcCCCCCCCC
Confidence            999999998876 779998 46889999999999999875311  1111111     12345678889988999 78889


Q ss_pred             HHHHHHHHHHHHHHc
Q 040253          308 LDDMFTGAVDTCRAK  322 (338)
Q Consensus       308 ~~~~i~~~~~~~~~~  322 (338)
                      ++++|+++++|++++
T Consensus       295 l~~~l~~~~~~~~~~  309 (310)
T 1eq2_A          295 VAEGVTEYMAWLNRD  309 (310)
T ss_dssp             HHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999998653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=100.00  E-value=7.6e-41  Score=299.14  Aligned_cols=301  Identities=16%  Similarity=0.150  Sum_probs=228.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH--HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK--KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~   80 (338)
                      +|+||||||+||||++++++|+++|++|++++|++....  .+..+.    ..++++++.+|++|.+++.+++++  +|+
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   78 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELG----IENDVKIIHMDLLEFSNIIRTIEKVQPDE   78 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTT----CTTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhcc----ccCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence            579999999999999999999999999999999875432  222211    114789999999999999988874  699


Q ss_pred             EEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCc-cEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           81 VFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTV-RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        81 vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      |||+|+..... ..+.....+++|+.++.++++++...+ + ++|||+||.++||  .....+++|+.         +..
T Consensus        79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~-~~~~iv~~SS~~vyg--~~~~~~~~e~~---------~~~  146 (345)
T 2z1m_A           79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVK-PDTKFYQASTSEMFG--KVQEIPQTEKT---------PFY  146 (345)
T ss_dssp             EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHC-TTCEEEEEEEGGGGC--SCSSSSBCTTS---------CCC
T ss_pred             EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEechhhcC--CCCCCCCCccC---------CCC
Confidence            99999965421 123455789999999999999999877 5 7999999999998  33445677776         445


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-hhHHHhh-hhcccCCC--CCCCCCC-CccccHHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-PSLITAL-SPITRNEA--HYPIIKQ-GQFVHLDD  233 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~-~~~i~v~D  233 (338)
                      |.+.|+.+|.++|.+++.++++++++++++|++++|||+...... ..+...+ ....+...  .++.+.. ++++|++|
T Consensus       147 ~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~D  226 (345)
T 2z1m_A          147 PRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPE  226 (345)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHH
Confidence            778999999999999999999889999999999999998643321 1111111 11123222  2233333 67999999


Q ss_pred             HHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCC------CCCC------------CC---Cccccccccc
Q 040253          234 LCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFN------VPTE------------FE---DVDENMKNML  291 (338)
Q Consensus       234 ~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~------~~~~------------~~---~~~~~~~~~~  291 (338)
                      +|++++.+++++. .++||+ +++++|+.|+++.+.+.+|...      +|..            ..   ..+.......
T Consensus       227 va~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (345)
T 2z1m_A          227 YVEAMWLMMQQPE-PDDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILV  305 (345)
T ss_dssp             HHHHHHHHHTSSS-CCCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCC
T ss_pred             HHHHHHHHHhCCC-CceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCCcceee
Confidence            9999999998764 478988 5678999999999999987521      1110            00   0112233456


Q ss_pred             cchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          292 FSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       292 ~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      .|++++++ |||+|+++++++|+++++|++++
T Consensus       306 ~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~  337 (345)
T 2z1m_A          306 GNPEKAMKKLGWKPRTTFDELVEIMMEADLKR  337 (345)
T ss_dssp             BCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHcCCcccCCHHHHHHHHHHHHHHH
Confidence            78999987 99999999999999999999875

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=100.00  E-value=7.3e-41  Score=297.88  Aligned_cols=296  Identities=22%  Similarity=0.216  Sum_probs=218.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~v   81 (338)
                      .||+||||||+||||++++++|+++|++|++++|+......  .+..    .++++++.+|++|.+++.+++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~l~~----~~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE--HLKD----HPNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG--GSCC----CTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh--hHhh----cCCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            46899999999999999999999999999999997543211  0100    14789999999999999999987  9999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccC-CCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEE-HRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~-~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      ||+|+.......... . +++|+.++.++++++...+ +++|||+||.++|+... ....+++|++           .|.
T Consensus        94 ih~A~~~~~~~~~~~-~-~~~N~~~~~~l~~a~~~~~-~~~iV~~SS~~~~g~~~~~~~~~~~E~~-----------~p~  159 (333)
T 2q1w_A           94 VHTAASYKDPDDWYN-D-TLTNCVGGSNVVQAAKKNN-VGRFVYFQTALCYGVKPIQQPVRLDHPR-----------NPA  159 (333)
T ss_dssp             EECCCCCSCTTCHHH-H-HHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGCSCCCSSSBCTTSCC-----------CCT
T ss_pred             EECceecCCCccCCh-H-HHHHHHHHHHHHHHHHHhC-CCEEEEECcHHHhCCCcccCCCCcCCCC-----------CCC
Confidence            999997553211222 3 8999999999999999988 88999999999996211 1111566664           255


Q ss_pred             -chHHHHHHHHHHHHHH-HHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHH
Q 040253          161 -WMYFVSKTLAEQAAWK-FAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAH  238 (338)
Q Consensus       161 -~~Y~~sK~~~E~~~~~-~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~  238 (338)
                       +.|+.+|.++|.+++. ++     +++++||+++|||+........+..  ....+. ..+.....++++|++|+|+++
T Consensus       160 ~~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~i~v~Dva~ai  231 (333)
T 2q1w_A          160 NSSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNVSGPLPIFFQ--RLSEGK-KCFVTKARRDFVFVKDLARAT  231 (333)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCCSSHHHHHHH--HHHTTC-CCEEEECEECEEEHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCcCcHHHHHHH--HHHcCC-eeeCCCceEeeEEHHHHHHHH
Confidence             7999999999999976 43     7999999999999832111111111  111233 223311226899999999999


Q ss_pred             HHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccc-----cccccchhhhhhcCCcccccHHHHH
Q 040253          239 IFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDENM-----KNMLFSSKKLTDLGFKFKYSLDDMF  312 (338)
Q Consensus       239 ~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~lg~~~~~~~~~~i  312 (338)
                      +.+++.+. +++||+ ++..+|+.|+++.+.+.+|..  +......+...     ....+|+++++++||+|+++++++|
T Consensus       232 ~~~~~~~~-g~~~~v~~~~~~s~~e~~~~i~~~~g~~--~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~~l  308 (333)
T 2q1w_A          232 VRAVDGVG-HGAYHFSSGTDVAIKELYDAVVEAMALP--SYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLKETV  308 (333)
T ss_dssp             HHHHTTCC-CEEEECSCSCCEEHHHHHHHHHHHTTCS--SCCCCEEEECCTTSCCCCCBCCHHHHHHHCCCCCCCHHHHH
T ss_pred             HHHHhcCC-CCEEEeCCCCCccHHHHHHHHHHHhCCC--CceeCCCCCcccccccccccCCHHHHHhcCCCcCCCHHHHH
Confidence            99998876 778998 457899999999999999854  22222111122     4567899999888999999999999


Q ss_pred             HHHHHHHHHcCCCCCccC
Q 040253          313 TGAVDTCRAKGLLPLLCE  330 (338)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~  330 (338)
                      +++++|++++|.++....
T Consensus       309 ~~~~~~~~~~~~~~~~~~  326 (333)
T 2q1w_A          309 AAAVAYFREYGVSGGYTH  326 (333)
T ss_dssp             HHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHCCCCCCce
Confidence            999999999998876543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=100.00  E-value=1e-41  Score=306.38  Aligned_cols=292  Identities=14%  Similarity=0.144  Sum_probs=220.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----Cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----GC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~   78 (338)
                      +|+||||||+||||++++++|+++| ++|++++|+..... ...   .    .++. +.+|++|.+.+.++++     ++
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~-~~~---~----~~~~-~~~d~~~~~~~~~~~~~~~~~~~  116 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVN---L----VDLN-IADYMDKEDFLIQIMAGEEFGDV  116 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG-GGG---T----TTSC-CSEEEEHHHHHHHHHTTCCCSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch-hhc---c----cCce-EeeecCcHHHHHHHHhhcccCCC
Confidence            4789999999999999999999999 99999999765421 111   1    1233 7789999888888886     59


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      |+|||+|+..... .......++.|+.++.++++++.+.+ + +|||+||.++|+  .....+++|++         +..
T Consensus       117 d~Vih~A~~~~~~-~~~~~~~~~~n~~~~~~ll~a~~~~~-~-r~V~~SS~~v~g--~~~~~~~~E~~---------~~~  182 (357)
T 2x6t_A          117 EAIFHEGACSSTT-EWDGKYMMDNNYQYSKELLHYCLERE-I-PFLYASSAATYG--GRTSDFIESRE---------YEK  182 (357)
T ss_dssp             CEEEECCSCCCTT-CCCHHHHHHHTHHHHHHHHHHHHHHT-C-CEEEEEEGGGGC--SCSSCCCSSGG---------GCC
T ss_pred             CEEEECCcccCCc-cCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcchHHhC--CCCCCCcCCcC---------CCC
Confidence            9999999976542 33455789999999999999999988 7 999999999997  33344677776         456


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC--ChhHHHhhh-hcccCCC-CCCCCC--CCccccHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM--PPSLITALS-PITRNEA-HYPIIK--QGQFVHLD  232 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~-~~~~~~~-~~~~~~--~~~~i~v~  232 (338)
                      |.+.|+.+|.++|.+++.+++++|++++++||+++|||+.....  ...+...+. ...+... .++.+.  .++|+|++
T Consensus       183 p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  262 (357)
T 2x6t_A          183 PLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVG  262 (357)
T ss_dssp             CSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHH
Confidence            78899999999999999998888999999999999999865311  112222211 1223322 233332  35899999


Q ss_pred             HHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccc-----cccccccchhhhhhcCC-ccc
Q 040253          233 DLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDE-----NMKNMLFSSKKLTDLGF-KFK  305 (338)
Q Consensus       233 D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~lg~-~~~  305 (338)
                      |+|++++.+++++. +++||+ +++++|+.|+++.+.+.+|..  +......+.     ......+|++++++||| .|.
T Consensus       263 Dva~ai~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~k~~~lG~~~~~  339 (357)
T 2x6t_A          263 DVADVNLWFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKG--QIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPF  339 (357)
T ss_dssp             HHHHHHHHHHHHCC-CEEEEESCSCCEEHHHHHHHHHHHHTCC--CCEEECCCGGGTTSCCSBCCCCCHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhcCC-CCeEEecCCCcccHHHHHHHHHHHcCCC--CceecCCCcccccccccccccCHHHHHHcCCCCCC
Confidence            99999999998776 779998 457899999999999998854  111111111     12345678889988999 788


Q ss_pred             ccHHHHHHHHHHHHHHc
Q 040253          306 YSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       306 ~~~~~~i~~~~~~~~~~  322 (338)
                      ++++++|+++++|++++
T Consensus       340 ~~l~e~l~~~~~~~~~~  356 (357)
T 2x6t_A          340 KTVAEGVTEYMAWLNRD  356 (357)
T ss_dssp             CCHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHhhc
Confidence            89999999999999653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=100.00  E-value=1.2e-40  Score=297.50  Aligned_cols=311  Identities=25%  Similarity=0.395  Sum_probs=226.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEE-ecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLW-KADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ++|+||||||+||||++++++|+++|++|++++|+......+........ ..+++++ .+|++|.+++.++++++|+||
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            35899999999999999999999999999999997655443332211000 1468888 899999999999999999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHh-CCCccEEEEecCceeeeccCCC--CCCcCCCCCCchhhhh-----
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKN-AKTVRRLVFTSSAGTLDVEEHR--KPVYDETSWSDLDFVR-----  154 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~~~~~v~~Ss~~v~~~~~~~--~~~~~e~~~~~~~~~~-----  154 (338)
                      |+|+.....  ......++.|+.++.++++++.. .+ +++|||+||.++|+.....  ..+++|++|.......     
T Consensus        89 h~A~~~~~~--~~~~~~~~~n~~g~~~ll~~~~~~~~-~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  165 (342)
T 1y1p_A           89 HIASVVSFS--NKYDEVVTPAIGGTLNALRAAAATPS-VKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLP  165 (342)
T ss_dssp             ECCCCCSCC--SCHHHHHHHHHHHHHHHHHHHHTCTT-CCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSC
T ss_pred             EeCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhCCC-CcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcccc
Confidence            999976532  23457899999999999999985 45 7899999999998632211  2578888765432110     


Q ss_pred             --hccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCCh-hHHHhh-hhcccCCCC-CCCCCCCc
Q 040253          155 --SVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPP-SLITAL-SPITRNEAH-YPIIKQGQ  227 (338)
Q Consensus       155 --~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~-~~~~~~~~~-~~~~~~~~  227 (338)
                        .+..|.+.|+.+|.++|.+++.+++++  +++++++||+++|||........ .+...+ ....+.... ++.+..++
T Consensus       166 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (342)
T 1y1p_A          166 ESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQY  245 (342)
T ss_dssp             TTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEE
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCccccccCCcCC
Confidence              012356799999999999999998876  78999999999999986543211 221111 222233322 22223468


Q ss_pred             cccHHHHHHHHHHhhcCCCCCC-ceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhh-cCC---
Q 040253          228 FVHLDDLCSAHIFLFEHPNAKG-RYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTD-LGF---  302 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~~~-~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~---  302 (338)
                      |+|++|+|++++.+++++...| .++++++++|+.|+++.+.+.+|...++.....  .......+|++++++ |||   
T Consensus       246 ~v~v~Dva~a~~~~~~~~~~~g~~~~~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lg~~~~  323 (342)
T 1y1p_A          246 YVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPD--QGQDLSKFDTAPSLEILKSLGR  323 (342)
T ss_dssp             EEEHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCC--CCCCCCEECCHHHHHHHHHTTC
T ss_pred             EeEHHHHHHHHHHHHcCcccCCceEEEeCCCCCHHHHHHHHHHHCCCccCCCCCCc--cccccccCChHHHHHHHhhccc
Confidence            9999999999999998765444 455667789999999999999986433332221  112235678899887 777   


Q ss_pred             cccccHHHHHHHHHHHHH
Q 040253          303 KFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       303 ~~~~~~~~~i~~~~~~~~  320 (338)
                      .+..+++++|+++++|++
T Consensus       324 ~~~~~l~~~l~~~~~~~~  341 (342)
T 1y1p_A          324 PGWRSIEESIKDLVGSET  341 (342)
T ss_dssp             CSCCCHHHHHHHHHCCSC
T ss_pred             CCcCCHHHHHHHHHHHhh
Confidence            566689999999998864

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=100.00  E-value=7.6e-41  Score=295.52  Aligned_cols=284  Identities=15%  Similarity=0.153  Sum_probs=192.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi   82 (338)
                      +|+||||||+||||++++++|+++|++|++++|+...              ++  ++.+|++|++++.+++++  +|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--------------~~--~~~~Dl~d~~~~~~~~~~~~~d~vi   65 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR--------------PK--FEQVNLLDSNAVHHIIHDFQPHVIV   65 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC----------------------------------CHHHHHHHCCSEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC--------------CC--eEEecCCCHHHHHHHHHhhCCCEEE
Confidence            5799999999999999999999999999999986542              12  678999999999999874  99999


Q ss_pred             EecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+..... ........+++|+.++.++++++.+.+ + +|||+||.++|+.   ...+++|++         +..|.+
T Consensus        66 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~v~~~---~~~~~~E~~---------~~~~~~  131 (315)
T 2ydy_A           66 HCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG-A-FLIYISSDYVFDG---TNPPYREED---------IPAPLN  131 (315)
T ss_dssp             ECC-------------------CHHHHHHHHHHHHHT-C-EEEEEEEGGGSCS---SSCSBCTTS---------CCCCCS
T ss_pred             ECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEchHHHcCC---CCCCCCCCC---------CCCCcC
Confidence            999965422 233455789999999999999999888 5 9999999999973   456678876         445778


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCC--CCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTS--SMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHI  239 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~  239 (338)
                      .|+.+|..+|.+++.+    +++++++||+.+||+....  .+...+..... ..+..........++++|++|+|++++
T Consensus       132 ~Y~~sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~Dva~a~~  206 (315)
T 2ydy_A          132 LYGKTKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQ-FSNKSANMDHWQQRFPTHVKDVATVCR  206 (315)
T ss_dssp             HHHHHHHHHHHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHH-CCSSCEEEECSSBBCCEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHH-hcCCCeeeccCceECcEEHHHHHHHHH
Confidence            9999999999999764    5788999999999998652  12221211111 023322222223378999999999999


Q ss_pred             HhhcCC----CCCCceEE-ecCCCCHHHHHHHHHHhCCCCCC---CCCC-CC-ccccccccccchhhhhhcCCcccccHH
Q 040253          240 FLFEHP----NAKGRYIC-SSHPATILELAKFLREKYPEFNV---PTEF-ED-VDENMKNMLFSSKKLTDLGFKFKYSLD  309 (338)
Q Consensus       240 ~~l~~~----~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~---~~~~-~~-~~~~~~~~~~~~~~~~~lg~~~~~~~~  309 (338)
                      .+++++    ..+++||+ +++++|+.|+++.+.+.+|....   +... .. .........+|+++++++||+|.++++
T Consensus       207 ~~~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~  286 (315)
T 2ydy_A          207 QLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFR  286 (315)
T ss_dssp             HHHHHHHTCTTCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHTTCCCCCCHH
T ss_pred             HHHHhhccccCCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhcCCCCCCCHH
Confidence            998753    45678988 55889999999999999875321   1110 11 112234567899999888999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 040253          310 DMFTGAVDTCRAKG  323 (338)
Q Consensus       310 ~~i~~~~~~~~~~~  323 (338)
                      ++|+++++|++++.
T Consensus       287 ~~l~~~~~~~~~~~  300 (315)
T 2ydy_A          287 IGIKESLWPFLIDK  300 (315)
T ss_dssp             HHHHHHHGGGCC--
T ss_pred             HHHHHHHHHHccch
Confidence            99999999998763

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=100.00  E-value=1.1e-40  Score=302.27  Aligned_cols=303  Identities=17%  Similarity=0.174  Sum_probs=224.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH--HHHHHHhcCC-CCCC-cEEEEecccCCCCCchhhhCC--cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK--KKVKHLLELP-KAST-HLTLWKADLAEEGNFDEPIRG--CT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~-~~~~-~~~~~~~Dl~d~~~~~~~~~~--~d   79 (338)
                      |+||||||+||||++++++|+++|++|++++|+....  ..++.+.... ...+ +++++.+|++|.+++.+++++  +|
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  108 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD  108 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence            7999999999999999999999999999999976531  0111110000 0012 789999999999999888874  79


Q ss_pred             EEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCcc-----EEEEecCceeeeccCCCCCCcCCCCCCchhhh
Q 040253           80 GVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVR-----RLVFTSSAGTLDVEEHRKPVYDETSWSDLDFV  153 (338)
Q Consensus        80 ~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-----~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~  153 (338)
                      +|||+|+..... ........+++|+.++.++++++...+ ++     +|||+||.++|+.  ... +++|++       
T Consensus       109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~~~~~~~~~v~~SS~~vyg~--~~~-~~~E~~-------  177 (381)
T 1n7h_A          109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT-IDSGRTVKYYQAGSSEMFGS--TPP-PQSETT-------  177 (381)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHH-HHHCCCCEEEEEEEGGGGTT--SCS-SBCTTS-------
T ss_pred             EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhC-CccCCccEEEEeCcHHHhCC--CCC-CCCCCC-------
Confidence            999999965421 112345778999999999999998876 55     9999999999973  223 778876       


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh-hHHHhh-hhcccCCC--CCCCCCC-Ccc
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP-SLITAL-SPITRNEA--HYPIIKQ-GQF  228 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~-~~~  228 (338)
                        +..|.+.|+.+|.++|.+++.++.+++++++++|++++|||+....... .+...+ ....+...  .++.+.. ++|
T Consensus       178 --~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~  255 (381)
T 1n7h_A          178 --PFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDW  255 (381)
T ss_dssp             --CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEEC
T ss_pred             --CCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEeCCCCceeee
Confidence              4457889999999999999999988899999999999999986543221 111111 11223322  2233333 679


Q ss_pred             ccHHHHHHHHHHhhcCCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCC-CCCCCC---ccccccccccchhhhhh-cCC
Q 040253          229 VHLDDLCSAHIFLFEHPNAKGRYICS-SHPATILELAKFLREKYPEFNV-PTEFED---VDENMKNMLFSSKKLTD-LGF  302 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~-lg~  302 (338)
                      +|++|+|++++.+++++. +++||++ ++++|+.|+++.+.+.+|.... ...+..   .+.......+|++++++ |||
T Consensus       256 v~v~Dva~a~~~~~~~~~-~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~  334 (381)
T 1n7h_A          256 GFAGDYVEAMWLMLQQEK-PDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGW  334 (381)
T ss_dssp             EEHHHHHHHHHHHHTSSS-CCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCC
T ss_pred             EEHHHHHHHHHHHHhCCC-CCeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHHhcCC
Confidence            999999999999998765 5789884 5789999999999999985210 011111   12233455679999987 999


Q ss_pred             cccccHHHHHHHHHHHHHHc
Q 040253          303 KFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       303 ~~~~~~~~~i~~~~~~~~~~  322 (338)
                      +|+++++++|+++++|++++
T Consensus       335 ~p~~~l~e~l~~~~~~~~~~  354 (381)
T 1n7h_A          335 KPQVGFEKLVKMMVDEDLEL  354 (381)
T ss_dssp             CCCSCHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhh
Confidence            99989999999999999764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=100.00  E-value=2.4e-41  Score=296.53  Aligned_cols=277  Identities=12%  Similarity=0.039  Sum_probs=212.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~   83 (338)
                      |+||||||+||||++++++|+ +|++|++++|++.                   .+.+|++|.+++.+++++  +|+|||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-------------------~~~~D~~d~~~~~~~~~~~~~d~vih   60 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-------------------EFCGDFSNPKGVAETVRKLRPDVIVN   60 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-------------------SSCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-------------------cccccCCCHHHHHHHHHhcCCCEEEE
Confidence            489999999999999999999 8999999998752                   246899999999998875  999999


Q ss_pred             ecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+.... .........++.|+.++.++++++++.+ + +|||+||.++|+  .....+++|++         +..|.+.
T Consensus        61 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~vy~--~~~~~~~~E~~---------~~~p~~~  127 (299)
T 1n2s_A           61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG-A-WVVHYSTDYVFP--GTGDIPWQETD---------ATSPLNV  127 (299)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT-C-EEEEEEEGGGSC--CCTTCCBCTTS---------CCCCSSH
T ss_pred             CcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEecccEEe--CCCCCCCCCCC---------CCCCccH
Confidence            9996542 1123445789999999999999999988 5 899999999998  44445778887         4457889


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhh-cccCCCCCCCCCCCccccHHHHHHHHHHh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSP-ITRNEAHYPIIKQGQFVHLDDLCSAHIFL  241 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  241 (338)
                      |+.+|.++|.+++.++    .+++++||+++|||+...    .+...... ..+..........++++|++|+|++++.+
T Consensus       128 Y~~sK~~~E~~~~~~~----~~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~  199 (299)
T 1n2s_A          128 YGKTKLAGEKALQDNC----PKHLIFRTSWVYAGKGNN----FAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHA  199 (299)
T ss_dssp             HHHHHHHHHHHHHHHC----SSEEEEEECSEECSSSCC----HHHHHHHHHHHCSEEEEECSCEECCEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC----CCeEEEeeeeecCCCcCc----HHHHHHHHHhcCCCEEeecCcccCCeeHHHHHHHHHHH
Confidence            9999999999997653    489999999999998542    11111111 12322222222337899999999999999


Q ss_pred             hcCC--C--CCCceEEe-cCCCCHHHHHHHHHHhCCCCCC----C-C---C---CCCccccccccccchhhhhh-cCCcc
Q 040253          242 FEHP--N--AKGRYICS-SHPATILELAKFLREKYPEFNV----P-T---E---FEDVDENMKNMLFSSKKLTD-LGFKF  304 (338)
Q Consensus       242 l~~~--~--~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~----~-~---~---~~~~~~~~~~~~~~~~~~~~-lg~~~  304 (338)
                      ++++  .  .+++||++ ++++|++|+++.+.+.+|....    + .   .   +...........+|++++++ |||+|
T Consensus       200 ~~~~~~~~~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p  279 (299)
T 1n2s_A          200 IRVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLIL  279 (299)
T ss_dssp             HHHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCC
T ss_pred             HHHhccccccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCC
Confidence            9875  2  36789985 5789999999999988763210    1 0   0   00111223456789999987 99999


Q ss_pred             cccHHHHHHHHHHHHHHcCC
Q 040253          305 KYSLDDMFTGAVDTCRAKGL  324 (338)
Q Consensus       305 ~~~~~~~i~~~~~~~~~~~~  324 (338)
                      + +++++|+++++|++++..
T Consensus       280 ~-~~~~~l~~~~~~~~~~~~  298 (299)
T 1n2s_A          280 P-QWELGVKRMLTEMFTTTT  298 (299)
T ss_dssp             C-BHHHHHHHHHHHHHSCCC
T ss_pred             C-CHHHHHHHHHHHHHhcCC
Confidence            8 899999999999987654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=100.00  E-value=9.6e-41  Score=298.23  Aligned_cols=298  Identities=18%  Similarity=0.130  Sum_probs=222.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-------CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-------YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      ++|+||||||+||||++++++|+++|       ++|++++|+......        ....+++++.+|++|++++.++++
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--------~~~~~~~~~~~Dl~d~~~~~~~~~   84 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--------GFSGAVDARAADLSAPGEAEKLVE   84 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--------TCCSEEEEEECCTTSTTHHHHHHH
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--------ccCCceeEEEcCCCCHHHHHHHHh
Confidence            46899999999999999999999999       899999997643211        012578999999999999999884


Q ss_pred             -CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC----CccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           77 -GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK----TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                       ++|+|||+|+.............++.|+.++.++++++.+.+    .+++|||+||.++|+  .....+++|++     
T Consensus        85 ~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~--~~~~~~~~E~~-----  157 (342)
T 2hrz_A           85 ARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFG--APLPYPIPDEF-----  157 (342)
T ss_dssp             TCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCC--SSCCSSBCTTC-----
T ss_pred             cCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhC--CCCCCCcCCCC-----
Confidence             899999999965421122345778999999999999998754    268999999999997  33345788887     


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeC-CCCCCCCCh-hHHHhhh-hcccCCCCCC-CCCC-C
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVG-PFLTSSMPP-SLITALS-PITRNEAHYP-IIKQ-G  226 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G-~~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~-~  226 (338)
                          +..|.+.|+.+|.++|.+++.++++++++++++|++.+|| |+....... .+...+. ...+....++ .+.. .
T Consensus       158 ----~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (342)
T 2hrz_A          158 ----HTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLPVPESIRH  233 (342)
T ss_dssp             ----CCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEE
T ss_pred             ----CCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeeccCCCccce
Confidence                4457789999999999999999988889999999999998 764322111 1222221 2223332222 2222 4


Q ss_pred             ccccHHHHHHHHHHhhcCCC----CCCceEEecCCCCHHHHHHHHHHhCCCCCC-CCCCCCcc--cc---ccccccchhh
Q 040253          227 QFVHLDDLCSAHIFLFEHPN----AKGRYICSSHPATILELAKFLREKYPEFNV-PTEFEDVD--EN---MKNMLFSSKK  296 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~----~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~-~~~~~~~~--~~---~~~~~~~~~~  296 (338)
                      +++|++|+|++++.+++.+.    .+++||+++.++|+.|+++.+.+.+|.... .......+  ..   .....+|+++
T Consensus       234 ~~~~v~Dva~~~~~~~~~~~~~~~~~~~~ni~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k  313 (342)
T 2hrz_A          234 WHASPRSAVGFLIHGAMIDVEKVGPRRNLSMPGLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEGWAPGFEAKR  313 (342)
T ss_dssp             EEECHHHHHHHHHHHHHSCHHHHCSCCEEECCCEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTTSCCCBCCHH
T ss_pred             eeEehHHHHHHHHHHHhccccccCCccEEEcCCCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcccccccChHH
Confidence            58999999999999998754    356899977789999999999998874210 01111111  01   1112478899


Q ss_pred             hhhcCCcccccHHHHHHHHHHHHH
Q 040253          297 LTDLGFKFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       297 ~~~lg~~~~~~~~~~i~~~~~~~~  320 (338)
                      +++|||+|+++++++|+++++|++
T Consensus       314 ~~~lG~~p~~~l~e~l~~~~~~~~  337 (342)
T 2hrz_A          314 ARELGFTAESSFEEIIQVHIEDEL  337 (342)
T ss_dssp             HHHTTCCCCSSHHHHHHHHHHHHS
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHhc
Confidence            888999999999999999999997

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=100.00  E-value=1e-39  Score=317.40  Aligned_cols=308  Identities=17%  Similarity=0.201  Sum_probs=224.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH-HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK-KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      ++|+||||||+||||++++++|+++|++|++++|+.... .....+....  ..+++++.+|++|++++.++++  ++|+
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~v~~v~~Dl~d~~~l~~~~~~~~~D~   87 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLT--KHHIPFYEVDLCDRKGLEKVFKEYKIDS   87 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHH--TSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhcc--CCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence            458999999999999999999999999999999975432 1111111100  1468899999999999999888  8999


Q ss_pred             EEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccC--CCCCCcCCCCCCchhhhhhcc
Q 040253           81 VFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEE--HRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        81 vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~--~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      |||+|+..... ......+.+++|+.++.++++++++.+ +++|||+||.++|+...  ....+++|++         +.
T Consensus        88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~-~~~iV~~SS~~vyg~~~~~~~~~~~~E~~---------~~  157 (699)
T 1z45_A           88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-VSKFVFSSSATVYGDATRFPNMIPIPEEC---------PL  157 (699)
T ss_dssp             EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCCGGGSTTCCSBCTTS---------CC
T ss_pred             EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECcHHHhCCCccccccCCccccC---------CC
Confidence            99999965421 111234678999999999999999888 88999999999997322  1124566665         34


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHH--cCccEEEEcCCceeCCCCCCC-------CChhH-HHhhhhccc--CCC-CCC---
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEE--NNIDFISIIPSLVVGPFLTSS-------MPPSL-ITALSPITR--NEA-HYP---  221 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~-------~~~~~-~~~~~~~~~--~~~-~~~---  221 (338)
                      .|.+.|+.+|.++|.+++.++++  .+++++++||+++||++....       ....+ ..+.....+  ... .++   
T Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  237 (699)
T 1z45_A          158 GPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDY  237 (699)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC----
T ss_pred             CCCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcc
Confidence            57789999999999999998877  699999999999999864321       01112 112222222  222 222   


Q ss_pred             ---CCCC-CccccHHHHHHHHHHhhcCC-------CCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCC-Ccccccc
Q 040253          222 ---IIKQ-GQFVHLDDLCSAHIFLFEHP-------NAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFE-DVDENMK  288 (338)
Q Consensus       222 ---~~~~-~~~i~v~D~a~~~~~~l~~~-------~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~  288 (338)
                         .+.. ++|||++|+|++++.+++..       ..+++||+ +++++|+.|+++.+++.+|. +.+.... .......
T Consensus       238 ~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~  316 (699)
T 1z45_A          238 DSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGI-DLPYKVTGRRAGDVL  316 (699)
T ss_dssp             --CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTC-CCCC---------CC
T ss_pred             cCCCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCCCcHHHHHHHHHHHhCC-CCCceecCCCCCccc
Confidence               2333 78999999999999998642       12458988 56789999999999998874 3333322 1223345


Q ss_pred             ccccchhhhhh-cCCcccccHHHHHHHHHHHHHHcCC
Q 040253          289 NMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGL  324 (338)
Q Consensus       289 ~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~  324 (338)
                      ...+|++++++ |||+|+++++++|+++++|+++++.
T Consensus       317 ~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~  353 (699)
T 1z45_A          317 NLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPF  353 (699)
T ss_dssp             CCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred             cccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence            66788999986 9999999999999999999988654

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=100.00  E-value=4.2e-39  Score=289.96  Aligned_cols=296  Identities=15%  Similarity=0.140  Sum_probs=222.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-----CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-----YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--   77 (338)
                      +|+|||||||||||++++++|+++|     ++|++++|++....       .  ...+++++.+|++|.+++.+++++  
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-------~--~~~~~~~~~~Dl~d~~~~~~~~~~~~   71 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-------H--EDNPINYVQCDISDPDDSQAKLSPLT   71 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-------C--CSSCCEEEECCTTSHHHHHHHHTTCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-------c--ccCceEEEEeecCCHHHHHHHHhcCC
Confidence            3799999999999999999999999     99999999765432       0  115789999999999999999987  


Q ss_pred             -ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEE-------EecCceeeeccCCCCCCcCCCCC
Q 040253           78 -CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLV-------FTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        78 -~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v-------~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                       +|+|||+|+...    .+....++.|+.++.+++++|++.  + +++||       |+||.++||.......+++|+++
T Consensus        72 ~~d~vih~a~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~  146 (364)
T 2v6g_A           72 DVTHVFYVTWANR----STEQENCEANSKMFRNVLDAVIPNCPN-LKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP  146 (364)
T ss_dssp             TCCEEEECCCCCC----SSHHHHHHHHHHHHHHHHHHHTTTCTT-CCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC
T ss_pred             CCCEEEECCCCCc----chHHHHHHHhHHHHHHHHHHHHHhccc-cceEEeccCceEEEechhhccccccCCCCCCcccc
Confidence             999999999653    234578999999999999999987  5 88998       89999999843333457788863


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcC-ccEEEEcCCceeCCCCCCCCChhHHH-hhhh---cccCCCC-CC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN-IDFISIIPSLVVGPFLTSSMPPSLIT-ALSP---ITRNEAH-YP  221 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~-~~~~---~~~~~~~-~~  221 (338)
                      .        .++.+.|    +.+|+.+++++++++ ++++++||+++|||+........... ....   ..+.+.. ++
T Consensus       147 ~--------~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g  214 (364)
T 2v6g_A          147 R--------LKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTG  214 (364)
T ss_dssp             C--------CSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCCS
T ss_pred             C--------Cccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecCC
Confidence            2        1235567    458999998887777 99999999999999875322211111 1111   1344433 33


Q ss_pred             CC----CCCccccHHHHHHHHHHhhcCCCC-CCceEEe-cCCCCHHHHHHHHHHhCCCCC------CCCCC---------
Q 040253          222 II----KQGQFVHLDDLCSAHIFLFEHPNA-KGRYICS-SHPATILELAKFLREKYPEFN------VPTEF---------  280 (338)
Q Consensus       222 ~~----~~~~~i~v~D~a~~~~~~l~~~~~-~~~~~~~-~~~~t~~e~~~~i~~~~~~~~------~~~~~---------  280 (338)
                      .+    ...++++++|+|++++.+++++.. +++||++ ++++|+.|+++.+.+.+|...      +|...         
T Consensus       215 ~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~  294 (364)
T 2v6g_A          215 CKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEP  294 (364)
T ss_dssp             CHHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCHHHHTTTCHH
T ss_pred             CcccccccCCCCcHHHHHHHHHHHHhCCCCCCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccHHHHHhhhHH
Confidence            32    125688899999999999988753 4589985 567999999999999887432      22110         


Q ss_pred             --------CC-ccc---cc-----------cc-cccchhhhhhcCCcccccHHHHHHHHHHHHHHcCCCC
Q 040253          281 --------ED-VDE---NM-----------KN-MLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGLLP  326 (338)
Q Consensus       281 --------~~-~~~---~~-----------~~-~~~~~~~~~~lg~~~~~~~~~~i~~~~~~~~~~~~~~  326 (338)
                              .+ .+.   ..           .. ..+|++++++|||+|.++++++|+++++|++++|.+|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~~~~~~~g~lp  364 (364)
T 2v6g_A          295 VWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYKIVP  364 (364)
T ss_dssp             HHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHhcCCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence                    00 011   11           23 4788899988999999899999999999999999875

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=100.00  E-value=1.1e-39  Score=314.88  Aligned_cols=309  Identities=19%  Similarity=0.286  Sum_probs=227.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC-chhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN-FDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~d~v   81 (338)
                      ++|+||||||+||||++++++|+++ |++|++++|+......+   .    ...+++++.+|++|.++ +.++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~---~----~~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRF---L----NHPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGG---T----TCTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhh---c----cCCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            4689999999999999999999998 89999999987543221   1    12578999999999765 67788899999


Q ss_pred             EEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      ||+|+..... ...+....++.|+.++.++++++.+.+  ++|||+||.++|+  .....+++|+++...  ..+...|.
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~vyg--~~~~~~~~E~~~~~~--~~p~~~p~  460 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYG--MCSDKYFDEDHSNLI--VGPVNKPR  460 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGB--TCCSSSBCTTTCCEE--ECCTTCTT
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEecHHHcC--CCCCcccCCCccccc--cCcccCCC
Confidence            9999865421 112345788999999999999999887  7999999999998  334456778764321  01122467


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC------CChhHHHhh-hhcccCCC-CCCCCCC-CccccH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS------MPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHL  231 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~------~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v  231 (338)
                      +.|+.+|.++|.+++.+++++|++++++||+++|||+....      ....+...+ ....+.+. .++.+.. ++|+|+
T Consensus       461 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v  540 (660)
T 1z7e_A          461 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDI  540 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEH
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEH
Confidence            79999999999999999888899999999999999986420      011111111 12223332 2223322 689999


Q ss_pred             HHHHHHHHHhhcCCC---CCCceEEec-C-CCCHHHHHHHHHHhCCCCCCCCCCCCc---------------cccccccc
Q 040253          232 DDLCSAHIFLFEHPN---AKGRYICSS-H-PATILELAKFLREKYPEFNVPTEFEDV---------------DENMKNML  291 (338)
Q Consensus       232 ~D~a~~~~~~l~~~~---~~~~~~~~~-~-~~t~~e~~~~i~~~~~~~~~~~~~~~~---------------~~~~~~~~  291 (338)
                      +|+|++++.+++.+.   .+++||+++ + ++|+.|+++.+.+.+|.......++..               ........
T Consensus       541 ~Dva~ai~~~l~~~~~~~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  620 (660)
T 1z7e_A          541 RDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRK  620 (660)
T ss_dssp             HHHHHHHHHHHHCGGGTTTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSCCC
T ss_pred             HHHHHHHHHHHhCccccCCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccccccccccchhhcc
Confidence            999999999998764   355899865 4 799999999999887642211111110               01223456


Q ss_pred             cchhhhhh-cCCcccccHHHHHHHHHHHHHHcCCC
Q 040253          292 FSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAKGLL  325 (338)
Q Consensus       292 ~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~~~  325 (338)
                      .|++++++ |||+|+++++++|+++++|++++..+
T Consensus       621 ~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~~  655 (660)
T 1z7e_A          621 PSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL  655 (660)
T ss_dssp             BCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSCC
T ss_pred             cCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhccc
Confidence            78999987 99999999999999999999987643

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=100.00  E-value=4.1e-40  Score=287.73  Aligned_cols=271  Identities=14%  Similarity=0.074  Sum_probs=208.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      ..|+|||||||||||++++++|+++|++|++++|+                       .+|++|.+++.++++  ++|+|
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~-----------------------~~Dl~d~~~~~~~~~~~~~d~v   67 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ-----------------------DLDITNVLAVNKFFNEKKPNVV   67 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT-----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc-----------------------cCCCCCHHHHHHHHHhcCCCEE
Confidence            46899999999999999999999999999999885                       269999999999888  89999


Q ss_pred             EEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      ||+|+..... ........++.|+.++.++++++++.+ + +|||+||.++|+  .....+++|++         +..|.
T Consensus        68 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~-~-~iv~~SS~~v~~--~~~~~~~~E~~---------~~~~~  134 (292)
T 1vl0_A           68 INCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG-A-EIVQISTDYVFD--GEAKEPITEFD---------EVNPQ  134 (292)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT-C-EEEEEEEGGGSC--SCCSSCBCTTS---------CCCCC
T ss_pred             EECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEechHHeEC--CCCCCCCCCCC---------CCCCc
Confidence            9999965421 112345789999999999999999988 6 999999999997  33445778887         44577


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  240 (338)
                      +.|+.+|..+|.+++.+    +.+++++||+.+||| .. .+...+..  ....+..........++++|++|+|++++.
T Consensus       135 ~~Y~~sK~~~E~~~~~~----~~~~~~lR~~~v~G~-~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~  206 (292)
T 1vl0_A          135 SAYGKTKLEGENFVKAL----NPKYYIVRTAWLYGD-GN-NFVKTMIN--LGKTHDELKVVHDQVGTPTSTVDLARVVLK  206 (292)
T ss_dssp             SHHHHHHHHHHHHHHHH----CSSEEEEEECSEESS-SS-CHHHHHHH--HHHHCSEEEEESSCEECCEEHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhh----CCCeEEEeeeeeeCC-Cc-ChHHHHHH--HHhcCCcEEeecCeeeCCccHHHHHHHHHH
Confidence            89999999999999765    457999999999999 22 21111111  111122221222233789999999999999


Q ss_pred             hhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCC----CCCCCC-Cccccccccccchhhhhh-cCCcccccHHHHHH
Q 040253          241 LFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFN----VPTEFE-DVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFT  313 (338)
Q Consensus       241 ~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~  313 (338)
                      +++++ .+++||+ +++++|+.|+++.+.+.+|...    +|.... ..........+|++++++ |||+|+ +++++|+
T Consensus       207 ~~~~~-~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~  284 (292)
T 1vl0_A          207 VIDEK-NYGTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLK  284 (292)
T ss_dssp             HHHHT-CCEEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHH
T ss_pred             HHhcC-CCcEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCC-CHHHHHH
Confidence            99876 6778988 4578999999999999987421    111111 111233456789999988 999999 9999999


Q ss_pred             HHHHHHH
Q 040253          314 GAVDTCR  320 (338)
Q Consensus       314 ~~~~~~~  320 (338)
                      ++++||+
T Consensus       285 ~~~~~~~  291 (292)
T 1vl0_A          285 EYIDLLQ  291 (292)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999985

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-38  Score=278.04  Aligned_cols=273  Identities=17%  Similarity=0.156  Sum_probs=201.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |||||||||||||++|+++|+++||+|++++|++...              .+   ..|.    ...+.++++|+|||+|
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~--------------~~---~~~~----~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG--------------RI---TWDE----LAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT--------------EE---EHHH----HHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC--------------ee---ecch----hhHhhccCCCEEEEec
Confidence            6899999999999999999999999999999976431              12   1221    1234567899999999


Q ss_pred             ccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           86 TPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        86 ~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      +.....     .......+++.|+.++.+|+++++..+ +..+||+.||.++|+  .....+.+|++         +..|
T Consensus        60 ~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg--~~~~~~~~E~~---------p~~~  128 (298)
T 4b4o_A           60 GENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQ--PSLTAEYDEDS---------PGGD  128 (298)
T ss_dssp             CCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSC--CCSSCCBCTTC---------CCSC
T ss_pred             cCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeec--CCCCCcccccC---------Cccc
Confidence            743211     112234678899999999999998876 355799999999998  55567788887         4456


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCCCCCCCCC-CccccHHHHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEAHYPIIKQ-GQFVHLDDLCSA  237 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~i~v~D~a~~  237 (338)
                      .+.|+..|...|....  ....+++++++||+.+|||+..     .+.... ....+....++.+.+ ++|||++|++++
T Consensus       129 ~~~~~~~~~~~e~~~~--~~~~~~~~~~~r~~~v~g~~~~-----~~~~~~~~~~~~~~~~~g~g~~~~~~ihv~Dva~a  201 (298)
T 4b4o_A          129 FDFFSNLVTKWEAAAR--LPGDSTRQVVVRSGVVLGRGGG-----AMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGI  201 (298)
T ss_dssp             SSHHHHHHHHHHHHHC--CSSSSSEEEEEEECEEECTTSH-----HHHHHHHHHHTTCCCCBTTSCSBCCEEEHHHHHHH
T ss_pred             cchhHHHHHHHHHHHH--hhccCCceeeeeeeeEEcCCCC-----chhHHHHHHhcCCcceecccCceeecCcHHHHHHH
Confidence            7788888887776432  2445899999999999999742     121111 112344445555555 789999999999


Q ss_pred             HHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCcc-----c------cccccccchhhhhhcCCccc
Q 040253          238 HIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVD-----E------NMKNMLFSSKKLTDLGFKFK  305 (338)
Q Consensus       238 ~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~lg~~~~  305 (338)
                      +..+++++...|+||+ +++++|++|+++.+++.+|+. ....++.+.     .      ...+...++++++++||+|+
T Consensus       202 ~~~~~~~~~~~g~yn~~~~~~~t~~e~~~~ia~~lgrp-~~~pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~~~Gf~f~  280 (298)
T 4b4o_A          202 LTHALEANHVHGVLNGVAPSSATNAEFAQTFGAALGRR-AFIPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTLATGYQYS  280 (298)
T ss_dssp             HHHHHHCTTCCEEEEESCSCCCBHHHHHHHHHHHHTCC-CCCCBCHHHHHHHHCHHHHHHHHCCCCBCCHHHHHTTCCCS
T ss_pred             HHHHHhCCCCCCeEEEECCCccCHHHHHHHHHHHhCcC-CcccCCHHHHHHHhcchhHHHhhCCCEEcHHHHHHCCCCCC
Confidence            9999999888889998 568899999999999998752 222222210     0      01244677889999999999


Q ss_pred             cc-HHHHHHHHHHH
Q 040253          306 YS-LDDMFTGAVDT  318 (338)
Q Consensus       306 ~~-~~~~i~~~~~~  318 (338)
                      ++ ++++|+++++.
T Consensus       281 yp~l~~al~~l~~~  294 (298)
T 4b4o_A          281 FPELGAALKEIAEN  294 (298)
T ss_dssp             CCSHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHh
Confidence            96 99999998873

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=100.00  E-value=1.8e-36  Score=284.32  Aligned_cols=279  Identities=14%  Similarity=0.125  Sum_probs=202.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|+|||||||||||++|+++|+++|++|++++|+....                ..+.+|+.+  .+.+++.++|+|||+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~----------------~~v~~d~~~--~~~~~l~~~D~Vih~  208 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP----------------GKRFWDPLN--PASDLLDGADVLVHL  208 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT----------------TCEECCTTS--CCTTTTTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc----------------cceeecccc--hhHHhcCCCCEEEEC
Confidence            68999999999999999999999999999999987642                225678764  356778899999999


Q ss_pred             cccCCCC--CCCccchhhhhhhHHHHHHHHH-HHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           85 ATPMDFE--SKDPENEVIRPTINGMVSIMRA-CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        85 a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~-~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+.....  .......+++.|+.++.+|+++ ++..+ +++|||+||.++|+.. ....+++|+++         . |.+
T Consensus       209 A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~-~~r~V~~SS~~vyg~~-~~~~~~~E~~~---------~-~~~  276 (516)
T 3oh8_A          209 AGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQ-CTTMISASAVGFYGHD-RGDEILTEESE---------S-GDD  276 (516)
T ss_dssp             CCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSS-CCEEEEEEEGGGGCSE-EEEEEECTTSC---------C-CSS
T ss_pred             CCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEeCcceEecCC-CCCCccCCCCC---------C-CcC
Confidence            9975421  2234456889999999999999 55556 8899999999999721 12346777762         2 677


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhh-cccCCCCCCCCCC-CccccHHHHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSP-ITRNEAHYPIIKQ-GQFVHLDDLCSAHI  239 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~i~v~D~a~~~~  239 (338)
                      .|+.+|...|..+.. +...|++++++||+++|||+..     .+..+... ..+....++.+.+ ++|||++|+|++++
T Consensus       277 ~y~~~~~~~E~~~~~-~~~~gi~~~ilRp~~v~Gp~~~-----~~~~~~~~~~~g~~~~~g~g~~~~~~i~v~Dva~ai~  350 (516)
T 3oh8_A          277 FLAEVCRDWEHATAP-ASDAGKRVAFIRTGVALSGRGG-----MLPLLKTLFSTGLGGKFGDGTSWFSWIAIDDLTDIYY  350 (516)
T ss_dssp             HHHHHHHHHHHTTHH-HHHTTCEEEEEEECEEEBTTBS-----HHHHHHHTTC---CCCCTTSCCEECEEEHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH-HHhCCCCEEEEEeeEEECCCCC-----hHHHHHHHHHhCCCcccCCCCceEceEeHHHHHHHHH
Confidence            899999999987654 4556999999999999999831     12221111 1233334444444 68999999999999


Q ss_pred             HhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCC---CCCCCCCc--------cccccccccchhhhhhcCCccccc
Q 040253          240 FLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFN---VPTEFEDV--------DENMKNMLFSSKKLTDLGFKFKYS  307 (338)
Q Consensus       240 ~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~~~lg~~~~~~  307 (338)
                      .+++++...++||+ +++++|+.|+++.+.+.+|...   +|.+....        .........+++++++|||+|+++
T Consensus       351 ~~l~~~~~~g~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~lG~~~~~~  430 (516)
T 3oh8_A          351 RAIVDAQISGPINAVAPNPVSNADMTKILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALENLSHTFRYT  430 (516)
T ss_dssp             HHHHCTTCCEEEEESCSCCEEHHHHHHHTTC---------------------CCGGGGGGCEEEECCHHHHHTTCCCSCS
T ss_pred             HHHhCcccCCcEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeechHHHHHCCCCCCCC
Confidence            99998877889987 5688999999999999887421   22211110        011224457788888999999998


Q ss_pred             -HHHHHHHHHHHH
Q 040253          308 -LDDMFTGAVDTC  319 (338)
Q Consensus       308 -~~~~i~~~~~~~  319 (338)
                       ++++|+++++..
T Consensus       431 ~l~e~l~~~l~~~  443 (516)
T 3oh8_A          431 DIGAAIAHELGYE  443 (516)
T ss_dssp             SHHHHHHHHHTCC
T ss_pred             CHHHHHHHHhCcc
Confidence             999999998753

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=100.00  E-value=2.3e-36  Score=277.73  Aligned_cols=303  Identities=13%  Similarity=0.140  Sum_probs=213.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcC----------CCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLEL----------PKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|+||||||+||||++++++|++.|++|++++|+.........+...          .....+++++.+|++|++.+. 
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  146 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  146 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC-
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC-
Confidence            368999999999999999999999999999999998743322221110          000157999999999988888 


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeec---cCCCCCCcCCCCCCch
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDV---EEHRKPVYDETSWSDL  150 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~---~~~~~~~~~e~~~~~~  150 (338)
                      .+.++|+|||+|+.....  .+....++.|+.++.++++++.. + .++|||+||.++ |.   ......+++|+++.. 
T Consensus       147 ~~~~~d~Vih~A~~~~~~--~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~~-  220 (427)
T 4f6c_A          147 LPENMDTIIHAGARTDHF--GDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVSTISV-GTYFDIDTEDVTFSEADVYK-  220 (427)
T ss_dssp             CSSCCSEEEECCCCC---------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEEEGGG-GSEECSSCSCCEECTTCSCS-
T ss_pred             CcCCCCEEEECCcccCCC--CCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEECchHh-CCCccCCCCCcccccccccc-
Confidence            778999999999976532  34457899999999999999998 5 789999999998 42   123456778887422 


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChh-----HHHhhhhcccCC-CCCC-CC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPS-----LITALSPITRNE-AHYP-II  223 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~-----~~~~~~~~~~~~-~~~~-~~  223 (338)
                           +..|.+.|+.+|+++|.+++.+++ .|++++++||++|||+.....+...     +...+....... .... ..
T Consensus       221 -----~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (427)
T 4f6c_A          221 -----GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAE  294 (427)
T ss_dssp             -----SCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHT
T ss_pred             -----CCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCcccc
Confidence                 234788999999999999999765 6999999999999999876542211     222222211111 1111 12


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccc-----------------
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDE-----------------  285 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~-----------------  285 (338)
                      ..+++++++|+|++++.++..+..+++||+ +++++|+.|+++.+.+ ++...+  ....+..                 
T Consensus       295 ~~~~~v~v~DvA~ai~~~~~~~~~g~~~~l~~~~~~s~~el~~~i~~-~g~~~~--~~~~~~~~l~~~~~~~~~~~~~~~  371 (427)
T 4f6c_A          295 MPVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKR-KEIELV--SDESFNEILQKQDMYETIGLTSVD  371 (427)
T ss_dssp             CEECCEEHHHHHHHHHHHTTSCCCCSEEEESCSCCEEHHHHHHHHHS-SCCEEE--CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ceEEEeeHHHHHHHHHHHHcCCCCCCEEEecCCCCCcHHHHHHHHHH-cCCccc--CHHHHHHHHHhcCchhhhhhhhcc
Confidence            237899999999999999998776778988 5688999999999998 551111  1111000                 


Q ss_pred             -cccccccchhhh----hhcCCcccccHHHHHHHHHHHHHHc
Q 040253          286 -NMKNMLFSSKKL----TDLGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       286 -~~~~~~~~~~~~----~~lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                       ......+|+++.    +++||.+....++.++++++++++.
T Consensus       372 ~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~  413 (427)
T 4f6c_A          372 REQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI  413 (427)
T ss_dssp             HTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHH
T ss_pred             ccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHH
Confidence             111234555544    4479988855677999999998875

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.4e-36  Score=254.16  Aligned_cols=224  Identities=24%  Similarity=0.290  Sum_probs=173.4

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |+. ||+||||||+||||++++++|+++|++|++++|+++....+         .++++++.+|++|.+++.++++++|+
T Consensus         1 M~~-m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~d~   70 (227)
T 3dhn_A            1 MEK-VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE---------NEHLKVKKADVSSLDEVCEVCKGADA   70 (227)
T ss_dssp             --C-CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC---------CTTEEEECCCTTCHHHHHHHHTTCSE
T ss_pred             CCC-CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc---------cCceEEEEecCCCHHHHHHHhcCCCE
Confidence            554 68999999999999999999999999999999986543211         15799999999999999999999999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |||+|+....    . ...++.|+.++.++++++++.+ +++|||+||.++|+...  .. ..|++         +..|.
T Consensus        71 vi~~a~~~~~----~-~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~~~~~~--~~-~~~~~---------~~~p~  132 (227)
T 3dhn_A           71 VISAFNPGWN----N-PDIYDETIKVYLTIIDGVKKAG-VNRFLMVGGAGSLFIAP--GL-RLMDS---------GEVPE  132 (227)
T ss_dssp             EEECCCC-----------CCSHHHHHHHHHHHHHHHTT-CSEEEEECCSTTSEEET--TE-EGGGT---------TCSCG
T ss_pred             EEEeCcCCCC----C-hhHHHHHHHHHHHHHHHHHHhC-CCEEEEeCChhhccCCC--CC-ccccC---------CcchH
Confidence            9999986421    1 2478899999999999999998 89999999998876322  11 22222         34577


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  240 (338)
                      +.|+.+|..+|.+++.++++++++++++||+.+||++.......         .+....+..+..++++|++|+|++++.
T Consensus       133 ~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~Dva~ai~~  203 (227)
T 3dhn_A          133 NILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYR---------LGKDDMIVDIVGNSHISVEDYAAAMID  203 (227)
T ss_dssp             GGHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCCCE---------EESSBCCCCTTSCCEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCcccccee---------ecCCCcccCCCCCcEEeHHHHHHHHHH
Confidence            89999999999999998877899999999999999986543211         122222223333889999999999999


Q ss_pred             hhcCCCC-CCceEE-ecCCCCHH
Q 040253          241 LFEHPNA-KGRYIC-SSHPATIL  261 (338)
Q Consensus       241 ~l~~~~~-~~~~~~-~~~~~t~~  261 (338)
                      +++++.. +++|++ ++++.++.
T Consensus       204 ~l~~~~~~g~~~~~~~~~~~~~~  226 (227)
T 3dhn_A          204 ELEHPKHHQERFTIGYLEHHHHH  226 (227)
T ss_dssp             HHHSCCCCSEEEEEECCSCCC--
T ss_pred             HHhCccccCcEEEEEeehhcccC
Confidence            9999875 457876 56777775

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=100.00  E-value=7.5e-36  Score=280.03  Aligned_cols=304  Identities=13%  Similarity=0.139  Sum_probs=215.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcC----------CCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLEL----------PKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|+|||||||||||++++++|.+.|++|++++|+.........+...          ....++++++.+|+.|++.+. 
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-  227 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-  227 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence            368999999999999999999988899999999988743332221110          001258999999999988888 


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee--eeccCCCCCCcCCCCCCchh
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT--LDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v--~~~~~~~~~~~~e~~~~~~~  151 (338)
                      +..++|+|||+|+....  ..+...+++.|+.++.+++++|.+ + .++|||+||.++  |........+++|+++..  
T Consensus       228 ~~~~~D~Vih~Aa~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~-~-~~~~v~iSS~~vG~~~~~~~~~~~~~E~~~~~--  301 (508)
T 4f6l_B          228 LPENMDTIIHAGARTDH--FGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVSTISVGTYFDIDTEDVTFSEADVYK--  301 (508)
T ss_dssp             CSSCCSEEEECCCC----------CCHHHHHHHHHHHHHHHHT-T-TCEEEEEEESCTTSEECTTCSCCEECTTCSCS--
T ss_pred             CccCCCEEEECCceecC--CCCHHHHhhhHHHHHHHHHHHHHh-C-CCcEEEeCChhhccCCccCCcCcccccccccc--
Confidence            77899999999997653  234457899999999999999998 5 689999999999  322223456778887422  


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-----hhHHHhhhhcccCC-CCCCC-CC
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-----PSLITALSPITRNE-AHYPI-IK  224 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~-~~  224 (338)
                          ...|.+.|+.+|+.+|.+++.+++ .|++++++||++|||+...+.+.     ..+...+....... ..... ..
T Consensus       302 ----~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~  376 (508)
T 4f6l_B          302 ----GQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEM  376 (508)
T ss_dssp             ----SBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGS
T ss_pred             ----cccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCc
Confidence                234788999999999999999765 69999999999999998665421     11222222221221 11222 22


Q ss_pred             CCccccHHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCcc------------------c
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVD------------------E  285 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~------------------~  285 (338)
                      .++|+|++|+|++++.++..+..+++||+ +++++|+.|+++.+.+.. ...++  ...+.                  .
T Consensus       377 ~~~~v~v~DvA~ai~~~~~~~~~~~~~nl~~~~~~s~~el~~~i~~~~-~~~~~--~~~w~~~l~~~~~~~~~~~~~~~~  453 (508)
T 4f6l_B          377 PVDFSFVDTTARQIVALAQVNTPQIIYHVLSPNKMPVKSLLECVKRKE-IELVS--DESFNEILQKQDMYETIGLTSVDR  453 (508)
T ss_dssp             EEECEEHHHHHHHHHHHTTBCCSCSEEEESCSCEEEHHHHHHHHHSSC-CEEEC--HHHHHHHHHTTCCHHHHHHHHTGG
T ss_pred             eEEEEcHHHHHHHHHHHHhCCCCCCEEEeCCCCCCCHHHHHHHHHHcC-CcccC--HHHHHHHHHhcCCccchhcccccc
Confidence            37899999999999999998776779988 567899999999999753 11111  00000                  0


Q ss_pred             cccccccchhh----hhhcCCcccccHHHHHHHHHHHHHHc
Q 040253          286 NMKNMLFSSKK----LTDLGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       286 ~~~~~~~~~~~----~~~lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ......+|+++    ++++||.+....++.++++++++++.
T Consensus       454 ~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~  494 (508)
T 4f6l_B          454 EQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI  494 (508)
T ss_dssp             GSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHH
T ss_pred             cCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence            11233455544    34579988866788899999988775

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=6.7e-35  Score=271.13  Aligned_cols=261  Identities=16%  Similarity=0.139  Sum_probs=191.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC---CCeEEEEEcCCCcHHHHHHHhcCCCC-------------CCcEEEEecccCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER---GYAVRATVRDPDNKKKVKHLLELPKA-------------STHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~d   67 (338)
                      .+|+|||||||||||++++++|++.   |++|++++|+.........+......             ..+++++.+|+++
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~~  151 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSE  151 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTTS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECCC
Confidence            4789999999999999999999998   89999999988765444433221111             1589999999984


Q ss_pred             ------CCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCC
Q 040253           68 ------EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        68 ------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                            .+.+.++++++|+|||+|+....   .+..+.++.|+.++.+++++|.+.+ +++|||+||.++|+  .....+
T Consensus       152 ~~~gld~~~~~~~~~~~D~Vih~Aa~~~~---~~~~~~~~~Nv~gt~~ll~aa~~~~-~~~~V~iSS~~v~~--~~~~~~  225 (478)
T 4dqv_A          152 PDLGLDQPMWRRLAETVDLIVDSAAMVNA---FPYHELFGPNVAGTAELIRIALTTK-LKPFTYVSTADVGA--AIEPSA  225 (478)
T ss_dssp             GGGGCCHHHHHHHHHHCCEEEECCSSCSB---SSCCEEHHHHHHHHHHHHHHHTSSS-CCCEEEEEEGGGGT--TSCTTT
T ss_pred             cccCCCHHHHHHHHcCCCEEEECccccCC---cCHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEEeehhhcC--ccCCCC
Confidence                  45677788899999999998765   3445789999999999999999988 88999999999997  444556


Q ss_pred             cCCCCCCchhhh--hhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC---CChhHHHhhhhc--c
Q 040253          142 YDETSWSDLDFV--RSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS---MPPSLITALSPI--T  214 (338)
Q Consensus       142 ~~e~~~~~~~~~--~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~--~  214 (338)
                      ++|+++......  .......+.|+.+|+.+|.+++.++++.|++++++||++|||+.....   ....+...+...  .
T Consensus       226 ~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~  305 (478)
T 4dqv_A          226 FTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMAT  305 (478)
T ss_dssp             CCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHH
T ss_pred             cCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHc
Confidence            777763211000  000012356999999999999999988899999999999999864221   222222222111  1


Q ss_pred             cC-CCCCC----C----CCCCccccHHHHHHHHHHhhcC----C-CCCCceEEe-cCC--CCHHHHHHHHHHh
Q 040253          215 RN-EAHYP----I----IKQGQFVHLDDLCSAHIFLFEH----P-NAKGRYICS-SHP--ATILELAKFLREK  270 (338)
Q Consensus       215 ~~-~~~~~----~----~~~~~~i~v~D~a~~~~~~l~~----~-~~~~~~~~~-~~~--~t~~e~~~~i~~~  270 (338)
                      +. +..+.    .    ...++++|++|+|++++.++.+    + ..+++||++ +++  +|+.|+++.+.+.
T Consensus       306 g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~~s~~el~~~l~~~  378 (478)
T 4dqv_A          306 GIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVDWLIEA  378 (478)
T ss_dssp             CEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSSCSHHHHHHHHHHT
T ss_pred             CcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCCcCHHHHHHHHHHc
Confidence            21 11111    1    1236899999999999999875    2 335689984 565  9999999999985

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.8e-35  Score=254.55  Aligned_cols=263  Identities=21%  Similarity=0.160  Sum_probs=196.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--ccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~   83 (338)
                      |+||||||+||||++++++|++ |++|++++|++...             ++   +.+|++|++++.+++++  +|+|||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~-------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~   63 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ-------------GG---YKLDLTDFPRLEDFIIKKRPDVIIN   63 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT-------------TC---EECCTTSHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC-------------CC---ceeccCCHHHHHHHHHhcCCCEEEE
Confidence            4899999999999999999994 89999999986421             12   78999999999998875  999999


Q ss_pred             ecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+..... ........++.|+.++.++++++.+.+ . +|||+||.++|+..   ..+++|++         +..|.+.
T Consensus        64 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~iv~~SS~~~~~~~---~~~~~e~~---------~~~~~~~  129 (273)
T 2ggs_A           64 AAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID-S-YIVHISTDYVFDGE---KGNYKEED---------IPNPINY  129 (273)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEEEEGGGSCSS---SCSBCTTS---------CCCCSSH
T ss_pred             CCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC-C-eEEEEecceeEcCC---CCCcCCCC---------CCCCCCH
Confidence            99965421 112345788999999999999999887 5 89999999999622   23677776         4457789


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLF  242 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  242 (338)
                      |+.+|.++|.+++.      ++++++||+.+||+.   .+...+..  ....+........ .++++|++|+|++++.++
T Consensus       130 Y~~sK~~~e~~~~~------~~~~~iR~~~v~G~~---~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~dva~~i~~~~  197 (273)
T 2ggs_A          130 YGLSKLLGETFALQ------DDSLIIRTSGIFRNK---GFPIYVYK--TLKEGKTVFAFKG-YYSPISARKLASAILELL  197 (273)
T ss_dssp             HHHHHHHHHHHHCC------TTCEEEEECCCBSSS---SHHHHHHH--HHHTTCCEEEESC-EECCCBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC------CCeEEEecccccccc---HHHHHHHH--HHHcCCCEEeecC-CCCceEHHHHHHHHHHHH
Confidence            99999999998864      678999999999821   11111111  1112222221122 468999999999999999


Q ss_pred             cCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCC---CCCCCC-ccccccccccchhhhhh-cCCcc-cccHHHHH
Q 040253          243 EHPNAKGRYICSSHPATILELAKFLREKYPEFNV---PTEFED-VDENMKNMLFSSKKLTD-LGFKF-KYSLDDMF  312 (338)
Q Consensus       243 ~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~-lg~~~-~~~~~~~i  312 (338)
                      +++. .++||++++.+|+.|+++.+.+.+|....   +..... .+.......+|++++++ |||+| .++++++|
T Consensus       198 ~~~~-~g~~~i~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~  272 (273)
T 2ggs_A          198 ELRK-TGIIHVAGERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV  272 (273)
T ss_dssp             HHTC-CEEEECCCCCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred             hcCc-CCeEEECCCcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence            8764 56899866889999999999999975311   111101 12233456789999998 99999 67788764

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=100.00  E-value=1e-34  Score=250.22  Aligned_cols=236  Identities=20%  Similarity=0.205  Sum_probs=187.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||+||||||+||||++++++|+++|++|++++|++....        .   .+++++.+|++|++.+.++++++|+|||+
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~---~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   70 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA--------E---AHEEIVACDLADAQAVHDLVKDCDGIIHL   70 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC--------C---TTEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc--------C---CCccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence            679999999999999999999999999999999765311        0   36799999999999999999999999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHH
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      |+...   .......++.|+.++.++++++.+.+ +++|||+||.++|+... ...+++|++         +..|.+.|+
T Consensus        71 a~~~~---~~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~~~-~~~~~~E~~---------~~~~~~~Y~  136 (267)
T 3ay3_A           71 GGVSV---ERPWNDILQANIIGAYNLYEAARNLG-KPRIVFASSNHTIGYYP-RTTRIDTEV---------PRRPDSLYG  136 (267)
T ss_dssp             CSCCS---CCCHHHHHHHTHHHHHHHHHHHHHTT-CCEEEEEEEGGGSTTSB-TTSCBCTTS---------CCCCCSHHH
T ss_pred             CcCCC---CCCHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEeCCHHHhCCCC-CCCCCCCCC---------CCCCCChHH
Confidence            99652   23345788999999999999999888 88999999999997322 245677876         445778999


Q ss_pred             HHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .+|..+|.+++.++++++++++++||+.+|+...    .           +       ...++++|++|+|+++..++++
T Consensus       137 ~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~~----~-----------~-------~~~~~~~~~~dva~~~~~~~~~  194 (267)
T 3ay3_A          137 LSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPK----D-----------A-------RMMATWLSVDDFMRLMKRAFVA  194 (267)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCEEEEEECBCSSSCC----S-----------H-------HHHHHBCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeceeecCCCC----C-----------C-------CeeeccccHHHHHHHHHHHHhC
Confidence            9999999999998888899999999999984210    0           0       0015799999999999999988


Q ss_pred             CCC-CCceEEecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhcCCcccccHHHHHHHHHH
Q 040253          245 PNA-KGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVD  317 (338)
Q Consensus       245 ~~~-~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~~~  317 (338)
                      +.. .++|++.+..                              .....+..+++.+||+|+++++++++++.+
T Consensus       195 ~~~~~~~~~~~~~~------------------------------~~~~~d~~~~~~lg~~p~~~~~~~~~~~~~  238 (267)
T 3ay3_A          195 PKLGCTVVYGASAN------------------------------TESWWDNDKSAFLGWVPQDSSEIWREEIEQ  238 (267)
T ss_dssp             SCCCEEEEEECCSC------------------------------SSCCBCCGGGGGGCCCCCCCGGGGHHHHHH
T ss_pred             CCCCceeEecCCCc------------------------------cccccCHHHHHHcCCCCCCCHHHHHHHHHh
Confidence            654 3456653211                              112344555555999999999999988754

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=100.00  E-value=3.6e-34  Score=249.37  Aligned_cols=256  Identities=19%  Similarity=0.227  Sum_probs=192.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      |+|||||||||||++++++|+++  |++|++++|++.....+..        .+++++.+|++|++++.++++++|+|||
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~--------~~~~~~~~D~~d~~~l~~~~~~~d~vi~   72 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLAD--------QGVEVRHGDYNQPESLQKAFAGVSKLLF   72 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHH--------TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhh--------cCCeEEEeccCCHHHHHHHHhcCCEEEE
Confidence            57999999999999999999998  9999999998766544322        4689999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      +|+..      .. .  +.|+.++.++++++++.+ +++|||+||.+++.            .            | ..|
T Consensus        73 ~a~~~------~~-~--~~n~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~------------~------------~-~~y  117 (287)
T 2jl1_A           73 ISGPH------YD-N--TLLIVQHANVVKAARDAG-VKHIAYTGYAFAEE------------S------------I-IPL  117 (287)
T ss_dssp             CCCCC------SC-H--HHHHHHHHHHHHHHHHTT-CSEEEEEEETTGGG------------C------------C-STH
T ss_pred             cCCCC------cC-c--hHHHHHHHHHHHHHHHcC-CCEEEEECCCCCCC------------C------------C-Cch
Confidence            99852      11 1  579999999999999988 89999999987752            0            1 279


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhc
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~  243 (338)
                      +.+|..+|.+++    ++|++++++||+.++|+...    ..+.....  .+..........++++|++|+|++++.+++
T Consensus       118 ~~~K~~~E~~~~----~~~~~~~ilrp~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~  187 (287)
T 2jl1_A          118 AHVHLATEYAIR----TTNIPYTFLRNALYTDFFVN----EGLRASTE--SGAIVTNAGSGIVNSVTRNELALAAATVLT  187 (287)
T ss_dssp             HHHHHHHHHHHH----HTTCCEEEEEECCBHHHHSS----GGGHHHHH--HTEEEESCTTCCBCCBCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH----HcCCCeEEEECCEeccccch----hhHHHHhh--CCceeccCCCCccCccCHHHHHHHHHHHhc
Confidence            999999999885    36999999999998886421    12221111  121111112233789999999999999998


Q ss_pred             CCCC-CCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCC-CC-----------Cccccc-------------cccccchhh
Q 040253          244 HPNA-KGRYICS-SHPATILELAKFLREKYPEFNVPTE-FE-----------DVDENM-------------KNMLFSSKK  296 (338)
Q Consensus       244 ~~~~-~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~-~~-----------~~~~~~-------------~~~~~~~~~  296 (338)
                      ++.. +++||++ ++.+|+.|+++.+.+.+|.. .+.. .+           ..+...             .....|+++
T Consensus       188 ~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (287)
T 2jl1_A          188 EEGHENKTYNLVSNQPWTFDELAQILSEVSGKK-VVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDD  266 (287)
T ss_dssp             SSSCTTEEEEECCSSCBCHHHHHHHHHHHHSSC-CEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSH
T ss_pred             CCCCCCcEEEecCCCcCCHHHHHHHHHHHHCCc-ceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchH
Confidence            7644 4589885 46899999999999998742 2211 11           011100             124557788


Q ss_pred             hhh-cCCcccccHHHHHHHHHH
Q 040253          297 LTD-LGFKFKYSLDDMFTGAVD  317 (338)
Q Consensus       297 ~~~-lg~~~~~~~~~~i~~~~~  317 (338)
                      +++ ||  |.++++++|+++++
T Consensus       267 ~~~~lG--~~~~l~e~l~~~~~  286 (287)
T 2jl1_A          267 LQKLIG--SLTPLKETVKQALK  286 (287)
T ss_dssp             HHHHHS--SCCCHHHHHHHHHT
T ss_pred             HHHHhC--CCCCHHHHHHHHhc
Confidence            887 99  66699999999875

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=100.00  E-value=6.7e-34  Score=253.68  Aligned_cols=234  Identities=15%  Similarity=0.213  Sum_probs=183.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      +|+||||||||+||++++++|++. |+ +|++++|++.+...+.....    ..+++++.+|++|.+++.++++++|+||
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~~~D~Vi   96 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN----DPRMRFFIGDVRDLERLNYALEGVDICI   96 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC----CTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc----CCCEEEEECCCCCHHHHHHHHhcCCEEE
Confidence            589999999999999999999999 97 99999998665544433222    1578999999999999999999999999


Q ss_pred             EecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+||..... ......+.+++|+.++.++++++...+ +++||++||..++.                         |.+
T Consensus        97 h~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~-v~~~V~~SS~~~~~-------------------------p~~  150 (344)
T 2gn4_A           97 HAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNA-ISQVIALSTDKAAN-------------------------PIN  150 (344)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEECCGGGSS-------------------------CCS
T ss_pred             ECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCCccCC-------------------------Ccc
Confidence            999865411 112234789999999999999999998 89999999976552                         456


Q ss_pred             hHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC-CCCCCCCCC-CccccHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN-EAHYPIIKQ-GQFVHLDDLCS  236 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~i~v~D~a~  236 (338)
                      .|+.+|.++|.+++.++++   .|++++++|||++||++..  ....+..  ....+. +..+..+.. ++|+|++|+|+
T Consensus       151 ~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~~--~i~~~~~--~~~~g~~~~~i~~~~~~r~~i~v~D~a~  226 (344)
T 2gn4_A          151 LYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRGS--VVPFFKK--LVQNKASEIPITDIRMTRFWITLDEGVS  226 (344)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTTS--HHHHHHH--HHHHTCCCEEESCTTCEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCCC--HHHHHHH--HHHcCCCceEEeCCCeEEeeEEHHHHHH
Confidence            9999999999999988764   4899999999999998732  1111111  111233 322333333 67999999999


Q ss_pred             HHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCC
Q 040253          237 AHIFLFEHPNAKGRYICSSHPATILELAKFLREKYP  272 (338)
Q Consensus       237 ~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~  272 (338)
                      +++.++++...+++|++++..+|+.|+++.+.+.++
T Consensus       227 ~v~~~l~~~~~g~~~~~~~~~~s~~el~~~i~~~~~  262 (344)
T 2gn4_A          227 FVLKSLKRMHGGEIFVPKIPSMKMTDLAKALAPNTP  262 (344)
T ss_dssp             HHHHHHHHCCSSCEEEECCCEEEHHHHHHHHCTTCC
T ss_pred             HHHHHHhhccCCCEEecCCCcEEHHHHHHHHHHhCC
Confidence            999999886656689987778999999999987653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=100.00  E-value=4e-34  Score=239.28  Aligned_cols=209  Identities=16%  Similarity=0.211  Sum_probs=171.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC-CCCchhhhCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE-EGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~d~vi~~   84 (338)
                      |+||||||+||||++++++|+++|++|++++|+++.....          ++++++.+|++| ++++.++++++|+|||+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY----------NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC----------TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc----------CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            4899999999999999999999999999999986543211          578999999999 99999999999999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHH
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      |+...       ...++.|+.++.++++++++.+ +++||++||.++++.     .+..| .         +..|.+.|+
T Consensus        71 ag~~~-------~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~~-----~~~~e-~---------~~~~~~~Y~  127 (219)
T 3dqp_A           71 SGSGG-------KSLLKVDLYGAVKLMQAAEKAE-VKRFILLSTIFSLQP-----EKWIG-A---------GFDALKDYY  127 (219)
T ss_dssp             CCCTT-------SSCCCCCCHHHHHHHHHHHHTT-CCEEEEECCTTTTCG-----GGCCS-H---------HHHHTHHHH
T ss_pred             CcCCC-------CCcEeEeHHHHHHHHHHHHHhC-CCEEEEECcccccCC-----Ccccc-c---------ccccccHHH
Confidence            99644       2468899999999999999988 899999999877641     23333 2         334678999


Q ss_pred             HHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .+|..+|.+++   +..+++++++||+.+||+.......          .+       ...+++++++|+|++++.++++
T Consensus       128 ~sK~~~e~~~~---~~~~i~~~ilrp~~v~g~~~~~~~~----------~~-------~~~~~~i~~~Dva~~i~~~l~~  187 (219)
T 3dqp_A          128 IAKHFADLYLT---KETNLDYTIIQPGALTEEEATGLID----------IN-------DEVSASNTIGDVADTIKELVMT  187 (219)
T ss_dssp             HHHHHHHHHHH---HSCCCEEEEEEECSEECSCCCSEEE----------ES-------SSCCCCEEHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHH---hccCCcEEEEeCceEecCCCCCccc----------cC-------CCcCCcccHHHHHHHHHHHHhC
Confidence            99999999986   4679999999999999986433211          01       2237899999999999999998


Q ss_pred             CCC-CCceEEecCCCCHHHHHHHH
Q 040253          245 PNA-KGRYICSSHPATILELAKFL  267 (338)
Q Consensus       245 ~~~-~~~~~~~~~~~t~~e~~~~i  267 (338)
                      +.. +++||++++..+++|+.+.-
T Consensus       188 ~~~~g~~~~i~~g~~~~~e~~~~~  211 (219)
T 3dqp_A          188 DHSIGKVISMHNGKTAIKEALESL  211 (219)
T ss_dssp             GGGTTEEEEEEECSEEHHHHHHTT
T ss_pred             ccccCcEEEeCCCCccHHHHHHHH
Confidence            765 45899977779999988753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=100.00  E-value=1.1e-32  Score=233.15  Aligned_cols=214  Identities=17%  Similarity=0.262  Sum_probs=171.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcE-EEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHL-TLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ++|+||||||||+||++++++|+++|++|++++|+++....+..        .++ +++.+|++  +++.+++.++|+||
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~--~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLE--EDFSHAFASIDAVV   89 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTT--SCCGGGGTTCSEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccH--HHHHHHHcCCCEEE
Confidence            46899999999999999999999999999999999877655443        478 99999998  88889999999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      |+|+....   ......+++|+.++.++++++++.+ +++||++||...+.   .      +..         + .+.+.
T Consensus        90 ~~ag~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~-~~~iv~~SS~~~~~---~------~~~---------~-~~~~~  146 (236)
T 3e8x_A           90 FAAGSGPH---TGADKTILIDLWGAIKTIQEAEKRG-IKRFIMVSSVGTVD---P------DQG---------P-MNMRH  146 (236)
T ss_dssp             ECCCCCTT---SCHHHHHHTTTHHHHHHHHHHHHHT-CCEEEEECCTTCSC---G------GGS---------C-GGGHH
T ss_pred             ECCCCCCC---CCccccchhhHHHHHHHHHHHHHcC-CCEEEEEecCCCCC---C------CCC---------h-hhhhh
Confidence            99996542   3456789999999999999999988 89999999954432   1      111         1 25679


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLF  242 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  242 (338)
                      |+.+|..+|.+++    +.|++++++||+.++|+........         ..     ......++++++|+|++++.++
T Consensus       147 Y~~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~~~~~---------~~-----~~~~~~~~i~~~Dva~~~~~~~  208 (236)
T 3e8x_A          147 YLVAKRLADDELK----RSSLDYTIVRPGPLSNEESTGKVTV---------SP-----HFSEITRSITRHDVAKVIAELV  208 (236)
T ss_dssp             HHHHHHHHHHHHH----HSSSEEEEEEECSEECSCCCSEEEE---------ES-----SCSCCCCCEEHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCCeEEe---------cc-----CCCcccCcEeHHHHHHHHHHHh
Confidence            9999999999885    5799999999999999864321100         00     1111268999999999999999


Q ss_pred             cCCCC-CCceEEecCCCCHHHHHHHHH
Q 040253          243 EHPNA-KGRYICSSHPATILELAKFLR  268 (338)
Q Consensus       243 ~~~~~-~~~~~~~~~~~t~~e~~~~i~  268 (338)
                      +++.. +++|++++...++.|+++.++
T Consensus       209 ~~~~~~g~~~~v~~~~~~~~e~~~~i~  235 (236)
T 3e8x_A          209 DQQHTIGKTFEVLNGDTPIAKVVEQLG  235 (236)
T ss_dssp             TCGGGTTEEEEEEECSEEHHHHHHTC-
T ss_pred             cCccccCCeEEEeCCCcCHHHHHHHhc
Confidence            98754 558888666899999998765

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=100.00  E-value=1.1e-33  Score=246.21  Aligned_cols=255  Identities=16%  Similarity=0.197  Sum_probs=185.0

Q ss_pred             EEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            7 TVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|||||||||||++++++|+++  |++|++++|+++....+..        .+++++.+|++|++++.++++++|+|||+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAA--------QGITVRQADYGDEAALTSALQGVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHH--------TTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhc--------CCCeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            5899999999999999999998  9999999998766543332        46899999999999999999999999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHH
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      |+...           ..|+.++.++++++++.+ +++|||+||.++|.            .            | ..|+
T Consensus        73 a~~~~-----------~~~~~~~~~l~~a~~~~~-~~~~v~~Ss~~~~~------------~------------~-~~y~  115 (286)
T 2zcu_A           73 SSSEV-----------GQRAPQHRNVINAAKAAG-VKFIAYTSLLHADT------------S------------P-LGLA  115 (286)
T ss_dssp             C-------------------CHHHHHHHHHHHHT-CCEEEEEEETTTTT------------C------------C-STTH
T ss_pred             CCCCc-----------hHHHHHHHHHHHHHHHcC-CCEEEEECCCCCCC------------C------------c-chhH
Confidence            98421           147889999999999988 89999999987651            0            1 2799


Q ss_pred             HHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC-CCCccccHHHHHHHHHHhhc
Q 040253          165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII-KQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~D~a~~~~~~l~  243 (338)
                      .+|..+|.+++.    .+++++++||+.++++..     ..+.....   +....++.+ ..++++|++|+|++++.+++
T Consensus       116 ~sK~~~e~~~~~----~~~~~~ilrp~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~i~~~Dva~~~~~~~~  183 (286)
T 2zcu_A          116 DEHIETEKMLAD----SGIVYTLLRNGWYSENYL-----ASAPAALE---HGVFIGAAGDGKIASATRADYAAAAARVIS  183 (286)
T ss_dssp             HHHHHHHHHHHH----HCSEEEEEEECCBHHHHH-----TTHHHHHH---HTEEEESCTTCCBCCBCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----cCCCeEEEeChHHhhhhH-----HHhHHhhc---CCceeccCCCCccccccHHHHHHHHHHHhc
Confidence            999999998853    599999999987766431     11111111   111112222 23789999999999999998


Q ss_pred             CCC-CCCceEEec-CCCCHHHHHHHHHHhCCCCCCCCC-CC-----------Cccccc-------------cccccchhh
Q 040253          244 HPN-AKGRYICSS-HPATILELAKFLREKYPEFNVPTE-FE-----------DVDENM-------------KNMLFSSKK  296 (338)
Q Consensus       244 ~~~-~~~~~~~~~-~~~t~~e~~~~i~~~~~~~~~~~~-~~-----------~~~~~~-------------~~~~~~~~~  296 (338)
                      ++. .+++||+++ +.+|+.|+++.+.+.+|.. .+.. .+           ..+...             .....++++
T Consensus       184 ~~~~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (286)
T 2zcu_A          184 EAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQ-VTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKT  262 (286)
T ss_dssp             SSSCTTCEEEECCSSCBCHHHHHHHHHHHHSSC-CEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCH
T ss_pred             CCCCCCceEEEeCCCcCCHHHHHHHHHHHHCCC-CceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchH
Confidence            754 356898855 6899999999999998742 2111 11           011100             124456778


Q ss_pred             hhh-cCCcccccHHHHHHHHHHHHH
Q 040253          297 LTD-LGFKFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       297 ~~~-lg~~~~~~~~~~i~~~~~~~~  320 (338)
                      +++ |||.| ++++++|+++++|+.
T Consensus       263 ~~~~lg~~~-~~~~e~l~~~~~~~~  286 (286)
T 2zcu_A          263 LSKLIGHPT-TTLAESVSHLFNVNN  286 (286)
T ss_dssp             HHHHHTSCC-CCHHHHHHGGGC---
T ss_pred             HHHHhCcCC-CCHHHHHHHHHhhcC
Confidence            877 99854 599999999998863

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=100.00  E-value=2.9e-32  Score=234.74  Aligned_cols=211  Identities=19%  Similarity=0.219  Sum_probs=174.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||+||||||+|+||++++++|+++|++|++++|++....           ..+++++.+|++|.+++.++++++|+|||+
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-----------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-----------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-----------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-----------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            689999999999999999999999999999999875432           157899999999999999999999999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHH
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      ||...   ..+.+..+++|+.++.++++++++.+ .++|||+||.++|+... ...+++|+.         +..|.+.|+
T Consensus        72 Ag~~~---~~~~~~~~~~N~~g~~~l~~a~~~~~-~~~iv~~SS~~~~g~~~-~~~~~~e~~---------~~~~~~~Y~  137 (267)
T 3rft_A           72 GGISV---EKPFEQILQGNIIGLYNLYEAARAHG-QPRIVFASSNHTIGYYP-QTERLGPDV---------PARPDGLYG  137 (267)
T ss_dssp             CSCCS---CCCHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGTTSB-TTSCBCTTS---------CCCCCSHHH
T ss_pred             CCCcC---cCCHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEEcchHHhCCCC-CCCCCCCCC---------CCCCCChHH
Confidence            99743   34556889999999999999999988 88999999999996332 244667766         445778999


Q ss_pred             HHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .+|..+|.+++.++++++++++++||+.++|+...+.                      ...+|++++|+++++..+++.
T Consensus       138 ~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~~~----------------------~~~~~~~~~d~a~~~~~~~~~  195 (267)
T 3rft_A          138 VSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYR----------------------MLSTWFSHDDFVSLIEAVFRA  195 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCSTT----------------------HHHHBCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCCCC----------------------ceeeEEcHHHHHHHHHHHHhC
Confidence            9999999999999989999999999999998732110                      014689999999999999998


Q ss_pred             CCCCC-ceE-EecCCCCHHH
Q 040253          245 PNAKG-RYI-CSSHPATILE  262 (338)
Q Consensus       245 ~~~~~-~~~-~~~~~~t~~e  262 (338)
                      +..++ +++ +++++.++.+
T Consensus       196 ~~~~~~~~~~~s~~~~~~~~  215 (267)
T 3rft_A          196 PVLGCPVVWGASANDAGWWD  215 (267)
T ss_dssp             SCCCSCEEEECCCCTTCCBC
T ss_pred             CCCCceEEEEeCCCCCCccc
Confidence            77654 454 4555554443

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.98  E-value=3.7e-32  Score=245.05  Aligned_cols=211  Identities=16%  Similarity=0.128  Sum_probs=170.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      |+|||||||||||++++++|+++|+ +|++++|+                           .|++++.++++++|+|||+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~---------------------------~d~~~l~~~~~~~d~Vih~   53 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ---------------------------TKEEELESALLKADFIVHL   53 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT---------------------------CCHHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC---------------------------CCHHHHHHHhccCCEEEEC
Confidence            5899999999999999999999998 77776553                           4566677788889999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCcc-EEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR-RLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      |+....   ......++.|+.++.++++++++.+ ++ +|||+||.++|+                          .+.|
T Consensus        54 a~~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~-~~~~~v~~Ss~~~~~--------------------------~~~Y  103 (369)
T 3st7_A           54 AGVNRP---EHDKEFSLGNVSYLDHVLDILTRNT-KKPAILLSSSIQATQ--------------------------DNPY  103 (369)
T ss_dssp             CCSBCT---TCSTTCSSSCCBHHHHHHHHHTTCS-SCCEEEEEEEGGGGS--------------------------CSHH
T ss_pred             CcCCCC---CCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeCchhhcC--------------------------CCCc
Confidence            997653   2334678999999999999999988 65 999999999884                          2489


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhh-hcccCCCCCCCCCC-CccccHHHHHHHHHHh
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALS-PITRNEAHYPIIKQ-GQFVHLDDLCSAHIFL  241 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~i~v~D~a~~~~~~  241 (338)
                      +.+|..+|++++.++++++++++++||+++||++..+.....+..++. ...+....+..+.. ++++|++|+|++++.+
T Consensus       104 ~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~  183 (369)
T 3st7_A          104 GESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVNDRNVELTLNYVDDIVAEIKRA  183 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCSCTTCEEEEEEHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEecCCCeEEEEEEHHHHHHHHHHH
Confidence            999999999999999989999999999999999876543333332222 22344433333333 7899999999999999


Q ss_pred             hcCCCC--CCceEEe-cCCCCHHHHHHHHHHhCCC
Q 040253          242 FEHPNA--KGRYICS-SHPATILELAKFLREKYPE  273 (338)
Q Consensus       242 l~~~~~--~~~~~~~-~~~~t~~e~~~~i~~~~~~  273 (338)
                      ++++..  +++||++ ++.+|+.|+++.+.+.+|.
T Consensus       184 l~~~~~~~~~~~~i~~~~~~s~~e~~~~~~~~~g~  218 (369)
T 3st7_A          184 IEGTPTIENGVPTVPNVFKVTLGEIVDLLYKFKQS  218 (369)
T ss_dssp             HHTCCCEETTEECCSCCEEEEHHHHHHHHHHHHHH
T ss_pred             HhCCcccCCceEEeCCCCceeHHHHHHHHHHHhCC
Confidence            998877  6789885 5789999999999998763

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.97  E-value=3.3e-31  Score=222.21  Aligned_cols=216  Identities=16%  Similarity=0.124  Sum_probs=159.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|||||||||||++++++|+++|++|++++|+++....+   ..     ++++++.+|++|.++  +++.++|+|||+|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~-----~~~~~~~~D~~d~~~--~~~~~~d~vi~~a   70 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR---LG-----ATVATLVKEPLVLTE--ADLDSVDAVVDAL   70 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH---TC-----TTSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc---cC-----CCceEEecccccccH--hhcccCCEEEECC
Confidence            5799999999999999999999999999999986554332   11     578999999999887  7888999999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCC-CCCcCCCCCCchhhhhhccCCCchHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHR-KPVYDETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~-~~~~~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      +....      ......|+.++.++++++++.+  ++||++||.++++..... ..+.+|..         .+.|.+.|+
T Consensus        71 g~~~~------~~~~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~~~~~~~~~~~~~~~~~~---------~~~~~~~y~  133 (224)
T 3h2s_A           71 SVPWG------SGRGYLHLDFATHLVSLLRNSD--TLAVFILGSASLAMPGADHPMILDFPE---------SAASQPWYD  133 (224)
T ss_dssp             CCCTT------SSCTHHHHHHHHHHHHTCTTCC--CEEEEECCGGGSBCTTCSSCGGGGCCG---------GGGGSTTHH
T ss_pred             ccCCC------cchhhHHHHHHHHHHHHHHHcC--CcEEEEecceeeccCCCCccccccCCC---------CCccchhhH
Confidence            97521      1235789999999999999988  799999998666522221 12333332         334578999


Q ss_pred             HHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .+|..+|. +..+.++.+++++++||+.+||++....    +.      .+...........++++++|+|++++.++++
T Consensus       134 ~sK~~~e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~~----~~------~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~  202 (224)
T 3h2s_A          134 GALYQYYE-YQFLQMNANVNWIGISPSEAFPSGPATS----YV------AGKDTLLVGEDGQSHITTGNMALAILDQLEH  202 (224)
T ss_dssp             HHHHHHHH-HHHHTTCTTSCEEEEEECSBCCCCCCCC----EE------EESSBCCCCTTSCCBCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHH-HHHHHhcCCCcEEEEcCccccCCCcccC----ce------ecccccccCCCCCceEeHHHHHHHHHHHhcC
Confidence            99999994 4555556799999999999999854322    10      0111111122336899999999999999998


Q ss_pred             CCC-CCceEEec-CCCC
Q 040253          245 PNA-KGRYICSS-HPAT  259 (338)
Q Consensus       245 ~~~-~~~~~~~~-~~~t  259 (338)
                      +.. +++|++++ ...+
T Consensus       203 ~~~~g~~~~~~~~~~~~  219 (224)
T 3h2s_A          203 PTAIRDRIVVRDADLEH  219 (224)
T ss_dssp             CCCTTSEEEEEECC---
T ss_pred             ccccCCEEEEecCcchh
Confidence            765 55888754 4333

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.97  E-value=8.5e-32  Score=240.64  Aligned_cols=224  Identities=17%  Similarity=0.161  Sum_probs=168.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHH---HHhcCCCCCCcEEEEecccCCCCCchhhhC--Cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVK---HLLELPKASTHLTLWKADLAEEGNFDEPIR--GC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~   78 (338)
                      +|+|||||||||||++++++|++.|++|++++|++.. ..+..   .+..     .+++++.+|++|.+++.++++  ++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~-----~~v~~~~~Dl~d~~~l~~~~~~~~~   84 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALED-----KGAIIVYGLINEQEAMEKILKEHEI   84 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHH-----TTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHh-----CCcEEEEeecCCHHHHHHHHhhCCC
Confidence            4689999999999999999999999999999997622 22222   2221     578999999999999999999  99


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      |+|||+|+.              .|+.++.+++++|++.+++++||+ |   +||  .    ..+|.+         +..
T Consensus        85 d~Vi~~a~~--------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g--~----~~~e~~---------~~~  131 (346)
T 3i6i_A           85 DIVVSTVGG--------------ESILDQIALVKAMKAVGTIKRFLP-S---EFG--H----DVNRAD---------PVE  131 (346)
T ss_dssp             CEEEECCCG--------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCS--S----CTTTCC---------CCT
T ss_pred             CEEEECCch--------------hhHHHHHHHHHHHHHcCCceEEee-c---ccC--C----CCCccC---------cCC
Confidence            999999985              277888999999998876788885 3   454  1    133443         334


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC-CCccccHHHHHHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK-QGQFVHLDDLCSA  237 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~  237 (338)
                      |.+.|+.+|..+|++++.    .|++++++||+.++|...........   .....+....++.+. .++|+|++|+|++
T Consensus       132 p~~~y~~sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~~~~~~~---~~~~~~~~~~~g~g~~~~~~i~~~Dva~~  204 (346)
T 3i6i_A          132 PGLNMYREKRRVRQLVEE----SGIPFTYICCNSIASWPYYNNIHPSE---VLPPTDFFQIYGDGNVKAYFVAGTDIGKF  204 (346)
T ss_dssp             THHHHHHHHHHHHHHHHH----TTCCBEEEECCEESSCCCSCC--------CCCCSSCEEEETTSCCCEEEECHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHH----cCCCEEEEEecccccccCcccccccc---ccCCCceEEEccCCCceEEecCHHHHHHH
Confidence            677999999999998864    69999999999999976432111100   000111112233333 2679999999999


Q ss_pred             HHHhhcCCCC-CCceEEe--cCCCCHHHHHHHHHHhCCC
Q 040253          238 HIFLFEHPNA-KGRYICS--SHPATILELAKFLREKYPE  273 (338)
Q Consensus       238 ~~~~l~~~~~-~~~~~~~--~~~~t~~e~~~~i~~~~~~  273 (338)
                      ++.++..+.. ++.|++.  ++.+|+.|+++.+.+.+|.
T Consensus       205 ~~~~l~~~~~~~~~~~i~g~~~~~s~~e~~~~~~~~~g~  243 (346)
T 3i6i_A          205 TMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIGR  243 (346)
T ss_dssp             HHHHTTCGGGTTEEEECCCGGGEECHHHHHHHHHHHHTS
T ss_pred             HHHHHhCccccCeEEEEeCCCCCCCHHHHHHHHHHHHCC
Confidence            9999998755 4567764  5789999999999999874

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.97  E-value=7e-31  Score=219.69  Aligned_cols=216  Identities=15%  Similarity=0.203  Sum_probs=145.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|||||||||||++++++|+++|++|++++|+++....+.         ++++++.+|++|.++  +++.++|+|||+|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---------~~~~~~~~D~~d~~~--~~~~~~d~vi~~a   69 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---------KDINILQKDIFDLTL--SDLSDQNVVVDAY   69 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---------SSSEEEECCGGGCCH--HHHTTCSEEEECC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---------CCCeEEeccccChhh--hhhcCCCEEEECC
Confidence            58999999999999999999999999999999876544321         478999999999887  7889999999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +...        .....|+.++.++++++++.+ .+++|++||..+++... ...+..|+.         +..|.+.|+.
T Consensus        70 g~~~--------~~~~~~~~~~~~l~~a~~~~~-~~~~v~~SS~~~~~~~~-~~~~~~~~~---------~~~~~~~y~~  130 (221)
T 3ew7_A           70 GISP--------DEAEKHVTSLDHLISVLNGTV-SPRLLVVGGAASLQIDE-DGNTLLESK---------GLREAPYYPT  130 (221)
T ss_dssp             CSST--------TTTTSHHHHHHHHHHHHCSCC-SSEEEEECCCC-----------------------------CCCSCC
T ss_pred             cCCc--------cccchHHHHHHHHHHHHHhcC-CceEEEEecceEEEcCC-CCccccccC---------CCCCHHHHHH
Confidence            9632        125679999999999999988 88999999988775222 122334443         3346678999


Q ss_pred             HHHHHHHHHHHHHH-HcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          166 SKTLAEQAAWKFAE-ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       166 sK~~~E~~~~~~~~-~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      +|..+|.+ ..+.+ +.+++++++||+.+||++.....   +.     ..+...... +...++++++|+|++++.++++
T Consensus       131 ~k~~~e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~~---~~-----~~~~~~~~~-~~~~~~i~~~Dva~~~~~~l~~  200 (221)
T 3ew7_A          131 ARAQAKQL-EHLKSHQAEFSWTYISPSAMFEPGERTGD---YQ-----IGKDHLLFG-SDGNSFISMEDYAIAVLDEIER  200 (221)
T ss_dssp             HHHHHHHH-HHHHTTTTTSCEEEEECSSCCCCC------------------------------CCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHH-HHHHhhccCccEEEEeCcceecCCCccCc---eE-----eccccceec-CCCCceEeHHHHHHHHHHHHhC
Confidence            99999986 33433 67999999999999998432111   00     001111111 1224699999999999999998


Q ss_pred             CCC-CCceEEe-cCCCCHH
Q 040253          245 PNA-KGRYICS-SHPATIL  261 (338)
Q Consensus       245 ~~~-~~~~~~~-~~~~t~~  261 (338)
                      +.. +++||++ +.+.+..
T Consensus       201 ~~~~g~~~~~~~~~~~~~~  219 (221)
T 3ew7_A          201 PNHLNEHFTVAGKLEHHHH  219 (221)
T ss_dssp             CSCTTSEEECCC-------
T ss_pred             ccccCCEEEECCCCccccc
Confidence            776 5588874 4555544

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.97  E-value=5.7e-32  Score=225.42  Aligned_cols=206  Identities=20%  Similarity=0.114  Sum_probs=159.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGC   78 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (338)
                      |+.++|+|+||||+|+||++++++|+++|+  +|++++|++...            .++++++.+|++|++++.+++  +
T Consensus         1 M~~~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~------------~~~~~~~~~D~~~~~~~~~~~--~   66 (215)
T 2a35_A            1 MHSTPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------------HPRLDNPVGPLAELLPQLDGS--I   66 (215)
T ss_dssp             ---CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------------CTTEECCBSCHHHHGGGCCSC--C
T ss_pred             CCCCCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCccc------------CCCceEEeccccCHHHHHHhh--h
Confidence            666678999999999999999999999998  999999987641            157899999999999888888  9


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      |+|||+|+..... ....+.+++.|+.++.++++++++.+ +++||++||.++|+                        .
T Consensus        67 d~vi~~a~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~v~~Ss~~~~~------------------------~  120 (215)
T 2a35_A           67 DTAFCCLGTTIKE-AGSEEAFRAVDFDLPLAVGKRALEMG-ARHYLVVSALGADA------------------------K  120 (215)
T ss_dssp             SEEEECCCCCHHH-HSSHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT------------------------T
T ss_pred             cEEEECeeecccc-CCCHHHHHHhhHHHHHHHHHHHHHcC-CCEEEEECCcccCC------------------------C
Confidence            9999999864321 13345788999999999999999988 88999999998884                        1


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHcCcc-EEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHH
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEENNID-FISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSA  237 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~~~~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~  237 (338)
                      |.+.|+.+|..+|.+++.    .+++ ++++||+.+||+.....+   ... ..   +....+.. +.++++|++|+|++
T Consensus       121 ~~~~y~~sK~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~~---~~~-~~---~~~~~~~~-~~~~~i~~~Dva~~  188 (215)
T 2a35_A          121 SSIFYNRVKGELEQALQE----QGWPQLTIARPSLLFGPREEFRL---AEI-LA---APIARILP-GKYHGIEACDLARA  188 (215)
T ss_dssp             CSSHHHHHHHHHHHHHTT----SCCSEEEEEECCSEESTTSCEEG---GGG-TT---CCCC-----CHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHH----cCCCeEEEEeCceeeCCCCcchH---HHH-HH---HhhhhccC-CCcCcEeHHHHHHH
Confidence            345899999999998864    5899 999999999999754211   111 11   11111221 23679999999999


Q ss_pred             HHHhhcCCCCCCceEEec-CCCC
Q 040253          238 HIFLFEHPNAKGRYICSS-HPAT  259 (338)
Q Consensus       238 ~~~~l~~~~~~~~~~~~~-~~~t  259 (338)
                      ++.+++++. +++||+++ +.++
T Consensus       189 ~~~~~~~~~-~~~~~i~~~~~~~  210 (215)
T 2a35_A          189 LWRLALEEG-KGVRFVESDELRK  210 (215)
T ss_dssp             HHHHHTCCC-SEEEEEEHHHHHH
T ss_pred             HHHHHhcCC-CCceEEcHHHHHH
Confidence            999999875 77898854 4433

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.97  E-value=6.4e-31  Score=224.44  Aligned_cols=230  Identities=18%  Similarity=0.174  Sum_probs=171.1

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      +++|+||||||+|+||++++++|+++  |++|++++|++.....   +      ..+++++.+|++|.+++.++++++|+
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~---~------~~~~~~~~~D~~d~~~~~~~~~~~d~   72 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK---I------GGEADVFIGDITDADSINPAFQGIDA   72 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH---T------TCCTTEEECCTTSHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh---c------CCCeeEEEecCCCHHHHHHHHcCCCE
Confidence            45789999999999999999999999  8999999997543322   1      14678899999999999999999999


Q ss_pred             EEEecccCCCCC--------CCcc------chhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           81 VFHLATPMDFES--------KDPE------NEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        81 vi~~a~~~~~~~--------~~~~------~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      |||+|+......        ..+.      ...++.|+.++.++++++++.+ +++||++||.+++.          +..
T Consensus        73 vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~SS~~~~~----------~~~  141 (253)
T 1xq6_A           73 LVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VKHIVVVGSMGGTN----------PDH  141 (253)
T ss_dssp             EEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CSEEEEEEETTTTC----------TTC
T ss_pred             EEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC-CCEEEEEcCccCCC----------CCC
Confidence            999998643110        0111      1357899999999999999888 88999999987652          111


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                      +.       .....+.|+.+|..+|.+++    +.|++++++||+.+||+.....  ..+       .+....+. ....
T Consensus       142 ~~-------~~~~~~~y~~sK~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~--~~~-------~~~~~~~~-~~~~  200 (253)
T 1xq6_A          142 PL-------NKLGNGNILVWKRKAEQYLA----DSGTPYTIIRAGGLLDKEGGVR--ELL-------VGKDDELL-QTDT  200 (253)
T ss_dssp             GG-------GGGGGCCHHHHHHHHHHHHH----TSSSCEEEEEECEEECSCSSSS--CEE-------EESTTGGG-GSSC
T ss_pred             cc-------ccccchhHHHHHHHHHHHHH----hCCCceEEEecceeecCCcchh--hhh-------ccCCcCCc-CCCC
Confidence            00       00112358889999999875    3799999999999999874321  000       01111111 1235


Q ss_pred             ccccHHHHHHHHHHhhcCCCC-CCceEEec----CCCCHHHHHHHHHHhCCC
Q 040253          227 QFVHLDDLCSAHIFLFEHPNA-KGRYICSS----HPATILELAKFLREKYPE  273 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~~-~~~~~~~~----~~~t~~e~~~~i~~~~~~  273 (338)
                      ++++++|+|++++.+++++.. +++||+++    .++|+.|+++.+.+.+|+
T Consensus       201 ~~~~~~Dva~~~~~~~~~~~~~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~  252 (253)
T 1xq6_A          201 KTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSR  252 (253)
T ss_dssp             CEEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred             cEEcHHHHHHHHHHHHcCccccCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence            799999999999999988654 45788854    359999999999998774

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.97  E-value=7.7e-31  Score=228.58  Aligned_cols=214  Identities=16%  Similarity=0.241  Sum_probs=160.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      |+|||||||||||++++++|++. |++|++++|+++....+.        ..+++++.+|++|++++.++++++|+|||+
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~--------~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW--------RGKVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG--------BTTBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh--------hCCCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            57999999999999999999998 899999999876533221        157899999999999999999999999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHH
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF  164 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~  164 (338)
                      |+...         ....|+.++.++++++++.+ +++|||+||.+..           +..            |. .+.
T Consensus        73 a~~~~---------~~~~~~~~~~~l~~aa~~~g-v~~iv~~Ss~~~~-----------~~~------------~~-~~~  118 (289)
T 3e48_A           73 PSIIH---------PSFKRIPEVENLVYAAKQSG-VAHIIFIGYYADQ-----------HNN------------PF-HMS  118 (289)
T ss_dssp             CCCCC---------SHHHHHHHHHHHHHHHHHTT-CCEEEEEEESCCS-----------TTC------------CS-TTH
T ss_pred             CCCCc---------cchhhHHHHHHHHHHHHHcC-CCEEEEEcccCCC-----------CCC------------CC-ccc
Confidence            98532         12458899999999999999 8999999984311           011            10 111


Q ss_pred             HHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC-CCccccHHHHHHHHHHhhc
Q 040253          165 VSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK-QGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       165 ~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~D~a~~~~~~l~  243 (338)
                      ..+..+|..+    ++.|++++++||+.++|+..     ..+....   .+....++.+. .+++++++|+|++++.++.
T Consensus       119 ~~~~~~e~~~----~~~g~~~~ilrp~~~~~~~~-----~~~~~~~---~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~  186 (289)
T 3e48_A          119 PYFGYASRLL----STSGIDYTYVRMAMYMDPLK-----PYLPELM---NMHKLIYPAGDGRINYITRNDIARGVIAIIK  186 (289)
T ss_dssp             HHHHHHHHHH----HHHCCEEEEEEECEESTTHH-----HHHHHHH---HHTEECCCCTTCEEEEECHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHH----HHcCCCEEEEeccccccccH-----HHHHHHH---HCCCEecCCCCceeeeEEHHHHHHHHHHHHc
Confidence            2222344443    45699999999999999742     1111111   12222233333 2679999999999999999


Q ss_pred             CCCC-CCceEEecCCCCHHHHHHHHHHhCCC
Q 040253          244 HPNA-KGRYICSSHPATILELAKFLREKYPE  273 (338)
Q Consensus       244 ~~~~-~~~~~~~~~~~t~~e~~~~i~~~~~~  273 (338)
                      .+.. +++|+++++.+|+.|+++.+.+.+|.
T Consensus       187 ~~~~~g~~~~~~~~~~s~~e~~~~~~~~~g~  217 (289)
T 3e48_A          187 NPDTWGKRYLLSGYSYDMKELAAILSEASGT  217 (289)
T ss_dssp             CGGGTTCEEEECCEEEEHHHHHHHHHHHHTS
T ss_pred             CCCcCCceEEeCCCcCCHHHHHHHHHHHHCC
Confidence            8765 56898888889999999999999875

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.97  E-value=7.6e-30  Score=223.39  Aligned_cols=225  Identities=16%  Similarity=0.159  Sum_probs=171.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +|+|+||||||+||++++++|+++| ++|++++|++..... ..+..     .+++++.+|++|++++.++++++|+|||
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~-~~l~~-----~~~~~~~~D~~d~~~l~~~~~~~d~vi~   78 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA-KELRL-----QGAEVVQGDQDDQVIMELALNGAYATFI   78 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH-HHHHH-----TTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH-HHHHH-----CCCEEEEecCCCHHHHHHHHhcCCEEEE
Confidence            5899999999999999999999998 999999998765421 11111     4789999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      +++....       .....|+.++.++++++++.+ +++||++|+..+++..        +.            .+...|
T Consensus        79 ~a~~~~~-------~~~~~~~~~~~~~~~aa~~~g-v~~iv~~S~~~~~~~~--------~~------------~~~~~y  130 (299)
T 2wm3_A           79 VTNYWES-------CSQEQEVKQGKLLADLARRLG-LHYVVYSGLENIKKLT--------AG------------RLAAAH  130 (299)
T ss_dssp             CCCHHHH-------TCHHHHHHHHHHHHHHHHHHT-CSEEEECCCCCHHHHT--------TT------------SCCCHH
T ss_pred             eCCCCcc-------ccchHHHHHHHHHHHHHHHcC-CCEEEEEcCccccccC--------CC------------cccCch
Confidence            9974221       124567889999999999988 8999998887777411        11            134589


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC--CCCCCC-CCCccccHHHHHHHHHH
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE--AHYPII-KQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~i~v~D~a~~~~~  240 (338)
                      +.+|..+|.+++.    .|++++++||+.+||+........      ....+..  ..++.+ ..+++++++|+|+++..
T Consensus       131 ~~sK~~~e~~~~~----~gi~~~ilrp~~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~  200 (299)
T 2wm3_A          131 FDGKGEVEEYFRD----IGVPMTSVRLPCYFENLLSHFLPQ------KAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLS  200 (299)
T ss_dssp             HHHHHHHHHHHHH----HTCCEEEEECCEEGGGGGTTTCCE------ECTTSSSEEECCCCTTSCEEEECGGGHHHHHHH
T ss_pred             hhHHHHHHHHHHH----CCCCEEEEeecHHhhhchhhcCCc------ccCCCCEEEEEecCCCCccceecHHHHHHHHHH
Confidence            9999999998864    599999999999999753211110      0011211  112222 23679999999999999


Q ss_pred             hhcCCC--CCCceEEecCCCCHHHHHHHHHHhCCC
Q 040253          241 LFEHPN--AKGRYICSSHPATILELAKFLREKYPE  273 (338)
Q Consensus       241 ~l~~~~--~~~~~~~~~~~~t~~e~~~~i~~~~~~  273 (338)
                      ++..+.  .++.|+++++.+|+.|+++.+.+.+|.
T Consensus       201 ~l~~~~~~~g~~~~~~g~~~s~~e~~~~~~~~~g~  235 (299)
T 2wm3_A          201 LLKMPEKYVGQNIGLSTCRHTAEEYAALLTKHTRK  235 (299)
T ss_dssp             HHHSHHHHTTCEEECCSEEECHHHHHHHHHHHHSS
T ss_pred             HHcChhhhCCeEEEeeeccCCHHHHHHHHHHHHCC
Confidence            998742  356888877789999999999998874

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.96  E-value=1.7e-29  Score=225.73  Aligned_cols=228  Identities=16%  Similarity=0.118  Sum_probs=167.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecc-cCCCCCchhhhCCcc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKAD-LAEEGNFDEPIRGCT   79 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D-l~d~~~~~~~~~~~d   79 (338)
                      |++.+|+|+|||||||||++++++|+++|++|++++|+++.... +.+...    ++++++.+| ++|++++.++++++|
T Consensus         1 M~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-~~l~~~----~~v~~v~~D~l~d~~~l~~~~~~~d   75 (352)
T 1xgk_A            1 MAQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQAI----PNVTLFQGPLLNNVPLMDTLFEGAH   75 (352)
T ss_dssp             --CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH-HHHHTS----TTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH-HHHhhc----CCcEEEECCccCCHHHHHHHHhcCC
Confidence            65546899999999999999999999999999999998776421 122111    478999999 999999999999999


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce--eeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG--TLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~--v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      +|||+++...          ...|..+ .++++++++.+++++|||+||.+  .|+  .                     
T Consensus        76 ~Vi~~a~~~~----------~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~--~---------------------  121 (352)
T 1xgk_A           76 LAFINTTSQA----------GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYG--P---------------------  121 (352)
T ss_dssp             EEEECCCSTT----------SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTS--S---------------------
T ss_pred             EEEEcCCCCC----------cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccC--C---------------------
Confidence            9999987421          1346666 99999998875468999999975  221  0                     


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC--CCC-CCCCCccccH-HH
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA--HYP-IIKQGQFVHL-DD  233 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~i~v-~D  233 (338)
                      .+.+.|+.+|..+|.+++.    .+++++++||+ +||++........+.. .....+...  .+. ....++++|+ +|
T Consensus       122 ~~~~~y~~sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~i~v~~D  195 (352)
T 1xgk_A          122 WPAVPMWAPKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLPYPLFQM-ELMPDGTFEWHAPFDPDIPLPWLDAEHD  195 (352)
T ss_dssp             CCCCTTTHHHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSSCSSCBE-EECTTSCEEEEESSCTTSCEEEECHHHH
T ss_pred             CCCccHHHHHHHHHHHHHH----cCCCEEEEecc-eecCCchhcccccccc-cccCCCceEEeeccCCCCceeeEecHHH
Confidence            1335799999999999864    59999999986 6888654322111110 000112211  122 2233689999 99


Q ss_pred             HHHHHHHhhcCCC---CCCceEEecCCCCHHHHHHHHHHhCCC
Q 040253          234 LCSAHIFLFEHPN---AKGRYICSSHPATILELAKFLREKYPE  273 (338)
Q Consensus       234 ~a~~~~~~l~~~~---~~~~~~~~~~~~t~~e~~~~i~~~~~~  273 (338)
                      +|++++.+++++.   .+++|+++++.+|+.|+++.+.+.+|.
T Consensus       196 va~ai~~~l~~~~~~~~g~~~~l~~~~~s~~e~~~~i~~~~G~  238 (352)
T 1xgk_A          196 VGPALLQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR  238 (352)
T ss_dssp             HHHHHHHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCCchhhCCeEEEEecCCCCHHHHHHHHHHHHCC
Confidence            9999999998752   467899988889999999999998874

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.96  E-value=2.5e-29  Score=213.34  Aligned_cols=207  Identities=14%  Similarity=0.125  Sum_probs=158.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      +|+|+||||+|+||++++++|+++|+  +|++++|+++......        .+++.++.+|++|++++.++++++|+||
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~d~vi   89 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQGHDVGF   89 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGSSCSEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc--------cCCceEEecCcCCHHHHHHHhcCCCEEE
Confidence            57999999999999999999999999  9999999876432211        1467899999999999999999999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      |+|+.....  ...+..+++|+.++.++++++++.+ .++||++||.++|+  .                      +.+.
T Consensus        90 ~~ag~~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~-~~~iv~~SS~~~~~--~----------------------~~~~  142 (242)
T 2bka_A           90 CCLGTTRGK--AGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSSKGADK--S----------------------SNFL  142 (242)
T ss_dssp             ECCCCCHHH--HHHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT--T----------------------CSSH
T ss_pred             ECCCccccc--CCcccceeeeHHHHHHHHHHHHHCC-CCEEEEEccCcCCC--C----------------------Ccch
Confidence            999864311  1234678999999999999999888 88999999998874  1                      2348


Q ss_pred             HHHHHHHHHHHHHHHHHHcCc-cEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHh
Q 040253          163 YFVSKTLAEQAAWKFAEENNI-DFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFL  241 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  241 (338)
                      |+.+|..+|.+++.    .++ +++++||+.++|+......   .........+....  .....++++++|+|++++.+
T Consensus       143 Y~~sK~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~dva~~~~~~  213 (242)
T 2bka_A          143 YLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESRP---GEWLVRKFFGSLPD--SWASGHSVPVVTVVRAMLNN  213 (242)
T ss_dssp             HHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGSH---HHHHHHHHHCSCCT--TGGGGTEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----cCCCCeEEEcCceecCCCCCCcH---HHHHHHHhhcccCc--cccCCcccCHHHHHHHHHHH
Confidence            99999999998854    578 5999999999999743211   11111111111111  11124699999999999999


Q ss_pred             hcCCCCCCceEEec
Q 040253          242 FEHPNAKGRYICSS  255 (338)
Q Consensus       242 l~~~~~~~~~~~~~  255 (338)
                      +.++...+.+++++
T Consensus       214 ~~~~~~~~~~~~~~  227 (242)
T 2bka_A          214 VVRPRDKQMELLEN  227 (242)
T ss_dssp             HTSCCCSSEEEEEH
T ss_pred             HhCccccCeeEeeH
Confidence            99887777777643

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.96  E-value=1.5e-28  Score=203.19  Aligned_cols=200  Identities=15%  Similarity=0.124  Sum_probs=152.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|+||||+|+||++++++|+++|++|++++|+++.....        ...+++++.+|++|++++.++++++|+|||+|
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc--------cCCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            7999999999999999999999999999999986542210        02578999999999999999999999999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +....  .    ...+.|+.++.++++++++.+ +++||++||.++|+..  ...               + .+...|+.
T Consensus        76 ~~~~~--~----~~~~~n~~~~~~~~~~~~~~~-~~~~v~~Ss~~~~~~~--~~~---------------~-~~~~~y~~  130 (206)
T 1hdo_A           76 GTRND--L----SPTTVMSEGARNIVAAMKAHG-VDKVVACTSAFLLWDP--TKV---------------P-PRLQAVTD  130 (206)
T ss_dssp             CCTTC--C----SCCCHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSCT--TCS---------------C-GGGHHHHH
T ss_pred             cCCCC--C----CccchHHHHHHHHHHHHHHhC-CCeEEEEeeeeeccCc--ccc---------------c-ccchhHHH
Confidence            86543  1    123589999999999999888 8899999999888621  110               0 14568999


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      +|..+|.+++    +.+++++++||+.++ ++......   .   ... ..   .+  . .++++++|+|++++.+++++
T Consensus       131 ~K~~~e~~~~----~~~i~~~~lrp~~~~-~~~~~~~~---~---~~~-~~---~~--~-~~~i~~~Dva~~~~~~~~~~  192 (206)
T 1hdo_A          131 DHIRMHKVLR----ESGLKYVAVMPPHIG-DQPLTGAY---T---VTL-DG---RG--P-SRVISKHDLGHFMLRCLTTD  192 (206)
T ss_dssp             HHHHHHHHHH----HTCSEEEEECCSEEE-CCCCCSCC---E---EES-SS---CS--S-CSEEEHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHH----hCCCCEEEEeCCccc-CCCCCcce---E---ecc-cC---CC--C-CCccCHHHHHHHHHHHhcCc
Confidence            9999999884    469999999999983 33211100   0   000 10   00  0 48999999999999999986


Q ss_pred             CC-CCceEEecC
Q 040253          246 NA-KGRYICSSH  256 (338)
Q Consensus       246 ~~-~~~~~~~~~  256 (338)
                      .. ++.|+++++
T Consensus       193 ~~~g~~~~i~~g  204 (206)
T 1hdo_A          193 EYDGHSTYPSHQ  204 (206)
T ss_dssp             TTTTCEEEEECC
T ss_pred             cccccceeeecc
Confidence            54 457887653

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.96  E-value=6.9e-29  Score=215.33  Aligned_cols=239  Identities=14%  Similarity=0.062  Sum_probs=170.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |+.++|+||||||+|+||++++++|+++|++|++++|+.+.........     ..+++++.+|++|.+++.++++    
T Consensus         1 M~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~   75 (281)
T 3m1a_A            1 MSESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLA   75 (281)
T ss_dssp             ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            7777899999999999999999999999999999999877655543322     1478999999999998887765    


Q ss_pred             ---CccEEEEecccCCC-----CCCCccchhhhhhhHH----HHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDF-----ESKDPENEVIRPTING----MVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~----~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|+|||+||....     ...+..+..+++|+.+    +..++..+++.+ ..++|++||...+.           
T Consensus        76 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~-----------  143 (281)
T 3m1a_A           76 RYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSFGGQL-----------  143 (281)
T ss_dssp             HHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC-----------
T ss_pred             hCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCccccC-----------
Confidence               78999999986431     1122334678999999    455555556666 68999999987653           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCC-------CChhHHHhhhhcc
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSS-------MPPSLITALSPIT  214 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~  214 (338)
                                 +..+.+.|+.+|.+.|.+++.++.+   +|+++++++||.+.++.....       ..........   
T Consensus       144 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~---  209 (281)
T 3m1a_A          144 -----------SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGP---  209 (281)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHH---
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHH---
Confidence                       1235669999999999999999988   699999999999988754321       1111111000   


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCceEEec-CCCCHHHHHHHHHHhC
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSS-HPATILELAKFLREKY  271 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~-~~~t~~e~~~~i~~~~  271 (338)
                      ... ........++.+++|+|++++.+++.+..++.|++++ ....+.+....+.+.+
T Consensus       210 ~~~-~~~~~~~~~~~~~~dva~a~~~~~~~~~~~~~~~l~s~~~~~i~g~~~~i~~~~  266 (281)
T 3m1a_A          210 TRQ-LVQGSDGSQPGDPAKAAAAIRLALDTEKTPLRLALGGDAVDFLTGHLDSVRAEL  266 (281)
T ss_dssp             HHH-HHHC-----CBCHHHHHHHHHHHHHSSSCCSEEEESHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHhhccCCCCCCHHHHHHHHHHHHhCCCCCeEEecCchHHHHHHHHHHHHHHHH
Confidence            000 0001112568899999999999999988788888754 4456666666665543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.95  E-value=2.4e-27  Score=205.34  Aligned_cols=235  Identities=16%  Similarity=0.208  Sum_probs=171.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.............   ..++.++.+|++|.+++.++++       
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC---CCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            458999999999999999999999999999999976544333222211   1378999999999998888775       


Q ss_pred             CccEEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|+|||+||.....       ..+..+..+++|+.++.++++++...    + .+++|++||..++....         
T Consensus        92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~~~---------  161 (278)
T 2bgk_A           92 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFTAGE---------  161 (278)
T ss_dssp             CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTCCCT---------
T ss_pred             CCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC-CCeEEEEeeccccCCCC---------
Confidence            799999999864311       11233467899999999999887653    4 57999999988774110         


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCC--hhHHHhhhhcccCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMP--PSLITALSPITRNEAHY  220 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~  220 (338)
                                  .+...|+.+|.+.|.+++.++.+   +|++++++|||.++++.......  ........  ...+.. 
T Consensus       162 ------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~--~~~~~~-  226 (278)
T 2bgk_A          162 ------------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELA--HQAANL-  226 (278)
T ss_dssp             ------------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHH--HHTCSS-
T ss_pred             ------------CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhh--hccccc-
Confidence                        13458999999999999999876   48999999999999986543221  11111111  111111 


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC---CCCceEE-ecCCCCHHHHHHHHHHh
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYIC-SSHPATILELAKFLREK  270 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~-~~~~~t~~e~~~~i~~~  270 (338)
                          ..++++++|+|++++.++....   .+..|++ ++..+++.|+++.+.+.
T Consensus       227 ----~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~e~~~~i~~~  276 (278)
T 2bgk_A          227 ----KGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYTRTNPAFPTALKHG  276 (278)
T ss_dssp             ----CSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred             ----ccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcccccCCccchhhhhh
Confidence                1468999999999999996532   2446777 45679999999887654

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.95  E-value=9.8e-28  Score=211.27  Aligned_cols=235  Identities=16%  Similarity=0.184  Sum_probs=163.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGC   78 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (338)
                      |+. +|+|+|||||||||++++++|+++|++|++++|+...  ..+.+.+..+.  ..+++++.+|++|++++.++++++
T Consensus         1 M~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~l~~~~~~~   77 (313)
T 1qyd_A            1 MDK-KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALKQV   77 (313)
T ss_dssp             -CC-CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHTTC
T ss_pred             CCC-CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHH--hCCeEEEeCCCCCHHHHHHHHhCC
Confidence            543 6789999999999999999999999999999998643  12221111100  157899999999999999999999


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      |+|||+++....          ..|+.++.+++++|++.+++++||+ |   +|+...  ...   ..         +..
T Consensus        78 d~vi~~a~~~~~----------~~~~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~--~~~---~~---------~~~  129 (313)
T 1qyd_A           78 DVVISALAGGVL----------SHHILEQLKLVEAIKEAGNIKRFLP-S---EFGMDP--DIM---EH---------ALQ  129 (313)
T ss_dssp             SEEEECCCCSSS----------STTTTTHHHHHHHHHHSCCCSEEEC-S---CCSSCT--TSC---CC---------CCS
T ss_pred             CEEEECCccccc----------hhhHHHHHHHHHHHHhcCCCceEEe-c---CCcCCc--ccc---cc---------CCC
Confidence            999999986432          1256778999999998865789985 3   454211  111   11         112


Q ss_pred             C-CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC-CccccHHHHHH
Q 040253          159 T-GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ-GQFVHLDDLCS  236 (338)
Q Consensus       159 p-~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~  236 (338)
                      | ...| .+|..+|++++    +.|++++++||+.++|+..... ..... ......+....++.+.. +++++++|+|+
T Consensus       130 p~~~~y-~sK~~~e~~~~----~~g~~~~ilrp~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~i~~~Dva~  202 (313)
T 1qyd_A          130 PGSITF-IDKRKVRRAIE----AASIPYTYVSSNMFAGYFAGSL-AQLDG-HMMPPRDKVLIYGDGNVKGIWVDEDDVGT  202 (313)
T ss_dssp             STTHHH-HHHHHHHHHHH----HTTCCBCEEECCEEHHHHTTTS-SCTTC-CSSCCSSEECCBTTSCSEEEEECHHHHHH
T ss_pred             CCcchH-HHHHHHHHHHH----hcCCCeEEEEeceecccccccc-ccccc-cccCCCCeEEEeCCCCceEEEEEHHHHHH
Confidence            3 4578 99999999885    4699999999999988542211 10000 00000111122333322 68999999999


Q ss_pred             HHHHhhcCCCC-CCceEE-ec-CCCCHHHHHHHHHHhCCC
Q 040253          237 AHIFLFEHPNA-KGRYIC-SS-HPATILELAKFLREKYPE  273 (338)
Q Consensus       237 ~~~~~l~~~~~-~~~~~~-~~-~~~t~~e~~~~i~~~~~~  273 (338)
                      +++.+++++.. ++.|++ ++ +.+|+.|+++.+.+.+|.
T Consensus       203 ~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~  242 (313)
T 1qyd_A          203 YTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ  242 (313)
T ss_dssp             HHHHHTTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCcccCCceEEEeCCCCccCHHHHHHHHHHhcCC
Confidence            99999987654 455655 44 689999999999999874

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.94  E-value=1.8e-26  Score=194.89  Aligned_cols=200  Identities=17%  Similarity=0.210  Sum_probs=137.6

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ++||+||||||+|+||++++++|+++| ++|++++|+++....+        ...+++++.+|++|++++.++++++|+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~--------~~~~~~~~~~Dl~d~~~~~~~~~~~D~v   92 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP--------YPTNSQIIMGDVLNHAALKQAMQGQDIV   92 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS--------CCTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc--------ccCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence            357899999999999999999999999 8999999986543211        1157899999999999999999999999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      ||+++...      .       ...+.++++++++.+ +++||++||..+|+..........+..         ...+..
T Consensus        93 v~~a~~~~------~-------~~~~~~~~~~~~~~~-~~~iV~iSS~~~~~~~~~~~~~~~~~~---------~~~~~~  149 (236)
T 3qvo_A           93 YANLTGED------L-------DIQANSVIAAMKACD-VKRLIFVLSLGIYDEVPGKFVEWNNAV---------IGEPLK  149 (236)
T ss_dssp             EEECCSTT------H-------HHHHHHHHHHHHHTT-CCEEEEECCCCC-------------------------CGGGH
T ss_pred             EEcCCCCc------h-------hHHHHHHHHHHHHcC-CCEEEEEecceecCCCCcccccchhhc---------ccchHH
Confidence            99998411      1       123678999999988 899999999999973222111222222         112223


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHh
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFL  241 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~  241 (338)
                      .|    ..+|+.+    ++.|+++++|||+.++++.....         ... .....+    ..++++.+|+|++++.+
T Consensus       150 ~~----~~~~~~l----~~~gi~~~~vrPg~i~~~~~~~~---------~~~-~~~~~~----~~~~i~~~DvA~~i~~l  207 (236)
T 3qvo_A          150 PF----RRAADAI----EASGLEYTILRPAWLTDEDIIDY---------ELT-SRNEPF----KGTIVSRKSVAALITDI  207 (236)
T ss_dssp             HH----HHHHHHH----HTSCSEEEEEEECEEECCSCCCC---------EEE-CTTSCC----SCSEEEHHHHHHHHHHH
T ss_pred             HH----HHHHHHH----HHCCCCEEEEeCCcccCCCCcce---------EEe-ccCCCC----CCcEECHHHHHHHHHHH
Confidence            34    4445544    35799999999999998753210         000 111111    13589999999999999


Q ss_pred             hcCCC--CCCceEEec
Q 040253          242 FEHPN--AKGRYICSS  255 (338)
Q Consensus       242 l~~~~--~~~~~~~~~  255 (338)
                      +..+.  .++.|++++
T Consensus       208 l~~~~~~~g~~~~i~~  223 (236)
T 3qvo_A          208 IDKPEKHIGENIGINQ  223 (236)
T ss_dssp             HHSTTTTTTEEEEEEC
T ss_pred             HcCcccccCeeEEecC
Confidence            98876  355777754

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.94  E-value=1.3e-26  Score=198.17  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=161.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|++++.++++       
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   87 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ--LGGQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHH--hCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            458999999999999999999999999999999986554433221111  12478899999999998888775       


Q ss_pred             CccEEEEecccCCCC----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 GCTGVFHLATPMDFE----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      ++|+|||+||.....    ..+..+..+++|+.++.++++++.    +.+ .++||++||...+.               
T Consensus        88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~---------------  151 (255)
T 1fmc_A           88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN---------------  151 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC---------------
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcC---------------
Confidence            899999999865421    112234678899999999888774    344 67999999987764               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +..+...|+.+|.+.|.+++.+++++   +++++++|||.++++..............  ..+.  ..     
T Consensus       152 -------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~--~~~~--~~-----  215 (255)
T 1fmc_A          152 -------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKM--LQHT--PI-----  215 (255)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHH--HHTC--SS-----
T ss_pred             -------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhccChHHHHHH--HhcC--Cc-----
Confidence                   11245689999999999999988775   89999999999998753322222111111  1111  11     


Q ss_pred             CccccHHHHHHHHHHhhcCCC---CCCceEEe-cCCCCH
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN---AKGRYICS-SHPATI  260 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~-~~~~t~  260 (338)
                      .++++++|+|+++..++....   .+..|+++ +...|+
T Consensus       216 ~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~s~  254 (255)
T 1fmc_A          216 RRLGQPQDIANAALFLCSPAASWVSGQILTVSGGGVQEL  254 (255)
T ss_dssp             CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTSCCCC
T ss_pred             ccCCCHHHHHHHHHHHhCCccccCCCcEEEECCceeccC
Confidence            458899999999999997543   24478885 455553

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.94  E-value=7.6e-28  Score=205.68  Aligned_cols=229  Identities=15%  Similarity=0.113  Sum_probs=157.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----CccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----GCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~   80 (338)
                      ||+||||||+|+||++++++|+++|++|++++|+++...            .   .+.+|++|.+++.++++    ++|+
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~---~~~~D~~~~~~~~~~~~~~~~~~d~   65 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIE------------A---DLSTPGGRETAVAAVLDRCGGVLDG   65 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE------------C---CTTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHcc------------c---cccCCcccHHHHHHHHHHcCCCccE
Confidence            478999999999999999999999999999999865421            0   26789999888888775    8999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCC----CCCc-hh
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDET----SWSD-LD  151 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~----~~~~-~~  151 (338)
                      |||+||....  ..+.+..+++|+.++.++++++...    + .+++|++||..+|+.... ..+..|.    ++.. ..
T Consensus        66 vi~~Ag~~~~--~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~-~~~~~~~~~~~~~~~~~~  141 (255)
T 2dkn_A           66 LVCCAGVGVT--AANSGLVVAVNYFGVSALLDGLAEALSRGQ-QPAAVIVGSIAATQPGAA-ELPMVEAMLAGDEARAIE  141 (255)
T ss_dssp             EEECCCCCTT--SSCHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSTTGG-GCHHHHHHHHTCHHHHHH
T ss_pred             EEECCCCCCc--chhHHHHHHHHhHHHHHHHHHHHHHhhhcC-CceEEEEecccccccccc-ccchhhhhcccchhhhhh
Confidence            9999996542  2345688999999999999977653    4 589999999998862211 1111110    0000 00


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCCCCCCCCCCc
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  227 (338)
                      ..+....+.+.|+.+|.++|.+++.++++   +|++++++||+.++|+....    .+.... .....   .+.. ...+
T Consensus       142 ~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~~----~~~~~~~~~~~~---~~~~-~~~~  213 (255)
T 2dkn_A          142 LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQA----SKADPRYGESTR---RFVA-PLGR  213 (255)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHHH----HHHCTTTHHHHH---SCCC-TTSS
T ss_pred             hccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhhh----cccchhhHHHHH---HHHH-HhcC
Confidence            00011235678999999999999998877   59999999999999875211    000000 00000   0101 2257


Q ss_pred             cccHHHHHHHHHHhhcCCC---CCCceEEec-CCCCH
Q 040253          228 FVHLDDLCSAHIFLFEHPN---AKGRYICSS-HPATI  260 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~---~~~~~~~~~-~~~t~  260 (338)
                      +++++|+|++++.++..+.   .+..|++++ ..+++
T Consensus       214 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~  250 (255)
T 2dkn_A          214 GSEPREVAEAIAFLLGPQASFIHGSVLFVDGGMDALM  250 (255)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCcccceeeEEEecCCeEeee
Confidence            9999999999999998652   244678754 34443

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.94  E-value=1.4e-26  Score=203.25  Aligned_cols=222  Identities=16%  Similarity=0.202  Sum_probs=157.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-------CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-------DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      ||+|+||||||+||++++++|+++|++|++++|++       ++...+..+..     .+++++.+|++|++++.+++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~-----~~v~~v~~D~~d~~~l~~~~~~   76 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQS-----LGVILLEGDINDHETLVKAIKQ   76 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHH-----TTCEEEECCTTCHHHHHHHHTT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHh-----CCCEEEEeCCCCHHHHHHHHhC
Confidence            67899999999999999999999999999999986       22222222211     4789999999999999999999


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      +|+|||+++...              +.++.++++++++.+.+++||+ |   +||...      +|..         +.
T Consensus        77 ~d~vi~~a~~~~--------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~~------~~~~---------~~  123 (307)
T 2gas_A           77 VDIVICAAGRLL--------------IEDQVKIIKAIKEAGNVKKFFP-S---EFGLDV------DRHD---------AV  123 (307)
T ss_dssp             CSEEEECSSSSC--------------GGGHHHHHHHHHHHCCCSEEEC-S---CCSSCT------TSCC---------CC
T ss_pred             CCEEEECCcccc--------------cccHHHHHHHHHhcCCceEEee-c---ccccCc------cccc---------CC
Confidence            999999998532              3456789999988764788883 3   354111      1221         11


Q ss_pred             CC-CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-CCCCCCCC-CccccHHHH
Q 040253          158 MT-GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-AHYPIIKQ-GQFVHLDDL  234 (338)
Q Consensus       158 ~p-~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~i~v~D~  234 (338)
                      .| .+.| .+|..+|.+++    +.+++++++||+.++|+........    ......+.. ..++.+.. +++++++|+
T Consensus       124 ~p~~~~y-~sK~~~e~~~~----~~~i~~~~lrp~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~Dv  194 (307)
T 2gas_A          124 EPVRQVF-EEKASIRRVIE----AEGVPYTYLCCHAFTGYFLRNLAQL----DATDPPRDKVVILGDGNVKGAYVTEADV  194 (307)
T ss_dssp             TTHHHHH-HHHHHHHHHHH----HHTCCBEEEECCEETTTTGGGTTCT----TCSSCCSSEEEEETTSCSEEEEECHHHH
T ss_pred             CcchhHH-HHHHHHHHHHH----HcCCCeEEEEcceeecccccccccc----ccccCCCCeEEEecCCCcceEEeeHHHH
Confidence            23 3578 99999998885    3589999999999988642211000    000001111 12222322 679999999


Q ss_pred             HHHHHHhhcCCCC-CCceEE-ec-CCCCHHHHHHHHHHhCCC
Q 040253          235 CSAHIFLFEHPNA-KGRYIC-SS-HPATILELAKFLREKYPE  273 (338)
Q Consensus       235 a~~~~~~l~~~~~-~~~~~~-~~-~~~t~~e~~~~i~~~~~~  273 (338)
                      |++++.++..+.. ++.|++ ++ +.+|+.|+++.+.+.+|.
T Consensus       195 a~~~~~~l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~  236 (307)
T 2gas_A          195 GTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIGK  236 (307)
T ss_dssp             HHHHHHHHTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHcCccccCceEEEeCCCCcCCHHHHHHHHHHHhCC
Confidence            9999999987654 345554 44 689999999999999874

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.94  E-value=5.3e-27  Score=206.10  Aligned_cols=228  Identities=19%  Similarity=0.269  Sum_probs=159.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH---HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK---KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      |+. ||+|+||||||+||++++++|++.|++|++++|+....   .+.+.+..+.  ..+++++.+|++|++++.+++++
T Consensus         1 M~~-~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d~~~l~~~~~~   77 (308)
T 1qyc_A            1 MGS-RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVKN   77 (308)
T ss_dssp             -CC-CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHHT
T ss_pred             CCC-CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHH--hCCCEEEEeccCCHHHHHHHHcC
Confidence            543 67899999999999999999999999999999976432   2221111110  15789999999999999999999


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      +|+|||+++...              +.++.+++++|++.+++++||+ |   +||..      .+|..         +.
T Consensus        78 ~d~vi~~a~~~~--------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~---------~~  124 (308)
T 1qyc_A           78 VDVVISTVGSLQ--------------IESQVNIIKAIKEVGTVKRFFP-S---EFGND------VDNVH---------AV  124 (308)
T ss_dssp             CSEEEECCCGGG--------------SGGGHHHHHHHHHHCCCSEEEC-S---CCSSC------TTSCC---------CC
T ss_pred             CCEEEECCcchh--------------hhhHHHHHHHHHhcCCCceEee-c---ccccC------ccccc---------cC
Confidence            999999998521              3346789999988765788984 4   35411      11222         11


Q ss_pred             CC-CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-CCCCCCC-CCccccHHHH
Q 040253          158 MT-GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-AHYPIIK-QGQFVHLDDL  234 (338)
Q Consensus       158 ~p-~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~i~v~D~  234 (338)
                      .| ...| .+|..+|.+++.    .+++++++||+.++|+.........    .....+.. ..++.+. .+++++++|+
T Consensus       125 ~p~~~~y-~sK~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~Dv  195 (308)
T 1qyc_A          125 EPAKSVF-EVKAKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQAG----LTAPPRDKVVILGDGNARVVFVKEEDI  195 (308)
T ss_dssp             TTHHHHH-HHHHHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTCTT----CSSCCSSEEEEETTSCCEEEEECHHHH
T ss_pred             CcchhHH-HHHHHHHHHHHh----cCCCeEEEEeceecccccccccccc----ccCCCCCceEEecCCCceEEEecHHHH
Confidence            23 3478 999999988853    5899999999999886432111100    00001111 1222222 2689999999


Q ss_pred             HHHHHHhhcCCCC-CCceEE-e-cCCCCHHHHHHHHHHhCCC
Q 040253          235 CSAHIFLFEHPNA-KGRYIC-S-SHPATILELAKFLREKYPE  273 (338)
Q Consensus       235 a~~~~~~l~~~~~-~~~~~~-~-~~~~t~~e~~~~i~~~~~~  273 (338)
                      |++++.+++++.. ++.|++ + ++.+|+.|+++.+.+.+|.
T Consensus       196 a~~~~~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~  237 (308)
T 1qyc_A          196 GTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK  237 (308)
T ss_dssp             HHHHHTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhCccccCeEEEEeCCCCccCHHHHHHHHHHHhCC
Confidence            9999999987654 445665 4 3689999999999999984

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.94  E-value=2.7e-26  Score=189.86  Aligned_cols=194  Identities=13%  Similarity=0.047  Sum_probs=151.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~vi   82 (338)
                      |+|+||||+|+||++++++|+++  +|++++|+++.........      .. +++.+|++|++++.++++   ++|+||
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~------~~-~~~~~D~~~~~~~~~~~~~~~~id~vi   71 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREV------GA-RALPADLADELEAKALLEEAGPLDLLV   71 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHH------TC-EECCCCTTSHHHHHHHHHHHCSEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhc------cC-cEEEeeCCCHHHHHHHHHhcCCCCEEE
Confidence            58999999999999999999988  9999999765544433221      12 888999999999998887   899999


Q ss_pred             EecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           83 HLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        83 ~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      |+||....     ...+..+..+++|+.++.++++++++.+ .++||++||..++.                      +.
T Consensus        72 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~iv~~sS~~~~~----------------------~~  128 (207)
T 2yut_A           72 HAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQK-GARAVFFGAYPRYV----------------------QV  128 (207)
T ss_dssp             ECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEE-EEEEEEECCCHHHH----------------------SS
T ss_pred             ECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcC-CcEEEEEcChhhcc----------------------CC
Confidence            99986532     1233445788999999999999996666 78999999988774                      11


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHH
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDL  234 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~  234 (338)
                      .+...|+.+|...|.+++.++.+   +|++++++||+.++++...               +....     ..++++++|+
T Consensus       129 ~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~---------------~~~~~-----~~~~~~~~dv  188 (207)
T 2yut_A          129 PGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA---------------PLGGP-----PKGALSPEEA  188 (207)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG---------------GGTSC-----CTTCBCHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc---------------ccCCC-----CCCCCCHHHH
Confidence            25568999999999999999887   5999999999999987511               11111     1579999999


Q ss_pred             HHHHHHhhcCCCCCCce
Q 040253          235 CSAHIFLFEHPNAKGRY  251 (338)
Q Consensus       235 a~~~~~~l~~~~~~~~~  251 (338)
                      |++++.+++++..+.++
T Consensus       189 a~~~~~~~~~~~~~~~~  205 (207)
T 2yut_A          189 ARKVLEGLFREPVPALL  205 (207)
T ss_dssp             HHHHHHHHC--CCCSCC
T ss_pred             HHHHHHHHhCCCCcccc
Confidence            99999999987655544

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.94  E-value=2.5e-26  Score=202.72  Aligned_cols=218  Identities=19%  Similarity=0.202  Sum_probs=157.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +++|+||||||+||++++++|++.|++|++++|+++ ....+..+..     .+++++.+|++|++++.++++++|+|||
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~-----~~v~~v~~Dl~d~~~l~~a~~~~d~vi~   85 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS-----LGAIIVKGELDEHEKLVELMKKVDVVIS   85 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH-----TTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc-----CCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            458999999999999999999999999999999875 3332222211     4789999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC-Cch
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT-GWM  162 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p-~~~  162 (338)
                      +++...              +.++.++++++++.+++++||+ |   +||..      .+|..         +..| ...
T Consensus        86 ~a~~~~--------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~---------~~~p~~~~  132 (318)
T 2r6j_A           86 ALAFPQ--------------ILDQFKILEAIKVAGNIKRFLP-S---DFGVE------EDRIN---------ALPPFEAL  132 (318)
T ss_dssp             CCCGGG--------------STTHHHHHHHHHHHCCCCEEEC-S---CCSSC------TTTCC---------CCHHHHHH
T ss_pred             CCchhh--------------hHHHHHHHHHHHhcCCCCEEEe-e---ccccC------ccccc---------CCCCcchh
Confidence            998521              3446889999988764788884 3   35411      12222         1112 346


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhh-cccCC-CCCCCCC-CCccccHHHHHHHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSP-ITRNE-AHYPIIK-QGQFVHLDDLCSAHI  239 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~-~~~~i~v~D~a~~~~  239 (338)
                      | .+|..+|.+++    +.+++++++||+.+++...        ...... ..+.. ..++.+. .+++++++|++++++
T Consensus       133 y-~sK~~~e~~~~----~~~~~~~~lr~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~  199 (318)
T 2r6j_A          133 I-ERKRMIRRAIE----EANIPYTYVSANCFASYFI--------NYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTI  199 (318)
T ss_dssp             H-HHHHHHHHHHH----HTTCCBEEEECCEEHHHHH--------HHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHH
T ss_pred             H-HHHHHHHHHHH----hcCCCeEEEEcceehhhhh--------hhhccccCCCCceEEecCCCceeeEeeHHHHHHHHH
Confidence            8 99999998885    4699999999998876421        111111 11111 1222232 267999999999999


Q ss_pred             HhhcCCCC-CCceEE-e-cCCCCHHHHHHHHHHhCCC
Q 040253          240 FLFEHPNA-KGRYIC-S-SHPATILELAKFLREKYPE  273 (338)
Q Consensus       240 ~~l~~~~~-~~~~~~-~-~~~~t~~e~~~~i~~~~~~  273 (338)
                      .++..+.. ++.|++ + ++.+|+.|+++.+.+.+|.
T Consensus       200 ~~l~~~~~~~~~~~~~g~~~~~s~~e~~~~~~~~~g~  236 (318)
T 2r6j_A          200 KVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGK  236 (318)
T ss_dssp             HHTTCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred             HHhcCccccCeEEEecCCCCccCHHHHHHHHHHHhCC
Confidence            99987654 445654 4 4789999999999999874

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.94  E-value=1.6e-26  Score=204.32  Aligned_cols=223  Identities=15%  Similarity=0.147  Sum_probs=157.6

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-C-----cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-D-----NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~-----~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      ++||+|+||||||+||++++++|+++|++|++++|++ .     ....+..+..     .+++++.+|++|++++.++++
T Consensus         2 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~-----~~v~~v~~D~~d~~~l~~a~~   76 (321)
T 3c1o_A            2 SHMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRS-----MGVTIIEGEMEEHEKMVSVLK   76 (321)
T ss_dssp             --CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHH-----TTCEEEECCTTCHHHHHHHHT
T ss_pred             CcccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhc-----CCcEEEEecCCCHHHHHHHHc
Confidence            3578999999999999999999999999999999986 2     1111211111     478999999999999999999


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      ++|+|||+++...              +.++.+++++|++.+++++||+ |   +|+..      .+|..         +
T Consensus        77 ~~d~vi~~a~~~~--------------~~~~~~l~~aa~~~g~v~~~v~-S---~~g~~------~~~~~---------~  123 (321)
T 3c1o_A           77 QVDIVISALPFPM--------------ISSQIHIINAIKAAGNIKRFLP-S---DFGCE------EDRIK---------P  123 (321)
T ss_dssp             TCSEEEECCCGGG--------------SGGGHHHHHHHHHHCCCCEEEC-S---CCSSC------GGGCC---------C
T ss_pred             CCCEEEECCCccc--------------hhhHHHHHHHHHHhCCccEEec-c---ccccC------ccccc---------c
Confidence            9999999998521              3446889999988764788882 3   45411      12222         1


Q ss_pred             cCC-CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCC-CCCCCCCC-CccccHH
Q 040253          157 KMT-GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNE-AHYPIIKQ-GQFVHLD  232 (338)
Q Consensus       157 ~~p-~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~i~v~  232 (338)
                      ..| .+.| .+|..+|.+++    +.+++++++||+.++|+...     .+.... ....+.. ..++.+.. +++++++
T Consensus       124 ~~p~~~~y-~sK~~~e~~~~----~~~~~~~~lrp~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  193 (321)
T 3c1o_A          124 LPPFESVL-EKKRIIRRAIE----AAALPYTYVSANCFGAYFVN-----YLLHPSPHPNRNDDIVIYGTGETKFVLNYEE  193 (321)
T ss_dssp             CHHHHHHH-HHHHHHHHHHH----HHTCCBEEEECCEEHHHHHH-----HHHCCCSSCCTTSCEEEETTSCCEEEEECHH
T ss_pred             CCCcchHH-HHHHHHHHHHH----HcCCCeEEEEeceecccccc-----ccccccccccccCceEEecCCCcceeEeeHH
Confidence            112 4579 99999999885    35899999999998875311     111000 0011111 12222222 6799999


Q ss_pred             HHHHHHHHhhcCCCC-CCceEE-e-cCCCCHHHHHHHHHHhCCC
Q 040253          233 DLCSAHIFLFEHPNA-KGRYIC-S-SHPATILELAKFLREKYPE  273 (338)
Q Consensus       233 D~a~~~~~~l~~~~~-~~~~~~-~-~~~~t~~e~~~~i~~~~~~  273 (338)
                      |+|++++.++..+.. ++.|++ + ++.+|+.|+++.+.+.+|.
T Consensus       194 Dva~~~~~~l~~~~~~g~~~~~~g~~~~~t~~e~~~~~~~~~g~  237 (321)
T 3c1o_A          194 DIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGL  237 (321)
T ss_dssp             HHHHHHHHHHHCGGGTTEEEECCCGGGEEEHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhCccccCeEEEEeCCCCcccHHHHHHHHHHHcCC
Confidence            999999999987654 445665 4 4789999999999999874

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.93  E-value=3.2e-26  Score=200.61  Aligned_cols=239  Identities=14%  Similarity=0.047  Sum_probs=166.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+............ ...++.++.+|++|.+++.++++       
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ-TGNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            3589999999999999999999999999999999865544332211100 01468999999999988877764       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||....     ...+..+..+++|+.++.++++++..    .....++|++||...+.              
T Consensus       104 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~--------------  169 (302)
T 1w6u_A          104 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET--------------  169 (302)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH--------------
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc--------------
Confidence            56999999985432     11223456889999999998877643    22257999999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.|.+++.++.+   +|++++++|||.++++....................  ..    
T Consensus       170 --------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--p~----  235 (302)
T 1w6u_A          170 --------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRI--PC----  235 (302)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTC--TT----
T ss_pred             --------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcC--Cc----
Confidence                    1124568999999999999999888   689999999999998743221111100000000111  11    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC---CCCceEEe-cCCCCHHHHHHHHHHhCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN---AKGRYICS-SHPATILELAKFLREKYP  272 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~-~~~~t~~e~~~~i~~~~~  272 (338)
                       .++++++|+|++++.++....   .+..|+++ +..++++++++.+.+..+
T Consensus       236 -~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~~~~~~~~~g  286 (302)
T 1w6u_A          236 -GRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGEFNDLRKVTK  286 (302)
T ss_dssp             -SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHSTTGGGGGCCH
T ss_pred             -CCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCccccchhhcc
Confidence             358899999999999997543   24467775 456777777777665543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.93  E-value=9.2e-26  Score=191.52  Aligned_cols=215  Identities=16%  Similarity=0.151  Sum_probs=156.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+........  .    ++++++.+|++|.+++.++++   ++|+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~--~----~~~~~~~~D~~~~~~~~~~~~~~~~id~   79 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE--C----PGIEPVCVDLGDWDATEKALGGIGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--S----TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh--c----cCCCcEEecCCCHHHHHHHHHHcCCCCE
Confidence            468999999999999999999999999999999986554433221  1    356788999999999888876   5899


Q ss_pred             EEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      |||+||.....     ..+..+..+++|+.++.++++++...    +..++||++||..++.  .               
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~--~---------------  142 (244)
T 1cyd_A           80 LVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV--T---------------  142 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--C---------------
T ss_pred             EEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcC--C---------------
Confidence            99999864321     11233467899999999998877553    2136899999987774  1               


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                           .++...|+.+|.+.|.+++.++++   .+++++++||+.++++...... ...+....  ..+.+  .     .+
T Consensus       143 -----~~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~--~~~~~--~-----~~  208 (244)
T 1cyd_A          143 -----FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKL--KERHP--L-----RK  208 (244)
T ss_dssp             -----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHH--HHHST--T-----SS
T ss_pred             -----CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHH--HhcCC--c-----cC
Confidence                 123458999999999999999887   4899999999999987532110 11111111  11111  1     57


Q ss_pred             cccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          228 FVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      +++++|+|++++.++..+..   +..+++.+
T Consensus       209 ~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g  239 (244)
T 1cyd_A          209 FAEVEDVVNSILFLLSDRSASTSGGGILVDA  239 (244)
T ss_dssp             CBCHHHHHHHHHHHHSGGGTTCCSSEEEEST
T ss_pred             CCCHHHHHHHHHHHhCchhhcccCCEEEECC
Confidence            99999999999999976432   34556644

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.93  E-value=2.1e-25  Score=193.02  Aligned_cols=241  Identities=15%  Similarity=0.139  Sum_probs=158.1

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHh-cCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLL-ELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |.. .+|+|+||||+|+||++++++|+++|++|++++|+.+......... .......++.++.+|++|++++.++++  
T Consensus         1 m~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (278)
T 1spx_A            1 MTRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTT   80 (278)
T ss_dssp             -CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHH
Confidence            543 4689999999999999999999999999999999865544433221 101112468999999999998888776  


Q ss_pred             -----CccEEEEecccCCCC---------CCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCcee-eeccCCC
Q 040253           77 -----GCTGVFHLATPMDFE---------SKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGT-LDVEEHR  138 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v-~~~~~~~  138 (338)
                           ++|+|||+||.....         ..+..+..+++|+.++.++++++...   . ..++|++||... +.     
T Consensus        81 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~-----  154 (278)
T 1spx_A           81 LGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISSIASGLH-----  154 (278)
T ss_dssp             HHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTTSSSS-----
T ss_pred             HHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-CCeEEEEeccccccc-----
Confidence                 899999999864321         22234567899999999998887653   1 169999999876 43     


Q ss_pred             CCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCC--hhH---HHhh
Q 040253          139 KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMP--PSL---ITAL  210 (338)
Q Consensus       139 ~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~--~~~---~~~~  210 (338)
                                       +.++...|+.+|...+.+.+.++.+   +|+++++++||.+.++.......  ...   ....
T Consensus       155 -----------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~  217 (278)
T 1spx_A          155 -----------------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTM  217 (278)
T ss_dssp             -----------------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHH
T ss_pred             -----------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHH
Confidence                             1123458999999999999998876   48999999999999875332100  000   0000


Q ss_pred             hhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC----CCCceEEe-cCCCCHHHHHHHHHHh
Q 040253          211 SPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN----AKGRYICS-SHPATILELAKFLREK  270 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~----~~~~~~~~-~~~~t~~e~~~~i~~~  270 (338)
                      ...... ...     .++++.+|+|++++.++..+.    .+..+++. +...++.++++.+.+.
T Consensus       218 ~~~~~~-~p~-----~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~~~~~~~~~~~~~~~  276 (278)
T 1spx_A          218 ATMKEC-VPA-----GVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLIMGLHCQDFAKL  276 (278)
T ss_dssp             HHHHHH-CTT-----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGC-----------
T ss_pred             HHHHhc-CCC-----cCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCcccccCcccccHHHH
Confidence            000010 111     358999999999999987532    24467774 5679999999988765

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.93  E-value=1.8e-25  Score=186.89  Aligned_cols=193  Identities=16%  Similarity=0.164  Sum_probs=141.8

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHH-HCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      +||++|+||||+|+||++++++|+ +.|++|++++|+++ ....+..      ...+++++.+|++|.+++.++++++|+
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~   76 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII------DHERVTVIEGSFQNPGXLEQAVTNAEV   76 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc------CCCceEEEECCCCCHHHHHHHHcCCCE
Confidence            345679999999999999999999 89999999999865 3332210      115789999999999999999999999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |||+|+..              |+. +.++++++++.+ .++||++||..+|+..   .....+.         ......
T Consensus        77 vv~~ag~~--------------n~~-~~~~~~~~~~~~-~~~iv~iSs~~~~~~~---~~~~~~~---------~~~~~~  128 (221)
T 3r6d_A           77 VFVGAMES--------------GSD-MASIVKALSRXN-IRRVIGVSMAGLSGEF---PVALEKW---------TFDNLP  128 (221)
T ss_dssp             EEESCCCC--------------HHH-HHHHHHHHHHTT-CCEEEEEEETTTTSCS---CHHHHHH---------HHHTSC
T ss_pred             EEEcCCCC--------------Chh-HHHHHHHHHhcC-CCeEEEEeeceecCCC---Ccccccc---------cccccc
Confidence            99999842              444 889999999988 8899999999887511   1000000         011112


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  240 (338)
                      +.|+.+|..+|..++    +.+++++++||+.++++........        . .....+    ...+++.+|+|++++.
T Consensus       129 ~~y~~~K~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~~~~--------~-~~~~~~----~~~~~~~~dvA~~~~~  191 (221)
T 3r6d_A          129 ISYVQGERQARNVLR----ESNLNYTILRLTWLYNDPEXTDYEL--------I-PEGAQF----NDAQVSREAVVKAIFD  191 (221)
T ss_dssp             HHHHHHHHHHHHHHH----HSCSEEEEEEECEEECCTTCCCCEE--------E-CTTSCC----CCCEEEHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH----hCCCCEEEEechhhcCCCCCcceee--------c-cCCccC----CCceeeHHHHHHHHHH
Confidence            279999999999885    4799999999999998732211100        0 000111    1348999999999999


Q ss_pred             hh--cCCC
Q 040253          241 LF--EHPN  246 (338)
Q Consensus       241 ~l--~~~~  246 (338)
                      ++  ..+.
T Consensus       192 l~~~~~~~  199 (221)
T 3r6d_A          192 ILHAADET  199 (221)
T ss_dssp             HHTCSCCG
T ss_pred             HHHhcChh
Confidence            99  7654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.93  E-value=4.8e-25  Score=188.88  Aligned_cols=221  Identities=18%  Similarity=0.122  Sum_probs=157.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM--EGHDVSSVVMDVTNTESVQNAVRSVHEQEG   89 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            358899999999999999999999999999999986554433221111  11468999999999998887765       


Q ss_pred             CccEEEEecccCC-CC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMD-FE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~-~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|+|||+||... ..     ..+.....+++|+.++.++++++..    .+ ..++|++||.+.+.  ..         
T Consensus        90 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~---------  157 (260)
T 3awd_A           90 RVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQK-QGVIVAIGSMSGLI--VN---------  157 (260)
T ss_dssp             CCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--CC---------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEecchhcc--cC---------
Confidence            7999999998643 11     1112246789999999999888754    34 57999999986553  10         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCC-CCCChhHHHhhhhcccCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLT-SSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                               +..|...|+.+|.+.|.+++.++++   +|++++++|||.++++... ...........  ..+.  ..  
T Consensus       158 ---------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~--~~~~--~~--  222 (260)
T 3awd_A          158 ---------RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAW--IAGT--PM--  222 (260)
T ss_dssp             ---------SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHH--HHTC--TT--
T ss_pred             ---------CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHH--HhcC--Cc--
Confidence                     1123468999999999999999888   6999999999999998643 10011111101  0111  11  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                         .++++.+|+|++++.++....   .+..|++++.
T Consensus       223 ---~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg  256 (260)
T 3awd_A          223 ---GRVGQPDEVASVVQFLASDAASLMTGAIVNVDAG  256 (260)
T ss_dssp             ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ---CCCCCHHHHHHHHHHHhCchhccCCCcEEEECCc
Confidence               458899999999999987532   2446777554

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.93  E-value=4.1e-25  Score=189.97  Aligned_cols=219  Identities=15%  Similarity=0.140  Sum_probs=144.1

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------   75 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------   75 (338)
                      ..+|+||||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.+++       
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK--KGFQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            3468999999999999999999999999999999986554433221111  1246899999999998887766       


Q ss_pred             -CCccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           76 -RGCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        76 -~~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       .++|+|||+||.....     ..+..+..+++|+.++.++++++    ++.+ .+++|++||...+.            
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~------------  156 (266)
T 1xq1_A           90 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV------------  156 (266)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC------------------
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccchhcc------------
Confidence             5789999999864321     12233467899999999998887    3445 68999999987764            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +..+...|+.+|...+.+++.++.++   |++++++|||.++++..........   ...... ....  
T Consensus       157 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~---~~~~~~-~~~~--  220 (266)
T 1xq1_A          157 ----------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEF---KKVVIS-RKPL--  220 (266)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------
T ss_pred             ----------CCCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhcCHHH---HHHHHh-cCCC--
Confidence                      11234589999999999999998875   8999999999999986432110000   000000 0011  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                         .++++.+|+|+++..++....   .+..+++.+
T Consensus       221 ---~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g  253 (266)
T 1xq1_A          221 ---GRFGEPEEVSSLVAFLCMPAASYITGQTICVDG  253 (266)
T ss_dssp             ------CCGGGGHHHHHHHTSGGGTTCCSCEEECCC
T ss_pred             ---CCCcCHHHHHHHHHHHcCccccCccCcEEEEcC
Confidence               358899999999999987532   234566644

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.93  E-value=4.2e-25  Score=187.46  Aligned_cols=214  Identities=16%  Similarity=0.175  Sum_probs=155.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      .+++|+||||+|+||++++++|+++|++|++++|+.+....+...  .    ++++++.+|++|.+++.++++   ++|+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~--~----~~~~~~~~D~~~~~~~~~~~~~~~~id~   79 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE--C----PGIEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--S----TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--c----CCCCEEEEeCCCHHHHHHHHHHcCCCCE
Confidence            468999999999999999999999999999999986544433221  1    256788999999999888876   5899


Q ss_pred             EEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      |||+||.....     ..+..+..+++|+.++.++.+++...    +...++|++||...+.                  
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------------  141 (244)
T 3d3w_A           80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------------  141 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------------
T ss_pred             EEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc------------------
Confidence            99999864321     11234568899999999988877543    2147899999987663                  


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCC--ChhHHHhhhhcccCCCCCCCCCCC
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSM--PPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                          +..+...|+.+|.+.|.+++.++.+   .|++++++|||.++++......  ........   ...  ..     .
T Consensus       142 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~---~~~--~~-----~  207 (244)
T 3d3w_A          142 ----AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTML---NRI--PL-----G  207 (244)
T ss_dssp             ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHH---HTC--TT-----C
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHH---hhC--CC-----C
Confidence                1124568999999999999999877   4899999999999987532110  11111111   011  11     4


Q ss_pred             ccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          227 QFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      ++++++|+|++++.++....   .+..|++++
T Consensus       208 ~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g  239 (244)
T 3d3w_A          208 KFAEVEHVVNAILFLLSDRSGMTTGSTLPVEG  239 (244)
T ss_dssp             SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             CCcCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence            68999999999999997542   244677754

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.93  E-value=3.5e-24  Score=184.55  Aligned_cols=216  Identities=18%  Similarity=0.119  Sum_probs=162.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|+||.+++++|+++|++|++++|+.+..........     .++.++.+|++|.+++.++++       
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG-----RGAVHHVVDLTNEVSVRALIDFTIDTFG   84 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC-----TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----CCeEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999887665544331     568899999999998888775       


Q ss_pred             CccEEEEecccCCC-C------CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDF-E------SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|++||+||.... .      ..+..+..+++|+.++.++++++    ++.+ ..++|++||...+.            
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~------------  151 (271)
T 3tzq_B           85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG-GGAIVNISSATAHA------------  151 (271)
T ss_dssp             CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS------------
T ss_pred             CCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECCHHHcC------------
Confidence            79999999996532 1      12233468899999999999888    5555 67999999987663            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.++++...............    .....  
T Consensus       152 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~----~~~~~--  215 (271)
T 3tzq_B          152 ----------AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFA----THHLA--  215 (271)
T ss_dssp             ----------BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---CHHHHHHHH----TTSTT--
T ss_pred             ----------CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCCHHHHHHHH----hcCCC--
Confidence                      1124568999999999999999988   5899999999999998754333222221111    11111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCC---CCceEEecC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSSH  256 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~~  256 (338)
                         .++...+|+|+++++++.....   +..+++.+.
T Consensus       216 ---~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  249 (271)
T 3tzq_B          216 ---GRIGEPHEIAELVCFLASDRAAFITGQVIAADSG  249 (271)
T ss_dssp             ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ---CCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence               4588999999999999975432   446677544

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.93  E-value=4e-25  Score=189.20  Aligned_cols=224  Identities=13%  Similarity=0.142  Sum_probs=158.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+..........     .++.++.+|++|++++.++++       
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~g   81 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----PAAYAVQMDVTRQDSIDAAIAATVEHAG   81 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999999999999998765554433321     468999999999998887775       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++...    +...++|++||...+.              
T Consensus        82 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  147 (259)
T 4e6p_A           82 GLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR--------------  147 (259)
T ss_dssp             SCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc--------------
Confidence            799999999964421     12334567889999999999887543    1135899999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-CCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-AHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  223 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.++++..... ...+........... ..+...
T Consensus       148 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  218 (259)
T 4e6p_A          148 --------GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDGV-DALFARYENRPRGEKKRLVGEA  218 (259)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHHH-HHHHHHHHTCCTTHHHHHHHHH
T ss_pred             --------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhhh-hhhhhhhccCChHHHHHHHhcc
Confidence                    11245689999999999999999875   89999999999998753210 000000000000000 000000


Q ss_pred             -CCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          224 -KQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       224 -~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                       ...++.+++|+|+++++++.....   +..+++++
T Consensus       219 ~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdg  254 (259)
T 4e6p_A          219 VPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDG  254 (259)
T ss_dssp             STTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred             CCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECc
Confidence             115699999999999999864332   45778754

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.93  E-value=8.6e-25  Score=187.06  Aligned_cols=207  Identities=16%  Similarity=0.181  Sum_probs=156.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+......           .++.++.+|++|++++.++++       
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   95 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD-----------PDIHTVAGDISKPETADRIVREGIERFG   95 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSS-----------TTEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-----------CceEEEEccCCCHHHHHHHHHHHHHHCC
Confidence            46899999999999999999999999999999997654221           468999999999998887765       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++    ++.+ ..++|++||..++...            
T Consensus        96 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~------------  162 (260)
T 3un1_A           96 RIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG-SGHIVSITTSLVDQPM------------  162 (260)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCTTTTSCB------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhccCC------------
Confidence            799999999865421     22334567889999999999877    4455 6799999997665310            


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.++++....    ......    ......    
T Consensus       163 --------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----~~~~~~----~~~~p~----  222 (260)
T 3un1_A          163 --------VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPA----ETHSTL----AGLHPV----  222 (260)
T ss_dssp             --------TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCG----GGHHHH----HTTSTT----
T ss_pred             --------CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCH----HHHHHH----hccCCC----
Confidence                    11245689999999999999999987   8999999999999886432    111111    111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                       .++.+++|+|++++.+.+.....| .+++++
T Consensus       223 -~r~~~~~dva~av~~L~~~~~itG~~i~vdG  253 (260)
T 3un1_A          223 -GRMGEIRDVVDAVLYLEHAGFITGEILHVDG  253 (260)
T ss_dssp             -SSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHhcccCCCCCcEEEECC
Confidence             468899999999999965544444 677754

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.92  E-value=1.7e-24  Score=184.45  Aligned_cols=218  Identities=18%  Similarity=0.154  Sum_probs=156.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+|+||||+|+||++++++|+++|++|++++|+.+.......... .....++.++.+|++|++++.++++       +
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHW-HAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHS-TTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999999999999998655444332220 1112578999999999998888775       7


Q ss_pred             ccEEEEecccCCCCC--------CCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           78 CTGVFHLATPMDFES--------KDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~--------~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      +|+|||+||......        .+..+..+++|+.++.++++++.    +.+ .+++|++||...+.  .         
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~--~---------  148 (250)
T 2cfc_A           81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIASVASLV--A---------  148 (250)
T ss_dssp             CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C---------
T ss_pred             CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhcc--C---------
Confidence            999999998654221        12344678899999977766553    345 68999999987664  1         


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYP  221 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~  221 (338)
                                 ..+...|+.+|.+.+.+++.++.++   |++++++|||.++++...... ...+..   ..... ... 
T Consensus       149 -----------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~---~~~~~-~~~-  212 (250)
T 2cfc_A          149 -----------FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRD---QVLAR-IPQ-  212 (250)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHH---HHHTT-CTT-
T ss_pred             -----------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHH---HHHhc-CCC-
Confidence                       1245689999999999999998876   899999999999998642100 011111   01111 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                          ..+.+.+|+|++++.++..+..   +..+++.+
T Consensus       213 ----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g  245 (250)
T 2cfc_A          213 ----KEIGTAAQVADAVMFLAGEDATYVNGAALVMDG  245 (250)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSTTCTTCCSCEEEEST
T ss_pred             ----CCCcCHHHHHHHHHHHcCchhhcccCCEEEECC
Confidence                4588999999999999976432   33566654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.92  E-value=1.4e-25  Score=194.45  Aligned_cols=239  Identities=16%  Similarity=0.155  Sum_probs=170.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+....... +........++.++.+|++|++++.++++      
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999999999999998766554433 22222112378999999999998877764      


Q ss_pred             -CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||....      ...+..+..+++|+.++.++++++...-   ...++|++||...+.             
T Consensus        90 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-------------  156 (281)
T 3svt_A           90 GRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN-------------  156 (281)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS-------------
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC-------------
Confidence             68999999996221      1122335688899999999988775432   145999999987764             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~  222 (338)
                               +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++...... ........  ....  ..  
T Consensus       157 ---------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~--~~~~--p~--  221 (281)
T 3svt_A          157 ---------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDY--AMCT--PL--  221 (281)
T ss_dssp             ---------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHH--HHHC--SS--
T ss_pred             ---------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHH--HhcC--CC--
Confidence                     11245689999999999999999876   699999999999887532100 00000000  0011  11  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCC---CCceEEe-cCCCC-HHHHHHHHHHhCCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICS-SHPAT-ILELAKFLREKYPE  273 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~-~~~~t-~~e~~~~i~~~~~~  273 (338)
                         .++.+++|+|+++++++.....   +..+++. +...+ ..++++.+.+.++.
T Consensus       222 ---~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~  274 (281)
T 3svt_A          222 ---PRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQMLRRGPDFSAMLEPVFGR  274 (281)
T ss_dssp             ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGSCCCCCHHHHHHHHCT
T ss_pred             ---CCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCChhcccCCcchhccccccCC
Confidence               4688999999999999975432   4567774 44444 67788888877664

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.92  E-value=1.6e-24  Score=184.28  Aligned_cols=221  Identities=13%  Similarity=0.103  Sum_probs=150.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |...+|+|+||||+|+||++++++|+++|++|+++ .|++............  ...++.++.+|++|++++.++++   
T Consensus         1 M~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~   78 (247)
T 2hq1_A            1 MQLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA--AGINVVVAKGDVKNPEDVENMVKTAM   78 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHH--TTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            66667999999999999999999999999999998 4565544433222111  11568999999999998887765   


Q ss_pred             ----CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ----GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                          ++|+|||+||....     ...+..+..+++|+.++.++++++..    .+ ..+||++||...+.  .       
T Consensus        79 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~-------  148 (247)
T 2hq1_A           79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK-SGKIINITSIAGII--G-------  148 (247)
T ss_dssp             HHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC---------------
T ss_pred             HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhcc--C-------
Confidence                79999999986431     12334557899999998888877653    34 57999999975442  1       


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                   ..+...|+.+|.+.|.+++.++.++   ++++++++||.+.++.... .........   .. ....
T Consensus       149 -------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~---~~-~~~~  210 (247)
T 2hq1_A          149 -------------NAGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV-LPDKVKEMY---LN-NIPL  210 (247)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-SCHHHHHHH---HT-TSTT
T ss_pred             -------------CCCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh-cchHHHHHH---Hh-hCCC
Confidence                         0134589999999999999998875   8999999999987653211 111111111   01 1111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                           .++++++|+|+++..++..+.   .+..|++++.
T Consensus       211 -----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  244 (247)
T 2hq1_A          211 -----KRFGTPEEVANVVGFLASDDSNYITGQVINIDGG  244 (247)
T ss_dssp             -----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -----CCCCCHHHHHHHHHHHcCcccccccCcEEEeCCC
Confidence                 458999999999999987532   2446787553

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.92  E-value=1.2e-24  Score=186.64  Aligned_cols=224  Identities=16%  Similarity=0.159  Sum_probs=157.0

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ..+|+||||||+|+||++++++|+++|++|++++|+.+............ ...++.++.+|++|++++.++++      
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEK-FGVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh-cCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34689999999999999999999999999999999865544332211100 01468899999999998887765      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.  .          
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~----------  150 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNASICAVQ--P----------  150 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C----------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcC--C----------
Confidence             799999999865321     112335678899999999888764    334 57999999987774  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCCh-------hHHHhhhhcccC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPP-------SLITALSPITRN  216 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~-------~~~~~~~~~~~~  216 (338)
                                ..+...|+.+|.+.+.+.+.++.+   +|+++++++||.++++........       ............
T Consensus       151 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (263)
T 3ai3_A          151 ----------LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADE  220 (263)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHH
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhc
Confidence                      123458999999999999999887   589999999999998752110000       000000000000


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      ....     .++++++|+|++++.++..+.   .+..|++++
T Consensus       221 ~~p~-----~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdg  257 (263)
T 3ai3_A          221 HAPI-----KRFASPEELANFFVFLCSERATYSVGSAYFVDG  257 (263)
T ss_dssp             HCTT-----CSCBCHHHHHHHHHHHTSTTCTTCCSCEEEEST
T ss_pred             CCCC-----CCCcCHHHHHHHHHHHcCccccCCCCcEEEECC
Confidence            0111     468999999999999997543   244677744

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.92  E-value=5e-25  Score=188.54  Aligned_cols=221  Identities=15%  Similarity=0.159  Sum_probs=158.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC-CCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+ ++...........  ...++.++.+|++|++++.++++      
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRA--DGGDAAFFAADLATSEACQQLVDEFVAKF   83 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHH--TTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999999999999998 6655443322111  12578999999999998888776      


Q ss_pred             -CccEEEEeccc-CCCC-----CCCccchhhhhhhHHHHHHHHHHHhC--------CCccEEEEecCceeeeccCCCCCC
Q 040253           77 -GCTGVFHLATP-MDFE-----SKDPENEVIRPTINGMVSIMRACKNA--------KTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 -~~d~vi~~a~~-~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                       ++|+|||+||. ....     ..+..+..+++|+.++.++++++...        +...++|++||...+.  ..    
T Consensus        84 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--~~----  157 (258)
T 3afn_B           84 GGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHT--GG----  157 (258)
T ss_dssp             SSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHH--CC----
T ss_pred             CCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhcc--CC----
Confidence             79999999986 3211     11223467889999999988866421        1126899999986653  00    


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                     ..+...|+.+|.+.|.+++.++.++   |++++++|||.++++..... ...+....   .. ..
T Consensus       158 ---------------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~---~~-~~  217 (258)
T 3afn_B          158 ---------------GPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK-TQDVRDRI---SN-GI  217 (258)
T ss_dssp             ---------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC-CHHHHHHH---HT-TC
T ss_pred             ---------------CCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc-CHHHHHHH---hc-cC
Confidence                           1245689999999999999988775   89999999999999864332 11111111   11 11


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC----CCCceEEecCC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN----AKGRYICSSHP  257 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~----~~~~~~~~~~~  257 (338)
                      ..     .++++++|+|++++.++....    .+..|+++++.
T Consensus       218 ~~-----~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~  255 (258)
T 3afn_B          218 PM-----GRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ  255 (258)
T ss_dssp             TT-----CSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred             CC-----CcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence            11     468999999999999997532    24467776543

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.92  E-value=2.6e-25  Score=183.24  Aligned_cols=188  Identities=14%  Similarity=0.085  Sum_probs=144.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC---ccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG---CTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~---~d~v   81 (338)
                      +|+|+||||+|+||++++++|+ +|++|++++|+..                   .+.+|++|++++.+++++   +|+|
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-------------------~~~~D~~~~~~~~~~~~~~~~~d~v   62 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITNIDSIKKMYEQVGKVDAI   62 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-------------------SEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-------------------ceeeecCCHHHHHHHHHHhCCCCEE
Confidence            4589999999999999999999 9999999999753                   357899999988888764   8999


Q ss_pred             EEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhh
Q 040253           82 FHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRS  155 (338)
Q Consensus        82 i~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~  155 (338)
                      ||+||......     .+.....++.|+.++.++++++...- ...++|++||...+.                      
T Consensus        63 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~----------------------  120 (202)
T 3d7l_A           63 VSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED----------------------  120 (202)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS----------------------
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC----------------------
Confidence            99999643211     11223567899999999999987762 026899999976653                      


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHH
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDD  233 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D  233 (338)
                      +..+...|+.+|...|.+++.++.++  |++++++||+.++++...         .     +...     ..+++++++|
T Consensus       121 ~~~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~~---------~-----~~~~-----~~~~~~~~~d  181 (202)
T 3d7l_A          121 PIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDK---------L-----EPFF-----EGFLPVPAAK  181 (202)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHHH---------H-----GGGS-----TTCCCBCHHH
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchhh---------h-----hhhc-----cccCCCCHHH
Confidence            11245689999999999999988764  899999999999987421         0     0000     1257899999


Q ss_pred             HHHHHHHhhcCCCCCCceEE
Q 040253          234 LCSAHIFLFEHPNAKGRYIC  253 (338)
Q Consensus       234 ~a~~~~~~l~~~~~~~~~~~  253 (338)
                      +|++++.++.....+..|++
T Consensus       182 va~~~~~~~~~~~~G~~~~v  201 (202)
T 3d7l_A          182 VARAFEKSVFGAQTGESYQV  201 (202)
T ss_dssp             HHHHHHHHHHSCCCSCEEEE
T ss_pred             HHHHHHHhhhccccCceEec
Confidence            99999998865544557765

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.92  E-value=7e-25  Score=189.34  Aligned_cols=220  Identities=17%  Similarity=0.122  Sum_probs=156.8

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      ..+|+||||||+|+||++++++|+++|++|++++| +.+....... +...   ..++.++.+|++|++++.++++    
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL---GAQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999 4433333221 2111   2568899999999998888775    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceee-eccCCCCCCcCCCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTL-DVEEHRKPVYDETS  146 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~-~~~~~~~~~~~e~~  146 (338)
                         ++|+|||+||.....     ..+..+..+++|+.++.++++++...- ..++||++||...+ .  .          
T Consensus        96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~--~----------  163 (274)
T 1ja9_A           96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT--G----------  163 (274)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC--S----------
T ss_pred             HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccC--C----------
Confidence               799999999865421     112234678999999999998886541 02689999998776 3  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCC-----------CCC-hhHHHhhh
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTS-----------SMP-PSLITALS  211 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~-----------~~~-~~~~~~~~  211 (338)
                                ..+...|+.+|.+.|.+++.++.++   +++++++|||.++++....           ... ....   .
T Consensus       164 ----------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~  230 (274)
T 1ja9_A          164 ----------IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKID---E  230 (274)
T ss_dssp             ----------CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHH---H
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHH---H
Confidence                      1134589999999999999998875   8999999999998764220           000 0000   0


Q ss_pred             hcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          212 PITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                      .. .....     ..++++++|+|+++..++..+.   .+..|+++++
T Consensus       231 ~~-~~~~~-----~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG  272 (274)
T 1ja9_A          231 GL-ANMNP-----LKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG  272 (274)
T ss_dssp             HH-HHTST-----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HH-HhcCC-----CCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence            00 00011     1468999999999999997543   2446787654

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.92  E-value=2.7e-24  Score=182.61  Aligned_cols=218  Identities=16%  Similarity=0.169  Sum_probs=158.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ++|++|||||+|+||++++++|+++|++|++++|+. +..+........  ...++.++.+|++|.+++.++++      
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKA--KGVDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999988854 333332221111  12578999999999998887765      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++    ++.+ ..++|++||...+.             
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-------------  146 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLSSVVGAV-------------  146 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH-------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhcC-------------
Confidence             799999999965421     12233468899999999999987    4445 57999999987663             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +.++...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++..... ........    ....+.   
T Consensus       147 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~-~~~~~~~~----~~~~p~---  209 (246)
T 3osu_A          147 ---------GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDAL-SDELKEQM----LTQIPL---  209 (246)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSCS-CHHHHHHH----HTTCTT---
T ss_pred             ---------CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCccccc-CHHHHHHH----HhcCCC---
Confidence                     1124568999999999999999885   489999999999998764332 22111111    111111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC---CCceEEecC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSSH  256 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~~  256 (338)
                        .++.+.+|+|+++++++.....   +..+++++.
T Consensus       210 --~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG  243 (246)
T 3osu_A          210 --ARFGQDTDIANTVAFLASDKAKYITGQTIHVNGG  243 (246)
T ss_dssp             --CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             --CCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCC
Confidence              4688999999999999875433   446777543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.92  E-value=5.3e-24  Score=185.38  Aligned_cols=224  Identities=14%  Similarity=0.075  Sum_probs=159.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      .+|+|+||||+|+||.+++++|+++|++|++++|+.+.........     ..++.++.+|++|.+++.++++   ++|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            3689999999999999999999999999999999876554433221     2579999999999999988876   6799


Q ss_pred             EEEecccCCC---CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           81 VFHLATPMDF---ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        81 vi~~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      +||+||....   ...+..+..+++|+.++.++++++.... .+++|++||...+...........+..         +.
T Consensus        90 lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~-~~riv~isS~~~~~~~~~~~~~~~~~~---------~~  159 (291)
T 3rd5_A           90 LINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRL-TDRVVTVSSMAHWPGRINLEDLNWRSR---------RY  159 (291)
T ss_dssp             EEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGE-EEEEEEECCGGGTTCCCCSSCTTCSSS---------CC
T ss_pred             EEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhheeEeechhhccCCCCccccccccc---------CC
Confidence            9999996542   2334556889999999999999999887 679999999877642211111111111         22


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHc---C--ccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHH
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEEN---N--IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLD  232 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~---~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  232 (338)
                      .+...|+.||.+.+.+.+.+++++   |  +++++++||.+..+........ ..   .....      ....+-..+.+
T Consensus       160 ~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~~~~-~~---~~~~~------~~~~~~~~~~~  229 (291)
T 3rd5_A          160 SPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRK-LG---DALMS------AATRVVATDAD  229 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC------------------------------CHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCccccccccchH-HH---HHHHH------HHHHHHhCCHH
Confidence            345689999999999999988775   4  9999999999976653221100 00   00000      00012244699


Q ss_pred             HHHHHHHHhhcCCCCCCceE
Q 040253          233 DLCSAHIFLFEHPNAKGRYI  252 (338)
Q Consensus       233 D~a~~~~~~l~~~~~~~~~~  252 (338)
                      |+|++++.++..+...|.|+
T Consensus       230 ~~A~~~~~l~~~~~~~G~~~  249 (291)
T 3rd5_A          230 FGARQTLYAASQDLPGDSFV  249 (291)
T ss_dssp             HHHHHHHHHHHSCCCTTCEE
T ss_pred             HHHHHHHHHHcCCCCCCcee
Confidence            99999999998866666653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.92  E-value=1e-24  Score=185.49  Aligned_cols=219  Identities=15%  Similarity=0.128  Sum_probs=156.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++|+||||+|+||++++++|+++|++|++++|+.+............ ...++.++.+|++|.+++.++++       
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANK-YGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhh-cCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999865544332211100 01468999999999998888775       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++++++    ++.+ .++||++||...+.  ..          
T Consensus        85 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~~----------  151 (248)
T 2pnf_A           85 GIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNISSVVGFT--GN----------  151 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEECCHHHHH--CC----------
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhcC--CC----------
Confidence            799999999865421     11233467899999997776655    3345 67999999976553  11          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                                .+...|+.+|...+.+.+.+++++   +++++++|||.++++.... .........   ... ...    
T Consensus       152 ----------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~-~~~~~~~~~---~~~-~~~----  212 (248)
T 2pnf_A          152 ----------VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV-LSEEIKQKY---KEQ-IPL----  212 (248)
T ss_dssp             ----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG-SCHHHHHHH---HHT-CTT----
T ss_pred             ----------CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh-ccHHHHHHH---Hhc-CCC----
Confidence                      134589999999999999988764   8999999999999875332 111111111   111 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                       .++++++|+|+++..++....   .+..|++++.
T Consensus       213 -~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg  246 (248)
T 2pnf_A          213 -GRFGSPEEVANVVLFLCSELASYITGEVIHVNGG  246 (248)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence             458999999999999987532   2446777543

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.4e-24  Score=186.51  Aligned_cols=226  Identities=20%  Similarity=0.162  Sum_probs=153.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCC-----CCCcEEEEecccCCCCCchhhhCC-
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPK-----ASTHLTLWKADLAEEGNFDEPIRG-   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~-   77 (338)
                      .+++|+||||+|+||++++++|+++|++|++++|+.+.............     ...++.++.+|++|.+++.++++. 
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            35799999999999999999999999999999998655443322111000     014678999999999888777653 


Q ss_pred             ------c-cEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCC
Q 040253           78 ------C-TGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        78 ------~-d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                            + |+|||+||.....     ..+..+..+++|+.++.++++++...    +...+||++||...+.        
T Consensus        86 ~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------  157 (264)
T 2pd6_A           86 QACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKV--------  157 (264)
T ss_dssp             HHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH--------
T ss_pred             HHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhcc--------
Confidence                  4 9999999865421     22334567899999999999987653    1136899999976553        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                    +..+...|+.+|.+.+.+++.++.+   +|++++++|||.++++..... ....   ....... .
T Consensus       158 --------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~---~~~~~~~-~  218 (264)
T 2pd6_A          158 --------------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKV-PQKV---VDKITEM-I  218 (264)
T ss_dssp             --------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC--------------CTGGG-C
T ss_pred             --------------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhhc-CHHH---HHHHHHh-C
Confidence                          1124568999999999999999887   699999999999999864321 1100   0000000 0


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec-CCCCHH
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS-HPATIL  261 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~-~~~t~~  261 (338)
                      ..     ..+++++|+|++++.++....  . +..+++++ ..++..
T Consensus       219 ~~-----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~  260 (264)
T 2pd6_A          219 PM-----GHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGLFMAEN  260 (264)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC-----
T ss_pred             CC-----CCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCceeccc
Confidence            11     358899999999999987532  2 33566644 444433

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.92  E-value=5.9e-24  Score=181.99  Aligned_cols=210  Identities=16%  Similarity=0.179  Sum_probs=154.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+..........     .++.++.+|++|++++.++++       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~g   80 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTAFG   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----cCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999999999999998755444322211     357899999999998888776       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++.+++    ++.+ ..++|++||...+.  .           
T Consensus        81 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~-----------  146 (260)
T 1nff_A           81 GLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLA--G-----------  146 (260)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C-----------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEeehhhcC--C-----------
Confidence            799999999865421     12234568899999997665554    4445 67999999987763  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               ..+...|+.+|...+.+.+.++.+   +|++++++|||.++++...  ...      ....  ..     .
T Consensus       147 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~--~~~------~~~~--~~-----~  202 (260)
T 1nff_A          147 ---------TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTD--WVP------EDIF--QT-----A  202 (260)
T ss_dssp             ---------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGT--TSC------TTCS--CC-----S
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccc--cch------hhHH--hC-----c
Confidence                     113458999999999999998877   4899999999999987532  100      0000  00     1


Q ss_pred             CCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                      ..++.+.+|+|++++.++....   .+..+++.+.
T Consensus       203 ~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG  237 (260)
T 1nff_A          203 LGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG  237 (260)
T ss_dssp             SSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence            1458899999999999987533   2446677543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.92  E-value=1.1e-24  Score=185.91  Aligned_cols=218  Identities=16%  Similarity=0.130  Sum_probs=137.7

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|+||||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++    
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA--DGGTAISVAVDVSDPESAKAMADRTLA   82 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            445678999999999999999999999999999999987665554332211  12578999999999998887765    


Q ss_pred             ---CccEEEEecccCC--------CCCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCC
Q 040253           77 ---GCTGVFHLATPMD--------FESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 ---~~d~vi~~a~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                         ++|+|||+||...        ....+..+..+++|+.++.++.+++    .+.+ ..++|++||...+.        
T Consensus        83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--------  153 (253)
T 3qiv_A           83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAAWL--------  153 (253)
T ss_dssp             HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC-------------
T ss_pred             HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCccccC--------
Confidence               7999999998632        1112234568899999976666554    4445 57999999987762        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                       +...|+.+|.+.+.+++.++.++   |+++++++||.++++...........   ... ....
T Consensus       154 -----------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~---~~~-~~~~  212 (253)
T 3qiv_A          154 -----------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTTTPKEMV---DDI-VKGL  212 (253)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC----------------------------
T ss_pred             -----------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhcCcHHHH---HHH-hccC
Confidence                             23479999999999999999886   79999999999998754322111110   000 0001


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      .     ...+..++|+|++++.++.....   +..|++++
T Consensus       213 ~-----~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdg  247 (253)
T 3qiv_A          213 P-----LSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDG  247 (253)
T ss_dssp             ------------CCHHHHHHHHHHSGGGTTCCSCEEEC--
T ss_pred             C-----CCCCCCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence            1     13577899999999999975432   45677744

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.92  E-value=4e-24  Score=183.26  Aligned_cols=219  Identities=18%  Similarity=0.119  Sum_probs=158.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+............ ...++.++.+|++|++++.++++       
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQL-GSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-SSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-CCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999999876655443322211 11478999999999998887764       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++...    + ..++|++||.....  .           
T Consensus        88 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~--~-----------  153 (262)
T 3pk0_A           88 GIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSITGPI--T-----------  153 (262)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCSBTTT--B-----------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEechhhcc--C-----------
Confidence            799999999965421     12233457899999999988877554    4 57999999975431  0           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +.++...|+.+|.+.+.+.+.++.+   +|+++++++||.++++.............     ......    
T Consensus       154 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~-----~~~~p~----  216 (262)
T 3pk0_A          154 --------GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLENGEEYIASM-----ARSIPA----  216 (262)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTTCHHHHHHH-----HTTSTT----
T ss_pred             --------CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccccCHHHHHHH-----HhcCCC----
Confidence                    1124568999999999999999988   58999999999999874322111111111     111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                       .++...+|+|+++++++....  . +..+++.+
T Consensus       217 -~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG  249 (262)
T 3pk0_A          217 -GALGTPEDIGHLAAFLATKEAGYITGQAIAVDG  249 (262)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence             458899999999999987543  2 44566744

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.92  E-value=1.2e-23  Score=180.73  Aligned_cols=218  Identities=16%  Similarity=0.157  Sum_probs=158.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|+|+||||+|+||++++++|+++|++|++++|+.+..........     .++.++.+|++|.+++.++++    
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~   82 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKG   82 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            33456899999999999999999999999999999998877655433221     478999999999998888775    


Q ss_pred             ---CccEEEEecccCCCC-----------CCCccchhhhhhhHHHHHHHHHHHhC----------CCccEEEEecCceee
Q 040253           77 ---GCTGVFHLATPMDFE-----------SKDPENEVIRPTINGMVSIMRACKNA----------KTVRRLVFTSSAGTL  132 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----------~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~~~~~v~~Ss~~v~  132 (338)
                         ++|+|||+||.....           ..+..+..+++|+.++.++++++...          + ..++|++||...+
T Consensus        83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~  161 (265)
T 2o23_A           83 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ-RGVIINTASVAAF  161 (265)
T ss_dssp             HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC-CEEEEEECCTHHH
T ss_pred             HCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCC-CcEEEEeCChhhc
Confidence               799999999865421           11234567889999999999887653          4 5799999998776


Q ss_pred             eccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHh
Q 040253          133 DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITA  209 (338)
Q Consensus       133 ~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~  209 (338)
                      .                      +..+...|+.+|.+.+.+++.++.++   |+++++++||.+.++..... .......
T Consensus       162 ~----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~  218 (265)
T 2o23_A          162 E----------------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL-PEKVCNF  218 (265)
T ss_dssp             H----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC-----------CH
T ss_pred             C----------------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcccccc-CHHHHHH
Confidence            4                      11245689999999999999888774   89999999999987753211 1100000


Q ss_pred             hhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          210 LSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                      .   ...   .+.  ...+++.+|+|++++.+++.....| .+.+.+
T Consensus       219 ~---~~~---~~~--~~~~~~~~dva~~~~~l~~~~~~~G~~i~vdg  257 (265)
T 2o23_A          219 L---ASQ---VPF--PSRLGDPAEYAHLVQAIIENPFLNGEVIRLDG  257 (265)
T ss_dssp             H---HHT---CSS--SCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred             H---HHc---CCC--cCCCCCHHHHHHHHHHHhhcCccCceEEEECC
Confidence            0   011   010  0357899999999999997655444 556643

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.92  E-value=4.9e-24  Score=184.47  Aligned_cols=227  Identities=16%  Similarity=0.156  Sum_probs=153.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ++|++|||||+|+||++++++|+++|++|++++|+. +............ ...++.++.+|++|.+++.++++      
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGL-SSGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTT-CSSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhc-cCCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            468999999999999999999999999999999843 3333332222111 12578999999999998887764      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++    ++.+ ..++|++||...+.             
T Consensus       103 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~-------------  168 (281)
T 3v2h_A          103 GGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIASAHGLV-------------  168 (281)
T ss_dssp             SSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECCccccc-------------
Confidence             799999999965422     12234567899999999999886    3344 57899999987653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC--CCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN--EAHYP  221 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~--~~~~~  221 (338)
                               +......|+.+|.+.+.+.+.++.++   |+++++++||.+.++............. ......  ...+.
T Consensus       169 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~  238 (281)
T 3v2h_A          169 ---------ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTR-GITEEQVINEVML  238 (281)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------------------------
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhc-CCCHHHHHHHHHH
Confidence                     11234589999999999999998875   8999999999999875432211110000 000000  00011


Q ss_pred             CC-CCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          222 II-KQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       222 ~~-~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      .. ...++++++|+|++++.++....   .+..+++.+
T Consensus       239 ~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdG  276 (281)
T 3v2h_A          239 KGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDG  276 (281)
T ss_dssp             -CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEEST
T ss_pred             hcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECC
Confidence            11 12579999999999999997643   244567654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.92  E-value=7.1e-24  Score=181.25  Aligned_cols=216  Identities=17%  Similarity=0.189  Sum_probs=151.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+.........     ..++.++.+|++|.+++.++++       
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFRNADVTNEADATAALAFAKQEFG   80 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999877654432211     1468899999999998887765       


Q ss_pred             CccEEEEecccCCCCC---------CCccchhhhhhhHHHHHHHHHHHhC---------CCccEEEEecCceeeeccCCC
Q 040253           77 GCTGVFHLATPMDFES---------KDPENEVIRPTINGMVSIMRACKNA---------KTVRRLVFTSSAGTLDVEEHR  138 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~---------~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~~v~~Ss~~v~~~~~~~  138 (338)
                      ++|++||+||......         .+..+..+++|+.++.++++++...         +...++|++||...+.     
T Consensus        81 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~-----  155 (257)
T 3tpc_A           81 HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD-----  155 (257)
T ss_dssp             CCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-----
T ss_pred             CCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc-----
Confidence            7999999999654211         1234567899999999999887643         1146899999987764     


Q ss_pred             CCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhccc
Q 040253          139 KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITR  215 (338)
Q Consensus       139 ~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  215 (338)
                                       +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++........ ..   .....
T Consensus       156 -----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~-~~---~~~~~  214 (257)
T 3tpc_A          156 -----------------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGMPQD-VQ---DALAA  214 (257)
T ss_dssp             -----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC------------------C
T ss_pred             -----------------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccCCHH-HH---HHHHh
Confidence                             1124568999999999999999888   589999999999988754321110 00   00001


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                      .   .+.  ..++.+.+|+|++++.+++.....| .+++.+
T Consensus       215 ~---~p~--~~r~~~~~dva~~v~~l~s~~~itG~~i~vdG  250 (257)
T 3tpc_A          215 S---VPF--PPRLGRAEEYAALVKHICENTMLNGEVIRLDG  250 (257)
T ss_dssp             C---SSS--SCSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred             c---CCC--CCCCCCHHHHHHHHHHHcccCCcCCcEEEECC
Confidence            1   000  0358899999999999998654445 556644

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.92  E-value=2.5e-24  Score=184.37  Aligned_cols=220  Identities=15%  Similarity=0.101  Sum_probs=155.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhh-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPI-------   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------   75 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+....... +...   ..++.++.+|++|++++.+++       
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK---GFKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---TCEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999999999999998655443322 2111   247889999999998887776       


Q ss_pred             -CCccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           76 -RGCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        76 -~~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       .++|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.            
T Consensus        85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------  151 (260)
T 2ae2_A           85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGAL------------  151 (260)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTS------------
T ss_pred             CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcc------------
Confidence             4799999999964321     122344678899999999988873    344 67999999987653            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYP  221 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~  221 (338)
                                +.++...|+.+|...+.+.+.++.++   |+++++++||.+.++...... ............. .... 
T Consensus       152 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~~~~-  219 (260)
T 2ae2_A          152 ----------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLID-RCAL-  219 (260)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHH-TSTT-
T ss_pred             ----------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHh-cCCC-
Confidence                      11234589999999999999999886   899999999999876321100 0000000000001 1111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                          .++++.+|+|++++.++....   .+..+++.+
T Consensus       220 ----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdg  252 (260)
T 2ae2_A          220 ----RRMGEPKELAAMVAFLCFPAASYVTGQIIYVDG  252 (260)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCCCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence                468999999999999986532   234566644

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.92  E-value=2.9e-24  Score=183.37  Aligned_cols=218  Identities=15%  Similarity=0.119  Sum_probs=154.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcE-EEEecccCCCCCchhhh------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHL-TLWKADLAEEGNFDEPI------R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~Dl~d~~~~~~~~------~   76 (338)
                      .+++|+||||+|+||++++++|+++|++|++++|+.+..+.......     .++ .++.+|++|.+++.+++      .
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAEAVA   84 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHHhhC
Confidence            35789999999999999999999999999999998665444322211     356 88999999998887776      4


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++++++    ++.+ .++||++||...+.  ..          
T Consensus        85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--~~----------  151 (254)
T 2wsb_A           85 PVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSMSGTI--VN----------  151 (254)
T ss_dssp             CCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--CC----------
T ss_pred             CCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecchhcc--CC----------
Confidence            799999999865421     11223467889999977776655    3445 68999999987663  11          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  223 (338)
                              +..|...|+.+|.+.|.+++.++.++   |++++++|||.++++...... .....   ...... ...   
T Consensus       152 --------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~---~~~~~~-~~~---  216 (254)
T 2wsb_A          152 --------RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELF---ETWLDM-TPM---  216 (254)
T ss_dssp             --------SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHH---HHHHHT-STT---
T ss_pred             --------CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHH---HHHHhc-CCC---
Confidence                    11234689999999999999988875   899999999999987522100 00010   000011 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                        .++++++|+|++++.++....  . +..+++.+.
T Consensus       217 --~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  250 (254)
T 2wsb_A          217 --GRCGEPSEIAAAALFLASPAASYVTGAILAVDGG  250 (254)
T ss_dssp             --SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             --CCCCCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence              468999999999999986532  2 345666543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.92  E-value=1.2e-23  Score=178.95  Aligned_cols=215  Identities=16%  Similarity=0.105  Sum_probs=153.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      ..++||||||+|+||++++++|+++|++|++++|+.+....+.....     .++.++.+|++|.+++.++++   ++|+
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~   87 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSNLDI   87 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            46899999999999999999999999999999998766555443322     478999999999998888776   6899


Q ss_pred             EEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      |||+||....     ...+..+..+++|+.++.++++++..    .+ ..+||++||...+.                  
T Consensus        88 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~------------------  148 (249)
T 3f9i_A           88 LVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKR-YGRIINISSIVGIA------------------  148 (249)
T ss_dssp             EEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCC--------------------
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEEEccHHhcc------------------
Confidence            9999986431     22344568899999999999887643    33 56999999987764                  


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcc
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF  228 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                          +..+...|+.+|.+.+.+++.++.++   |+++++++||.+.++...............   +.  ..     .++
T Consensus       149 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~---~~--~~-----~~~  214 (249)
T 3f9i_A          149 ----GNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQ---KI--PL-----GTY  214 (249)
T ss_dssp             ----CCSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CCHHHHHHHHH---HC--TT-----CSC
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccCHHHHHHHHh---cC--CC-----CCC
Confidence                11245689999999999999988874   899999999999877543221111111111   11  11     468


Q ss_pred             ccHHHHHHHHHHhhcCCCC---CCceEEecC
Q 040253          229 VHLDDLCSAHIFLFEHPNA---KGRYICSSH  256 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~~---~~~~~~~~~  256 (338)
                      .+++|+|++++.++.....   +..+++++.
T Consensus       215 ~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG  245 (249)
T 3f9i_A          215 GIPEDVAYAVAFLASNNASYITGQTLHVNGG  245 (249)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence            8999999999999975432   446677553

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.92  E-value=2.9e-24  Score=181.97  Aligned_cols=206  Identities=18%  Similarity=0.214  Sum_probs=154.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------Cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------GC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~   78 (338)
                      +|+||||||+|+||++++++|+++|++|++++|+.+ .             ..+.++.+|++|.+++.++++      ++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   67 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-------------EDLIYVEGDVTREEDVRRAVARAQEEAPL   67 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-------------SSSEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-------------cceEEEeCCCCCHHHHHHHHHHHHhhCCc
Confidence            589999999999999999999999999999999865 1             356889999999998888876      78


Q ss_pred             cEEEEecccCCCCC-----CC----ccchhhhhhhHHHHHHHHHHHhCC---------CccEEEEecCceeeeccCCCCC
Q 040253           79 TGVFHLATPMDFES-----KD----PENEVIRPTINGMVSIMRACKNAK---------TVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        79 d~vi~~a~~~~~~~-----~~----~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                      |+|||+|+......     .+    ..+..++.|+.++.++++++....         ...+||++||...+.  .    
T Consensus        68 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~--~----  141 (242)
T 1uay_A           68 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE--G----  141 (242)
T ss_dssp             EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH--C----
T ss_pred             eEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc--C----
Confidence            99999998644211     11    345778999999999999876431         123999999988775  1    


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE  217 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  217 (338)
                                      ..+...|+.+|.+.+.+++.++.+.   |++++++|||.++++.... .........   ....
T Consensus       142 ----------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~---~~~~  201 (242)
T 1uay_A          142 ----------------QIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG-LPEKAKASL---AAQV  201 (242)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHT-SCHHHHHHH---HTTC
T ss_pred             ----------------CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhc-cchhHHHHH---HhhC
Confidence                            1245689999999999999988775   8999999999999875332 111111111   1111


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                       .+    ...+++++|+|++++.++......| .+++.+
T Consensus       202 -~~----~~~~~~~~dva~~~~~l~~~~~~~G~~~~v~g  235 (242)
T 1uay_A          202 -PF----PPRLGRPEEYAALVLHILENPMLNGEVVRLDG  235 (242)
T ss_dssp             -CS----SCSCCCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred             -CC----cccCCCHHHHHHHHHHHhcCCCCCCcEEEEcC
Confidence             11    0358899999999999998744444 667744

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.91  E-value=9.9e-24  Score=179.30  Aligned_cols=215  Identities=15%  Similarity=0.125  Sum_probs=158.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+..........     .++..+.+|++|.+++.++++       
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPESIEAVLKAITDEFG   82 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999999999999998766555443322     357889999999998887765       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++.+++..    .+ ..++|++||...+.              
T Consensus        83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~--------------  147 (248)
T 3op4_A           83 GVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVGSVVGTM--------------  147 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH--------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhcC--------------
Confidence            799999999965421     2233456889999999999888743    34 57999999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+..... .........  ..  ...    
T Consensus       148 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~--~~--~p~----  210 (248)
T 3op4_A          148 --------GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKAL-NDEQRTATL--AQ--VPA----  210 (248)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTS-CHHHHHHHH--HT--CTT----
T ss_pred             --------CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhc-CHHHHHHHH--hc--CCC----
Confidence                    11245689999999999999998875   89999999999987653321 111111110  01  111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC---CCceEEecC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA---KGRYICSSH  256 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~~  256 (338)
                       .++.+.+|+|+++++++.....   +..+++.+.
T Consensus       211 -~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG  244 (248)
T 3op4_A          211 -GRLGDPREIASAVAFLASPEAAYITGETLHVNGG  244 (248)
T ss_dssp             -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCCcCHHHHHHHHHHHcCCccCCccCcEEEECCC
Confidence             4688999999999999875432   445666543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.91  E-value=6.3e-24  Score=180.98  Aligned_cols=217  Identities=15%  Similarity=0.201  Sum_probs=154.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+............   .++.++.+|++|.+++.++++       
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999999865544433222211   478999999999988887765       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCc-cEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTV-RRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~-~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++..+.+++    ++.+ . ++||++||...+.  .          
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~~iv~isS~~~~~--~----------  148 (251)
T 1zk4_A           82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKG-LGASIINMSSIEGFV--G----------  148 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEEECCGGGTS--C----------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCCEEEEeCCchhcc--C----------
Confidence            599999999864321     11223467899999877765554    4445 4 7999999987764  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHH-----HcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE-----ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~-----~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                ..+...|+.+|.+.|.+++.++.     ..|++++++|||.++++.... .......  .. ....... 
T Consensus       149 ----------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~-~~~~~~~--~~-~~~~~~~-  213 (251)
T 1zk4_A          149 ----------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDD-LPGAEEA--MS-QRTKTPM-  213 (251)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHT-STTHHHH--HT-STTTCTT-
T ss_pred             ----------CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhh-cCchhhh--HH-HhhcCCC-
Confidence                      12456899999999999988776     358999999999999875322 1111000  00 0111111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                          .++++.+|+|++++.++....   .+..+++++
T Consensus       214 ----~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g  246 (251)
T 1zk4_A          214 ----GHIGEPNDIAYICVYLASNESKFATGSEFVVDG  246 (251)
T ss_dssp             ----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCcCHHHHHHHHHHHcCcccccccCcEEEECC
Confidence                458999999999999997543   234566654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.91  E-value=9.6e-24  Score=179.41  Aligned_cols=220  Identities=15%  Similarity=0.113  Sum_probs=162.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |+..+|+++||||+|+||++++++|+++|++|++++|+.+............  ..++.++.+|++|.+++.++++    
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            1 MSLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK--GFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            6777899999999999999999999999999999999876655544332211  2578999999999988877664    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|+|||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.           
T Consensus        79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~-----------  146 (247)
T 3lyl_A           79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR-WGRIISIGSVVGSA-----------  146 (247)
T ss_dssp             TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH-----------
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhcc-----------
Confidence               589999999965421     2233456889999999998887643    33 46999999987663           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +.++...|+.+|.+.+.+.+.++.++   |+++++++||.+.++..... ........    ...... 
T Consensus       147 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~----~~~~~~-  209 (247)
T 3lyl_A          147 -----------GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL-TDEQKSFI----ATKIPS-  209 (247)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS-CHHHHHHH----HTTSTT-
T ss_pred             -----------CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc-cHHHHHHH----hhcCCC-
Confidence                       11245689999999999999988874   89999999999987754332 11111111    111111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                          .++.+++|+|+++..++.....   +..+++.+
T Consensus       210 ----~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg  242 (247)
T 3lyl_A          210 ----GQIGEPKDIAAAVAFLASEEAKYITGQTLHVNG  242 (247)
T ss_dssp             ----CCCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCcCHHHHHHHHHHHhCCCcCCccCCEEEECC
Confidence                4689999999999999875432   44667744

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.91  E-value=1.7e-24  Score=183.78  Aligned_cols=217  Identities=18%  Similarity=0.194  Sum_probs=151.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEE-EecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVKHLLELPKASTHLTL-WKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~d~~~~~~~~~------   76 (338)
                      ||+|+||||+|+||++++++|+++|++|+++ +|+.+............  ..++.. +.+|++|.+++.++++      
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRR--GSPLVAVLGANLLEAEAATALVHQAAEVL   78 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCceEEEEeccCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999999999999998 67755444332211111  135566 8999999988877653      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHH----HHHhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMR----ACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~----~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+||.....     ..+..+..+++|+.++.++.+    .+++.+ .++||++||...+.  .          
T Consensus        79 ~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~----------  145 (245)
T 2ph3_A           79 GGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSVVGIL--G----------  145 (245)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH--C----------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeChhhcc--C----------
Confidence             799999999865321     122335678999999655554    444555 68999999976553  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                ..+...|+.+|.+.+.+.+.+++++   |++++++|||.++++.... .........   ... ...   
T Consensus       146 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~---~~~-~~~---  207 (245)
T 2ph3_A          146 ----------NPGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTER-LPQEVKEAY---LKQ-IPA---  207 (245)
T ss_dssp             ----------CSSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-SCHHHHHHH---HHT-CTT---
T ss_pred             ----------CCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhh-cCHHHHHHH---Hhc-CCC---
Confidence                      1134589999999999999988875   8999999999998875322 111111111   011 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                        .++++++|+|++++.++..+.   .+..|+++++
T Consensus       208 --~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg  241 (245)
T 2ph3_A          208 --GRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGG  241 (245)
T ss_dssp             --CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             --CCCcCHHHHHHHHHHHhCcccccccCCEEEECCC
Confidence              468899999999999997543   2446777654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.91  E-value=4.9e-24  Score=182.07  Aligned_cols=218  Identities=16%  Similarity=0.133  Sum_probs=158.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+..+........  ...++.++.+|++|.+++.++++       
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ--AGGKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999987665544332211  12578999999999988877764       


Q ss_pred             CccEEEEecccCCCC----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 GCTGVFHLATPMDFE----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      ++|++||+||.....    ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.               
T Consensus        89 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~---------------  152 (256)
T 3gaf_A           89 KITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG-GGAILNISSMAGEN---------------  152 (256)
T ss_dssp             CCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTC---------------
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHHHcC---------------
Confidence            799999999865421    112345678999999999998863    334 57999999987663               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +..+...|+.+|...+.+.+.++.++   |+++++++||.+.++..............    ......     
T Consensus       153 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~----~~~~p~-----  216 (256)
T 3gaf_A          153 -------TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATVLTPEIERAM----LKHTPL-----  216 (256)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHCCHHHHHHH----HTTCTT-----
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhccCHHHHHHH----HhcCCC-----
Confidence                   11245689999999999999999875   89999999999987642111111111111    111111     


Q ss_pred             CccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      .++.+.+|+|+++++++....   .+..+++.+
T Consensus       217 ~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdg  249 (256)
T 3gaf_A          217 GRLGEAQDIANAALFLCSPAAAWISGQVLTVSG  249 (256)
T ss_dssp             SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             CCCCCHHHHHHHHHHHcCCcccCccCCEEEECC
Confidence            468899999999999997533   244677754

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.91  E-value=5.4e-24  Score=182.78  Aligned_cols=220  Identities=15%  Similarity=0.193  Sum_probs=155.9

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH-HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK-KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .++|+++||||+|+||.+++++|+++|++|++++|+.... +.......  ....++.++.+|++|.+++.++++     
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYK--DVEERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTG--GGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH--hcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            3578999999999999999999999999999998875432 22222221  112579999999999998887765     


Q ss_pred             --CccEEEEecccC--CC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 --GCTGVFHLATPM--DF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 --~~d~vi~~a~~~--~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                        ++|+|||+||..  ..     ...+..+..+++|+.++.++++++    ++.+ ..++|++||.+.++  ..      
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss~~~~~--~~------  153 (264)
T 3i4f_A           83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGFQGADS--AP------  153 (264)
T ss_dssp             HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTTGGG--CC------
T ss_pred             hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEeechhcc--cC------
Confidence              799999999932  11     112233567899999999999887    4445 57999999875542  10      


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +..+...|+.+|.+.+.+++.++.+   .|+++++++||.++++.......    ..... .......
T Consensus       154 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~----~~~~~-~~~~~p~  216 (264)
T 3i4f_A          154 ------------GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEATIQ----EARQL-KEHNTPI  216 (264)
T ss_dssp             ------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCCHH----HHHHC--------
T ss_pred             ------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhccH----HHHHH-HhhcCCC
Confidence                        1124568999999999999999887   58999999999999876433211    11110 0111111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                           .++.+.+|+|++++.++.....   +..+++++
T Consensus       217 -----~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdG  249 (264)
T 3i4f_A          217 -----GRSGTGEDIARTISFLCEDDSDMITGTIIEVTG  249 (264)
T ss_dssp             ------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESC
T ss_pred             -----CCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcC
Confidence                 4588999999999999975432   44667743

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.91  E-value=1.3e-23  Score=179.41  Aligned_cols=219  Identities=13%  Similarity=0.054  Sum_probs=156.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhhC--
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPIR--   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~--   76 (338)
                      |...+|+|+||||+|+||.+++++|+++|++ |++++|+... ...+.+..... ..++.++.+|++|. +++.++++  
T Consensus         1 m~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~-~~~~~l~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~   78 (254)
T 1sby_A            1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-TALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKI   78 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-HHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH-HHHHHHHHhCC-CceEEEEEEecCCChHHHHHHHHHH
Confidence            6667899999999999999999999999996 9999998643 22232222111 24789999999998 77776654  


Q ss_pred             -----CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC------CccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -----GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK------TVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                           ++|+|||+||...   .+..+..+++|+.++.++++++...-      ...++|++||...+.            
T Consensus        79 ~~~~g~id~lv~~Ag~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  143 (254)
T 1sby_A           79 FDQLKTVDILINGAGILD---DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------------  143 (254)
T ss_dssp             HHHHSCCCEEEECCCCCC---TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS------------
T ss_pred             HHhcCCCCEEEECCccCC---HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc------------
Confidence                 7999999999653   24456889999999999998875421      125899999987763            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhH-HHhhhhcccCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSL-ITALSPITRNEAHYP  221 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~  221 (338)
                                +..+...|+.+|.+.+.+++.++.+   +|+++++++||.+.++.........- ........       
T Consensus       144 ----------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-------  206 (254)
T 1sby_A          144 ----------AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELL-------  206 (254)
T ss_dssp             ----------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHH-------
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHH-------
Confidence                      1123458999999999999998876   58999999999998864221100000 00000000       


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCCCCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~  255 (338)
                        ......+++|+|++++.+++....+..|++.+
T Consensus       207 --~~~~~~~~~dvA~~i~~~~~~~~~G~~~~v~g  238 (254)
T 1sby_A          207 --LSHPTQTSEQCGQNFVKAIEANKNGAIWKLDL  238 (254)
T ss_dssp             --TTSCCEEHHHHHHHHHHHHHHCCTTCEEEEET
T ss_pred             --hcCCCCCHHHHHHHHHHHHHcCCCCCEEEEeC
Confidence              01234589999999999997655555777754

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.91  E-value=3.1e-24  Score=183.84  Aligned_cols=220  Identities=16%  Similarity=0.137  Sum_probs=156.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +|+||||||+|+||++++++|+++|++|++++|+.+....... +...   ..++..+.+|++|.+++.++++       
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE---GLSVTGTVCHVGKAEDRERLVAMAVNLHG   90 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999998655443322 2111   2468899999999988877665       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|+|||+||....      ...+..+..+++|+.++.++++++.    +.+ ..++|++||...+.             
T Consensus        91 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-------------  156 (260)
T 2zat_A           91 GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG-GGSVLIVSSVGAYH-------------  156 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS-------------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEechhhcC-------------
Confidence            79999999986421      1112235678999999988888764    445 67999999987774             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~  222 (338)
                               +..+...|+.+|...+.+.+.++.++   |+++++++||.+.++...... ........    ......  
T Consensus       157 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~----~~~~~~--  221 (260)
T 2zat_A          157 ---------PFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYM----KESLRI--  221 (260)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHH----HHHHTC--
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHH----HhcCCC--
Confidence                     11245689999999999999998875   899999999999876421100 00000000    000011  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC---CCCceEEec-CCCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS-HPAT  259 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~-~~~t  259 (338)
                         .++.+.+|+|+++++++....   .+..+++++ ...|
T Consensus       222 ---~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~~~s  259 (260)
T 2zat_A          222 ---RRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASR  259 (260)
T ss_dssp             ---SSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTCCCC
T ss_pred             ---CCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCcccc
Confidence               468999999999999987543   244677744 4443

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.91  E-value=8e-24  Score=181.57  Aligned_cols=218  Identities=16%  Similarity=0.059  Sum_probs=154.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+||||||+|+||++++++|+++|++|++++|+.+........  ..   .++.++.+|++|.+++.++++       +
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--~~---~~~~~~~~D~~d~~~v~~~~~~~~~~~g~   86 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAG--LE---NGGFAVEVDVTKRASVDAAMQKAIDALGG   86 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT--CT---TCCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--Hh---cCCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            47999999999999999999999999999999986544433221  11   257889999999998888775       7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||.....     ..+..+..+++|+.++.++++++...    +...++|++||...+.  .            
T Consensus        87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~------------  152 (263)
T 3ak4_A           87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV--G------------  152 (263)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS--C------------
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc--C------------
Confidence            99999999864321     11234567889999999988877542    2147999999986653  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh---h----HHHhhhhcccCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP---S----LITALSPITRNEA  218 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~---~----~~~~~~~~~~~~~  218 (338)
                              .++...|+.+|...+.+.+.++.++   |++++++|||.++++........   .    .......... ..
T Consensus       153 --------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  223 (263)
T 3ak4_A          153 --------APLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVS-LT  223 (263)
T ss_dssp             --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHH-TC
T ss_pred             --------CCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHh-cC
Confidence                    1134589999999999999988875   89999999999988642110000   0    0000000001 11


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      ..     .++++.+|+|++++.++....   .+..+++.+
T Consensus       224 p~-----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdg  258 (263)
T 3ak4_A          224 PL-----GRIEEPEDVADVVVFLASDAARFMTGQGINVTG  258 (263)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCccccCCCCCEEEECc
Confidence            11     468999999999999997542   244677754

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.91  E-value=9.6e-24  Score=180.75  Aligned_cols=224  Identities=15%  Similarity=0.126  Sum_probs=154.5

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ..+|+||||||+|+||++++++|+++|++|++++|+.+................++.++.+|++|++++.++++      
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            34689999999999999999999999999999999865544332221100001268999999999998888775      


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++.+++.    +.+ ..++|++||...+.  .           
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~-----------  150 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGSVTLLR--P-----------  150 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C-----------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhcC--C-----------
Confidence            599999999854321     122345678999999977766553    445 67999999987763  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh-----hHH-Hh-hhhcccCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP-----SLI-TA-LSPITRNE  217 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-----~~~-~~-~~~~~~~~  217 (338)
                               ..+...|+.+|...+.+.+.++.++   |+++++++||.++++........     ... .. .... ...
T Consensus       151 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  220 (260)
T 2z1n_A          151 ---------WQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSM-ASR  220 (260)
T ss_dssp             ---------CTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC------------------------C
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHH-Hhc
Confidence                     1234589999999999999988875   89999999999998764311000     000 00 0000 000


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ..     ..++.+.+|+|+++++++....  ..| .+++.+
T Consensus       221 ~p-----~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdG  256 (260)
T 2z1n_A          221 IP-----MGRVGKPEELASVVAFLASEKASFITGAVIPVDG  256 (260)
T ss_dssp             CT-----TSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             CC-----CCCccCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence            01     1358899999999999987532  234 556644

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.91  E-value=6.2e-24  Score=182.47  Aligned_cols=227  Identities=16%  Similarity=0.177  Sum_probs=158.3

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..+|+||||||+|+||++++++|+++|++|++++|+...... .+.+....  ..++.++.+|++|.+++.++++     
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF--GVKTKAYQCDVSNTDIVTKTIQQIDAD   89 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhc--CCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999999999999997655332 22221100  1468999999999988877664     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|+|||+||.....     ..+..+..+++|+.++.++++++...    +...+||++||...+.....      ..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~------~~  163 (265)
T 1h5q_A           90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS------SL  163 (265)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE------ET
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc------cc
Confidence              489999999865421     11233457899999999999887543    21378999999876531100      00


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                      .         +..+...|+.+|.+.+.+++.++.++   |++++++|||.++++..... .........   .. ...  
T Consensus       164 ~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~~~---~~-~~~--  227 (265)
T 1h5q_A          164 N---------GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM-DKKIRDHQA---SN-IPL--  227 (265)
T ss_dssp             T---------EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-CHHHHHHHH---HT-CTT--
T ss_pred             c---------ccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc-chhHHHHHH---hc-Ccc--
Confidence            0         22356789999999999999998774   89999999999998753321 111111111   11 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                         .++++.+|+|++++.++....   .+..|++.++
T Consensus       228 ---~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG  261 (265)
T 1h5q_A          228 ---NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGG  261 (265)
T ss_dssp             ---SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTT
T ss_pred             ---cCCCCHHHHHHHHHhhccCchhcCcCcEEEecCC
Confidence               358899999999999987543   2446777543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.91  E-value=1.4e-23  Score=181.65  Aligned_cols=227  Identities=16%  Similarity=0.155  Sum_probs=156.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC----------cHHHHHHHhc-CCCCCCcEEEEecccCCCCCch
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD----------NKKKVKHLLE-LPKASTHLTLWKADLAEEGNFD   72 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~   72 (338)
                      .+|+++||||+|+||.+++++|+++|++|++++|+.+          +.+.++.... ......++.++.+|++|.+++.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   93 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAALR   93 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHH
Confidence            3589999999999999999999999999999998421          2222222111 1111257899999999999888


Q ss_pred             hhhC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccC
Q 040253           73 EPIR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        73 ~~~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~  136 (338)
                      ++++       ++|++||+||.....     ..+..+..+++|+.++.++++++..    .+...++|++||...+.   
T Consensus        94 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---  170 (280)
T 3pgx_A           94 ELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK---  170 (280)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS---
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc---
Confidence            7764       799999999965421     2233456788999999999888743    22246899999987663   


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhh---
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITAL---  210 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~---  210 (338)
                                         +......|+.+|.+.+.+.+.++.+   +|+++++++||.+.++.....   ......   
T Consensus       171 -------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---~~~~~~~~~  228 (280)
T 3pgx_A          171 -------------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPE---AMMEIFARH  228 (280)
T ss_dssp             -------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHH---HHHHHHHHC
T ss_pred             -------------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchh---hhhhhhhcC
Confidence                               1123558999999999999999987   589999999999998764321   111101   


Q ss_pred             hhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          211 SPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                      .............. ..+.+++|+|+++++++....  . +..+++.+.
T Consensus       229 ~~~~~~~~~~~~~~-~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  276 (280)
T 3pgx_A          229 PSFVHSFPPMPVQP-NGFMTADEVADVVAWLAGDGSGTLTGTQIPVDKG  276 (280)
T ss_dssp             GGGGGGSCCBTTBC-SSCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTT
T ss_pred             chhhhhhhhcccCC-CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            00001000111111 258999999999999987543  2 445677554

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.91  E-value=5.1e-24  Score=183.90  Aligned_cols=219  Identities=12%  Similarity=0.109  Sum_probs=156.8

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ...+|++|||||+|+||++++++|+++|++|++++|+.+..........     .++..+.+|++|.+++.++++     
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~   98 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTAK   98 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            3446899999999999999999999999999999998765554433221     578999999999998887765     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|++||+||.....     ..+..+..+++|+.++.++.+++.    +.+ ..++|++||...+.            
T Consensus        99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------  165 (277)
T 4dqx_A           99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG-GGSIINTTSYTATS------------  165 (277)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT-CEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhCc------------
Confidence              799999999964321     122344677899999998888774    333 56999999987663            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC---CChhHHHhhhhcccCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS---MPPSLITALSPITRNEAH  219 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~  219 (338)
                                +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++.....   .... ....... .....
T Consensus       166 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~-~~~~~~~-~~~~~  233 (277)
T 4dqx_A          166 ----------AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDP-AKLRSDF-NARAV  233 (277)
T ss_dssp             ----------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCH-HHHHHHH-HTTST
T ss_pred             ----------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccch-hHHHHHH-HhcCc
Confidence                      11245689999999999999998876   89999999999976531000   0000 0000000 11111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      .     .++.+.+|+|+++++++....   .+..+++.+
T Consensus       234 ~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG  267 (277)
T 4dqx_A          234 M-----DRMGTAEEIAEAMLFLASDRSRFATGSILTVDG  267 (277)
T ss_dssp             T-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             c-----cCCcCHHHHHHHHHHHhCCccCCCcCCEEEECC
Confidence            1     458899999999999987543   244667744

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.91  E-value=9.7e-24  Score=180.87  Aligned_cols=222  Identities=17%  Similarity=0.145  Sum_probs=150.9

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|++|||||+|+||++++++|+++|++|++++|+.+....+.....     .++.++.+|++|.+++.++++    
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~   79 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG-----DAALAVAADISKEADVDAAVEAALS   79 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHH
Confidence            44557899999999999999999999999999999998776555543322     578999999999998877765    


Q ss_pred             ---CccEEEEecccCCC-C-----CCCccchhhhhhhHHHHHHHHHHHhCC-------CccEEEEecCceeeeccCCCCC
Q 040253           77 ---GCTGVFHLATPMDF-E-----SKDPENEVIRPTINGMVSIMRACKNAK-------TVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~-~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-------~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                         ++|++||+||.... .     ..+..+..+++|+.++.++++++...-       ...++|++||...+.       
T Consensus        80 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-------  152 (261)
T 3n74_A           80 KFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR-------  152 (261)
T ss_dssp             HHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS-------
T ss_pred             hcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC-------
Confidence               78999999986541 1     122334678899999988888764331       134799999976653       


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE  217 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  217 (338)
                                     +.+....|+.+|.+.+.+.+.++.++   |+++++++||.+.++................. ...
T Consensus       153 ---------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~-~~~  216 (261)
T 3n74_A          153 ---------------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKF-RDS  216 (261)
T ss_dssp             ---------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC--------------------------
T ss_pred             ---------------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHH-hhc
Confidence                           11234579999999999999999884   89999999999987754321110000000000 000


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      .     ...++++.+|+|+++++++....   .+..+++.+
T Consensus       217 ~-----~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdg  252 (261)
T 3n74_A          217 I-----PMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDG  252 (261)
T ss_dssp             C-----TTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             C-----CcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecC
Confidence            1     11468999999999999996433   244567744

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.91  E-value=1.9e-23  Score=181.64  Aligned_cols=219  Identities=20%  Similarity=0.151  Sum_probs=158.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||.+++++|+++|++|++++|+.+............. ..++.++.+|++|.+++.++++       
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999998877665544332211 1478999999999988777654       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.  .           
T Consensus       119 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS~~~~~--~-----------  184 (293)
T 3rih_A          119 ALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSSITGPV--T-----------  184 (293)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECCSBTTT--B-----------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeChhhcc--C-----------
Confidence            689999999965421     122335678999999999998873    444 57999999976431  0           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              ...+...|+.+|...+.+.+.++.++   |+++++++||.++++...... ....   ..... ....    
T Consensus       185 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~-~~~~---~~~~~-~~p~----  247 (293)
T 3rih_A          185 --------GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDMG-EEYI---SGMAR-SIPM----  247 (293)
T ss_dssp             --------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHTC-HHHH---HHHHT-TSTT----
T ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhcc-HHHH---HHHHh-cCCC----
Confidence                    11245689999999999999998874   899999999999987532111 1111   11111 1111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                       ..+...+|+|+++++++....  . +..+++.+
T Consensus       248 -~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG  280 (293)
T 3rih_A          248 -GMLGSPVDIGHLAAFLATDEAGYITGQAIVVDG  280 (293)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence             357789999999999986533  2 44566644

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.91  E-value=1.9e-23  Score=177.18  Aligned_cols=198  Identities=13%  Similarity=0.146  Sum_probs=151.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-------eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-------AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      +|+||||||+|+||++++++|+++|+       +|++++|+.+....+......  ...++.++.+|++|++++.++++ 
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA--EGALTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc--cCCeeeEEEecCCCHHHHHHHHHH
Confidence            57899999999999999999999999       999999986554444332211  12578999999999988887765 


Q ss_pred             ------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCC
Q 040253           77 ------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 ------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                            ++|+|||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.        
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--------  150 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVAATK--------  150 (244)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--------
T ss_pred             HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEEecchhcC--------
Confidence                  699999999865421     1223456789999999999888743    34 57999999987764        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                    +..+...|+.+|.+.+.+++.++.+   +|++++++|||.++++..... .           ... 
T Consensus       151 --------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~-----------~~~-  203 (244)
T 2bd0_A          151 --------------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV-D-----------DEM-  203 (244)
T ss_dssp             --------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC-C-----------STT-
T ss_pred             --------------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhc-c-----------ccc-
Confidence                          1124568999999999999888765   489999999999998864321 0           000 


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                            ...+++.+|+|++++.++..+.
T Consensus       204 ------~~~~~~~~dva~~~~~l~~~~~  225 (244)
T 2bd0_A          204 ------QALMMMPEDIAAPVVQAYLQPS  225 (244)
T ss_dssp             ------GGGSBCHHHHHHHHHHHHTSCT
T ss_pred             ------cccCCCHHHHHHHHHHHHhCCc
Confidence                  1368999999999999998654

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.91  E-value=1.6e-23  Score=178.33  Aligned_cols=218  Identities=14%  Similarity=0.131  Sum_probs=146.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|+++||||+|+||++++++|+++|++|++++|+.+..       .     .++..+.+|++|++++.++++    
T Consensus         3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-------~-----~~~~~~~~D~~d~~~~~~~~~~~~~   70 (250)
T 2fwm_X            3 MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE-------Q-----YPFATEVMDVADAAQVAQVCQRLLA   70 (250)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS-------C-----CSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh-------c-----CCceEEEcCCCCHHHHHHHHHHHHH
Confidence            545578999999999999999999999999999999986521       0     137889999999998887775    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|+|||+||.....     ..+..+..+++|+.++.++++++    ++.+ ..++|++||...+.           
T Consensus        71 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~-----------  138 (250)
T 2fwm_X           71 ETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVASDAAHT-----------  138 (250)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS-----------
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECchhhCC-----------
Confidence               799999999864421     12234568899999999998887    3444 57999999987663           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhh-hcccCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALS-PITRNEAHY  220 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~-~~~~~~~~~  220 (338)
                                 +..+...|+.+|...+.+.+.++.+.   |+++++++||.++++.........  .... ........+
T Consensus       139 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~--~~~~~~~~~~~~~~  205 (250)
T 2fwm_X          139 -----------PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSD--DAEEQRIRGFGEQF  205 (250)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------
T ss_pred             -----------CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccCh--hHHHHHHhhhhhcc
Confidence                       11245689999999999999998874   899999999999987533211000  0000 000000000


Q ss_pred             C-CCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          221 P-IIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       221 ~-~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      . .....++.+.+|+|+++++++....  ..| .+.+.+
T Consensus       206 ~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG  244 (250)
T 2fwm_X          206 KLGIPLGKIARPQEIANTILFLASDLASHITLQDIVVDG  244 (250)
T ss_dssp             ----------CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             cccCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence            0 0001358899999999999987643  234 556644

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.91  E-value=2.6e-23  Score=177.71  Aligned_cols=220  Identities=15%  Similarity=0.072  Sum_probs=156.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ--FPGQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--STTCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999987765555443322  12578999999999998887764       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH-----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC-----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~-----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|++||+||....     ...+..+..+++|+.++.++.+++     ++.+ ..++|++||...+.             
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-------------  148 (257)
T 3imf_A           83 RIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGI-KGNIINMVATYAWD-------------  148 (257)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGGS-------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC-CcEEEEECchhhcc-------------
Confidence            78999999985432     122334567899999999998887     3333 57999999987663             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH----cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE----NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                               +......|+.+|...+.+.+.++.+    +|+++++++||.+.++......... ....... ......  
T Consensus       149 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~-~~~~~~~-~~~~p~--  215 (257)
T 3imf_A          149 ---------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWIS-EEMAKRT-IQSVPL--  215 (257)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC--------CCSHHH-HTTSTT--
T ss_pred             ---------CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccC-HHHHHHH-HhcCCC--
Confidence                     1123458999999999988888754    3899999999999887533211000 0000000 011111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                         .++...+|+|+++++++....   .+..+++.+
T Consensus       216 ---~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG  248 (257)
T 3imf_A          216 ---GRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDG  248 (257)
T ss_dssp             ---CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ---CCCcCHHHHHHHHHHHcCchhcCccCCEEEECC
Confidence               468899999999999997543   244566644

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.91  E-value=3e-23  Score=179.72  Aligned_cols=224  Identities=16%  Similarity=0.164  Sum_probs=157.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc---------HHHHHHHhc-CCCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN---------KKKVKHLLE-LPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|++..         .+.+..... ......++.++.+|++|.+++.+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            36899999999999999999999999999999997431         222222111 11112578999999999998887


Q ss_pred             hhC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCC
Q 040253           74 PIR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEH  137 (338)
Q Consensus        74 ~~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~  137 (338)
                      +++       ++|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.    
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~----  163 (281)
T 3s55_A           89 FVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN-YGRIVTVSSMLGHS----  163 (281)
T ss_dssp             HHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGS----
T ss_pred             HHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhcC----
Confidence            765       799999999965421     122345678899999999998853    334 57999999987663    


Q ss_pred             CCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-----Ch-----
Q 040253          138 RKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-----PP-----  204 (338)
Q Consensus       138 ~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-----~~-----  204 (338)
                                        +..+...|+.+|.+.+.+.+.++.++   |+++++++||.++++......     ..     
T Consensus       164 ------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~  225 (281)
T 3s55_A          164 ------------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKP  225 (281)
T ss_dssp             ------------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------C
T ss_pred             ------------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhcccccccccc
Confidence                              11245689999999999999999874   899999999999998643210     00     


Q ss_pred             hHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          205 SLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      ..............     ...++.+++|+|+++++++.....   +..+++.+
T Consensus       226 ~~~~~~~~~~~~~~-----~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdg  274 (281)
T 3s55_A          226 TLKDVESVFASLHL-----QYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDA  274 (281)
T ss_dssp             CHHHHHHHHHHHCS-----SSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             chhHHHHHHHhhhc-----cCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECC
Confidence            00000000000000     014689999999999999975432   44677754

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.91  E-value=3.1e-23  Score=176.37  Aligned_cols=216  Identities=16%  Similarity=0.127  Sum_probs=149.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------   75 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|++ +....  .+...   ..++.++.+|++|++++.+++       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~--~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA--AIRNL---GRRVLTVKCDVSQPGDVEAFGKQVISTF   80 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH--HHHHT---TCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH--HHHhc---CCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            358999999999999999999999999999999987 43322  11111   146899999999998887765       


Q ss_pred             CCccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           76 RGCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      .++|+|||+||.....     ..+..+..+++|+.++.++.++    +++.+ ..++|++||...+.             
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-------------  146 (249)
T 2ew8_A           81 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWL-------------  146 (249)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGS-------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhcc-------------
Confidence            3799999999865421     1223446789999998888777    44445 57999999987764             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +.++...|+.+|...+.+.+.++.++   |+++++++||.+.++..............    ... .   .
T Consensus       147 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~----~~~-~---~  209 (249)
T 2ew8_A          147 ---------KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVL----PNM-L---Q  209 (249)
T ss_dssp             ---------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC----------------------CT-T---S
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhccccchhhHH----HHh-h---C
Confidence                     11245689999999999999998874   89999999999988753211100000000    000 0   0


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ...++.+.+|+|+++++++....  ..| .+++.+
T Consensus       210 ~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdG  244 (249)
T 2ew8_A          210 AIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDG  244 (249)
T ss_dssp             SSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESS
T ss_pred             ccCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECC
Confidence            11458899999999999997532  234 556644

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.91  E-value=2.2e-23  Score=180.87  Aligned_cols=218  Identities=17%  Similarity=0.156  Sum_probs=153.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS--FGYESSGYAGDVSKKEEISEVINKILTEHK  120 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh--cCCceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            358999999999999999999999999999988876554433222211  12468899999999998887763       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++++++.    +.+ .++||++||...+.  .           
T Consensus       121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~--~-----------  186 (285)
T 2c07_A          121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGLT--G-----------  186 (285)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH--C-----------
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhcc--C-----------
Confidence            689999999865421     122345678999999888777664    344 57999999987653  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               ..+...|+.+|.+.+.+++.++.+.   |+++++++||.+.++.... .........   .. ....    
T Consensus       187 ---------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~---~~-~~~~----  248 (285)
T 2c07_A          187 ---------NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK-ISEQIKKNI---IS-NIPA----  248 (285)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC------CCHHHHHHH---HT-TCTT----
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhh-cCHHHHHHH---Hh-hCCC----
Confidence                     1134589999999999999988775   8999999999998875332 111111111   01 1111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                       .++++++|+|++++.++....   .+..++++++
T Consensus       249 -~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG  282 (285)
T 2c07_A          249 -GRMGTPEEVANLACFLSSDKSGYINGRVFVIDGG  282 (285)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCC
Confidence             358999999999999987543   2445666543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.91  E-value=3.5e-23  Score=178.52  Aligned_cols=218  Identities=16%  Similarity=0.141  Sum_probs=152.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--------   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--------   75 (338)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|++++.+++        
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE--KGLNVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            458999999999999999999999999999999986554433221111  1246889999999998887766        


Q ss_pred             CCccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           76 RGCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      .++|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.  .          
T Consensus        98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~--~----------  164 (273)
T 1ae1_A           98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFS--A----------  164 (273)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTS--C----------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHhhcC--C----------
Confidence            4799999999864321     122344677899999999988773    334 57999999987764  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-----hhHHHhhhhcccCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-----PSLITALSPITRNEA  218 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-----~~~~~~~~~~~~~~~  218 (338)
                                .++...|+.+|.+.+.+.+.++.++   |+++++++||.++++.......     ........  ...  
T Consensus       165 ----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~--  230 (273)
T 1ae1_A          165 ----------LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFI--VKT--  230 (273)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHH--HHS--
T ss_pred             ----------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHH--hcC--
Confidence                      1234589999999999999998875   8999999999999886332111     00100000  011  


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      ..     .++.+.+|+|++++.++....   .+..+++.+
T Consensus       231 p~-----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG  265 (273)
T 1ae1_A          231 PM-----GRAGKPQEVSALIAFLCFPAASYITGQIIWADG  265 (273)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCccccCcCCCEEEECC
Confidence            11     358899999999999986432   234566644

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.91  E-value=1.7e-23  Score=179.75  Aligned_cols=218  Identities=14%  Similarity=0.085  Sum_probs=155.6

Q ss_pred             CcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+||||||+  |+||++++++|+++|++|++++|+....+..+.+....   ++..++.+|++|++++.++++      
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELGKVW   85 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4789999999  99999999999999999999999874333333332211   234788999999988877664      


Q ss_pred             -CccEEEEecccCCC----------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 -GCTGVFHLATPMDF----------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 -~~d~vi~~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                       ++|+|||+||....          ...+..+..+++|+.++.++++++...- ...++|++||...+.           
T Consensus        86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------  154 (265)
T 1qsg_A           86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-----------  154 (265)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred             CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc-----------
Confidence             68999999996432          2223345688999999999999987652 125899999976653           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +.++...|+.+|.+.+.+.+.++.++   |+++++++||.++++.......  ........... ..+ 
T Consensus       155 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~~-~p~-  219 (265)
T 1qsg_A          155 -----------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKD--FRKMLAHCEAV-TPI-  219 (265)
T ss_dssp             -----------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTT--HHHHHHHHHHH-STT-
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccc--cHHHHHHHHhc-CCC-
Confidence                       11234589999999999999998875   8999999999999875322111  01111100011 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                          ..+.+.+|+|+++++++.....   +..+++.+
T Consensus       220 ----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg  252 (265)
T 1qsg_A          220 ----RRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDG  252 (265)
T ss_dssp             ----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             ----CCCCCHHHHHHHHHHHhCchhcCccCCEEEECC
Confidence                3578999999999999875332   34567754

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.91  E-value=7e-24  Score=179.90  Aligned_cols=217  Identities=18%  Similarity=0.186  Sum_probs=153.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +|+|+||||+|+||++++++|+++|++|+++ .|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA--YGGQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            3789999999999999999999999999985 6765444333221110  11468899999999998888775       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++++++...    + ..+||++||...+.  .           
T Consensus        79 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~~~~--~-----------  144 (244)
T 1edo_A           79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLI--G-----------  144 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH--C-----------
T ss_pred             CCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCEEEEECChhhcC--C-----------
Confidence            699999999865421     11233467899999999998887543    4 57999999986653  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               ..+...|+.+|...+.+.+.+++++   |++++++|||.++++..... .......   .... ...    
T Consensus       145 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~~~---~~~~-~~~----  206 (244)
T 1edo_A          145 ---------NIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL-GEDMEKK---ILGT-IPL----  206 (244)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CHHHHHH---HHTS-CTT----
T ss_pred             ---------CCCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc-ChHHHHH---Hhhc-CCC----
Confidence                     1134589999999999999888774   89999999999988743221 1111111   1111 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC----CCCceEEecC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN----AKGRYICSSH  256 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~----~~~~~~~~~~  256 (338)
                       .++++.+|+|++++.++.++.    .+..|++++.
T Consensus       207 -~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG  241 (244)
T 1edo_A          207 -GRTGQPENVAGLVEFLALSPAASYITGQAFTIDGG  241 (244)
T ss_dssp             -CSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTT
T ss_pred             -CCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCC
Confidence             458899999999999984432    2445677543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.91  E-value=1.6e-23  Score=181.15  Aligned_cols=234  Identities=15%  Similarity=0.139  Sum_probs=158.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC---------cHHHHHHHhc-CCCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD---------NKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+..         ..+.+..... ......++.++.+|++|.+++.+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            3689999999999999999999999999999998732         1222221111 01112578999999999998888


Q ss_pred             hhC-------CccEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCC
Q 040253           74 PIR-------GCTGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        74 ~~~-------~~d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                      +++       ++|++||+||..... ..+..+..+++|+.++.++++++...    +...++|++||...+.  .. .  
T Consensus        92 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--~~-~--  166 (278)
T 3sx2_A           92 ALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLA--GV-G--  166 (278)
T ss_dssp             HHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS--CC-C--
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcC--CC-c--
Confidence            775       799999999975432 22345678999999999999886432    2146899999987653  11 0  


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                          .         +.++...|+.+|.+.+.+.+.++.++   |+++++++||.+.++......................
T Consensus       167 ----~---------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~  233 (278)
T 3sx2_A          167 ----S---------ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPG  233 (278)
T ss_dssp             ----C---------SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--C
T ss_pred             ----c---------CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhh
Confidence                0         11234589999999999999998875   6999999999999876432111111100111111111


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      .+......++++.+|+|+++++++....  . +..+++.+
T Consensus       234 ~~~~~~p~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG  273 (278)
T 3sx2_A          234 AMGNAMPVEVLAPEDVANAVAWLVSDQARYITGVTLPVDA  273 (278)
T ss_dssp             TTSCSSSCSSBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             hhhhhcCcCcCCHHHHHHHHHHHhCcccccccCCEEeECC
Confidence            1111111578999999999999986543  2 44566654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.91  E-value=1.4e-23  Score=179.76  Aligned_cols=219  Identities=13%  Similarity=0.099  Sum_probs=156.4

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|+||||||+  |+||++++++|+++|++|++++|+.+.....+.+....   +++.++.+|++|++++.++++     
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL---GGALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHT---TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            46899999999  99999999999999999999999875333333332211   247889999999998887765     


Q ss_pred             --CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|+|||+||....         ...+..+..+++|+.++.++++++...- ...++|++||...+.           
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------  152 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK-----------  152 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----------
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC-----------
Confidence              78999999986431         1223345688999999999999987652 125899999976653           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +..+...|+.+|...+.+.+.++.++   |+++++++||.++++.......  ........... ... 
T Consensus       153 -----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--~~~~~~~~~~~-~p~-  217 (261)
T 2wyu_A          153 -----------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPG--FTKMYDRVAQT-APL-  217 (261)
T ss_dssp             -----------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTT--HHHHHHHHHHH-STT-
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccc--cHHHHHHHHhc-CCC-
Confidence                       11234589999999999999998876   8999999999999875322111  00101100011 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                          .++.+++|+|+++++++....   .+..+++.+
T Consensus       218 ----~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdg  250 (261)
T 2wyu_A          218 ----RRNITQEEVGNLGLFLLSPLASGITGEVVYVDA  250 (261)
T ss_dssp             ----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCCCHHHHHHHHHHHcChhhcCCCCCEEEECC
Confidence                357899999999999986432   244667754

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.91  E-value=1.5e-23  Score=180.55  Aligned_cols=217  Identities=17%  Similarity=0.112  Sum_probs=155.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~   77 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.......+.+...   ..++.++.+|++|.+++.++.+      +
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADG---GGSAEAVVADLADLEGAANVAEELAATRR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTT---TCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhc---CCcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence            368999999999999999999999999999999764333333333221   2578999999999988776643      7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.               
T Consensus       107 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~---------------  170 (273)
T 3uf0_A          107 VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIASMLSFQ---------------  170 (273)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS---------------
T ss_pred             CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchHhcC---------------
Confidence            99999999965421     122345688999999999988763    344 57999999987663               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                             +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++...... ........  ....  ..    
T Consensus       171 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~--~~~~--p~----  235 (273)
T 3uf0_A          171 -------GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEI--TARI--PA----  235 (273)
T ss_dssp             -------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHH--HHHS--TT----
T ss_pred             -------CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHH--HhcC--CC----
Confidence                   1124568999999999999999988   5899999999999886532100 00000000  0011  11    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                       .++.+.+|+|+++++++....   .+..+++.+
T Consensus       236 -~r~~~pedva~~v~~L~s~~a~~itG~~i~vdG  268 (273)
T 3uf0_A          236 -GRWATPEDMVGPAVFLASDAASYVHGQVLAVDG  268 (273)
T ss_dssp             -SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCCCHHHHHHHHHHHhCchhcCCcCCEEEECc
Confidence             468899999999999987533   244567754

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.91  E-value=4e-23  Score=176.35  Aligned_cols=219  Identities=14%  Similarity=0.126  Sum_probs=154.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||.+++++|+++|++|++++|+.+ ....+.+...   ..++.++.+|++|.+++.++++       
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP-APALAEIARH---GVKAVHHPADLSDVAQIEALFALAEREFG   78 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHTT---SCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHhc---CCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999876 2222333221   2468899999999998888776       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++.+++    ++.+ ..++|++||...+.  .           
T Consensus        79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~-----------  144 (255)
T 2q2v_A           79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIASVHGLV--G-----------  144 (255)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS--C-----------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcCchhcc--C-----------
Confidence            799999999864321     12234567899999777766554    5555 68999999987663  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHh---h----hhcccCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITA---L----SPITRNE  217 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~---~----~~~~~~~  217 (338)
                               ..+...|+.+|...+.+.+.++.++   |+++++++||.++++.... ........   .    .......
T Consensus       145 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  214 (255)
T 2q2v_A          145 ---------STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQK-QIDDRAANGGDPLQAQHDLLAEK  214 (255)
T ss_dssp             ---------CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHH-HHHHHHHHTCCHHHHHHHHHTTT
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhh-hcccccccccchHHHHHHHHhcc
Confidence                     1134589999999999999999885   7999999999998874211 00000000   0    0000111


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      ..     ..++++++|+|+++++++....  . +..+++.+
T Consensus       215 ~p-----~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg  250 (255)
T 2q2v_A          215 QP-----SLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDG  250 (255)
T ss_dssp             CT-----TCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             CC-----CCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECC
Confidence            11     1468999999999999987543  2 44567654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.91  E-value=1.3e-23  Score=180.24  Aligned_cols=215  Identities=15%  Similarity=0.119  Sum_probs=151.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+.........     ..++.++.+|++|.+++.++++       
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVFSANLSDRKSIKQLAEVAEREME  100 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999866554443222     1578999999999998887764       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++.+++    ++.+ ..++|++||...+.              
T Consensus       101 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~~~~~--------------  165 (266)
T 3grp_A          101 GIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSIVGVV--------------  165 (266)
T ss_dssp             SCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC------------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCHHHcC--------------
Confidence            799999999965421     11234567889999977776655    3344 57999999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++..... ........    ......    
T Consensus       166 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-~~~~~~~~----~~~~p~----  228 (266)
T 3grp_A          166 --------GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL-NEKQKEAI----MAMIPM----  228 (266)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC-CHHHHHHH----HTTCTT----
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc-CHHHHHHH----HhcCCC----
Confidence                    11234589999999999999998875   89999999999987642211 11111111    111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC---CCceEEecC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA---KGRYICSSH  256 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~~  256 (338)
                       .++.+.+|+|+++++++.....   +..+++.+.
T Consensus       229 -~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG  262 (266)
T 3grp_A          229 -KRMGIGEEIAFATVYLASDEAAYLTGQTLHINGG  262 (266)
T ss_dssp             -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence             4688999999999999875432   445666543

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.91  E-value=1.6e-23  Score=176.63  Aligned_cols=196  Identities=20%  Similarity=0.187  Sum_probs=139.6

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |+.++|+|+||||+|+||++++++|+++|++|++++|+.+....+....      .++.++.+|++|.+++.++++    
T Consensus         1 M~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~   74 (234)
T 2ehd_A            1 MEGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVREEGDWARAVAAMEE   74 (234)
T ss_dssp             ---CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------hhceEEEecCCCHHHHHHHHHHHHH
Confidence            7777789999999999999999999999999999999765544332211      267899999999988877664    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|+|||+||.....     ..+..+..+++|+.++.++++.    +++.+ .++||++||...+.           
T Consensus        75 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~-----------  142 (234)
T 2ehd_A           75 AFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG-GGTIVNVGSLAGKN-----------  142 (234)
T ss_dssp             HHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCTTTTS-----------
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEECCchhcC-----------
Confidence               789999999864321     1123356788999998765554    45555 68999999987663           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +..+...|+.+|...+.+++.++.+   +|++++++|||.+..+....     .        ..  .  
T Consensus       143 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~--------~~--~--  194 (234)
T 2ehd_A          143 -----------PFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN-----T--------PG--Q--  194 (234)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC------------------------------
T ss_pred             -----------CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc-----c--------cc--c--
Confidence                       1124568999999999998888776   48999999999887653210     0        00  0  


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                          ..+++.+|+|++++.++..+.
T Consensus       195 ----~~~~~~~dvA~~~~~l~~~~~  215 (234)
T 2ehd_A          195 ----AWKLKPEDVAQAVLFALEMPG  215 (234)
T ss_dssp             -------CCHHHHHHHHHHHHHSCC
T ss_pred             ----cCCCCHHHHHHHHHHHhCCCc
Confidence                125799999999999998654

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.91  E-value=9.3e-24  Score=181.20  Aligned_cols=205  Identities=20%  Similarity=0.234  Sum_probs=151.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++|+||||||+|+||.+++++|+++|++|++++|+.+....   +.     ..++.++.+|++|.+++.++++       
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   86 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKA---LN-----LPNTLCAQVDVTDKYTFDTAITRAEKIYG   86 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHT---TC-----CTTEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH---hh-----cCCceEEEecCCCHHHHHHHHHHHHHHCC
Confidence            35789999999999999999999999999999997543322   11     1478899999999988887765       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.              
T Consensus        87 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS~~~~~--------------  151 (266)
T 3p19_A           87 PADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISSIAGKK--------------  151 (266)
T ss_dssp             SEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhCC--------------
Confidence            799999999965421     112334678999999999777653    444 57999999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++................   .....    
T Consensus       152 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~---~~~~~----  216 (266)
T 3p19_A          152 --------TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDA---WRVDM----  216 (266)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHH---HHHHT----
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccchhhhHHHHh---hcccc----
Confidence                    11244589999999999999998874   8999999999998875432221111111110   00011    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA  247 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~  247 (338)
                       .++++.+|+|+++++++..+..
T Consensus       217 -~r~~~pedvA~av~~l~~~~~~  238 (266)
T 3p19_A          217 -GGVLAADDVARAVLFAYQQPQN  238 (266)
T ss_dssp             -TCCBCHHHHHHHHHHHHHSCTT
T ss_pred             -cCCCCHHHHHHHHHHHHcCCCC
Confidence             4589999999999999998654

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.91  E-value=1.6e-23  Score=178.91  Aligned_cols=218  Identities=14%  Similarity=0.099  Sum_probs=152.5

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |+. .+|+||||||+|+||++++++|+++|++|++++|+.+. .......      .. .++.+|++|.+++.++++   
T Consensus         1 M~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~------~~-~~~~~D~~~~~~~~~~~~~~~   72 (256)
T 2d1y_A            1 MGLFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI------GG-AFFQVDLEDERERVRFVEEAA   72 (256)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH------TC-EEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh------hC-CEEEeeCCCHHHHHHHHHHHH
Confidence            443 46899999999999999999999999999999998766 3332211      13 788999999988877664   


Q ss_pred             ----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                          ++|+|||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.          
T Consensus        73 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~----------  141 (256)
T 2d1y_A           73 YALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLF----------  141 (256)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTS----------
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccccccC----------
Confidence                689999999865421     1122356889999999999887643    34 67999999986653          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhH-H-HhhhhcccCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSL-I-TALSPITRNEA  218 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~-~-~~~~~~~~~~~  218 (338)
                                  +.++...|+.+|...+.+.+.++.++   |+++++++||.+.++.......... . ...... ....
T Consensus       142 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~-~~~~  208 (256)
T 2d1y_A          142 ------------AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDW-EDLH  208 (256)
T ss_dssp             ------------BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHH-HTTS
T ss_pred             ------------CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHH-HhcC
Confidence                        11234589999999999999998775   8999999999997653110000000 0 000000 0001


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      .     ..++++++|+|++++.++....   .+..+++.+
T Consensus       209 ~-----~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~g  243 (256)
T 2d1y_A          209 A-----LRRLGKPEEVAEAVLFLASEKASFITGAILPVDG  243 (256)
T ss_dssp             T-----TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             C-----CCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECC
Confidence            1     1468999999999999987642   244677754

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.91  E-value=8.1e-23  Score=176.58  Aligned_cols=218  Identities=17%  Similarity=0.151  Sum_probs=154.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCC----CCchhhhC---
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEE----GNFDEPIR---   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~----~~~~~~~~---   76 (338)
                      +|++|||||+|+||.+++++|+++|++|++++| +.+............ ...++.++.+|++|.    +++.++++   
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAA-RAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH-STTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHh-cCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            478999999999999999999999999999999 655443332211100 014689999999999    77776664   


Q ss_pred             ----CccEEEEecccCCCC-----CC-----------CccchhhhhhhHHHHHHHHHHHhCC--Cc------cEEEEecC
Q 040253           77 ----GCTGVFHLATPMDFE-----SK-----------DPENEVIRPTINGMVSIMRACKNAK--TV------RRLVFTSS  128 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~-----~~-----------~~~~~~~~~n~~~~~~l~~~~~~~~--~~------~~~v~~Ss  128 (338)
                          ++|++||+||.....     ..           +..+..+++|+.++.++++++...-  ..      .++|++||
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~isS  169 (276)
T 1mxh_A           90 RAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD  169 (276)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECC
T ss_pred             HhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEECc
Confidence                799999999864321     11           2334678999999999999887642  13      79999999


Q ss_pred             ceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh
Q 040253          129 AGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS  205 (338)
Q Consensus       129 ~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~  205 (338)
                      ...+.                      +..+...|+.+|...+.+.+.++.++   |+++++++||.+.++ .  .....
T Consensus       170 ~~~~~----------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~--~~~~~  224 (276)
T 1mxh_A          170 AMTDL----------------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-P--AMPQE  224 (276)
T ss_dssp             GGGGS----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-S--SSCHH
T ss_pred             hhhcC----------------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-c--cCCHH
Confidence            87763                      11244589999999999999998875   899999999999998 2  22221


Q ss_pred             HHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEecC
Q 040253          206 LITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSSH  256 (338)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~~  256 (338)
                      .....   ... ...    .+++.+.+|+|+++++++.....   +..+++.+.
T Consensus       225 ~~~~~---~~~-~p~----~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG  270 (276)
T 1mxh_A          225 TQEEY---RRK-VPL----GQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGG  270 (276)
T ss_dssp             HHHHH---HTT-CTT----TSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHH---Hhc-CCC----CCCCCCHHHHHHHHHHHhCccccCccCcEEEECCc
Confidence            11111   111 111    12288999999999999875332   335666543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.91  E-value=2.7e-23  Score=177.25  Aligned_cols=219  Identities=17%  Similarity=0.131  Sum_probs=159.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||.+++++|+++|++|++++|+.+....+.....     .++.++.+|++|.+++.++++       +
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTLGA   82 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999999999999998766555443321     578999999999988876653       7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      +|++||+||.....     ..+..+..+++|+.++.++.+++...- ...++|++||...+.                  
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------------------  144 (255)
T 4eso_A           83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG------------------  144 (255)
T ss_dssp             EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS------------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC------------------
Confidence            99999999865421     223345679999999999999987642 135899999987664                  


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC-CChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS-MPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                          +.++...|+.+|.+.+.+.+.++.++   |+++++++||.+..+..... .................+.     .+
T Consensus       145 ----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~-----~r  215 (255)
T 4eso_A          145 ----GHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPM-----KR  215 (255)
T ss_dssp             ----BCTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTT-----SS
T ss_pred             ----CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCC-----CC
Confidence                11245689999999999999999886   89999999999998754321 1111111110000111111     45


Q ss_pred             cccHHHHHHHHHHhhcCC-CC-CCceEEec
Q 040253          228 FVHLDDLCSAHIFLFEHP-NA-KGRYICSS  255 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~-~~-~~~~~~~~  255 (338)
                      +.+.+|+|+++++++... .. +..+++.+
T Consensus       216 ~~~pedvA~~v~~L~s~~~~itG~~i~vdG  245 (255)
T 4eso_A          216 NGTADEVARAVLFLAFEATFTTGAKLAVDG  245 (255)
T ss_dssp             CBCHHHHHHHHHHHHHTCTTCCSCEEEEST
T ss_pred             CcCHHHHHHHHHHHcCcCcCccCCEEEECC
Confidence            889999999999988641 12 44567743

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.91  E-value=4.2e-23  Score=177.42  Aligned_cols=220  Identities=17%  Similarity=0.101  Sum_probs=154.5

Q ss_pred             CCcEEEEeCCchh-hHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGF-IGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|+ ||++++++|+++|++|++++|+.+............ ...++.++.+|++|.+++.++++      
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL-GLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-CSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc-CCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            3689999999985 999999999999999999999876655543332211 12579999999999998877764      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+||.....     ..+..+..+++|+.++.++++++...    +...++|++||...+.             
T Consensus       100 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-------------  166 (266)
T 3o38_A          100 GRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR-------------  166 (266)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC-------------
T ss_pred             CCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC-------------
Confidence             689999999964421     12234567899999999998887543    1257899999976653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +..+...|+.+|.+.+.+++.++.+   +|+++++++||.+..+...........   ... ....     
T Consensus       167 ---------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~---~~~-~~~~-----  228 (266)
T 3o38_A          167 ---------AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTSSSELL---DRL-ASDE-----  228 (266)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC---------------------CC-----
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccCcHHHH---HHH-HhcC-----
Confidence                     1124568999999999999999887   489999999999987653221111000   000 0011     


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      ...++.+.+|+|+++++++....  . +..+++++
T Consensus       229 ~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdg  263 (266)
T 3o38_A          229 AFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSS  263 (266)
T ss_dssp             TTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             CcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcC
Confidence            11468899999999999987533  2 33566644

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.91  E-value=4.7e-24  Score=184.30  Aligned_cols=222  Identities=17%  Similarity=0.149  Sum_probs=156.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE--AGVEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            458999999999999999999999999999999987554433221110  11468899999999988877765       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC------CCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA------KTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++++++...      + ..+||++||...+.            
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~-~g~iv~isS~~~~~------------  165 (277)
T 2rhc_B           99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQ------------  165 (277)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHT-EEEEEEECCGGGTS------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcC-CeEEEEECcccccc------------
Confidence            699999999864321     11223568899999999999987654      4 57999999986553            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh--hH-----HHhhhhccc
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP--SL-----ITALSPITR  215 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~--~~-----~~~~~~~~~  215 (338)
                                +..+...|+.+|...+.+.+.++.+.   |+++++++||.+.++........  ..     .........
T Consensus       166 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (277)
T 2rhc_B          166 ----------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITA  235 (277)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             ----------CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHh
Confidence                      11234589999999999999988774   79999999999987642110000  00     000000000


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                      . ...     .++++.+|+|++++.++..+.   .+..+++.+.
T Consensus       236 ~-~p~-----~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG  273 (277)
T 2rhc_B          236 R-VPI-----GRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG  273 (277)
T ss_dssp             H-STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             c-CCC-----CCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCC
Confidence            0 111     468999999999999987542   2446677553

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.90  E-value=2.2e-23  Score=178.59  Aligned_cols=220  Identities=15%  Similarity=0.083  Sum_probs=153.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++| +.+..........  ....++.++.+|++|.+++.++++      
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIK--KVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--HTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3589999999999999999999999999999999 5443333222111  012468899999999988877765      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+||.....     ..+..+..+++|+.++.++++++...    +...+||++||...+.             
T Consensus        84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~-------------  150 (261)
T 1gee_A           84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-------------  150 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcC-------------
Confidence             799999999865421     11233467899999999888776542    2136999999976552             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +..+...|+.+|.+.+.+++.++.++   |++++++|||.++++....... . ......... ....   
T Consensus       151 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-~-~~~~~~~~~-~~~~---  215 (261)
T 1gee_A          151 ---------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFA-D-PEQRADVES-MIPM---  215 (261)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHH-S-HHHHHHHHT-TCTT---
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhccc-C-hhHHHHHHh-cCCC---
Confidence                     11245689999999999999888775   8999999999999875321000 0 000010101 1111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                        .++++.+|+|++++.++....  . +..+++.+
T Consensus       216 --~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~g  248 (261)
T 1gee_A          216 --GYIGEPEEIAAVAAWLASSEASYVTGITLFADG  248 (261)
T ss_dssp             --SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             --CCCcCHHHHHHHHHHHhCccccCCCCcEEEEcC
Confidence              458899999999999987432  2 33566654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.90  E-value=2.6e-23  Score=176.95  Aligned_cols=204  Identities=16%  Similarity=0.190  Sum_probs=147.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+|+||||+|+||++++++|+++|  ++|++++|+.+..+.+..+     ...++.++.+|++|.+++.++++      
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----KDSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-----CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc-----cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999  9999999987665544332     12578999999999988887775      


Q ss_pred             ---CccEEEEecccCC-CC-----CCCccchhhhhhhHHHHHHHHHHHhC----------CC----ccEEEEecCceeee
Q 040253           77 ---GCTGVFHLATPMD-FE-----SKDPENEVIRPTINGMVSIMRACKNA----------KT----VRRLVFTSSAGTLD  133 (338)
Q Consensus        77 ---~~d~vi~~a~~~~-~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~----~~~~v~~Ss~~v~~  133 (338)
                         ++|+|||+||... ..     ..+..+..+++|+.++.++++++...          +.    ..+||++||...+.
T Consensus        78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  157 (250)
T 1yo6_A           78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI  157 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred             CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence               7999999998654 11     11223467889999999988876532          10    46899999987664


Q ss_pred             ccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhh
Q 040253          134 VEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITAL  210 (338)
Q Consensus       134 ~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  210 (338)
                      ...      .+..         +..+...|+.+|.+.+.+++.++.++   |+++++++||.+.++....          
T Consensus       158 ~~~------~~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------  212 (250)
T 1yo6_A          158 TDN------TSGS---------AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK----------  212 (250)
T ss_dssp             TTC------CSTT---------SSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-----------------
T ss_pred             CCc------cccc---------ccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC----------
Confidence            111      0011         12356689999999999999999886   8999999999987654210          


Q ss_pred             hhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCceEE
Q 040253          211 SPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGRYIC  253 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~~~~  253 (338)
                                     ..+++.+|+|+.++.++....  ..|.|+.
T Consensus       213 ---------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~  242 (250)
T 1yo6_A          213 ---------------NAALTVEQSTAELISSFNKLDNSHNGRFFM  242 (250)
T ss_dssp             ---------------------HHHHHHHHHHHTTCCGGGTTCEEE
T ss_pred             ---------------CCCCCHHHHHHHHHHHHhcccccCCCeEEE
Confidence                           136789999999999998754  2555543

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.90  E-value=2.3e-23  Score=178.07  Aligned_cols=218  Identities=16%  Similarity=0.124  Sum_probs=156.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|+++ .|+.............  ...++.++.+|++|.+++.++++      
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK--LGVKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            36899999999999999999999999999987 6765544443332221  12578999999999998877764      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.             
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~-------------  146 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG-GGHIVSISSLGSIR-------------  146 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEEEEGGGTS-------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhCC-------------
Confidence             679999999854321     122334678999999999988773    344 57999999987653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh-hHHHhhhhcccCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP-SLITALSPITRNEAHYPI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~  222 (338)
                               +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+........ .......  ...  ..  
T Consensus       147 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~--~~~--p~--  211 (258)
T 3oid_A          147 ---------YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDAR--QNT--PA--  211 (258)
T ss_dssp             ---------BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHH--HHC--TT--
T ss_pred             ---------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHH--hcC--CC--
Confidence                     11245689999999999999999886   79999999999987653321111 0111000  111  11  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                         .++.+.+|+|+++++++.....   +..+++.+
T Consensus       212 ---~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdG  244 (258)
T 3oid_A          212 ---GRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDG  244 (258)
T ss_dssp             ---SSCBCHHHHHHHHHHHTSSTTTTCCSCEEEEST
T ss_pred             ---CCCcCHHHHHHHHHHHhCcccCCccCCEEEECC
Confidence               4688999999999999976432   44667744

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.90  E-value=2.6e-23  Score=177.43  Aligned_cols=214  Identities=18%  Similarity=0.113  Sum_probs=152.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+.........     ..++.++.+|++|.+++.++++       
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999865544332211     1468899999999998887765       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHH----HHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIM----RACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~----~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++..+.    ..+++.+ ..++|++||...+.  .           
T Consensus        79 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~-----------  144 (254)
T 1hdc_A           79 SVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLM--G-----------  144 (254)
T ss_dssp             CCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C-----------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhcc--C-----------
Confidence            799999999864421     12234567899999987554    4455555 67999999987663  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               ..+...|+.+|...+.+.+.++.++   |+++++++||.++++....     .   .... .. .......
T Consensus       145 ---------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-----~---~~~~-~~-~~~~~~p  205 (254)
T 1hdc_A          145 ---------LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMTAE-----T---GIRQ-GE-GNYPNTP  205 (254)
T ss_dssp             ---------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-----H---TCCC-ST-TSCTTST
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccccc-----c---chhH-HH-HHHhcCC
Confidence                     1245589999999999999988874   8999999999998764210     0   0000 00 0000001


Q ss_pred             CCccc-cHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          225 QGQFV-HLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       225 ~~~~i-~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      ..++. +.+|+|++++.++....  . +..+++.+
T Consensus       206 ~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdg  240 (254)
T 1hdc_A          206 MGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDG  240 (254)
T ss_dssp             TSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             CCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECC
Confidence            13477 99999999999987542  2 33556644

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.90  E-value=2.1e-23  Score=183.86  Aligned_cols=240  Identities=17%  Similarity=0.123  Sum_probs=155.9

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC--cHHHHHHHhcC-CCCCCcEEEEecccCCCCCchhhhC-
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLEL-PKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      |++.+|+||||||+|+||.+++++|+++|++|++.+|+..  +...++.+... .....++.++.+|++|.+++.++++ 
T Consensus         1 M~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~   80 (324)
T 3u9l_A            1 MVMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ   80 (324)
T ss_dssp             ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence            6666789999999999999999999999999999999642  22222222211 0112578999999999998888775 


Q ss_pred             ------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCC
Q 040253           77 ------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 ------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                            ++|+|||+||.....     ..+.....+++|+.++.++++++    ++.+ ..++|++||...+.  .     
T Consensus        81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~-~g~iV~isS~~~~~--~-----  152 (324)
T 3u9l_A           81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK-HGLLIWISSSSSAG--G-----  152 (324)
T ss_dssp             HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C-----
T ss_pred             HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEecchhcc--C-----
Confidence                  799999999954311     22233567899999999999988    4445 67999999987663  1     


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCC---CCChhHHHhhhhccc
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTS---SMPPSLITALSPITR  215 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~  215 (338)
                                    .......|+.||.+.|.+.+.++.+   +|+++++++||.+.++....   ........... ...
T Consensus       153 --------------~~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~-~~~  217 (324)
T 3u9l_A          153 --------------TPPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAE-YEA  217 (324)
T ss_dssp             --------------CCSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---------CBCCSCHHHHHH-HHH
T ss_pred             --------------CCCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCchhhcccCCchHHHHHHh-hcc
Confidence                          0112457999999999999999888   48999999999998653211   11111100000 000


Q ss_pred             CCCCCCCCC---------CCccccHHHHHHHHHHhhcCCCC--CCceEEecCCCCHHHHH
Q 040253          216 NEAHYPIIK---------QGQFVHLDDLCSAHIFLFEHPNA--KGRYICSSHPATILELA  264 (338)
Q Consensus       216 ~~~~~~~~~---------~~~~i~v~D~a~~~~~~l~~~~~--~~~~~~~~~~~t~~e~~  264 (338)
                      .+ ......         ..+..+.+|+|++++.+++.+..  ...+.+++.......+.
T Consensus       218 ~~-~~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~~~~~~~~~~gp~~~~~~~~~  276 (324)
T 3u9l_A          218 GP-NAGLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTASGKRPFRVHVDPAEDGADVGF  276 (324)
T ss_dssp             TT-TTTHHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSCTTCCCSEEEECTTCCSHHHHH
T ss_pred             cc-ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCCCCeEEEeCCcchHHHHHH
Confidence            00 000000         01236889999999999988742  22445666555644333

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.90  E-value=4.7e-23  Score=178.83  Aligned_cols=219  Identities=13%  Similarity=0.070  Sum_probs=154.9

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|+||||||+  |+||.+++++|+++|++|++++|+.+.....+.+....   +++.++.+|++|.+++.++++     
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGF---GSDLVVKCDVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35789999999  99999999999999999999999875333333332211   246789999999988877764     


Q ss_pred             --CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcC
Q 040253           77 --GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 --~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                        ++|+|||+||....         ...+..+..+++|+.++.++++++...-  ...++|++||...+.          
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------  166 (285)
T 2p91_A           97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK----------  166 (285)
T ss_dssp             TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS----------
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc----------
Confidence              78999999986432         1122345688999999999999987652  136999999976653          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++.......  ........... ...
T Consensus       167 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~--~~~~~~~~~~~-~p~  231 (285)
T 2p91_A          167 ------------VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITG--FHLLMEHTTKV-NPF  231 (285)
T ss_dssp             ------------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTT--HHHHHHHHHHH-STT
T ss_pred             ------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccc--hHHHHHHHHhc-CCC
Confidence                        11234589999999999999988775   8999999999999886432111  01111100011 111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                           ..+.+++|+|++++.++.....   +..+++.+
T Consensus       232 -----~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdg  264 (285)
T 2p91_A          232 -----GKPITIEDVGDTAVFLCSDWARAITGEVVHVDN  264 (285)
T ss_dssp             -----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             -----CCCcCHHHHHHHHHHHcCCcccCCCCCEEEECC
Confidence                 3478999999999999864332   34566644

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.90  E-value=3.2e-23  Score=179.38  Aligned_cols=220  Identities=17%  Similarity=0.130  Sum_probs=155.5

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ..+|+||||||+|+||++++++|+++|++|++++|+.+............  ..++.++.+|++|.+++.++++      
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY--GVHSKAYKCNISDPKSVEETISQQEKDF  109 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH--CSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            44689999999999999999999999999999999877655543322111  1468999999999988887765      


Q ss_pred             -CccEEEEecccCCC-CC---C---CccchhhhhhhHH----HHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 -GCTGVFHLATPMDF-ES---K---DPENEVIRPTING----MVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-~~---~---~~~~~~~~~n~~~----~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                       ++|+|||+||.... ..   .   +..+..+++|+.+    +..+++.+++.+ .++||++||...+.  ..       
T Consensus       110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~--~~-------  179 (279)
T 3ctm_A          110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSISGKI--VN-------  179 (279)
T ss_dssp             SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCCTTSC--C--------
T ss_pred             CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECchHhcc--CC-------
Confidence             49999999986532 11   1   1224578899999    456666676666 68999999986553  10       


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +..+...|+.+|.+.|.+++.++.++   + ++++++||.+.++.... ..........  ...  .. 
T Consensus       180 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~-~~~~~~~~~~--~~~--p~-  241 (279)
T 3ctm_A          180 -----------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDF-ASKDMKAKWW--QLT--PL-  241 (279)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSS-CCHHHHHHHH--HHS--TT-
T ss_pred             -----------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccc-cChHHHHHHH--HhC--Cc-
Confidence                       01245689999999999999999885   6 99999999998775421 1111111110  011  11 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                          .++++.+|+|++++.++....  . +..++++++
T Consensus       242 ----~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG  275 (279)
T 3ctm_A          242 ----GREGLTQELVGGYLYLASNASTFTTGSDVVIDGG  275 (279)
T ss_dssp             ----CSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ----cCCcCHHHHHHHHHHHhCccccCccCCEEEECCC
Confidence                358999999999999997532  2 345666543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.90  E-value=8e-23  Score=176.37  Aligned_cols=218  Identities=16%  Similarity=0.083  Sum_probs=153.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+...........  . .++.++.+|++|.+++.++++       
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSA--Y-GDCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTT--S-SCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--c-CceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            458999999999999999999999999999999986554443322211  1 268899999999988877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCC---ccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKT---VRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~---~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                      ++|+|||+||....     ...+..+..+++|+.++.++++++.    +.+.   ..++|++||...+.  ..       
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~--~~-------  175 (276)
T 2b4q_A          105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS--AM-------  175 (276)
T ss_dssp             CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTC--CC-------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcC--CC-------
Confidence            79999999986432     1222345688999999988877664    3331   27999999987663  10       


Q ss_pred             CCCCchhhhhhccCCCc-hHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhccc-CCCC
Q 040253          145 TSWSDLDFVRSVKMTGW-MYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITR-NEAH  219 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~-~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~  219 (338)
                                   .... .|+.+|.+.+.+.+.++.++   |+++++++||.+..+....    ........... ....
T Consensus       176 -------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----~~~~~~~~~~~~~~~p  238 (276)
T 2b4q_A          176 -------------GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH----IANDPQALEADSASIP  238 (276)
T ss_dssp             -------------CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH----HHHCHHHHHHHHHTST
T ss_pred             -------------CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh----cchhHHHHHHhhcCCC
Confidence                         1223 79999999999999998774   8999999999998764211    00000000001 0111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      .     .++.+.+|+|+++++++....  . +..+++.+
T Consensus       239 ~-----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG  272 (276)
T 2b4q_A          239 M-----GRWGRPEEMAALAISLAGTAGAYMTGNVIPIDG  272 (276)
T ss_dssp             T-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             C-----CCcCCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence            1     458899999999999987542  2 33556644

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.90  E-value=1.8e-22  Score=174.74  Aligned_cols=228  Identities=18%  Similarity=0.128  Sum_probs=158.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .++++|||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG--AGGQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT--TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999999987665554433322  22578999999999988877764       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|++||+||....      ...+..+..+++|+.++.++++++    ++.+ ..++|++||...+.  ..         
T Consensus       105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~--~~---------  172 (283)
T 3v8b_A          105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSSINGTR--TF---------  172 (283)
T ss_dssp             CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTT--BC---------
T ss_pred             CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcChhhcc--CC---------
Confidence            79999999996431      111233567899999999998887    4444 57999999976542  00         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+........................+. 
T Consensus       173 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~-  242 (283)
T 3v8b_A          173 ---------TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEEETAIPVEWPKGQVPI-  242 (283)
T ss_dssp             ---------CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHHHHSCCCBCTTCSCGG-
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccchhhhhhhhhhhhcCcc-
Confidence                     11245689999999999999999885   79999999999987754332111110000000000000000 


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                      ...++...+|+|+++++++.....  .| .+++.+
T Consensus       243 ~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG  277 (283)
T 3v8b_A          243 TDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDG  277 (283)
T ss_dssp             GTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             ccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECc
Confidence            003578899999999999875432  34 456644

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.90  E-value=1.5e-22  Score=173.10  Aligned_cols=212  Identities=18%  Similarity=0.146  Sum_probs=150.4

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ...+|+||||||+|+||++++++|+++|++|++++|+.+.....  +..     .++.++.+|++|.+++.++++     
T Consensus        24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~--~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (260)
T 3gem_A           24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTE--LRQ-----AGAVALYGDFSCETGIMAFIDLLKTQ   96 (260)
T ss_dssp             ---CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHH--HHH-----HTCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHH--HHh-----cCCeEEECCCCCHHHHHHHHHHHHHh
Confidence            33468999999999999999999999999999999987653221  111     247899999999988877664     


Q ss_pred             --CccEEEEecccCCCCCC----CccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 --GCTGVFHLATPMDFESK----DPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                        ++|++||+||.......    +..+..+++|+.++.++.+++..    .+ ..++|++||...+.             
T Consensus        97 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~-------------  162 (260)
T 3gem_A           97 TSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE-VADIVHISDDVTRK-------------  162 (260)
T ss_dssp             CSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGT-------------
T ss_pred             cCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhcC-------------
Confidence              69999999996542211    12235789999999999887743    34 57999999987663             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               +..+...|+.+|.+.+.+.+.++.++  ++++++++||.+..+.....  ..    .... ......    
T Consensus       163 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~--~~----~~~~-~~~~p~----  222 (260)
T 3gem_A          163 ---------GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA--AY----RANA-LAKSAL----  222 (260)
T ss_dssp             ---------CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC----------------------CCS----
T ss_pred             ---------CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH--HH----HHHH-HhcCCC----
Confidence                     11245689999999999999999886  59999999999987642210  00    0000 000111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                       ..+...+|+|++++++++.....| .+++.+
T Consensus       223 -~r~~~~edva~~v~~L~~~~~itG~~i~vdG  253 (260)
T 3gem_A          223 -GIEPGAEVIYQSLRYLLDSTYVTGTTLTVNG  253 (260)
T ss_dssp             -CCCCCTHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred             -CCCCCHHHHHHHHHHHhhCCCCCCCEEEECC
Confidence             347789999999999997555444 567744

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.90  E-value=3.4e-23  Score=178.96  Aligned_cols=219  Identities=16%  Similarity=0.108  Sum_probs=159.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG--GGGEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT--TTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            358999999999999999999999999999999987665554433221  22578999999999988887764       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|++||+||....      ...+..+..+++|+.++.++.+++..    .+ ..++|++||...+.  .          
T Consensus        85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--~----------  151 (280)
T 3tox_A           85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG-GGSLTFTSSFVGHT--A----------  151 (280)
T ss_dssp             CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCSBTTT--B----------
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcChhhCc--C----------
Confidence            79999999996431      12233457889999999999887643    33 46999999976652  0          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC---ChhHHHhhhhcccCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM---PPSLITALSPITRNEAHY  220 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~  220 (338)
                               +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++......   ........    ......
T Consensus       152 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~----~~~~p~  218 (280)
T 3tox_A          152 ---------GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFV----EGLHAL  218 (280)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHH----HTTSTT
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHH----hccCcc
Confidence                     11245689999999999999998885   899999999999987532211   11111111    111111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                           .++.+.+|+|+++++++.....   +..+++.+
T Consensus       219 -----~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdG  251 (280)
T 3tox_A          219 -----KRIARPEEIAEAALYLASDGASFVTGAALLADG  251 (280)
T ss_dssp             -----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -----CCCcCHHHHHHHHHHHhCccccCCcCcEEEECC
Confidence                 4688999999999999976432   44667744

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.90  E-value=4.8e-23  Score=176.41  Aligned_cols=228  Identities=15%  Similarity=0.077  Sum_probs=152.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+. ........... ...++.++.+|++|.+++.++++      
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH-HTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhc-cCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999998765 33332211100 01468899999999998877764      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.  .          
T Consensus        82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~----------  148 (260)
T 1x1t_A           82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV--A----------  148 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C----------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcHHhCc--C----------
Confidence             799999999864421     122345688999999999888774    334 57999999987663  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC-CC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY-PI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~  222 (338)
                                ..+...|+.+|...+.+.+.++.++   |+++++++||.+.++.......................+ ..
T Consensus       149 ----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (260)
T 1x1t_A          149 ----------SANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSE  218 (260)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHH
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhhhhhccccCCchHHHHHHHhhc
Confidence                      1245589999999999999988775   899999999999887533211100000000000000000 00


Q ss_pred             -CCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          223 -IKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       223 -~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                       ....++.+.+|+|+++++++....  . +..+++.+
T Consensus       219 ~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdg  255 (260)
T 1x1t_A          219 KQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDG  255 (260)
T ss_dssp             HCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             cCCCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECC
Confidence             001468999999999999987532  2 34566644

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.90  E-value=4.8e-23  Score=179.12  Aligned_cols=219  Identities=14%  Similarity=0.138  Sum_probs=158.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+... ..........  ...++.++.+|++|.+++.++++      
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK--EGVKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT--TTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999999999999998653 2222222221  12578999999999988877764      


Q ss_pred             -CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|++||+||.....      ..+..+..+++|+.++.++++++...- ...++|++||...+.               
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------  188 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE---------------  188 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH---------------
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC---------------
Confidence             789999999864321      223345789999999999999987652 245899999987774               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             ...+...|+.+|.+.+.+.+.++.++   |+++++++||.++++...........   .. .......     
T Consensus       189 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~---~~-~~~~~p~-----  252 (291)
T 3ijr_A          189 -------GNETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFDEKKV---SQ-FGSNVPM-----  252 (291)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSCHHHH---HH-TTTTSTT-----
T ss_pred             -------CCCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCCHHHH---HH-HHccCCC-----
Confidence                   11234589999999999999999876   89999999999988642111111100   00 0111111     


Q ss_pred             CccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      .++.+.+|+|+++++++....  . +..+++.+
T Consensus       253 ~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG  285 (291)
T 3ijr_A          253 QRPGQPYELAPAYVYLASSDSSYVTGQMIHVNG  285 (291)
T ss_dssp             SSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             CCCcCHHHHHHHHHHHhCCccCCCcCCEEEECC
Confidence            568899999999999987543  2 34566644

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.90  E-value=3.8e-23  Score=178.21  Aligned_cols=219  Identities=15%  Similarity=0.147  Sum_probs=149.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +++||||||+|+||++++++|+++|++|+++ .|+.+..+........  ...++.++.+|++|.+++.++++       
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE--SGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999887 4444444333322211  12578999999999988877664       


Q ss_pred             CccEEEEecccCCC-C-----CCCccchhhhhhhHHHHHHHHHHHhC------CCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 GCTGVFHLATPMDF-E-----SKDPENEVIRPTINGMVSIMRACKNA------KTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-~-----~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                      ++|+|||+||.... .     ..+..+..+++|+.++.++++++...      +...+||++||...+.  ..       
T Consensus       104 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~~-------  174 (272)
T 4e3z_A          104 RLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAIL--GS-------  174 (272)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHH--CC-------
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhcc--CC-------
Confidence            78999999996542 1     22334578899999999988877543      1246899999987664  11       


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  ......|+.+|.+.+.+++.++.++   |+++++++||.+.++..........   .... .....  
T Consensus       175 ------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~---~~~~-~~~~~--  236 (272)
T 4e3z_A          175 ------------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGGLPDR---AREM-APSVP--  236 (272)
T ss_dssp             ------------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------------------CCT--
T ss_pred             ------------CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccCChHH---HHHH-hhcCC--
Confidence                        1123479999999999999998876   8999999999999875332111000   0000 00011  


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                         ...+.+++|+|+++++++.....   +..+++++
T Consensus       237 ---~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdg  270 (272)
T 4e3z_A          237 ---MQRAGMPEEVADAILYLLSPSASYVTGSILNVSG  270 (272)
T ss_dssp             ---TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ---cCCCcCHHHHHHHHHHHhCCccccccCCEEeecC
Confidence               14578899999999999965432   44677754

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.90  E-value=8.5e-23  Score=173.39  Aligned_cols=217  Identities=16%  Similarity=0.162  Sum_probs=152.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++| +.+...........  ...++.++.+|++|++++.++++      
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK--LGSDAIAVRADVANAEDVTNMVKQTVDVF   80 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999 54443333221111  11468899999999998887765      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++.+++.    +.+ ..++|++||...+.  .          
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~----------  147 (246)
T 2uvd_A           81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASVVGVT--G----------  147 (246)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH--C----------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCHHhcC--C----------
Confidence             799999999865321     122345678999999777766553    345 57999999986653  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                .++...|+.+|...+.+.+.++.+.   |+++++++||.+.++.... ..........   .. ...   
T Consensus       148 ----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~~---~~-~p~---  209 (246)
T 2uvd_A          148 ----------NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDV-LDENIKAEML---KL-IPA---  209 (246)
T ss_dssp             ----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSC-CCTTHHHHHH---HT-CTT---
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhh-cCHHHHHHHH---hc-CCC---
Confidence                      1134589999999999998888764   8999999999998775332 1111111110   11 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                        .++++.+|+|++++.++....  . +..+++.+
T Consensus       210 --~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg  242 (246)
T 2uvd_A          210 --AQFGEAQDIANAVTFFASDQSKYITGQTLNVDG  242 (246)
T ss_dssp             --CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             --CCCcCHHHHHHHHHHHcCchhcCCCCCEEEECc
Confidence              358999999999999986532  2 33556644

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.90  E-value=3e-23  Score=178.37  Aligned_cols=214  Identities=16%  Similarity=0.123  Sum_probs=155.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+. ............  ...++.++.+|++|.+++.++++      
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~d~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAA--AGGEAFAVKADVSQESEVEALFAAVIERW  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            468999999999999999999999999999999843 333332222111  12578999999999998887765      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.             
T Consensus       105 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~-------------  170 (269)
T 4dmm_A          105 GRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIASVVGEM-------------  170 (269)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCHHHHH-------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhcC-------------
Confidence             799999999965421     223345688999999999988763    334 56999999987653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +......|+.+|.+.+.+.+.++.++   |+++++++||.+.++....    ......    ......   
T Consensus       171 ---------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----~~~~~~----~~~~p~---  230 (269)
T 4dmm_A          171 ---------GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE----LAAEKL----LEVIPL---  230 (269)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH----HHHHHH----GGGCTT---
T ss_pred             ---------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc----ccHHHH----HhcCCC---
Confidence                     11235589999999999999988874   8999999999998765321    111100    111111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC---C-CCceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN---A-KGRYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~---~-~~~~~~~~  255 (338)
                        .++.+.+|+|+++++++..+.   . +..+++.+
T Consensus       231 --~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdG  264 (269)
T 4dmm_A          231 --GRYGEAAEVAGVVRFLAADPAAAYITGQVINIDG  264 (269)
T ss_dssp             --SSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEEST
T ss_pred             --CCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECC
Confidence              468899999999999997632   2 44667754

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=7e-23  Score=179.41  Aligned_cols=222  Identities=12%  Similarity=0.071  Sum_probs=155.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcC-C-CCCCcEEEEecccCCCCCchhhhC-----
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLEL-P-KASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~-~-~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      +|+|+||||+|+||++++++|+++|++|++++|+.+....... +... . ....++.++.+|++|.+++.++++     
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   97 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDT   97 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998655443322 2110 0 112578999999999998887765     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|+|||+||.....     ..+..+..+++|+.++.++++++...    + ..++|++||.. +.  .         
T Consensus        98 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~-~~--~---------  164 (303)
T 1yxm_A           98 FGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPT-KA--G---------  164 (303)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCC-TT--C---------
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCeEEEEEeec-cc--C---------
Confidence              599999999954311     11223467899999999999987542    2 46899999976 32  1         


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                 ..+...|+.+|...+.+.+.+++++   |++++++|||.++|+.................... ..   
T Consensus       165 -----------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~p---  229 (303)
T 1yxm_A          165 -----------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK-IP---  229 (303)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG-ST---
T ss_pred             -----------CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhc-Cc---
Confidence                       1134589999999999999998885   89999999999999842111111000001100010 01   


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                        ...+.+++|+|++++.++....  . +..+++.+.
T Consensus       230 --~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG  264 (303)
T 1yxm_A          230 --AKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGG  264 (303)
T ss_dssp             --TSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             --ccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCC
Confidence              1358899999999999996533  2 335667543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.90  E-value=3.8e-23  Score=178.47  Aligned_cols=215  Identities=15%  Similarity=0.050  Sum_probs=153.0

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHH-CCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLE-RGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      +.+|+|+||||+|+||++++++|++ .|++|++++|+.+....... +...   ..++.++.+|++|.+++.++++    
T Consensus         2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE---GLSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc---CCeeEEEECCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999999 89999999998655443322 2111   1468899999999988887775    


Q ss_pred             ---CccEEEEecccCCCCCC-----CccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCC---------
Q 040253           77 ---GCTGVFHLATPMDFESK-----DPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHR---------  138 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~---------  138 (338)
                         ++|+|||+||.......     +..+..+++|+.++.++++++.... +..+||++||...+......         
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~  158 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR  158 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcc
Confidence               79999999986542211     2234678999999999999998763 13599999998776421000         


Q ss_pred             CCCcCCCCCCchh--h--------hhhccCCCchHHHHHHHHHHHHHHHHHH-------cCccEEEEcCCceeCCCCCCC
Q 040253          139 KPVYDETSWSDLD--F--------VRSVKMTGWMYFVSKTLAEQAAWKFAEE-------NNIDFISIIPSLVVGPFLTSS  201 (338)
Q Consensus       139 ~~~~~e~~~~~~~--~--------~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-------~~~~~~ilRp~~v~G~~~~~~  201 (338)
                      ...++|+++....  +        ...+..|...|+.+|.+.|.+++.++.+       .|+++++++||.+.++.... 
T Consensus       159 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~-  237 (276)
T 1wma_A          159 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP-  237 (276)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT-
T ss_pred             ccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc-
Confidence            0112222100000  0        0001124579999999999999888876       48999999999987654211 


Q ss_pred             CChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          202 MPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                                              ..+.+.+|+|++++.++..+
T Consensus       238 ------------------------~~~~~~~~~a~~~~~l~~~~  257 (276)
T 1wma_A          238 ------------------------KATKSPEEGAETPVYLALLP  257 (276)
T ss_dssp             ------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred             ------------------------cccCChhHhhhhHhhhhcCc
Confidence                                    24789999999999999754

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.90  E-value=7.2e-23  Score=176.35  Aligned_cols=220  Identities=20%  Similarity=0.167  Sum_probs=154.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |...+|+|+||||+|+||.+++++|+++|++|++++|+... .+.+......  ...++.++.+|++|.+++.++++   
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~  102 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE--KGYKAAVIKFDAASESDFIEAIQTIV  102 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHH
Confidence            33456899999999999999999999999999999995443 2333222211  12578999999999988877764   


Q ss_pred             ----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                          ++|+|||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.          
T Consensus       103 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~----------  171 (271)
T 4iin_A          103 QSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVASIIGER----------  171 (271)
T ss_dssp             HHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH----------
T ss_pred             HhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEechhhcC----------
Confidence                799999999965422     1223457789999999888877643    34 57999999987653          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +..+...|+.+|.+.+.+++.++.+   .|+++++++||.+..+....... ...   ... ..... 
T Consensus       172 ------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~---~~~-~~~~~-  233 (271)
T 4iin_A          172 ------------GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANLKD-ELK---ADY-VKNIP-  233 (271)
T ss_dssp             ------------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC----------------C-GGGCT-
T ss_pred             ------------CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhhcH-HHH---HHH-HhcCC-
Confidence                        1124568999999999999999887   48999999999997764322100 000   000 00011 


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                          ..++.+.+|+|++++.++....  . +..+++.+
T Consensus       234 ----~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdG  267 (271)
T 4iin_A          234 ----LNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNG  267 (271)
T ss_dssp             ----TCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----cCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCC
Confidence                1468899999999999997543  2 44566654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.90  E-value=4.1e-23  Score=179.84  Aligned_cols=219  Identities=13%  Similarity=0.097  Sum_probs=156.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+...  ..........  ...++.++.+|++|.+++.++++     
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE--CGRKAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH--TTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHH--cCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999886432  2222222211  12578999999999988877664     


Q ss_pred             --CccEEEEecccCCC-C-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 --GCTGVFHLATPMDF-E-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 --~~d~vi~~a~~~~~-~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                        ++|++||+||.... .     ..+..+..+++|+.++.++++++...- ...++|++||...+.              
T Consensus       126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~--------------  191 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ--------------  191 (294)
T ss_dssp             HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS--------------
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc--------------
Confidence              79999999996431 1     223345789999999999999987654 124999999988774              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCC-CCChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTS-SMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++.... ......   .... .....    
T Consensus       192 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~---~~~~-~~~~p----  255 (294)
T 3r3s_A          192 --------PSPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDK---IPQF-GQQTP----  255 (294)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGG---STTT-TTTST----
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHH---HHHH-HhcCC----
Confidence                    11245589999999999999999886   8999999999998864111 000000   0000 01111    


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                       ..++...+|+|+++++++....   .+.++++.+
T Consensus       256 -~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG  289 (294)
T 3r3s_A          256 -MKRAGQPAELAPVYVYLASQESSYVTAEVHGVCG  289 (294)
T ss_dssp             -TSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence             1468899999999999986543   244677744

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.90  E-value=5.1e-23  Score=176.93  Aligned_cols=223  Identities=15%  Similarity=0.137  Sum_probs=152.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|+||++++++|+++|++|++++|+.+................++.++.+|++|.+++.++++       
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3589999999999999999999999999999999875544332211100001468899999999998887765       


Q ss_pred             CccEEEEecccCCC-C-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF-E-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|+|||+||.... .     ..+..+..+++|+.++..+.+++    ++.+ ..++|++||...+.             
T Consensus        92 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-------------  157 (267)
T 1iy8_A           92 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR-------------  157 (267)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS-------------
T ss_pred             CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhhcc-------------
Confidence            68999999986432 1     11234567889998887665544    4445 57999999987653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC----CChhHHHhhhhcccCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS----MPPSLITALSPITRNEAH  219 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~  219 (338)
                               +..+...|+.+|...+.+.+.++.++   |+++++++||.+.++.....    .............. ...
T Consensus       158 ---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~p  227 (267)
T 1iy8_A          158 ---------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQ-VNP  227 (267)
T ss_dssp             ---------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHT-TCT
T ss_pred             ---------CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhc-cCC
Confidence                     11245689999999999999888774   89999999999987642100    00000000000001 111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      .     .++.+.+|+|+++++++..+.  ..| .+++.+
T Consensus       228 ~-----~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdG  261 (267)
T 1iy8_A          228 S-----KRYGEAPEIAAVVAFLLSDDASYVNATVVPIDG  261 (267)
T ss_dssp             T-----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             C-----CCCcCHHHHHHHHHHHcCccccCCCCCEEEECC
Confidence            1     458899999999999987542  234 556644

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.90  E-value=1.1e-22  Score=174.77  Aligned_cols=223  Identities=16%  Similarity=0.144  Sum_probs=154.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+.................+..+.+|++|.+++.++++   ++|+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            4689999999999999999999999999999999876544433222111112467889999999988877765   7999


Q ss_pred             EEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      +||+||.....     ..+..+..+++|+.++..+.+++    ++.+ ..++|++||...+.                  
T Consensus        89 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------------  149 (267)
T 3t4x_A           89 LINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK-EGRVIFIASEAAIM------------------  149 (267)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-EEEEEEECCGGGTS------------------
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEEcchhhcc------------------
Confidence            99999965421     11233456899999987776655    3445 67999999987663                  


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCC---------CCC--hhHHHhhhhcccCC
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTS---------SMP--PSLITALSPITRNE  217 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~---------~~~--~~~~~~~~~~~~~~  217 (338)
                          +..+...|+.+|.+.+.+.+.++.++   |++++++.||.+..+....         ...  .......... ...
T Consensus       150 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  224 (267)
T 3t4x_A          150 ----PSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKEN-RPT  224 (267)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHH-CTT
T ss_pred             ----CCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhcc-CCc
Confidence                11245689999999999999999886   6999999999987652110         000  0000000000 000


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      ...     .++.+.+|+|+++++++....  . +..+++.+
T Consensus       225 ~~~-----~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG  260 (267)
T 3t4x_A          225 SII-----QRLIRPEEIAHLVTFLSSPLSSAINGSALRIDG  260 (267)
T ss_dssp             CSS-----CSCBCTHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ccc-----cCccCHHHHHHHHHHHcCccccCccCCeEEECC
Confidence            111     468999999999999987433  2 44667744

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.90  E-value=1.3e-22  Score=175.02  Aligned_cols=215  Identities=18%  Similarity=0.149  Sum_probs=154.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|++|||||+|+||++++++|+++|++|++++|+.+.........     ..++.++.+|++|.+++.++++       +
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAACRVDVSDEQQIIAMVDACVAAFGG  103 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-----CSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999999876555443322     1568999999999988877664       7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||.....     ..+..+..+++|+.++.++.+++..    .+ ..++|++||...+.               
T Consensus       104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~---------------  167 (277)
T 3gvc_A          104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG-GGAIVNLSSLAGQV---------------  167 (277)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS---------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcc---------------
Confidence            89999999865421     2233456889999999998887643    44 57899999976653               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-CCCC---
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-AHYP---  221 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~---  221 (338)
                             +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++....     .   .....+.. ....   
T Consensus       168 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~-----~---~~~~~~~~~~~~~~~~  232 (277)
T 3gvc_A          168 -------AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQT-----A---MAMFDGALGAGGARSM  232 (277)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-----H---HTCC------CCHHHH
T ss_pred             -------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHH-----h---hhcchhhHHHHhhhhh
Confidence                   1124568999999999999988887   48999999999998764210     0   00000000 0000   


Q ss_pred             -CCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          222 -IIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       222 -~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                       .....++.+.+|+|+++++++....  . +..+++.+
T Consensus       233 ~~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdG  270 (277)
T 3gvc_A          233 IARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADG  270 (277)
T ss_dssp             HHHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             hhccccCCCCHHHHHHHHHHHcCCccCCccCcEEEECC
Confidence             0001358899999999999997543  2 44567754

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.90  E-value=6.5e-23  Score=180.51  Aligned_cols=218  Identities=17%  Similarity=0.107  Sum_probs=145.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++||||||+|+||.+++++|+++|++|++++|+.+................++.++.+|++|.+++.++++       
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            3579999999999999999999999999999999877655543322211111378999999999998887764       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhCC---------CccEEEEecCceeeeccCCCCCCc
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNAK---------TVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                      ++|+|||+||....     ...+..+..+++|+.++.++++++....         ...++|++||...+.  .      
T Consensus        87 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~--~------  158 (319)
T 3ioy_A           87 PVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL--A------  158 (319)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC--C------
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc--C------
Confidence            68999999996432     1223345689999999999988775432         145899999987764  1      


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC--hhHHHhhhhcccCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP--PSLITALSPITRNE  217 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~  217 (338)
                                    ......|+.||.+.+.+.+.++.++   |+++++++||.|.++.......  ..+.......... 
T Consensus       159 --------------~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-  223 (319)
T 3ioy_A          159 --------------AGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKT-  223 (319)
T ss_dssp             --------------CSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-------------------------
T ss_pred             --------------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHH-
Confidence                          1134589999997777777776554   8999999999998765332110  0000000000000 


Q ss_pred             CCCCCC-CCC-ccccHHHHHHHHHHhhcCC
Q 040253          218 AHYPII-KQG-QFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       218 ~~~~~~-~~~-~~i~v~D~a~~~~~~l~~~  245 (338)
                       ..... ... ..++.+|+|+.++.+++++
T Consensus       224 -~~~~~~~~~~~~~~pe~vA~~~~~al~~~  252 (319)
T 3ioy_A          224 -AVERLAGVHEFGMEPDVIGARVIEAMKAN  252 (319)
T ss_dssp             ------CCGGGSSBCHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHhhhcCCCHHHHHHHHHHHHHcC
Confidence             00000 001 2389999999999999885

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.90  E-value=2.7e-22  Score=172.36  Aligned_cols=222  Identities=14%  Similarity=0.073  Sum_probs=160.1

Q ss_pred             CCCcEEEEeCCchh--hHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            3 SIAETVCVTGASGF--IGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      ..+|+++||||+|+  ||.+++++|+++|++|++++|+....+....+..... ..++.++.+|++|.+++.++++    
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD-RNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS-SCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC-CCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            34689999999998  9999999999999999999998766555555443321 1368999999999998887764    


Q ss_pred             ---CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ---GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                         ++|++||+|+....         ...+.....+++|+.++.++++++...- ...++|++||...+.          
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  153 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL----------  153 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS----------
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc----------
Confidence               68999999986431         1122334678899999999999887653 135899999987653          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +.+....|+.+|.+.+.+.+.++.++   |+++++++||.+..+.........  ......... ...
T Consensus       154 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~--~~~~~~~~~-~~~  218 (266)
T 3oig_A          154 ------------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFN--SILKDIEER-APL  218 (266)
T ss_dssp             ------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHH--HHHHHHHHH-STT
T ss_pred             ------------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchH--HHHHHHHhc-CCC
Confidence                        11235589999999999999998875   899999999999876533221110  001100011 111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                           .++.+.+|+|+++++++....  . +..+++.+
T Consensus       219 -----~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdG  251 (266)
T 3oig_A          219 -----RRTTTPEEVGDTAAFLFSDMSRGITGENLHVDS  251 (266)
T ss_dssp             -----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -----CCCCCHHHHHHHHHHHcCCchhcCcCCEEEECC
Confidence                 357899999999999997533  2 34566643

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.90  E-value=5.4e-23  Score=174.60  Aligned_cols=220  Identities=15%  Similarity=0.170  Sum_probs=153.7

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh---C
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI---R   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~   76 (338)
                      |.. .+|+|+||||+|+||++++++|+++|++|++++|+.+.....   ...    .++.++.+|++|++++.+++   .
T Consensus         1 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~----~~~~~~~~D~~~~~~~~~~~~~~~   73 (246)
T 2ag5_A            1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL---EKY----PGIQTRVLDVTKKKQIDQFANEVE   73 (246)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG---GGS----TTEEEEECCTTCHHHHHHHHHHCS
T ss_pred             CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH---Hhc----cCceEEEeeCCCHHHHHHHHHHhC
Confidence            443 468999999999999999999999999999999975443222   111    36889999999998887654   4


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.  ..          
T Consensus        74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~~----------  140 (246)
T 2ag5_A           74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASSV--KG----------  140 (246)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTT--BC----------
T ss_pred             CCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechHhCc--CC----------
Confidence            799999999865421     1123446788999999999887643    34 57999999976653  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC--hhHHHhhhhcccCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP--PSLITALSPITRNEAHYPI  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~  222 (338)
                               +.+...|+.+|.+.+.+.+.++.++   |++++++|||.++++.......  ............. ...  
T Consensus       141 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~~--  208 (246)
T 2ag5_A          141 ---------VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKR-QKT--  208 (246)
T ss_dssp             ---------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHT-CTT--
T ss_pred             ---------CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhc-CCC--
Confidence                     0134589999999999999998875   8999999999999874211000  0000000000011 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                         .++.+.+|+|+++++++....  ..| .+++.+
T Consensus       209 ---~~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdg  241 (246)
T 2ag5_A          209 ---GRFATAEEIAMLCVYLASDESAYVTGNPVIIDG  241 (246)
T ss_dssp             ---SSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred             ---CCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence               358899999999999986533  234 556644

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.90  E-value=3e-23  Score=178.15  Aligned_cols=220  Identities=18%  Similarity=0.127  Sum_probs=156.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||.+++++|+++|++|++++|+.+............ ...++.++.+|++|.+++.++++       
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQ-FGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3589999999999999999999999999999999876554433221110 01578999999999998887764       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++.+++...    +...++|++||...+.              
T Consensus        98 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  163 (266)
T 4egf_A           98 GLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA--------------  163 (266)
T ss_dssp             SCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc--------------
Confidence            799999999965421     12234567899999999998877432    2135899999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  223 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+...... .....   ... ....+.   
T Consensus       164 --------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~---~~~-~~~~p~---  228 (266)
T 4egf_A          164 --------PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKS---APM-IARIPL---  228 (266)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHH---HHH-HTTCTT---
T ss_pred             --------CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHH---HHH-HhcCCC---
Confidence                    11245689999999999999998874   899999999999876321100 00000   000 111111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                        .++...+|+|+++++++....  . +..+++.+
T Consensus       229 --~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdG  261 (266)
T 4egf_A          229 --GRFAVPHEVSDAVVWLASDAASMINGVDIPVDG  261 (266)
T ss_dssp             --SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             --CCCcCHHHHHHHHHHHhCchhcCccCcEEEECC
Confidence              468899999999999987533  2 44566644

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.90  E-value=9.3e-23  Score=176.31  Aligned_cols=221  Identities=17%  Similarity=0.127  Sum_probs=156.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|++|||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       +
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA--AGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999987655544332221  12578999999999998877664       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh------CCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN------AKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~------~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      +|++||+||.....     ..+..+..+++|+.++.++.+++..      .+ ..++|++||...+.             
T Consensus       102 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~-~g~iV~isS~~~~~-------------  167 (279)
T 3sju_A          102 IGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAG-WGRIVNIASTGGKQ-------------  167 (279)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHT-CEEEEEECCGGGTS-------------
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcC-CcEEEEECChhhcc-------------
Confidence            89999999965421     1223346788999999999988754      34 57999999987653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC-------CChhHHHhhhhcccC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS-------MPPSLITALSPITRN  216 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~  216 (338)
                               +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++.....       ............ ..
T Consensus       168 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~  237 (279)
T 3sju_A          168 ---------GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERF-NA  237 (279)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHH-HT
T ss_pred             ---------CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHH-Hh
Confidence                     11244589999999999999999884   89999999999977531100       000000000000 11


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                      ....     .++.+++|+|+++++++....  . +..+++.++
T Consensus       238 ~~p~-----~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG  275 (279)
T 3sju_A          238 KIPL-----GRYSTPEEVAGLVGYLVTDAAASITAQALNVCGG  275 (279)
T ss_dssp             TCTT-----SSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTT
T ss_pred             cCCC-----CCCCCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence            1111     468899999999999987543  2 445666543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.89  E-value=7.5e-23  Score=173.76  Aligned_cols=216  Identities=18%  Similarity=0.156  Sum_probs=156.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|+||.+++++|+++|++|++++|+.+.........     ..++.++.+|++|.+++.++++       
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIAADISDPGSVKALFAEIQALTG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            4689999999999999999999999999999999876555443322     1578999999999998887765       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++.++    +++.+...++|++||...+.              
T Consensus        80 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  145 (247)
T 3rwb_A           80 GIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA--------------  145 (247)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH--------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc--------------
Confidence            799999999965421     1223456889999999999887    44433247999999987664              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+..+...............    .....    
T Consensus       146 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~----~~~~~----  209 (247)
T 3rwb_A          146 --------GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVE----MLQAM----  209 (247)
T ss_dssp             --------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHH----HHSSS----
T ss_pred             --------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHh----ccccc----
Confidence                    1124568999999999999999888   4899999999999875322110100000000    00011    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                       .++...+|+|+++.+++.....  .| .+++.+
T Consensus       210 -~r~~~pedva~~v~~L~s~~~~~itG~~i~vdG  242 (247)
T 3rwb_A          210 -KGKGQPEHIADVVSFLASDDARWITGQTLNVDA  242 (247)
T ss_dssp             -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence             3578899999999999875432  34 556654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.89  E-value=3.7e-23  Score=177.86  Aligned_cols=217  Identities=18%  Similarity=0.155  Sum_probs=156.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+..+.........  ..++..+.+|++|.+++.++++       
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--GLEGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--TCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999999999999999999999876554443322111  1467899999999988887765       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.              
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  169 (270)
T 3ftp_A          105 ALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR-GGRIVNITSVVGSA--------------  169 (270)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH--------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCC--------------
Confidence            799999999864421     2233456789999999999887742    33 46899999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+.... .........    ......    
T Consensus       170 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-~~~~~~~~~----~~~~p~----  232 (270)
T 3ftp_A          170 --------GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG-LPQEQQTAL----KTQIPL----  232 (270)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH-SCHHHHHHH----HTTCTT----
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh-cCHHHHHHH----HhcCCC----
Confidence                    11245689999999999999998874   8999999999997653211 111111111    111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                       .++.+.+|+|+++++++....   .+..+++.+
T Consensus       233 -~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG  265 (270)
T 3ftp_A          233 -GRLGSPEDIAHAVAFLASPQAGYITGTTLHVNG  265 (270)
T ss_dssp             -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCCCHHHHHHHHHHHhCCCcCCccCcEEEECC
Confidence             468899999999999986433   244667754

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.89  E-value=1.7e-22  Score=174.32  Aligned_cols=220  Identities=14%  Similarity=0.128  Sum_probs=158.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+..+.+......  ...++.++.+|++|.+++.++++       
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAG--VGGKALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH--TTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999987765554432221  12478899999999998888775       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++...    +...++|++||.+.+.  ..          
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~--~~----------  176 (276)
T 3r1i_A          109 GIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHI--IN----------  176 (276)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--CC----------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcc--cC----------
Confidence            799999999965422     12233456789999999998877542    2126899999976553  10          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              ...+...|+.+|.+.+.+.+.++.+   +|+++++++||.+..+..... .. ..   ... ......    
T Consensus       177 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~~-~~---~~~-~~~~p~----  238 (276)
T 3r1i_A          177 --------IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL-AD-YH---ALW-EPKIPL----  238 (276)
T ss_dssp             --------CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG-GG-GH---HHH-GGGSTT----
T ss_pred             --------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc-hH-HH---HHH-HhcCCC----
Confidence                    1124568999999999999999988   489999999999987653211 11 11   100 111111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                       .++...+|+|+++++++....  . +..+++.+.
T Consensus       239 -~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG  272 (276)
T 3r1i_A          239 -GRMGRPEELTGLYLYLASAASSYMTGSDIVIDGG  272 (276)
T ss_dssp             -SSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCCcCHHHHHHHHHHHcCccccCccCcEEEECcC
Confidence             458899999999999997533  2 345666543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.89  E-value=1.4e-22  Score=173.93  Aligned_cols=222  Identities=14%  Similarity=0.149  Sum_probs=157.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|++|||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       +
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTD--TGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999987655544332211  12578999999999998877764       7


Q ss_pred             ccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           78 CTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        78 ~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      +|++||+||....      ...+..+..+++|+.++.++++++...-  ...++|++||...+.                
T Consensus        89 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~----------------  152 (264)
T 3ucx_A           89 VDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH----------------  152 (264)
T ss_dssp             CSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC----------------
T ss_pred             CcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc----------------
Confidence            8999999986421      1112345678999999999998865431  025999999987663                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChh-------HHHhhhhcccCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPS-------LITALSPITRNEAH  219 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~-------~~~~~~~~~~~~~~  219 (338)
                            +..+...|+.+|...+.+.+.++.+   +|+++++++||.++++.........       ........ .....
T Consensus       153 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p  225 (264)
T 3ucx_A          153 ------SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAA-AAGSD  225 (264)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHH-HTTSS
T ss_pred             ------CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHH-hccCC
Confidence                  1124558999999999999999887   5899999999999876421100000       00000000 11111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                      .     .++.+.+|+|+++++++....   .+..+++.+.
T Consensus       226 ~-----~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG  260 (264)
T 3ucx_A          226 L-----KRLPTEDEVASAILFMASDLASGITGQALDVNCG  260 (264)
T ss_dssp             S-----SSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             c-----ccCCCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence            1     468899999999999987533   2446677543

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.89  E-value=1.1e-22  Score=176.65  Aligned_cols=238  Identities=15%  Similarity=0.106  Sum_probs=159.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc---------HHHHHHHhc-CCCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN---------KKKVKHLLE-LPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|+||||||+|+||.+++++|+++|++|++++|+...         ...++.... ......++.++.+|++|.+++.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            36899999999999999999999999999999987221         122211110 01112578999999999998877


Q ss_pred             hhC-------CccEEEEecccCCCC---CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCc
Q 040253           74 PIR-------GCTGVFHLATPMDFE---SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        74 ~~~-------~~d~vi~~a~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                      +++       ++|++||+||.....   ..+..+..+++|+.++.++++++...- ...++|++||...+...  ...+.
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~--~~~~~  166 (287)
T 3pxx_A           89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAA--AQPPG  166 (287)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHH--HCCC-
T ss_pred             HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhcccc--ccccc
Confidence            765       799999999975422   233445789999999999999987652 24689999998776421  11122


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC-
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA-  218 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-  218 (338)
                      .+..         +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++.....   .............. 
T Consensus       167 ~~~~---------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~~~  234 (287)
T 3pxx_A          167 AGGP---------QGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSA---PMYRQFRPDLEAPSR  234 (287)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSH---HHHHHHCTTSSSCCH
T ss_pred             cccc---------CCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc---chhhhhccccccchh
Confidence            2222         11244589999999999999999886   89999999999988754320   00000000000000 


Q ss_pred             -------CCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          219 -------HYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       219 -------~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                             ........++.+.+|+|+++++++....  . +..+++.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdG  281 (287)
T 3pxx_A          235 ADALLAFPAMQAMPTPYVEASDISNAVCFLASDESRYVTGLQFKVDA  281 (287)
T ss_dssp             HHHHHHGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             HHHHhhhhhhcccCCCCCCHHHHHhhHheecchhhcCCCCceEeECc
Confidence                   0000001568999999999999986533  2 44566644

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.89  E-value=3.4e-23  Score=175.79  Aligned_cols=209  Identities=16%  Similarity=0.169  Sum_probs=135.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC---CCchhhh--
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE---GNFDEPI--   75 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~--   75 (338)
                      |+..+|++|||||+|+||++++++|++ |++|++++|+.+.......   .    .++.++.+|+++.   +.+.+.+  
T Consensus         1 m~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~---~----~~~~~~~~D~~~~~~~~~~~~~~~~   72 (245)
T 3e9n_A            1 MSLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE---I----EGVEPIESDIVKEVLEEGGVDKLKN   72 (245)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT---S----TTEEEEECCHHHHHHTSSSCGGGTT
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh---h----cCCcceecccchHHHHHHHHHHHHh
Confidence            666789999999999999999999987 8999999998665544432   1    4689999999876   3333333  


Q ss_pred             -CCccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           76 -RGCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        76 -~~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                       .++|+|||+||......     .+..+..+++|+.++.++.+++...-  ...++|++||...+.              
T Consensus        73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~--------------  138 (245)
T 3e9n_A           73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG--------------  138 (245)
T ss_dssp             CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC--------------------
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc--------------
Confidence             37999999998654221     12234678899999888877764321  025899999988774              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+++.++.+   .|+++++++||.+.++........         .+..  +   .
T Consensus       139 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~---------~~~~--~---~  196 (245)
T 3e9n_A          139 --------PHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQGLMDS---------QGTN--F---R  196 (245)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------C
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhhhhhh---------hhcc--c---c
Confidence                    1124568999999999999999887   489999999999987653211100         0000  0   1


Q ss_pred             CCccccHHHHHHHHHHhhcCCCCCCceEE
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNAKGRYIC  253 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~~~~~~~  253 (338)
                      ...+++.+|+|++++.+++.+..+.++++
T Consensus       197 ~~~~~~p~dvA~~i~~l~~~~~~~~~~~i  225 (245)
T 3e9n_A          197 PEIYIEPKEIANAIRFVIDAGETTQITNV  225 (245)
T ss_dssp             CGGGSCHHHHHHHHHHHHTSCTTEEEEEE
T ss_pred             cccCCCHHHHHHHHHHHHcCCCccceeee
Confidence            14588999999999999998877777765

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.89  E-value=3.7e-23  Score=180.34  Aligned_cols=239  Identities=16%  Similarity=0.149  Sum_probs=161.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+....... +........++.++.+|++|++++.++++      
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999998765444322 21111000178999999999998887764      


Q ss_pred             -CccEEEEecccCCCCC-------CCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFES-------KDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~-------~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|+|||+||......       .+..+..+++|+.++.++++++...-  ...++|++||...+.  ..         
T Consensus       105 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~--~~---------  173 (297)
T 1xhl_A          105 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGP--QA---------  173 (297)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSS--SC---------
T ss_pred             CCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhcc--CC---------
Confidence             7999999998643211       12344688999999999988876431  016999999987663  10         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCC-Chh----HHHhhhhcccCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSM-PPS----LITALSPITRNEA  218 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~----~~~~~~~~~~~~~  218 (338)
                                ..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++...... ...    ........ ....
T Consensus       174 ----------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~~~  242 (297)
T 1xhl_A          174 ----------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSR-KECI  242 (297)
T ss_dssp             ----------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHC-TTTC
T ss_pred             ----------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHH-HhcC
Confidence                      013458999999999999998876   4899999999999886421110 000    00001111 1111


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCC---CC-CCceEEec-CCCCHHHHHHHHHH
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHP---NA-KGRYICSS-HPATILELAKFLRE  269 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~---~~-~~~~~~~~-~~~t~~e~~~~i~~  269 (338)
                      ..     .++...+|+|+++++++...   .. +..+++.+ ......+.+..+.+
T Consensus       243 p~-----~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~~~~~~~~~~~~~~  293 (297)
T 1xhl_A          243 PV-----GHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGSTLVMGMQTHDLMS  293 (297)
T ss_dssp             TT-----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGGGCCGGGGSCHHH
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCccccccccccchhh
Confidence            11     45899999999999998754   23 44566644 44555554444433

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.89  E-value=2.6e-22  Score=170.24  Aligned_cols=214  Identities=16%  Similarity=0.158  Sum_probs=153.7

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|+++||||+|+||++++++|+++|++|++++|+.+........       .++.++.+|++|++++.++++    
T Consensus         1 m~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~   73 (245)
T 1uls_A            1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-------VGAHPVVMDVADPASVERGFAEALA   73 (245)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-------TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------cCCEEEEecCCCHHHHHHHHHHHHH
Confidence            666678999999999999999999999999999999986544433221       137889999999988877664    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|++||+||.....     ..+..+..+++|+.++.++.+++..    .+ ..++|++||...++   .       
T Consensus        74 ~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~---~-------  142 (245)
T 1uls_A           74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTASRVYLG---N-------  142 (245)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECCGGGGC---C-------
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEccchhcC---C-------
Confidence               589999999864321     1123346788999999999887654    24 57999999987322   1       


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                   .+...|+.+|...+.+.+.++.+.   |+++++++||.+..+.... ..........   .. ... 
T Consensus       143 -------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~~~~~~~~~---~~-~p~-  203 (245)
T 1uls_A          143 -------------LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK-VPEKVREKAI---AA-TPL-  203 (245)
T ss_dssp             -------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS-SCHHHHHHHH---HT-CTT-
T ss_pred             -------------CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhh-cCHHHHHHHH---hh-CCC-
Confidence                         134589999999999999888774   8999999999998765322 1111111110   11 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                          ..+.+.+|+|++++.++....  ..| .+.+.+
T Consensus       204 ----~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdg  236 (245)
T 1uls_A          204 ----GRAGKPLEVAYAALFLLSDESSFITGQVLFVDG  236 (245)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECC
Confidence                348899999999999987532  234 455644

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.89  E-value=4.3e-23  Score=178.60  Aligned_cols=211  Identities=18%  Similarity=0.168  Sum_probs=147.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+||||||+|+||++++++|+++|++|++++|+......+...........++.++.+|++|++++.++++       +
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  111 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG  111 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999999999999866544433222111111468899999999998877765       7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHH----HHHHHHHHHhCCCc--cEEEEecCceeeeccCCCCCCcCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTING----MVSIMRACKNAKTV--RRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~----~~~l~~~~~~~~~~--~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      +|+|||+||.....     ..+..+..+++|+.+    +..+++.+++.+ .  .++|++||...+.  ..         
T Consensus       112 iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~-~~~g~iv~isS~~~~~--~~---------  179 (279)
T 1xg5_A          112 VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERN-VDDGHIININSMSGHR--VL---------  179 (279)
T ss_dssp             CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCSCEEEEECCGGGTS--CC---------
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCCceEEEEcChhhcc--cC---------
Confidence            99999999864321     112345678899999    666667777665 4  7999999987663  10         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE-----NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                               +..+...|+.+|.+.+.+++.++.+     .++++++++||.+.++...............   ..     
T Consensus       180 ---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~---~~-----  242 (279)
T 1xg5_A          180 ---------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAA---TY-----  242 (279)
T ss_dssp             ---------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHH---HH-----
T ss_pred             ---------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhhhcccChhHHhh---hc-----
Confidence                     1124558999999999988888765     3799999999999775410000000000000   00     


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                        ....+++.+|+|++++.++..+.
T Consensus       243 --~~~~~~~~~dvA~~i~~l~~~~~  265 (279)
T 1xg5_A          243 --EQMKCLKPEDVAEAVIYVLSTPA  265 (279)
T ss_dssp             --C---CBCHHHHHHHHHHHHHSCT
T ss_pred             --ccccCCCHHHHHHHHHHHhcCCc
Confidence              01357899999999999998654

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.89  E-value=5.2e-23  Score=176.45  Aligned_cols=209  Identities=16%  Similarity=0.140  Sum_probs=151.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+||||||+|+||++++++|+++|++|++++|+.+..             .++.++.+|++|.+++.++++       +
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   74 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGE-------------AKYDHIECDVTNPDQVKASIDHIFKEYGS   74 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCS-------------CSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccC-------------CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            58999999999999999999999999999999986541             467899999999998887765       6


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.               
T Consensus        75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~---------------  138 (264)
T 2dtx_A           75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSR-DPSIVNISSVQASI---------------  138 (264)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SCEEEEECCGGGTS---------------
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCchhcc---------------
Confidence            99999999864421     1223456889999999888887753    33 57999999987663               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCceeCCCCCCCC------Chh-HHHhhhhcccCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN--IDFISIIPSLVVGPFLTSSM------PPS-LITALSPITRNEAH  219 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~------~~~-~~~~~~~~~~~~~~  219 (338)
                             +..+...|+.+|...+.+.+.++.+++  +++++++||.+.++......      ... ........ .....
T Consensus       139 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p  210 (264)
T 2dtx_A          139 -------ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEW-GHEHP  210 (264)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHH-HHHST
T ss_pred             -------CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHH-HhcCC
Confidence                   112456899999999999999998865  99999999999765311000      000 00000000 00011


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      .     .++++++|+|++++.++....  . +..+++.+
T Consensus       211 ~-----~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG  244 (264)
T 2dtx_A          211 M-----QRIGKPQEVASAVAFLASREASFITGTCLYVDG  244 (264)
T ss_dssp             T-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             C-----CCCcCHHHHHHHHHHHhCchhcCCCCcEEEECC
Confidence            1     458999999999999987542  2 33556644

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=2.7e-22  Score=171.52  Aligned_cols=222  Identities=17%  Similarity=0.153  Sum_probs=151.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++++. +...........  ...++.++.+|++|.+++.++++      
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK--LGRSALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT--TTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999985543 333332222211  12578999999999998887765      


Q ss_pred             -CccEEEEecccCC-CC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMD-FE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~-~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|++||+||... ..     ..+..+..+++|+.++.++.+++...- ...++|++||...+.  .            
T Consensus        85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~--~------------  150 (259)
T 3edm_A           85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRD--G------------  150 (259)
T ss_dssp             CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHH--C------------
T ss_pred             CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhcc--C------------
Confidence             7999999998542 11     112235678999999999999987764 124899999987662  0            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN--IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                             +..+...|+.+|.+.+.+.+.++.+++  ++++++.||.+..+...........   ... .....     ..
T Consensus       151 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~~~~~~---~~~-~~~~p-----~~  214 (259)
T 3edm_A          151 -------GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFTKPEVR---ERV-AGATS-----LK  214 (259)
T ss_dssp             -------CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-------------------------------
T ss_pred             -------CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCcccccccChHHH---HHH-HhcCC-----CC
Confidence                   112455899999999999999998863  9999999999987643221100000   000 00011     14


Q ss_pred             ccccHHHHHHHHHHhhcCCC---CCCceEEecCC
Q 040253          227 QFVHLDDLCSAHIFLFEHPN---AKGRYICSSHP  257 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~~  257 (338)
                      ++.+.+|+|+++++++....   .+..+++.+..
T Consensus       215 r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~  248 (259)
T 3edm_A          215 REGSSEDVAGLVAFLASDDAAYVTGACYDINGGV  248 (259)
T ss_dssp             CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCS
T ss_pred             CCcCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence            68899999999999987543   24467775543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.89  E-value=3.2e-23  Score=178.23  Aligned_cols=231  Identities=15%  Similarity=0.093  Sum_probs=152.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+|+||||+|+||++++++|+++|++|++++|+.+................++.++.+|++|++++.++++       +
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR   86 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            479999999999999999999999999999999865544332222111112468999999999988887764       5


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHH----HHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIM----RACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~----~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      +|+|||+||...   .+..+..+++|+.++..+.    +.+++.+  ...++|++||...+.  .               
T Consensus        87 id~lv~~Ag~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~---------------  146 (267)
T 2gdz_A           87 LDILVNNAGVNN---EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--P---------------  146 (267)
T ss_dssp             CCEEEECCCCCC---SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS--C---------------
T ss_pred             CCEEEECCCCCC---hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC--C---------------
Confidence            899999999653   2445678899998665554    4444432  147899999987764  1               


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHH--H---HcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFA--E---ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~--~---~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                           ..+...|+.+|...+.+.+.++  .   ..|+++++++||.+.++....................  ........
T Consensus       147 -----~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  219 (267)
T 2gdz_A          147 -----VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDH--IKDMIKYY  219 (267)
T ss_dssp             -----CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHH--HHHHHHHH
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHH--HHHHhccc
Confidence                 1134589999999999888742  2   3589999999999977632110000000000000000  00000013


Q ss_pred             ccccHHHHHHHHHHhhcCCCCCC-ceEEec-CCCCHHH
Q 040253          227 QFVHLDDLCSAHIFLFEHPNAKG-RYICSS-HPATILE  262 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~-~~~t~~e  262 (338)
                      .+++.+|+|++++.++......| .+++++ ...++.|
T Consensus       220 ~~~~~~dvA~~v~~l~s~~~~~G~~~~v~gg~~~~~~~  257 (267)
T 2gdz_A          220 GILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQD  257 (267)
T ss_dssp             CCBCHHHHHHHHHHHHHCTTCSSCEEEEETTTEEEECC
T ss_pred             cCCCHHHHHHHHHHHhcCcCCCCcEEEecCCCcccccC
Confidence            47899999999999998654444 677754 5455444

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.89  E-value=4.1e-23  Score=178.01  Aligned_cols=198  Identities=11%  Similarity=0.045  Sum_probs=148.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG--LGAKVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh--cCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            468999999999999999999999999999999986554443222111  12478999999999988877664       


Q ss_pred             CccEEEEecccCCCCC-----CCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFES-----KDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||......     .+..+..+++|+.++.++++++.    +.+ ..+||++||...+..             
T Consensus       108 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~~-------------  173 (272)
T 1yb1_A          108 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHVS-------------  173 (272)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CCC-------------
T ss_pred             CCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEechhhcCC-------------
Confidence            7899999998654221     12234678899999887776653    345 689999999877641             


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc------CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN------NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~------~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                               ..+...|+.+|.+.+.+++.++.++      |++++++|||.+.++....    ..           ..  
T Consensus       174 ---------~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~----~~-----------~~--  227 (272)
T 1yb1_A          174 ---------VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN----PS-----------TS--  227 (272)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC----TH-----------HH--
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc----cc-----------cc--
Confidence                     1134589999999999999988774      8999999999998765211    00           00  


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                         ..++++.+|+|++++.++..+.
T Consensus       228 ---~~~~~~~~dva~~i~~~~~~~~  249 (272)
T 1yb1_A          228 ---LGPTLEPEEVVNRLMHGILTEQ  249 (272)
T ss_dssp             ---HCCCCCHHHHHHHHHHHHHTTC
T ss_pred             ---ccCCCCHHHHHHHHHHHHHcCC
Confidence               1357899999999999998753

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.89  E-value=1.1e-22  Score=173.94  Aligned_cols=216  Identities=19%  Similarity=0.220  Sum_probs=152.4

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|++|||||+|+||.+++++|+++|++|++++|+.+..  .+.+      ..++.++.+|++|.+++.++++    
T Consensus         5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~   76 (257)
T 3tl3_A            5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV--VADL------GDRARFAAADVTDEAAVASALDLAET   76 (257)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH--HHHT------CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH--HHhc------CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            334568999999999999999999999999999999954322  1211      1578999999999998887775    


Q ss_pred             --CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhC-----------CCccEEEEecCceeeec
Q 040253           77 --GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNA-----------KTVRRLVFTSSAGTLDV  134 (338)
Q Consensus        77 --~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~-----------~~~~~~v~~Ss~~v~~~  134 (338)
                        ++|++||+||....         ...+..+..+++|+.++.++++++...           +...++|++||...+. 
T Consensus        77 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-  155 (257)
T 3tl3_A           77 MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD-  155 (257)
T ss_dssp             HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C-
T ss_pred             hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC-
Confidence              89999999985421         223345678999999999998887542           1145899999987763 


Q ss_pred             cCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhh
Q 040253          135 EEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALS  211 (338)
Q Consensus       135 ~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~  211 (338)
                                           +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+.... ..........
T Consensus       156 ---------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-~~~~~~~~~~  213 (257)
T 3tl3_A          156 ---------------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS-LPEEARASLG  213 (257)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC----CHHHHHHHH
T ss_pred             ---------------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhh-ccHHHHHHHH
Confidence                                 11134589999999999999988874   8999999999998775432 1111111111


Q ss_pred             hcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          212 PITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                         ......     .++.+.+|+|++++++++.+...| .+++.+
T Consensus       214 ---~~~~~~-----~r~~~p~dva~~v~~l~s~~~itG~~i~vdG  250 (257)
T 3tl3_A          214 ---KQVPHP-----SRLGNPDEYGALAVHIIENPMLNGEVIRLDG  250 (257)
T ss_dssp             ---HTSSSS-----CSCBCHHHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred             ---hcCCCC-----CCccCHHHHHHHHHHHhcCCCCCCCEEEECC
Confidence               111110     358899999999999998755555 456643

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.89  E-value=4.5e-22  Score=170.87  Aligned_cols=219  Identities=16%  Similarity=0.120  Sum_probs=152.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHh-cCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLL-ELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+......... ..  ...++.++.+|++|.+++.++++      
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK--YGVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999865544332211 10  01468889999999988877765      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCce-eeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAG-TLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~-v~~~~~~~~~~~~e~  145 (338)
                       ++|+|||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||.. ...            
T Consensus        98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~------------  164 (267)
T 1vl8_A           98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEEV------------  164 (267)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTCC------------
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCcchhcc------------
Confidence             799999999865421     112234678899999999888763    344 67999999976 221            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +..+...|+.+|...+.+++.++.++   |+++++++||.+.++........  .......... ...  
T Consensus       165 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~--~~~~~~~~~~-~p~--  229 (267)
T 1vl8_A          165 ----------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSD--PEKLDYMLKR-IPL--  229 (267)
T ss_dssp             ----------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTC--HHHHHHHHHT-CTT--
T ss_pred             ----------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccC--hHHHHHHHhh-CCC--
Confidence                      11244589999999999999988774   89999999999977642110000  0000000011 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                         .++++.+|+|+++++++....  ..| .+.+.+
T Consensus       230 ---~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG  262 (267)
T 1vl8_A          230 ---GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDG  262 (267)
T ss_dssp             ---SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ---CCCcCHHHHHHHHHHHcCccccCCcCCeEEECC
Confidence               358899999999999987532  234 455543

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.89  E-value=3.7e-22  Score=168.70  Aligned_cols=210  Identities=21%  Similarity=0.238  Sum_probs=150.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||++++++|+++|++|++++|+.+..  .+.+        ++..+.+|++| +++.++++       +
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~--~~~~--------~~~~~~~D~~~-~~~~~~~~~~~~~~g~   70 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA--AQSL--------GAVPLPTDLEK-DDPKGLVKRALEALGG   70 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH--HHHH--------TCEEEECCTTT-SCHHHHHHHHHHHHTS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--HHhh--------CcEEEecCCch-HHHHHHHHHHHHHcCC
Confidence            57999999999999999999999999999999987542  1111        26889999999 88776553       7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||.....     ..+..+..+++|+.++.++.+++.    +.+ ..++|++||...+...             
T Consensus        71 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~~~-------------  136 (239)
T 2ekp_A           71 LHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGSVTTFTAG-------------  136 (239)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCC-------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchhhccCC-------------
Confidence            99999999864321     122345678899999998888773    344 6799999998776411             


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                             ...+...|+.+|.+.+.+.+.++.++   |++++++|||.+.++...... ....   ...... ....    
T Consensus       137 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~---~~~~~~-~~p~----  201 (239)
T 2ekp_A          137 -------GPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPEL---YEPITA-RIPM----  201 (239)
T ss_dssp             -------TTSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHH---HHHHHT-TCTT----
T ss_pred             -------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHH---HHHHHh-cCCC----
Confidence                   00245689999999999999998875   899999999999876421100 0000   010111 1111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                       .++...+|+|++++.++....  ..| .+++.+
T Consensus       202 -~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdg  234 (239)
T 2ekp_A          202 -GRWARPEEIARVAAVLCGDEAEYLTGQAVAVDG  234 (239)
T ss_dssp             -SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHcCchhcCCCCCEEEECC
Confidence             358899999999999987532  234 455644

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.89  E-value=5.5e-23  Score=179.63  Aligned_cols=213  Identities=17%  Similarity=0.060  Sum_probs=149.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+||||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       +
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG--QGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999999987665544332211  12578999999999998887765       7


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|+|||+||....     ...+..+..+++|+.++.++++++..    .+...++|++||...+.               
T Consensus       109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  173 (301)
T 3tjr_A          109 VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV---------------  173 (301)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS---------------
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC---------------
Confidence            9999999996532     12233456889999999999988643    22136899999987663               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhh---hcccCC-CCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALS---PITRNE-AHYP  221 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~---~~~~~~-~~~~  221 (338)
                             +..+...|+.||.+.+.+.+.++.++   |+++++++||.+..+...     .......   .....+ ..+.
T Consensus       174 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~-----~~~~~~~~~~~~~~~~~~~~~  241 (301)
T 3tjr_A          174 -------PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVS-----NSERIRGADYGMSATPEGAFG  241 (301)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHH-----HHHHHC---------------
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccccc-----ccccccchhhccccChhhhcc
Confidence                   11245689999999999999988875   899999999988765311     0000000   000000 0111


Q ss_pred             C-CCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 I-IKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~-~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      . ....++++++|+|++++.+++++.
T Consensus       242 ~~~~~~~~~~pedvA~~i~~~l~~~~  267 (301)
T 3tjr_A          242 PLPTQDESVSADDVARLTADAILANR  267 (301)
T ss_dssp             -------CCCHHHHHHHHHHHHHHTC
T ss_pred             ccccccCCCCHHHHHHHHHHHHhcCC
Confidence            1 112468999999999999998753

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.89  E-value=2.5e-23  Score=178.98  Aligned_cols=218  Identities=16%  Similarity=0.094  Sum_probs=156.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN--VGHDAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH--TTCCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            358999999999999999999999999999999987655444322211  12578999999999998888775       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++.+++..    .+ ..++|++||...+.              
T Consensus       103 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS~~~~~--------------  167 (271)
T 4ibo_A          103 DVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGSLTSEL--------------  167 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhCC--------------
Confidence            799999999965421     2233456799999999999777643    34 46999999976553              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  223 (338)
                              +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++...... .........  ...  ..   
T Consensus       168 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~--~~~--p~---  232 (271)
T 4ibo_A          168 --------ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVK--ART--PA---  232 (271)
T ss_dssp             --------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHH--HHS--TT---
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHH--hcC--CC---
Confidence                    1124568999999999999999887   4899999999999876421100 000000000  011  11   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                        .++...+|+|+++++++....   .+..+++.+
T Consensus       233 --~r~~~pedva~~v~~L~s~~~~~itG~~i~vdG  265 (271)
T 4ibo_A          233 --KRWGKPQELVGTAVFLSASASDYVNGQIIYVDG  265 (271)
T ss_dssp             --CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             --CCCcCHHHHHHHHHHHhCccccCCCCcEEEECC
Confidence              458899999999999987543   244567754

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.89  E-value=2.5e-22  Score=173.66  Aligned_cols=218  Identities=14%  Similarity=0.099  Sum_probs=145.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +|++|||||+|+||++++++|+++|++|++++|+. +..........  ....++.++.+|++|++++.++++       
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELS--GLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH--HTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999999743 33332222111  112578999999999999888775       


Q ss_pred             CccEEEEecccCC--C-----CCCCccchhhhhhhHHHHHHHHHHHhC----C--CccEEEEecCceeeeccCCCCCCcC
Q 040253           77 GCTGVFHLATPMD--F-----ESKDPENEVIRPTINGMVSIMRACKNA----K--TVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ~~d~vi~~a~~~~--~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                      ++|++||+||...  .     ...+..+..+++|+.++.++++++...    +  ...++|++||...+.          
T Consensus       107 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~----------  176 (280)
T 4da9_A          107 RIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM----------  176 (280)
T ss_dssp             CCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------------
T ss_pred             CCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc----------
Confidence            7999999998632  1     122334577889999999988876443    1  135899999987663          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++........ ..   ........+ 
T Consensus       177 ------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~-~~---~~~~~~~~p-  239 (280)
T 4da9_A          177 ------------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAVSGK-YD---GLIESGLVP-  239 (280)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------
T ss_pred             ------------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhcchh-HH---HHHhhcCCC-
Confidence                        1123458999999999999999988   489999999999987753321110 00   000000111 


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                          ..++...+|+|+++++++.....   +..+++.+
T Consensus       240 ----~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG  273 (280)
T 4da9_A          240 ----MRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADG  273 (280)
T ss_dssp             ------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEEST
T ss_pred             ----cCCcCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence                14688999999999999976542   44566644

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.89  E-value=3e-22  Score=172.15  Aligned_cols=207  Identities=15%  Similarity=0.170  Sum_probs=154.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      .+|+||||||+|+||++++++|+++|   ++|++++|+.+....+..+...   ..++.++.+|++|.+++.++++    
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~~   96 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN---HSNIHILEIDLRNFDAYDKLVADIEG   96 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH---CTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhcc---CCceEEEEecCCChHHHHHHHHHHHH
Confidence            46899999999999999999999999   9999999987765544443321   2478999999999999888776    


Q ss_pred             -----CccEEEEecccCC-CC-----CCCccchhhhhhhHHHHHHHHHHHhC----------C----CccEEEEecCcee
Q 040253           77 -----GCTGVFHLATPMD-FE-----SKDPENEVIRPTINGMVSIMRACKNA----------K----TVRRLVFTSSAGT  131 (338)
Q Consensus        77 -----~~d~vi~~a~~~~-~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----------~----~~~~~v~~Ss~~v  131 (338)
                           ++|+|||+||... ..     ..+..+..+++|+.++.++++++...          +    ...+||++||...
T Consensus        97 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~  176 (267)
T 1sny_A           97 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG  176 (267)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred             hcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecccc
Confidence                 7999999998654 11     11233467889999999998887543          1    0368999999877


Q ss_pred             eeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHH
Q 040253          132 LDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLIT  208 (338)
Q Consensus       132 ~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~  208 (338)
                      +....                   +..+...|+.+|.+.+.+++.++.+   +|++++++|||.+..+....        
T Consensus       177 ~~~~~-------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------  229 (267)
T 1sny_A          177 SIQGN-------------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS--------  229 (267)
T ss_dssp             CSTTC-------------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT--------
T ss_pred             cccCC-------------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC--------
Confidence            64110                   0124568999999999999998887   48999999999987543210        


Q ss_pred             hhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCceE-EecCC
Q 040253          209 ALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGRYI-CSSHP  257 (338)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~~~-~~~~~  257 (338)
                                       ..++..+|+|+.++.++....  ..|.|+ +.+..
T Consensus       230 -----------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~  264 (267)
T 1sny_A          230 -----------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTP  264 (267)
T ss_dssp             -----------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCB
T ss_pred             -----------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcC
Confidence                             135788999999999997532  245553 34433

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.89  E-value=2.1e-22  Score=174.23  Aligned_cols=229  Identities=16%  Similarity=0.158  Sum_probs=157.3

Q ss_pred             CC-CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCC-CCCcEEEEecccCCCCCchhhhC--
Q 040253            1 MG-SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPK-ASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         1 m~-~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      |+ ..+|+++||||+|+||++++++|+++|++|++++|+.+............. ...++.++.+|++|.+++.++++  
T Consensus         1 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   80 (280)
T 1xkq_A            1 MPRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST   80 (280)
T ss_dssp             -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHH
Confidence            44 346899999999999999999999999999999998765544332221111 01278999999999988877664  


Q ss_pred             -----CccEEEEecccCCCCC---------CCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCC
Q 040253           77 -----GCTGVFHLATPMDFES---------KDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~~~---------~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                           ++|+|||+||......         .+..+..+++|+.++.++++++...-  ...++|++||...+.  ..   
T Consensus        81 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~~---  155 (280)
T 1xkq_A           81 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP--QA---  155 (280)
T ss_dssp             HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS--SC---
T ss_pred             HHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccC--CC---
Confidence                 6999999998643211         12245678899999999998876431  016999999987663  10   


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCC-Chh----HHHhhhh
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSM-PPS----LITALSP  212 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~-~~~----~~~~~~~  212 (338)
                                      ..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++...... ...    .......
T Consensus       156 ----------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~  219 (280)
T 1xkq_A          156 ----------------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMAS  219 (280)
T ss_dssp             ----------------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHH
T ss_pred             ----------------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHH
Confidence                            023458999999999999998866   4899999999999987422110 000    0001111


Q ss_pred             cccCCCCCCCCCCCccccHHHHHHHHHHhhcCC---CC-CCceEEecC
Q 040253          213 ITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP---NA-KGRYICSSH  256 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~---~~-~~~~~~~~~  256 (338)
                      . ......     .++.+.+|+|+++++++...   .. +..+++.+.
T Consensus       220 ~-~~~~p~-----~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG  261 (280)
T 1xkq_A          220 H-KECIPI-----GAAGKPEHIANIILFLADRNLSFYILGQSIVADGG  261 (280)
T ss_dssp             C-TTTCTT-----SSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTT
T ss_pred             H-HcCCCC-----CCCCCHHHHHHHHHHhcCcccccCccCCeEEECCC
Confidence            1 111111     46899999999999998653   22 445666443

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.89  E-value=9.7e-23  Score=174.84  Aligned_cols=210  Identities=17%  Similarity=0.125  Sum_probs=150.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.....             ....+.+|++|.+++.++++       
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-------------~~~~~~~Dv~~~~~~~~~~~~~~~~~g   93 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-------------ADLHLPGDLREAAYADGLPGAVAAGLG   93 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC-------------CSEECCCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-------------hhhccCcCCCCHHHHHHHHHHHHHhcC
Confidence            3689999999999999999999999999999999765431             22455889999887766553       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++    ++.+ ..++|++||...+.              
T Consensus        94 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~--------------  158 (266)
T 3uxy_A           94 RLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVASCWGLR--------------  158 (266)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTB--------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHhCC--------------
Confidence            799999999965421     22334567889999999999887    4444 57999999987653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC---ChhHHHhhhhcccCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM---PPSLITALSPITRNEAHYP  221 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~  221 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++......   ........... ...... 
T Consensus       159 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~-~~~~p~-  228 (266)
T 3uxy_A          159 --------PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAEL-GRTVPL-  228 (266)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHH-HTTSTT-
T ss_pred             --------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHH-HhcCCC-
Confidence                    11245689999999999999998876   899999999999876421100   00000000000 111111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                          .++.+.+|+|+++++++.....   +..+++.+
T Consensus       229 ----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG  261 (266)
T 3uxy_A          229 ----GRIAEPEDIADVVLFLASDAARYLCGSLVEVNG  261 (266)
T ss_dssp             ----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECc
Confidence                4688999999999999976432   44567744

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.89  E-value=1e-22  Score=174.98  Aligned_cols=212  Identities=14%  Similarity=0.148  Sum_probs=152.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.....            ..+..+.+|++|.+++.++++       
T Consensus        13 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (269)
T 3vtz_A           13 TDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV------------NVSDHFKIDVTNEEEVKEAVEKTTKKYG   80 (269)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT------------TSSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc------------CceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999765431            356788999999998887764       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.              
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  145 (269)
T 3vtz_A           81 RIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIASVQSYA--------------  145 (269)
T ss_dssp             CCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhcc--------------
Confidence            799999999965421     1122346788999999998887643    34 57999999988774              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCC-------CChhHHHhhhhcccCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSS-------MPPSLITALSPITRNEA  218 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~  218 (338)
                              +..+...|+.+|.+.+.+.+.++.++  ++++++++||.+.++.....       ............ ....
T Consensus       146 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  216 (269)
T 3vtz_A          146 --------ATKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEW-GRQH  216 (269)
T ss_dssp             --------BCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHH-HHHS
T ss_pred             --------CCCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHH-HhcC
Confidence                    11245689999999999999999887  89999999999987642100       000000000000 0011


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH  256 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~  256 (338)
                      ..     .++.+.+|+|+++++++....   .+..+++.+.
T Consensus       217 p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  252 (269)
T 3vtz_A          217 PM-----GRIGRPEEVAEVVAFLASDRSSFITGACLTVDGG  252 (269)
T ss_dssp             TT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCC
Confidence            11     468899999999999987543   2445677543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.89  E-value=1.7e-22  Score=171.97  Aligned_cols=209  Identities=15%  Similarity=0.109  Sum_probs=144.9

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ..+|+++||||+|+||.+++++|+++|++|++++|+.+............  ..++.++.+|++|.+++.++++      
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA--GGRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            34689999999999999999999999999999999887665554332211  2578999999999998888775      


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+..+..+++|+.++..+.+++.    +.+ ..++|++||...+.              
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  147 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGATASLR--------------  147 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTC--------------
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHHcC--------------
Confidence            68999999996542     1122345678999999998888763    334 47999999976653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccE-EEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDF-ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~-~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                              +......|+.+|.+.+.+.+.++.++   |+++ +++.||.+..+..........    .       .+...
T Consensus       148 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~~~~~~----~-------~~~~~  208 (252)
T 3h7a_A          148 --------GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRERREQMF----G-------KDALA  208 (252)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------------------
T ss_pred             --------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhccchhhh----h-------hhhhc
Confidence                    11234589999999999999998875   8999 899999887654322111000    0       00000


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA  247 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~  247 (338)
                      ....+...+|+|+++++++..+..
T Consensus       209 ~~~~~~~pedvA~~~~~l~s~~~~  232 (252)
T 3h7a_A          209 NPDLLMPPAAVAGAYWQLYQQPKS  232 (252)
T ss_dssp             -----CCHHHHHHHHHHHHHCCGG
T ss_pred             CCccCCCHHHHHHHHHHHHhCchh
Confidence            012389999999999999987543

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.89  E-value=3.5e-22  Score=170.83  Aligned_cols=220  Identities=14%  Similarity=0.154  Sum_probs=153.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+++||||+|+||++++++|+++|++|++++|+.+.  ..........  ...++.++.+|++|.+++.++++      
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA--ADQKAVFVGLDVTDKANFDSAIDEAAEKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999998765  3333222211  12578999999999988877765      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCc-cEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTV-RRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~-~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++...    + . .++|++||...+.            
T Consensus        80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------  146 (258)
T 3a28_C           80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELG-VKGKIINAASIAAIQ------------  146 (258)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCCEEEEECCGGGTS------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCcEEEEECcchhcc------------
Confidence             799999999865421     12234567899999999998877542    4 4 7999999987653            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-------hhHHHhhhhccc
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-------PSLITALSPITR  215 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-------~~~~~~~~~~~~  215 (338)
                                +..+...|+.+|...+.+.+.++.++   |+++++++||.+..+.......       .......... .
T Consensus       147 ----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~  215 (258)
T 3a28_C          147 ----------GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEY-S  215 (258)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHH-H
T ss_pred             ----------CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHH-H
Confidence                      11234589999999999999988774   8999999999997653110000       0000000000 0


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      .....     .++.+.+|+|+++++++....  ..| .+++.+
T Consensus       216 ~~~p~-----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG  253 (258)
T 3a28_C          216 SSIAL-----GRPSVPEDVAGLVSFLASENSNYVTGQVMLVDG  253 (258)
T ss_dssp             TTCTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             hcCCC-----CCccCHHHHHHHHHHHhCcccCCCCCCEEEECC
Confidence            00111     358899999999999997542  233 556644

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.89  E-value=2.4e-22  Score=172.53  Aligned_cols=221  Identities=17%  Similarity=0.174  Sum_probs=151.3

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..+|++|||||+|+||.+++++|+++|++|++.+++.. ....+......  ...++.++.+|++|.+++.++++     
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEA--AGGKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34688999999999999999999999999998866443 33333222211  12578999999999998887764     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                        ++|++||+||.....     ..+..+..+++|+.++.++++++...- ...++|++||...+.               
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~---------------  167 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL---------------  167 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH---------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc---------------
Confidence              799999999865421     112234677899999999998876542 135899999987653               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +.+....|+.+|.+.+.+.+.++.++   |++++++.||.+..+..............    ....+.     
T Consensus       168 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~----~~~~p~-----  231 (267)
T 3u5t_A          168 -------LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEGKSDEVRDRF----AKLAPL-----  231 (267)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC-----------CHHHH----HTSSTT-----
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCccccccCCHHHHHHH----HhcCCC-----
Confidence                   11234589999999999999999886   89999999999987643221111111111    111111     


Q ss_pred             CccccHHHHHHHHHHhhcCCCC--CC-ceEEecC
Q 040253          226 GQFVHLDDLCSAHIFLFEHPNA--KG-RYICSSH  256 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~~  256 (338)
                      .++...+|+|+++++++.....  .| .+++.+.
T Consensus       232 ~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  265 (267)
T 3u5t_A          232 ERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG  265 (267)
T ss_dssp             CSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred             CCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence            4688999999999999975432  44 4566443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.89  E-value=2.4e-22  Score=173.47  Aligned_cols=222  Identities=14%  Similarity=0.112  Sum_probs=155.8

Q ss_pred             CC-CCCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            1 MG-SIAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         1 m~-~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      |+ ..+|+|+||||+  |+||++++++|+++|++|++++|+.+.....+.+....   +++.++.+|++|.+++.++++ 
T Consensus         1 M~~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~   77 (275)
T 2pd4_A            1 MGFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL---NSPYVYELDVSKEEHFKSLYNS   77 (275)
T ss_dssp             -CTTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEcCCCCHHHHHHHHHH
Confidence            55 346899999999  99999999999999999999999876333333332211   247889999999988877664 


Q ss_pred             ------CccEEEEecccCCC---------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCC
Q 040253           77 ------GCTGVFHLATPMDF---------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        77 ------~~d~vi~~a~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                            ++|++||+||....         ...+..+..+++|+.++.++++++...- ...++|++||...+.       
T Consensus        78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-------  150 (275)
T 2pd4_A           78 VKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK-------  150 (275)
T ss_dssp             HHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-------
T ss_pred             HHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcC-------
Confidence                  68999999986432         1122345688999999999999987652 125899999976542       


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE  217 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~  217 (338)
                                     +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++.......  ........... 
T Consensus       151 ---------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~~~~~~~~~~-  212 (275)
T 2pd4_A          151 ---------------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIAD--FRMILKWNEIN-  212 (275)
T ss_dssp             ---------------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTT--HHHHHHHHHHH-
T ss_pred             ---------------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccc--cHHHHHHHHhc-
Confidence                           11234589999999999999988876   8999999999998875322110  00000100011 


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ...     ..+.+.+|+|++++.++....  ..| .+++.+
T Consensus       213 ~p~-----~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdg  248 (275)
T 2pd4_A          213 APL-----RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDA  248 (275)
T ss_dssp             STT-----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             CCc-----CCCCCHHHHHHHHHHHhCccccCCCCCEEEECC
Confidence            011     347789999999999986432  234 455644

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.89  E-value=3.5e-22  Score=170.06  Aligned_cols=206  Identities=18%  Similarity=0.207  Sum_probs=148.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++|+|+||||+|+||++++++|+++|++|++++|+.+..             ..+.++.+|++|++++.++++       
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~Dl~d~~~v~~~~~~~~~~~g   86 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP-------------EGFLAVKCDITDTEQVEQAYKEIEETHG   86 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTSHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh-------------ccceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            368999999999999999999999999999999976542             236889999999988877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+..+..+++|+.++.++++++..    .+ ..++|++||...+.  .           
T Consensus        87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~--~-----------  152 (253)
T 2nm0_A           87 PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSVVGLL--G-----------  152 (253)
T ss_dssp             SCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCCCCCC--C-----------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECchhhCC--C-----------
Confidence            57999999986432     12344567889999999998886643    34 57999999976653  0           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               ..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+.... .........    ......    
T Consensus       153 ---------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-~~~~~~~~~----~~~~p~----  214 (253)
T 2nm0_A          153 ---------SAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV-LTDEQRANI----VSQVPL----  214 (253)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC----------CHHHH----HTTCTT----
T ss_pred             ---------CCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh-cCHHHHHHH----HhcCCC----
Confidence                     0123589999999999999988874   7999999999987664221 110000000    011111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                       .++++.+|+|++++.++..+.  ..| .+.+.+
T Consensus       215 -~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdG  247 (253)
T 2nm0_A          215 -GRYARPEEIAATVRFLASDDASYITGAVIPVDG  247 (253)
T ss_dssp             -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHhCccccCCcCcEEEECC
Confidence             358899999999999997543  234 455543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.89  E-value=1.7e-22  Score=172.62  Aligned_cols=221  Identities=17%  Similarity=0.181  Sum_probs=152.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||++++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       +
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ--AGGHAVAVKVDVSDRDQVFAAVEQARKTLGG   79 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            57999999999999999999999999999999986554443222111  11468899999999998887775       7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||.....     ..+..+..+++|+.++.++++++...    +...++|++||...+.  .            
T Consensus        80 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~------------  145 (256)
T 1geg_A           80 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV--G------------  145 (256)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS--C------------
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcC--C------------
Confidence            99999999864321     11233467899999998888776542    2136899999976553  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh--h-----HHHhhhhcccCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP--S-----LITALSPITRNEA  218 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~--~-----~~~~~~~~~~~~~  218 (338)
                              .++...|+.+|...+.+.+.++.++   |+++++++||.+.++........  .     ........ ....
T Consensus       146 --------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  216 (256)
T 1geg_A          146 --------NPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEF-AKRI  216 (256)
T ss_dssp             --------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHH-HTTC
T ss_pred             --------CCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHH-HhcC
Confidence                    1134589999999999999988764   89999999999987642100000  0     00000000 0111


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ..     .++.+.+|+|+++++++....  ..| .+.+.+
T Consensus       217 p~-----~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdG  251 (256)
T 1geg_A          217 TL-----GRLSEPEDVAACVSYLASPDSDYMTGQSLLIDG  251 (256)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCccccCCCCCEEEeCC
Confidence            11     358999999999999987542  234 556644

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.89  E-value=2.4e-22  Score=169.27  Aligned_cols=197  Identities=19%  Similarity=0.165  Sum_probs=147.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|++|||||+|+||++++++|+++|++|++++|+.+..........     .++.++.+|++|.+++.++++       +
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   77 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----NAVIGIVADLAHHEDVDVAFAAAVEWGGL   77 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            6899999999999999999999999999999998766555443331     368999999999988877664       6


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      +|++||+||....     ...+..+..+++|+.++..+++++...  ....++|++||...+.  .              
T Consensus        78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~--~--------------  141 (235)
T 3l6e_A           78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV--G--------------  141 (235)
T ss_dssp             CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS--S--------------
T ss_pred             CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC--C--------------
Confidence            8999999996432     122334568899999999988877432  1123999999977663  1              


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                            ......|+.+|.+.+.+.+.++.++   |+++++++||.+..+.....     .       ..       ....
T Consensus       142 ------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-----~-------~~-------~~~~  196 (235)
T 3l6e_A          142 ------KANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT-----D-------HV-------DPSG  196 (235)
T ss_dssp             ------CSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC------------------------------
T ss_pred             ------CCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhcc-----C-------CC-------CCcC
Confidence                  1134589999999999999999875   79999999998865532110     0       00       0125


Q ss_pred             cccHHHHHHHHHHhhcCCCC
Q 040253          228 FVHLDDLCSAHIFLFEHPNA  247 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~  247 (338)
                      +...+|+|++++.++.++..
T Consensus       197 ~~~pedvA~~v~~l~~~~~~  216 (235)
T 3l6e_A          197 FMTPEDAAAYMLDALEARSS  216 (235)
T ss_dssp             CBCHHHHHHHHHHHTCCCSS
T ss_pred             CCCHHHHHHHHHHHHhCCCC
Confidence            88999999999999986543

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.89  E-value=9.5e-23  Score=179.89  Aligned_cols=231  Identities=16%  Similarity=0.094  Sum_probs=164.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC----------CCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRD----------PDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      +|++|||||+|+||.+++++|+++|++|++++|+          .+..........  ....++.++.+|++|.+++.++
T Consensus        27 gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           27 GRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEIT--AAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHH--HTTCEEEEECCCTTSHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHH--hcCCcEEEEECCCCCHHHHHHH
Confidence            5789999999999999999999999999999987          333333322211  1125789999999999988877


Q ss_pred             hC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC---------CccEEEEecCceeee
Q 040253           75 IR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK---------TVRRLVFTSSAGTLD  133 (338)
Q Consensus        75 ~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---------~~~~~v~~Ss~~v~~  133 (338)
                      ++       ++|++||+||.....     ..+..+..+++|+.++.++++++...-         ...++|++||...+.
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~  184 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGLQ  184 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHcc
Confidence            65       799999999965421     223345688999999999988774331         015899999987663


Q ss_pred             ccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhh
Q 040253          134 VEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITAL  210 (338)
Q Consensus       134 ~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  210 (338)
                                            +..+...|+.+|.+.+.+.+.++.+   +|+++++++|| +..+..........    
T Consensus       185 ----------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~~~~----  237 (322)
T 3qlj_A          185 ----------------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFAEMM----  237 (322)
T ss_dssp             ----------------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCCC------
T ss_pred             ----------------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhhhhh----
Confidence                                  1124558999999999999999988   48999999998 54443221111100    


Q ss_pred             hhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEecC------------------CCCHHHHHHHHHH
Q 040253          211 SPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSSH------------------PATILELAKFLRE  269 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~~------------------~~t~~e~~~~i~~  269 (338)
                          ..     .....+++..+|+|+++++++....   .+..+++.+.                  ..++.|+++.+.+
T Consensus       238 ----~~-----~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~  308 (322)
T 3qlj_A          238 ----AT-----QDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVAD  308 (322)
T ss_dssp             ---------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHH
T ss_pred             ----hc-----cccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHH
Confidence                00     0111457789999999999986543   2445566432                  3478999999998


Q ss_pred             hCCC
Q 040253          270 KYPE  273 (338)
Q Consensus       270 ~~~~  273 (338)
                      .++.
T Consensus       309 ~~~~  312 (322)
T 3qlj_A          309 LLGK  312 (322)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            8764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.89  E-value=2.2e-22  Score=172.49  Aligned_cols=201  Identities=19%  Similarity=0.129  Sum_probs=146.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++||||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA--AGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--hCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            368999999999999999999999999999999987665544332211  12578999999999998877664       


Q ss_pred             CccEEEEecccCC------CCCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMD------FESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|+|||+||...      ....+..+..+++|+.++.++++++..    .+ ..+||++||...+.             
T Consensus       106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~-------------  171 (262)
T 3rkr_A          106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAK-RGHIINISSLAGKN-------------  171 (262)
T ss_dssp             CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCEEEEECSSCSSC-------------
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CceEEEEechhhcC-------------
Confidence            5899999998622      112223456889999999999887643    44 57999999987663             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +..+...|+.+|.+.+.+++.++.+   .|+++++++||.+..+.....     .       .. .     
T Consensus       172 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-----~-------~~-~-----  224 (262)
T 3rkr_A          172 ---------PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVGL-----S-------AK-K-----  224 (262)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------------------------
T ss_pred             ---------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCccccc-----c-------cc-c-----
Confidence                     1124568999999999999998877   489999999998876532110     0       00 0     


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA  247 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~  247 (338)
                      ....++..+|+|++++.++.....
T Consensus       225 ~~~~~~~p~dvA~~v~~l~s~~~~  248 (262)
T 3rkr_A          225 SALGAIEPDDIADVVALLATQADQ  248 (262)
T ss_dssp             ----CCCHHHHHHHHHHHHTCCTT
T ss_pred             ccccCCCHHHHHHHHHHHhcCccc
Confidence            114578999999999999987543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.89  E-value=2.9e-22  Score=174.68  Aligned_cols=219  Identities=15%  Similarity=0.038  Sum_probs=158.4

Q ss_pred             CCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|++|||||+|  +||.+++++|+++|++|++++|+.+..+....+....   .++.++.+|++|.+++.++++     
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL---GVKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH---TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc---CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            358999999998  9999999999999999999999876555444433211   346889999999998887764     


Q ss_pred             --CccEEEEecccCC---------CCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMD---------FESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|++||+||...         ....+.....+++|+.++.++++++...- ...++|++||...+.           
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~-----------  174 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK-----------  174 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc-----------
Confidence              6899999998643         12223345788999999999999987653 135999999987653           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +......|+.+|.+.+.+.+.++.++   |+++++++||.+..+..... . ............ ... 
T Consensus       175 -----------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~-~-~~~~~~~~~~~~-~p~-  239 (296)
T 3k31_A          175 -----------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGI-S-DFHYILTWNKYN-SPL-  239 (296)
T ss_dssp             -----------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSC-H-HHHHHHHHHHHH-STT-
T ss_pred             -----------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcc-c-chHHHHHHHHhc-CCC-
Confidence                       11234589999999999999998875   89999999999988754321 1 111111100011 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                          .++...+|+|+++++++....  . +..+++.+
T Consensus       240 ----~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG  272 (296)
T 3k31_A          240 ----RRNTTLDDVGGAALYLLSDLGRGTTGETVHVDC  272 (296)
T ss_dssp             ----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCCCHHHHHHHHHHHcCCccCCccCCEEEECC
Confidence                457889999999999997532  2 34566644

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.89  E-value=8.8e-23  Score=175.20  Aligned_cols=222  Identities=16%  Similarity=0.082  Sum_probs=155.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|.||.+++++|+++|++|++++|+.+................++.++.+|++|.+++.++++       
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999876554443322111111358999999999988877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+..+..+++|+.++.++.+++..    .+ ..++|++||...+.              
T Consensus        87 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  151 (265)
T 3lf2_A           87 CASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRA-DAAIVCVNSLLASQ--------------  151 (265)
T ss_dssp             SCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTST-TEEEEEEEEGGGTS--------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CeEEEEECCcccCC--------------
Confidence            68999999986432     11223456789999999999888743    33 57899999976653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC--------C-hhHHHhhhhccc
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM--------P-PSLITALSPITR  215 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--------~-~~~~~~~~~~~~  215 (338)
                              +......|+.+|.+.+.+.+.++.++   |+++++++||.+.++......        . ........  ..
T Consensus       152 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--~~  221 (265)
T 3lf2_A          152 --------PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLA--RN  221 (265)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHH--HH
T ss_pred             --------CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHh--hc
Confidence                    11235689999999999999998876   899999999999875311000        0 00000000  01


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ...+.     .++...+|+|+++++++....  ..| .+++.+
T Consensus       222 ~~~p~-----~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG  259 (265)
T 3lf2_A          222 KQIPL-----GRLGKPIEAARAILFLASPLSAYTTGSHIDVSG  259 (265)
T ss_dssp             TTCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESS
T ss_pred             cCCCc-----CCCcCHHHHHHHHHHHhCchhcCcCCCEEEECC
Confidence            11111     468899999999999987433  234 456644

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.89  E-value=1.5e-22  Score=171.75  Aligned_cols=213  Identities=17%  Similarity=0.180  Sum_probs=152.8

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHH-CCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLE-RGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..+|++|||||+|+||++++++|++ .|++|++.+|+.+...            ..+.++.+|++|.+++.++++     
T Consensus         2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~~~   69 (244)
T 4e4y_A            2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA------------ENLKFIKADLTKQQDITNVLDIIKNV   69 (244)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCC------------TTEEEEECCTTCHHHHHHHHHHTTTC
T ss_pred             CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccccc------------ccceEEecCcCCHHHHHHHHHHHHhC
Confidence            3578999999999999999999998 7899999988765211            467999999999998888775     


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      ++|++||+||....     ...+..+..+++|+.++.++++++...- ...++|++||...+.                 
T Consensus        70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~-----------------  132 (244)
T 4e4y_A           70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI-----------------  132 (244)
T ss_dssp             CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC-----------------
T ss_pred             CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc-----------------
Confidence            78999999996432     1122345678999999999999987653 124899999987663                 


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhH-------HHhhhhcccCCCCC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSL-------ITALSPITRNEAHY  220 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~-------~~~~~~~~~~~~~~  220 (338)
                           +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++..........       ....... ......
T Consensus       133 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~  206 (244)
T 4e4y_A          133 -----AKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQE-EKEFPL  206 (244)
T ss_dssp             -----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHH-HTTSTT
T ss_pred             -----CCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHH-hhcCCC
Confidence                 1123458999999999999999885   48999999999998764211000000       0000000 111111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                           .++.+.+|+|+++++++.....   +..+++.+
T Consensus       207 -----~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdG  239 (244)
T 4e4y_A          207 -----NRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDG  239 (244)
T ss_dssp             -----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -----CCCcCHHHHHHHHHHHhcCccccccCCeEeECC
Confidence                 4688999999999999975432   34566644

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.89  E-value=3.2e-22  Score=172.09  Aligned_cols=217  Identities=16%  Similarity=0.165  Sum_probs=153.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      +|+++||||+|+||.+++++|+++|++|++++|+.. ..........  ....++.++.+|++|.+++.++++       
T Consensus        25 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           25 KRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHER--DAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHH--TTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHH--hcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999985443 2222221111  112578999999999998877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++++++..    .+ ..++|++||...+.              
T Consensus       103 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  167 (269)
T 3gk3_A          103 KVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR-FGRIVNIGSVNGSR--------------  167 (269)
T ss_dssp             CCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH--------------
T ss_pred             CCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEeCChhhcc--------------
Confidence            799999999865421     1223456789999999998887643    34 57999999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+++.++.++   |+++++++||.+..+..........    .     ........
T Consensus       168 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~----~-----~~~~~~~~  230 (269)
T 3gk3_A          168 --------GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAVPQDVL----E-----AKILPQIP  230 (269)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC----------------CCSGGGCT
T ss_pred             --------CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhhchhHH----H-----HHhhhcCC
Confidence                    11245689999999999999988875   8999999999998765332111000    0     00000111


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      ..++.+.+|+|+++++++.....   +..+++++
T Consensus       231 ~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdg  264 (269)
T 3gk3_A          231 VGRLGRPDEVAALIAFLCSDDAGFVTGADLAING  264 (269)
T ss_dssp             TSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEEST
T ss_pred             cCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECC
Confidence            14588999999999999976432   44667754

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.89  E-value=8.2e-23  Score=174.20  Aligned_cols=219  Identities=13%  Similarity=0.121  Sum_probs=152.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+||||||+|+||++++++|+++|++|++++|+.+.........     ..++.++.+|++|++++.++++       
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-----CTTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3689999999999999999999999999999999865544433222     1468999999999988877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|+|||+||.....     ..+..+..+++|+.++..+.+++    ++.+  .++|++||...+.              
T Consensus        80 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~--------------  143 (253)
T 1hxh_A           80 TLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWL--------------  143 (253)
T ss_dssp             SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTS--------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhcC--------------
Confidence            579999999864321     11234567889988887766654    3333  7999999987763              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                              +..+...|+.+|...+.+.+.++.+.     |++++++|||.++++..............  ........  
T Consensus       144 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~--~~~~~~~~--  211 (253)
T 1hxh_A          144 --------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEM--VLHDPKLN--  211 (253)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHH--HBCBTTTB--
T ss_pred             --------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccchhhhHHH--HhhhhccC--
Confidence                    11244589999999999999988773     89999999999998742110000000000  00100000  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEecC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSSH  256 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~~  256 (338)
                       ...++.+.+|+|++++.++..+.  ..| .+++.+.
T Consensus       212 -p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG  247 (253)
T 1hxh_A          212 -RAGRAYMPERIAQLVLFLASDESSVMSGSELHADNS  247 (253)
T ss_dssp             -TTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSS
T ss_pred             -ccCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCC
Confidence             01458899999999999997543  234 5566543

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.89  E-value=4.2e-22  Score=169.33  Aligned_cols=208  Identities=15%  Similarity=0.105  Sum_probs=145.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+.   .+.+       ..+.++ +|+  .+++.++++   ++|+
T Consensus        18 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~~~-------~~~~~~-~D~--~~~~~~~~~~~~~iD~   84 (249)
T 1o5i_A           18 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL---LKRS-------GHRYVV-CDL--RKDLDLLFEKVKEVDI   84 (249)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHT-------CSEEEE-CCT--TTCHHHHHHHSCCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH---HHhh-------CCeEEE-eeH--HHHHHHHHHHhcCCCE
Confidence            46899999999999999999999999999999997622   2221       246677 999  445555543   8999


Q ss_pred             EEEecccCCCC-----CCCccchhhhhhhHHHHHHHHH----HHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      |||+||.....     ..+..+..+++|+.++.++.++    +++.+ ..++|++||...+.  .               
T Consensus        85 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~---------------  146 (249)
T 1o5i_A           85 LVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSFSVIS--P---------------  146 (249)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C---------------
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcchHhcC--C---------------
Confidence            99999864321     1223356788999987766544    44555 68999999988774  1               


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcc
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF  228 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                           ..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+.++..............    ......     .++
T Consensus       147 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~----~~~~p~-----~~~  212 (249)
T 1o5i_A          147 -----IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQV----ESQIPM-----RRM  212 (249)
T ss_dssp             -----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHH----HTTSTT-----SSC
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccccchhhHHHHH----HhcCCC-----CCC
Confidence                 123458999999999999998877   489999999999998753210011000000    011111     468


Q ss_pred             ccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          229 VHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                      .+.+|+|++++.++....  . +..+++.+.
T Consensus       213 ~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG  243 (249)
T 1o5i_A          213 AKPEEIASVVAFLCSEKASYLTGQTIVVDGG  243 (249)
T ss_dssp             BCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             cCHHHHHHHHHHHcCccccCCCCCEEEECCC
Confidence            899999999999987532  2 345666543

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.89  E-value=2.3e-22  Score=171.80  Aligned_cols=216  Identities=13%  Similarity=0.134  Sum_probs=153.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEE-cCCCcHHHHH-HHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATV-RDPDNKKKVK-HLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..|+||||||+|+||++++++|+++|++|++++ |+........ .+...   ..++.++.+|++|.+++.++++     
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL---GFDFYASEGNVGDWDSTKQAFDKVKAE   88 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc---CCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999988 5554443332 22221   2578999999999988877764     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|++||+||.....     ..+..+..+++|+.++.++.+++    ++.+ ..++|++||...+.            
T Consensus        89 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~------------  155 (256)
T 3ezl_A           89 VGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQK------------  155 (256)
T ss_dssp             TCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGGG------------
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhcc------------
Confidence              789999999865421     12234568899999988887665    3444 57999999977653            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++...............   ..  ..  
T Consensus       156 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~---~~--~~--  218 (256)
T 3ezl_A          156 ----------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVA---TI--PV--  218 (256)
T ss_dssp             ----------SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHH---HS--TT--
T ss_pred             ----------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccccCHHHHHHHHh---cC--CC--
Confidence                      11245689999999999999988874   899999999999876432211111111111   11  11  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                         .++.+.+|+|+++++++....  . +..+++.+
T Consensus       219 ---~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdg  251 (256)
T 3ezl_A          219 ---RRLGSPDEIGSIVAWLASEESGFSTGADFSLNG  251 (256)
T ss_dssp             ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ---CCCcCHHHHHHHHHHHhCCcccCCcCcEEEECC
Confidence               458899999999999986432  2 34567754

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.89  E-value=2.9e-22  Score=170.13  Aligned_cols=206  Identities=17%  Similarity=0.140  Sum_probs=147.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+...             .+..+.+|++|++++.++++       
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~D~~~~~~~~~~~~~~~~~~g   80 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK-------------GLFGVEVDVTDSDAVDRAFTAVEEHQG   80 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-------------TSEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH-------------HhcCeeccCCCHHHHHHHHHHHHHHcC
Confidence            3589999999999999999999999999999999865432             22248899999988877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+..+..+++|+.++.++++++..    .+ ..++|++||...+.  .           
T Consensus        81 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--~-----------  146 (247)
T 1uzm_A           81 PVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLW--G-----------  146 (247)
T ss_dssp             SCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC----------------
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CCEEEEECCHhhcc--C-----------
Confidence            68999999986442     11233457889999999999887743    44 57999999986653  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                               ..+...|+.+|...+.+.+.++.+.   |+++++++||.+.++.... ........   .... ...    
T Consensus       147 ---------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~~~~~~~---~~~~-~p~----  208 (247)
T 1uzm_A          147 ---------IGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA-LDERIQQG---ALQF-IPA----  208 (247)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-SCHHHHHH---HGGG-CTT----
T ss_pred             ---------CCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh-cCHHHHHH---HHhc-CCC----
Confidence                     1134589999999999999988774   8999999999997653111 11111100   0011 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                       .++.+.+|+|+++++++....   .+..+++.+
T Consensus       209 -~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdg  241 (247)
T 1uzm_A          209 -KRVGTPAEVAGVVSFLASEDASYISGAVIPVDG  241 (247)
T ss_dssp             -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHcCccccCCcCCEEEECC
Confidence             358899999999999987532   233566644

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.89  E-value=3.6e-22  Score=172.52  Aligned_cols=231  Identities=14%  Similarity=0.102  Sum_probs=155.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC----------cHHHHHHHhc-CCCCCCcEEEEecccCCCCCch
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD----------NKKKVKHLLE-LPKASTHLTLWKADLAEEGNFD   72 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~----------~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~   72 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+          +.+.++.... ......++..+.+|++|.+++.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            3689999999999999999999999999999998422          2233322211 1111257899999999999887


Q ss_pred             hhhC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccC
Q 040253           73 EPIR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        73 ~~~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~  136 (338)
                      ++++       ++|++||+||.....     ..+..+..+++|+.++.++++++..    .+...++|++||...+.   
T Consensus        90 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~---  166 (277)
T 3tsc_A           90 KVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK---  166 (277)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS---
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC---
Confidence            7664       699999999865422     2233456789999999999887543    22136899999987653   


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhc
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPI  213 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  213 (338)
                                         +......|+.+|.+.+.+.+.++.++   |+++++++||.+..+.................
T Consensus       167 -------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~  227 (277)
T 3tsc_A          167 -------------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDMVTAVGQAMETN  227 (277)
T ss_dssp             -------------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHHHHHHHHHHHTC
T ss_pred             -------------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchhhhhhhhccccc
Confidence                               11234589999999999999999885   89999999999987653211000000000000


Q ss_pred             ccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          214 TRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                      ......+.......+.+.+|+|+++++++....  . +..+++.+.
T Consensus       228 ~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG  273 (277)
T 3tsc_A          228 PQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQG  273 (277)
T ss_dssp             GGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             HHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCC
Confidence            000011111111258899999999999997543  2 345666543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.89  E-value=6.7e-23  Score=176.60  Aligned_cols=227  Identities=12%  Similarity=0.041  Sum_probs=159.3

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..|+||||||+  |+||.+++++|+++|++|++++|+....+..+.+....   +++.++.+|++|.+++.++++     
T Consensus        13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---GSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc---CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            46899999999  99999999999999999999999866555555443321   357899999999998887764     


Q ss_pred             --CccEEEEecccCCC----------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcC
Q 040253           77 --GCTGVFHLATPMDF----------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 --~~d~vi~~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                        ++|++||+||....          ...+.....+++|+.++.++++++...- +..++|++||...+.          
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  159 (271)
T 3ek2_A           90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER----------  159 (271)
T ss_dssp             CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred             cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc----------
Confidence              68999999986432          1223345688999999999999887652 135899999987653          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+..... . ............ ...
T Consensus       160 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~-~~~~~~~~~~~~-~~~  224 (271)
T 3ek2_A          160 ------------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGI-K-SFGKILDFVESN-SPL  224 (271)
T ss_dssp             ------------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCC-H-HHHHHHHHHHHH-STT
T ss_pred             ------------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcc-c-chHHHHHHHHhc-CCc
Confidence                        11245689999999999999998875   89999999999987653321 1 101111100011 111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe-cCCCCHHHH
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS-SHPATILEL  263 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~-~~~~t~~e~  263 (338)
                           .++...+|+|+++++++....  ..| .+++. +...++.++
T Consensus       225 -----~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~~~~~~  266 (271)
T 3ek2_A          225 -----KRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNAVVGGM  266 (271)
T ss_dssp             -----SSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGGBCCCC
T ss_pred             -----CCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeeeehhhh
Confidence                 457899999999999997532  234 56774 444444443

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.88  E-value=3.5e-22  Score=173.78  Aligned_cols=217  Identities=14%  Similarity=0.070  Sum_probs=154.0

Q ss_pred             CcEEEEeCCchh--hHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGF--IGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|++|||||+|+  ||.+++++|+++|++|++++|+....+....+....   .++.++.+|++|.+++.++++      
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL---GAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH---TCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            579999999998  999999999999999999999854333333332211   468899999999998887764      


Q ss_pred             -CccEEEEecccCC---------CCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMD---------FESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       ++|++||+||...         ....+.....+++|+.++.++++++...- ...++|++||...+.            
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~------------  175 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK------------  175 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS------------
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc------------
Confidence             7999999999653         11223345688999999999999886542 146999999987663            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-hhHHHhhhhcccCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHYP  221 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~  221 (338)
                                +......|+.+|.+.+.+.+.++.++   |+++++++||.+..+....... ........  ...  .. 
T Consensus       176 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~--~~~--p~-  240 (293)
T 3grk_A          176 ----------VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNE--YNA--PL-  240 (293)
T ss_dssp             ----------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHH--HHS--TT-
T ss_pred             ----------CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHH--hcC--CC-
Confidence                      11234589999999999999998875   8999999999998865332111 11111110  011  11 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                          .++...+|+|+++++++....  ..| .+++.+
T Consensus       241 ----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG  273 (293)
T 3grk_A          241 ----RRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADS  273 (293)
T ss_dssp             ----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCCCHHHHHHHHHHHcCccccCCcceEEEECC
Confidence                457889999999999987533  234 566644

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.88  E-value=1.9e-22  Score=173.46  Aligned_cols=206  Identities=14%  Similarity=0.092  Sum_probs=145.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|++|||||+|+||++++++|+++|++|++++|+.+..........     .++.++.+|++|.+++.++++       +
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           28 KKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----DDALCVPTDVTDPDSVRALFTATVEKFGR  102 (272)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----SCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999998765554433222     468999999999998887765       7


Q ss_pred             ccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhC----C-CccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           78 CTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNA----K-TVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        78 ~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      +|++||+||....      ...+..+..+++|+.++.++.+++...    + ...++|++||...+.             
T Consensus       103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-------------  169 (272)
T 4dyv_A          103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS-------------  169 (272)
T ss_dssp             CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS-------------
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC-------------
Confidence            9999999996432      112233578899999988888776432    2 136899999986653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+....... .    .      .......
T Consensus       170 ---------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~-~----~------~~~~~~~  229 (272)
T 4dyv_A          170 ---------PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQKMKA-G----V------PQADLSI  229 (272)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-----------------------------
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhhhcc-c----c------hhhhhcc
Confidence                     11245689999999999999998874   8999999999998764221100 0    0      0000000


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNAK  248 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~~  248 (338)
                      ...++.+++|+|+++++++..+...
T Consensus       230 ~~~~~~~pedvA~~v~fL~s~~~~~  254 (272)
T 4dyv_A          230 KVEPVMDVAHVASAVVYMASLPLDA  254 (272)
T ss_dssp             ------CHHHHHHHHHHHHHSCTTS
T ss_pred             cccCCCCHHHHHHHHHHHhCCCCcC
Confidence            1135889999999999999976653

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.88  E-value=1.5e-22  Score=169.23  Aligned_cols=203  Identities=14%  Similarity=0.078  Sum_probs=149.4

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---Ccc
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCT   79 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d   79 (338)
                      ..+|++|||||+|+||++++++|+++|++|++++|+..                      +|++|++++.++++   ++|
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----------------------~D~~~~~~v~~~~~~~g~id   61 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG----------------------LDISDEKSVYHYFETIGAFD   61 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT----------------------CCTTCHHHHHHHHHHHCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc----------------------cCCCCHHHHHHHHHHhCCCC
Confidence            45689999999999999999999999999999988642                      69999988887775   799


Q ss_pred             EEEEecccCC-C-----CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           80 GVFHLATPMD-F-----ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        80 ~vi~~a~~~~-~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      ++||+||... .     ...+..+..+++|+.++.++++++...- +..++|++||...+.                   
T Consensus        62 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------------------  122 (223)
T 3uce_A           62 HLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK-------------------  122 (223)
T ss_dssp             EEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS-------------------
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc-------------------
Confidence            9999999652 1     1122334678899999999999987653 134899999987663                   


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcC-ccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccH
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENN-IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHL  231 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  231 (338)
                         +..+...|+.+|...+.+.+.++.+++ +++++++||.+.++................... ....     .++.+.
T Consensus       123 ---~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~  193 (223)
T 3uce_A          123 ---VVANTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQS-HLPV-----GKVGEA  193 (223)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHH-HSTT-----CSCBCH
T ss_pred             ---CCCCchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhh-cCCC-----CCccCH
Confidence               112456899999999999999999875 999999999998875433221111111111101 1111     468899


Q ss_pred             HHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          232 DDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       232 ~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                      +|+|++++.+++.....| .+++.+
T Consensus       194 ~dvA~~~~~l~~~~~~tG~~i~vdg  218 (223)
T 3uce_A          194 SDIAMAYLFAIQNSYMTGTVIDVDG  218 (223)
T ss_dssp             HHHHHHHHHHHHCTTCCSCEEEEST
T ss_pred             HHHHHHHHHHccCCCCCCcEEEecC
Confidence            999999999998655445 566644

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.88  E-value=7.6e-22  Score=170.72  Aligned_cols=218  Identities=10%  Similarity=0.016  Sum_probs=156.3

Q ss_pred             CCcEEEEeCCchh--hHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGF--IGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|+|+||||+|+  ||.+++++|+++|++|++++|+. ..+..+.+....   +++.++.+|++|.+++.++++     
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEF---NPAAVLPCDVISDQEIKDLFVELGKV  100 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHGGG---CCSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHHHHhc---CCceEEEeecCCHHHHHHHHHHHHHH
Confidence            3589999999977  99999999999999999999987 333344333221   458899999999998877664     


Q ss_pred             --CccEEEEecccCCC----------CCCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCc
Q 040253           77 --GCTGVFHLATPMDF----------ESKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 --~~d~vi~~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                        ++|+|||+||....          ...+.....+++|+.++.++++++...-  ...++|++||...+.         
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~---------  171 (280)
T 3nrc_A          101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK---------  171 (280)
T ss_dssp             CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS---------
T ss_pred             cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc---------
Confidence              58999999996542          2223345678999999999998876431  146999999987663         


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAH  219 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  219 (338)
                                   +..+...|+.+|.+.+.+.+.++.+   .|+++++++||.+..+........  .......... ..
T Consensus       172 -------------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~--~~~~~~~~~~-~p  235 (280)
T 3nrc_A          172 -------------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNF--KKMLDYNAMV-SP  235 (280)
T ss_dssp             -------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTH--HHHHHHHHHH-ST
T ss_pred             -------------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcch--HHHHHHHHhc-CC
Confidence                         1124568999999999999998877   489999999999987653321110  0001100010 11


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      .     ..+...+|+|+++++++....  . +..+++.+
T Consensus       236 ~-----~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdg  269 (280)
T 3nrc_A          236 L-----KKNVDIMEVGNTVAFLCSDMATGITGEVVHVDA  269 (280)
T ss_dssp             T-----CSCCCHHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred             C-----CCCCCHHHHHHHHHHHhCcccCCcCCcEEEECC
Confidence            1     457889999999999997533  2 44566644

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.88  E-value=1.6e-22  Score=172.79  Aligned_cols=225  Identities=14%  Similarity=0.125  Sum_probs=144.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----CccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----GCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----~~d~   80 (338)
                      ||+|+||||+|+||++++++|+++|++|++++|+.+...            .  . +.+|++|.+++.++++    ++|+
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~--~-~~~Dl~~~~~v~~~~~~~~~~id~   65 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVI------------A--D-LSTAEGRKQAIADVLAKCSKGMDG   65 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEE------------C--C-TTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhc------------c--c-cccCCCCHHHHHHHHHHhCCCCCE
Confidence            478999999999999999999999999999999865421            0  1 6789999888888775    4699


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCC---CCcCCCCCCchh-h
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRK---PVYDETSWSDLD-F  152 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~---~~~~e~~~~~~~-~  152 (338)
                      |||+||....  ..+.+..+++|+.++.++++++.    +.+ ..++|++||...+.......   ..+.+.++.... .
T Consensus        66 lv~~Ag~~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (257)
T 1fjh_A           66 LVLCAGLGPQ--TKVLGNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAI  142 (257)
T ss_dssp             EEECCCCCTT--CSSHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHH
T ss_pred             EEECCCCCCC--cccHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEECChhhhccccccchhhhhhcccchhhhhhh
Confidence            9999996541  13466899999999999988875    334 57999999988773110000   000000000000 0


Q ss_pred             hh--hccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC-CCCCCCCCCC
Q 040253          153 VR--SVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN-EAHYPIIKQG  226 (338)
Q Consensus       153 ~~--~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  226 (338)
                      ..  .+..+...|+.+|.+.+.+++.++.+   +|+++++++||.+.++...........   ...... ...     ..
T Consensus       143 ~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~---~~~~~~~~~~-----~~  214 (257)
T 1fjh_A          143 VEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRY---GESIAKFVPP-----MG  214 (257)
T ss_dssp             HHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------------------------CCCS-----TT
T ss_pred             hhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhccchhH---HHHHHhcccc-----cC
Confidence            00  01124568999999999999988877   489999999999988753321010000   000000 001     13


Q ss_pred             ccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          227 QFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      .+++.+|+|++++.++..+.  ..| .+++.+
T Consensus       215 ~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdg  246 (257)
T 1fjh_A          215 RRAEPSEMASVIAFLMSPAASYVHGAQIVIDG  246 (257)
T ss_dssp             SCCCTHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             CCCCHHHHHHHHHHHhCchhcCCcCCEEEECC
Confidence            58899999999999997642  234 455644

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.88  E-value=5.2e-22  Score=170.61  Aligned_cols=216  Identities=17%  Similarity=0.183  Sum_probs=154.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ++|+|+||||+|+||++++++|+++|++|+++.++. ...... +.+...   ..++.++.+|++|.+++.++++     
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN---GGNGRLLSFDVANREQCREVLEHEIAQ  101 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            457899999999999999999999999997766543 332222 222221   2578999999999998887765     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH-----hCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK-----NAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|+|||+||.....     ..+..+..+++|+.++.++++++.     +.+ ..++|++||...+.           
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~-----------  169 (267)
T 4iiu_A          102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ-GGRIITLSSVSGVM-----------  169 (267)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCHHHHH-----------
T ss_pred             hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEcchHhcc-----------
Confidence              799999999865421     223345788999999999988763     334 57999999987663           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+.++..... ........    .. ... 
T Consensus       170 -----------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~----~~-~p~-  231 (267)
T 4iiu_A          170 -----------GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME-ESALKEAM----SM-IPM-  231 (267)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC-HHHHHHHH----HT-CTT-
T ss_pred             -----------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc-HHHHHHHH----hc-CCC-
Confidence                       11245689999999999998888775   89999999999988764322 11111111    11 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEecC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSSH  256 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~~  256 (338)
                          .++.+.+|+|+++++++....  . +..+++.++
T Consensus       232 ----~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG  265 (267)
T 4iiu_A          232 ----KRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG  265 (267)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             ----CCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence                458899999999999997533  2 445666543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.88  E-value=1.5e-21  Score=169.17  Aligned_cols=220  Identities=15%  Similarity=0.099  Sum_probs=154.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+... .+.. +.+...   ..++.++.+|++|.+++.++++     
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN---GSDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999998643 2222 222211   1468899999999988777653     


Q ss_pred             --CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 --GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                        ++|+|||+||.....     ..+..+..+++|+.++.++++++...  + ..++|++||...+.  .           
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~-~g~iv~isS~~~~~--~-----------  170 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEI-GGRLILMGSITGQA--K-----------  170 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCT-TCEEEEECCGGGTC--S-----------
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc-CCeEEEEechhhcc--C-----------
Confidence              689999999965421     12334567999999999999988765  4 57999999976542  1           


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC----------CChhHHHhhhhcc
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS----------MPPSLITALSPIT  214 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~----------~~~~~~~~~~~~~  214 (338)
                              ...+...|+.+|...+.+.+.++.++   |+++++++||.+.++.....          ..........  .
T Consensus       171 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--~  240 (283)
T 1g0o_A          171 --------AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYA--A  240 (283)
T ss_dssp             --------SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHH--H
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHH--h
Confidence                    00125689999999999999988764   89999999999987631100          0000000000  0


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ......     .++.+.+|+|+++++++....  ..| .+++.+
T Consensus       241 ~~~~p~-----~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdg  279 (283)
T 1g0o_A          241 VQWSPL-----RRVGLPIDIARVVCFLASNDGGWVTGKVIGIDG  279 (283)
T ss_dssp             HHSCTT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             hcCCCC-----CCCcCHHHHHHHHHHHhCccccCcCCCEEEeCC
Confidence            001111     358899999999999997543  234 556644

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.88  E-value=1.8e-21  Score=167.46  Aligned_cols=218  Identities=17%  Similarity=0.100  Sum_probs=155.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.. ..........  ....++.++.+|++|.+++.++++      
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIE--QAGGRAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--hcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999877653 2222222111  112578999999999998887765      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++... ....++|++||.....  .             
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~--~-------------  172 (271)
T 3v2g_A          108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL--V-------------  172 (271)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC--C-------------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc--C-------------
Confidence             799999999865421     22334578899999999999988654 1246899999864331  0             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                            +.++...|+.+|.+.+.+.+.++.++   |+++++++||.+.++...... ........   .  ...     .
T Consensus       173 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~-~~~~~~~~---~--~~~-----~  235 (271)
T 3v2g_A          173 ------PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADG-DHAEAQRE---R--IAT-----G  235 (271)
T ss_dssp             ------CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSC-SSHHHHHH---T--CTT-----S
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccc-hhHHHHHh---c--CCC-----C
Confidence                  11245689999999999999998875   899999999999987643211 11111111   1  111     4


Q ss_pred             ccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          227 QFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      ++...+|+|+++++++....  . +..+++.+
T Consensus       236 r~~~pedvA~~v~fL~s~~~~~itG~~i~vdG  267 (271)
T 3v2g_A          236 SYGEPQDIAGLVAWLAGPQGKFVTGASLTIDG  267 (271)
T ss_dssp             SCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             CCCCHHHHHHHHHHHhCcccCCccCCEEEeCc
Confidence            57899999999999986432  2 34566644

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.88  E-value=4.2e-22  Score=171.39  Aligned_cols=224  Identities=14%  Similarity=0.119  Sum_probs=154.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||.+++++|+++|++|++++|+++....+....      .++.++.+|++|.+++.++++       +
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRRFGR   82 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------cCCeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            579999999999999999999999999999999865544433211      347899999999998887764       7


Q ss_pred             ccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||.....      ..+..+..+++|+.++.++++++...   + ..++|++||...+.  .            
T Consensus        83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~--~------------  147 (270)
T 1yde_A           83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAI--G------------  147 (270)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHH--C------------
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCEEEEEcCccccC--C------------
Confidence            89999999864311      11223567899999999998887532   2 36999999976542  1            


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCC---CCChhHHHhhhhcccCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTS---SMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                              ......|+.+|...+.+.+.++.+   +|+++++++||.++++....   ............. . ..++  
T Consensus       148 --------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~-~-~~p~--  215 (270)
T 1yde_A          148 --------QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGM-L-AQPL--  215 (270)
T ss_dssp             --------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHH-H-TSTT--
T ss_pred             --------CCCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHh-h-cCCC--
Confidence                    113458999999999999999876   48999999999999874210   0000000000000 0 1111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCC-CC-CCceEEec-CCCCHHHHH
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHP-NA-KGRYICSS-HPATILELA  264 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~-~~-~~~~~~~~-~~~t~~e~~  264 (338)
                         .++...+|+|+++++++... .. +..+.+.+ ..+...+.+
T Consensus       216 ---~r~~~p~dva~~v~~L~s~~~~itG~~i~vdGG~~~~~~~~~  257 (270)
T 1yde_A          216 ---GRMGQPAEVGAAAVFLASEANFCTGIELLVTGGAELGYGCKA  257 (270)
T ss_dssp             ---SSCBCHHHHHHHHHHHHHHCTTCCSCEEEESTTTTSCC----
T ss_pred             ---CCCcCHHHHHHHHHHHcccCCCcCCCEEEECCCeecccCcCc
Confidence               35789999999999988642 22 33566643 445444433

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=4e-22  Score=169.52  Aligned_cols=202  Identities=18%  Similarity=0.135  Sum_probs=147.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhc-CCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+.......... ......++.++.+|++|.+++.++++      
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999998766555433221 11111468899999999988877664      


Q ss_pred             -CccEEEEecccCCCCCC----CccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 -GCTGVFHLATPMDFESK----DPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                       ++|++||+||.......    +..+..+++|+.++..+++++.    +.+ ..++|++||...+.              
T Consensus        86 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  150 (250)
T 3nyw_A           86 GAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVASRAAKY--------------  150 (250)
T ss_dssp             CCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC-------------------
T ss_pred             CCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEccHHhcC--------------
Confidence             69999999996542211    2234678999999999988773    334 57999999976653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+..        .. .    ....     .
T Consensus       151 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~--------~~-~----~~~~-----~  204 (250)
T 3nyw_A          151 --------GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDMA--------KK-A----GTPF-----K  204 (250)
T ss_dssp             ----------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHH--------HH-T----TCCS-----C
T ss_pred             --------CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCchh--------hh-c----CCCc-----c
Confidence                    11235589999999999999998875   89999999998865321        00 0    0110     1


Q ss_pred             CCccccHHHHHHHHHHhhcCCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ...+++.+|+|++++.++..+.
T Consensus       205 ~~~~~~p~dva~~v~~l~s~~~  226 (250)
T 3nyw_A          205 DEEMIQPDDLLNTIRCLLNLSE  226 (250)
T ss_dssp             GGGSBCHHHHHHHHHHHHTSCT
T ss_pred             cccCCCHHHHHHHHHHHHcCCC
Confidence            1358999999999999998754

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.88  E-value=1.6e-22  Score=169.87  Aligned_cols=197  Identities=17%  Similarity=0.160  Sum_probs=143.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC----ccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG----CTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~----~d~   80 (338)
                      ||+||||||+|+||.+++++|+++|++|++++|+.+.........     ..++.++.+|++|.+++.++++.    .|+
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~   75 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL-----SNNVGYRARDLASHQEVEQLFEQLDSIPST   75 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC-----SSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-----hhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence            578999999999999999999999999999999876555443322     15688999999999998888764    499


Q ss_pred             EEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCchhhh
Q 040253           81 VFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFV  153 (338)
Q Consensus        81 vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~  153 (338)
                      |||+||.....     ..+..+..+++|+.++.++++++...-  ...++|++||...+.                    
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~--------------------  135 (230)
T 3guy_A           76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ--------------------  135 (230)
T ss_dssp             EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS--------------------
T ss_pred             EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC--------------------
Confidence            99999864421     122334678999999999988875431  123899999987663                    


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcccc
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVH  230 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  230 (338)
                        +..+...|+.+|.+.+.+.+.++.++   |++++.++||.+..+.....             .....     ...+.+
T Consensus       136 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-------------~~~~~-----~~~~~~  195 (230)
T 3guy_A          136 --PKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWETS-------------GKSLD-----TSSFMS  195 (230)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC----------------------------------CCC
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHhc-------------CCCCC-----cccCCC
Confidence              11245689999999999999999886   79999999998876532110             00000     146889


Q ss_pred             HHHHHHHHHHhhcCCC
Q 040253          231 LDDLCSAHIFLFEHPN  246 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~  246 (338)
                      .+|+|++++.++.++.
T Consensus       196 ~~dvA~~i~~l~~~~~  211 (230)
T 3guy_A          196 AEDAALMIHGALANIG  211 (230)
T ss_dssp             HHHHHHHHHHHCCEET
T ss_pred             HHHHHHHHHHHHhCcC
Confidence            9999999999998653

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.88  E-value=3.6e-22  Score=173.08  Aligned_cols=217  Identities=18%  Similarity=0.171  Sum_probs=154.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC---eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY---AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      +|++|||||+|+||.+++++|+++|+   +|++++|+.+....+...........++.++.+|++|.+++.++++     
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  112 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQE  112 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGG
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            57999999999999999999999987   9999999876655544332211112578999999999998887764     


Q ss_pred             --CccEEEEecccCC-C-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMD-F-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~-~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|++||+||... .     ...+..+..+++|+.++.++++++    ++.+ ..++|++||...+.           
T Consensus       113 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~-----------  180 (287)
T 3rku_A          113 FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGSIAGRD-----------  180 (287)
T ss_dssp             GCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS-----------
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECChhhcC-----------
Confidence              6899999999643 1     112234578899999999999887    3344 57999999986653           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 +......|+.+|.+.+.+.+.++.++   |+++++++||.+..+................. .      
T Consensus       181 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~-~------  242 (287)
T 3rku_A          181 -----------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQAKNVY-K------  242 (287)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHHHHHH-T------
T ss_pred             -----------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHHHHhh-c------
Confidence                       11245689999999999999999884   89999999999987531100000000000000 0      


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCC---CCceEEe
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNA---KGRYICS  254 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~  254 (338)
                         ....+..+|+|+++++++..+..   ++.+++.
T Consensus       243 ---~~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~  275 (287)
T 3rku_A          243 ---DTTPLMADDVADLIVYATSRKQNTVIADTLIFP  275 (287)
T ss_dssp             ---TSCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEE
T ss_pred             ---ccCCCCHHHHHHHHHHHhCCCCCeEecceEEee
Confidence               02245899999999999987653   3345554

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.88  E-value=9.3e-23  Score=176.15  Aligned_cols=219  Identities=11%  Similarity=0.043  Sum_probs=155.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+........... ....++.++.+|++|.+++.++++       
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG-ATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH-HHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-hcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            358999999999999999999999999999999986654333221110 001578999999999988877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+..+..+++|+.++.++.+++..    .+ ..++|++||...+.              
T Consensus       105 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  169 (277)
T 4fc7_A          105 RIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH-GGVIVNITATLGNR--------------  169 (277)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCSHHHH--------------
T ss_pred             CCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhCC--------------
Confidence            79999999985432     12233456889999999999988743    23 46999999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC--CChhHHHhhhhcccCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS--MPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~  222 (338)
                              +......|+.+|.+.+.+.+.++.++   |+++++++||.+.++.....  .........   .. ....  
T Consensus       170 --------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~---~~-~~p~--  235 (277)
T 4fc7_A          170 --------GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTK---VT-ASPL--  235 (277)
T ss_dssp             --------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHH---HH-TSTT--
T ss_pred             --------CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHH---hc-cCCC--
Confidence                    11234589999999999999998875   89999999999987631100  001110000   01 1111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                         .++...+|+|+++++++....  . +..+++.+
T Consensus       236 ---~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdG  268 (277)
T 4fc7_A          236 ---QRLGNKTEIAHSVLYLASPLASYVTGAVLVADG  268 (277)
T ss_dssp             ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ---CCCcCHHHHHHHHHHHcCCccCCcCCCEEEECC
Confidence               468899999999999997433  2 34566644

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.88  E-value=1.8e-22  Score=173.98  Aligned_cols=221  Identities=17%  Similarity=0.115  Sum_probs=156.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~   77 (338)
                      .+|+++||||+|+||.+++++|+++|++|++++|+.+...........  ...++..+.+|++|.+++.++++      +
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA--SGGTAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH--TTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh--cCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            468999999999999999999999999999999988765554332211  12578999999999998887765      7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.               
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~---------------  173 (275)
T 4imr_A          110 VDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK-WGRVVSIGSINQLR---------------  173 (275)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS---------------
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHhCC---------------
Confidence            89999999864321     223345678999999999988873    334 57999999987653               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+......... ..............     
T Consensus       174 -------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~-~~~~~~~~~~~~p~-----  240 (275)
T 4imr_A          174 -------PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQD-PEGWDEYVRTLNWM-----  240 (275)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHC-HHHHHHHHHHHSTT-----
T ss_pred             -------CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccC-hHHHHHHHhhcCcc-----
Confidence                   11234579999999999999998886   899999999999765311000000 00000000000011     


Q ss_pred             CccccHHHHHHHHHHhhcCCCC---CCceEEec
Q 040253          226 GQFVHLDDLCSAHIFLFEHPNA---KGRYICSS  255 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~~---~~~~~~~~  255 (338)
                      .++...+|+|+++++++.....   +..+++.+
T Consensus       241 ~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG  273 (275)
T 4imr_A          241 GRAGRPEEMVGAALFLASEACSFMTGETIFLTG  273 (275)
T ss_dssp             CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             CCCcCHHHHHHHHHHHcCcccCCCCCCEEEeCC
Confidence            3578899999999999875432   33556644

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.88  E-value=5.3e-22  Score=169.84  Aligned_cols=208  Identities=17%  Similarity=0.155  Sum_probs=147.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++|++|||||+|+||++++++|+++|++|++++|+.+............  ..++..+.+|++|.+++.++++       
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA--GGTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT--TCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999999999876655543322211  2578899999999988877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||.....     ..+..+..+++|+.++..+.+++..    .+ ..++|++||...+.              
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~~--------------  145 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGSIGALS--------------  145 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC--------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcCHHHcc--------------
Confidence            799999999865421     1233456789999999988877643    34 57999999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                              +......|+.+|...+.+.+.++.+. |+++++++||.+..+..........          ..... ....
T Consensus       146 --------~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~~~~~~~----------~~~~~-~~~~  206 (264)
T 3tfo_A          146 --------VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGTITHEET----------MAAMD-TYRA  206 (264)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---------------------------------
T ss_pred             --------cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCcccccccchhH----------HHHHH-hhhc
Confidence                    11234589999999999999999886 8999999999987654221100000          00000 0001


Q ss_pred             ccccHHHHHHHHHHhhcCCCC
Q 040253          227 QFVHLDDLCSAHIFLFEHPNA  247 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~~  247 (338)
                      .+...+|+|++++.++..+..
T Consensus       207 ~~~~pedvA~~v~~l~s~~~~  227 (264)
T 3tfo_A          207 IALQPADIARAVRQVIEAPQS  227 (264)
T ss_dssp             -CCCHHHHHHHHHHHHHSCTT
T ss_pred             cCCCHHHHHHHHHHHhcCCcc
Confidence            257899999999999988664

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.88  E-value=6.6e-22  Score=171.28  Aligned_cols=215  Identities=16%  Similarity=0.158  Sum_probs=154.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------Cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------GC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~   78 (338)
                      +|++|||||+|+||.+++++|+++|++|++++|+.+....+.....     .++.++.+|++|.+++.++++      ++
T Consensus        30 ~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~v~~~~~~~~~~~~i  104 (281)
T 3ppi_A           30 GASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG-----NRAEFVSTNVTSEDSVLAAIEAANQLGRL  104 (281)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHTTSSEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999998766555443331     578999999999998877664      68


Q ss_pred             cEEEEecccCC-CC----------CCCccchhhhhhhHHHHHHHHHHHhC---------CCccEEEEecCceeeeccCCC
Q 040253           79 TGVFHLATPMD-FE----------SKDPENEVIRPTINGMVSIMRACKNA---------KTVRRLVFTSSAGTLDVEEHR  138 (338)
Q Consensus        79 d~vi~~a~~~~-~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~~v~~Ss~~v~~~~~~~  138 (338)
                      |++||+++... ..          ..+..+..+++|+.++.++++++...         +...++|++||...+.     
T Consensus       105 d~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----  179 (281)
T 3ppi_A          105 RYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE-----  179 (281)
T ss_dssp             EEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS-----
T ss_pred             CeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC-----
Confidence            99999954322 11          11113578899999999998877521         1146899999987663     


Q ss_pred             CCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhccc
Q 040253          139 KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITR  215 (338)
Q Consensus       139 ~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  215 (338)
                                       +..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+..... ........   ..
T Consensus       180 -----------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-~~~~~~~~---~~  238 (281)
T 3ppi_A          180 -----------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV-GEEALAKF---AA  238 (281)
T ss_dssp             -----------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT-CHHHHHHH---HH
T ss_pred             -----------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc-cHHHHHHH---Hh
Confidence                             11245689999999999999988875   89999999999976532211 11111111   11


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCC-ceEEec
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKG-RYICSS  255 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~~  255 (338)
                      .....     .++.+.+|+|+++++++......| .+++.+
T Consensus       239 ~~~~~-----~~~~~pedvA~~v~~l~s~~~~tG~~i~vdG  274 (281)
T 3ppi_A          239 NIPFP-----KRLGTPDEFADAAAFLLTNGYINGEVMRLDG  274 (281)
T ss_dssp             TCCSS-----SSCBCHHHHHHHHHHHHHCSSCCSCEEEEST
T ss_pred             cCCCC-----CCCCCHHHHHHHHHHHHcCCCcCCcEEEECC
Confidence            11110     458899999999999998755555 456643

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.88  E-value=1.8e-22  Score=172.94  Aligned_cols=222  Identities=10%  Similarity=0.102  Sum_probs=151.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhc-CCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|.||.+++++|+++|++|++++|...+.+..+.+.. ......++.++.+|++|.+++.++++      
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   89 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF   89 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999999999999887655444433221 11123578999999999998887764      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       ++|++||+||.....     ..+..+..+++|+.++..+++++...- ...++|++||...+.                
T Consensus        90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~----------------  153 (262)
T 3ksu_A           90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA----------------  153 (262)
T ss_dssp             CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH----------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc----------------
Confidence             799999999965421     122344678899999999999987651 156899999987764                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                            +......|+.+|.+.+.+.+.++.++   |++++++.||.+..+...........   . ......     ...
T Consensus       154 ------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~---~-~~~~~~-----~~~  218 (262)
T 3ksu_A          154 ------YTGFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQETKEST---A-FHKSQA-----MGN  218 (262)
T ss_dssp             ------HHCCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTCC---------------------CCC
T ss_pred             ------CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccccCchHHH---H-HHHhcC-----ccc
Confidence                  11234579999999999999999886   89999999998865431110000000   0 000000     114


Q ss_pred             ccccHHHHHHHHHHhhcCCC-CCC-ceEEecC
Q 040253          227 QFVHLDDLCSAHIFLFEHPN-AKG-RYICSSH  256 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~-~~~-~~~~~~~  256 (338)
                      ++...+|+|+++++++.... ..| .+++.+.
T Consensus       219 r~~~pedvA~~v~~L~s~~~~itG~~i~vdGg  250 (262)
T 3ksu_A          219 QLTKIEDIAPIIKFLTTDGWWINGQTIFANGG  250 (262)
T ss_dssp             CSCCGGGTHHHHHHHHTTTTTCCSCEEEESTT
T ss_pred             CCCCHHHHHHHHHHHcCCCCCccCCEEEECCC
Confidence            58899999999999987521 234 5566554

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.2e-22  Score=169.88  Aligned_cols=213  Identities=16%  Similarity=0.135  Sum_probs=152.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+++||||+|+||++++++|++.|  +.|++++|+.+....+.....     .++.++.+|++|.+++.++++      
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGH   76 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            5899999999999999999999885  789888998765554443221     478999999999998887764      


Q ss_pred             -CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       ++|++||+||....      ...+..+..+++|+.++.++.+++    ++.+  .++|++||...+.            
T Consensus        77 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~------------  142 (254)
T 3kzv_A           77 GKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNM------------  142 (254)
T ss_dssp             SCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCC------------
T ss_pred             CCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhcc------------
Confidence             78999999996431      111233568899999999998887    3333  6899999987663            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCCCC--------hhHHHhhhhcccC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSSMP--------PSLITALSPITRN  216 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~--------~~~~~~~~~~~~~  216 (338)
                                +..+...|+.+|...+.+.+.++.++ ++++++++||.+..+.......        ........   ..
T Consensus       143 ----------~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---~~  209 (254)
T 3kzv_A          143 ----------YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFR---GL  209 (254)
T ss_dssp             ----------SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHH---HH
T ss_pred             ----------CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHH---HH
Confidence                      11245689999999999999999886 8999999999998875432111        11111110   00


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCC---CCC-ceEEec
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKG-RYICSS  255 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~-~~~~~~  255 (338)
                       ...     .++.+.+|+|+++++++....   ..| .+++.+
T Consensus       210 -~~~-----~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg  246 (254)
T 3kzv_A          210 -KEN-----NQLLDSSVPATVYAKLALHGIPDGVNGQYLSYND  246 (254)
T ss_dssp             -HTT-----C----CHHHHHHHHHHHHHCCCGGGTTCEEETTC
T ss_pred             -Hhc-----CCcCCcccHHHHHHHHHhhcccCCCCccEEEecC
Confidence             011     468899999999999987653   344 455544

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.88  E-value=7.5e-22  Score=167.63  Aligned_cols=202  Identities=19%  Similarity=0.213  Sum_probs=144.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |+++||||+|+||++++++|+++|++|++++|+.+..........     .++.++.+|++|.+++.++++       ++
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   75 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWCNI   75 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999999999999999998655444433221     368899999999988877764       68


Q ss_pred             cEEEEecccCC-C-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           79 TGVFHLATPMD-F-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        79 d~vi~~a~~~~-~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      |++||+||... .     ...+..+..+++|+.++.++.+++.    +.+ ..++|++||...+.               
T Consensus        76 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~---------------  139 (248)
T 3asu_A           76 DILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGSTAGSW---------------  139 (248)
T ss_dssp             CEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS---------------
T ss_pred             CEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEccchhcc---------------
Confidence            99999998642 1     1122345688999999998888775    334 57999999986653               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeC-CCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVG-PFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                             +..+...|+.+|...+.+.+.++.+.   |+++++++||.+.| +......... ....    .  ..+   .
T Consensus       140 -------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~~~~~-~~~~----~--~~~---~  202 (248)
T 3asu_A          140 -------PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-DGKA----E--KTY---Q  202 (248)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------
T ss_pred             -------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhcccCc-hHHH----H--HHH---h
Confidence                   11234589999999999999998875   89999999999984 4321100000 0000    0  000   0


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...++..+|+|+++++++..+
T Consensus       203 ~~~~~~p~dvA~~v~~l~s~~  223 (248)
T 3asu_A          203 NTVALTPEDVSEAVWWVSTLP  223 (248)
T ss_dssp             --CCBCHHHHHHHHHHHHHSC
T ss_pred             ccCCCCHHHHHHHHHHHhcCC
Confidence            123579999999999999764

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.88  E-value=1e-21  Score=166.76  Aligned_cols=210  Identities=17%  Similarity=0.146  Sum_probs=149.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++|+++||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.++++       
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA--AGAKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            358999999999999999999999999999999986554443322111  12468999999999988877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      ++|++||+||.....     ..+..+..+++|+.++.++.+++...-  ...++|++||...+.  .             
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~-------------  148 (247)
T 2jah_A           84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV--N-------------  148 (247)
T ss_dssp             CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTC--C-------------
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcC--C-------------
Confidence            799999999864321     112234678999999999988875431  016999999986653  1             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                             ..+...|+.+|...+.+.+.++.+.   |+++++++||.+..+...............   ..    +  +..
T Consensus       149 -------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~---~~----~--~~~  212 (247)
T 2jah_A          149 -------VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITHTATKEMYE---QR----I--SQI  212 (247)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCCHHHHHHHH---HH----T--TTS
T ss_pred             -------CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccchhhHHHHH---hc----c--ccc
Confidence                   1234589999999999999888764   899999999999876432111111111111   10    0  112


Q ss_pred             ccccHHHHHHHHHHhhcCCC
Q 040253          227 QFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~~~  246 (338)
                      .++..+|+|++++.++..+.
T Consensus       213 ~~~~pedvA~~v~~l~s~~~  232 (247)
T 2jah_A          213 RKLQAQDIAEAVRYAVTAPH  232 (247)
T ss_dssp             CCBCHHHHHHHHHHHHHSCT
T ss_pred             CCCCHHHHHHHHHHHhCCCc
Confidence            25899999999999997643

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.88  E-value=2.4e-22  Score=171.04  Aligned_cols=196  Identities=11%  Similarity=0.077  Sum_probs=147.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      |+|+||||||+|+||++++++|+++|++|++++|+.....              -..+.+|++|.+++.++++       
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~d~~d~~~v~~~~~~~~~~~g   86 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA--------------DHSFTIKDSGEEEIKSVIEKINSKSI   86 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS--------------SEEEECSCSSHHHHHHHHHHHHTTTC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--------------ccceEEEeCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999999999999999876431              2467889999888877664       


Q ss_pred             CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      ++|+|||+||.....      ..+..+..+++|+.++.++++++...- ...++|++||...+.                
T Consensus        87 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~----------------  150 (251)
T 3orf_A           87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN----------------  150 (251)
T ss_dssp             CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS----------------
T ss_pred             CCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc----------------
Confidence            579999999964321      122345678899999999999887643 135899999987663                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE-----NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                            +..+...|+.+|.+.+.+++.++.+     .|+++++++||.+.++..        ....    .. .     .
T Consensus       151 ------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~--------~~~~----~~-~-----~  206 (251)
T 3orf_A          151 ------RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTN--------RKYM----SD-A-----N  206 (251)
T ss_dssp             ------CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHH--------HHHC----TT-S-----C
T ss_pred             ------CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcch--------hhhc----cc-c-----c
Confidence                  1124568999999999999999988     479999999998876431        0000    11 0     1


Q ss_pred             CCccccHHHHHHHHHHhhcC---CCCCC-ceEE
Q 040253          225 QGQFVHLDDLCSAHIFLFEH---PNAKG-RYIC  253 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~---~~~~~-~~~~  253 (338)
                      ..++++.+|+|++++.++..   ....| .+++
T Consensus       207 ~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v  239 (251)
T 3orf_A          207 FDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKF  239 (251)
T ss_dssp             GGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEE
T ss_pred             ccccCCHHHHHHHHHHHhcCccccCCcceEEEE
Confidence            14588999999999999987   22334 5555

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.88  E-value=1.3e-21  Score=164.97  Aligned_cols=201  Identities=22%  Similarity=0.238  Sum_probs=147.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|+++||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|++++.++++       +
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ-EQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-hcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999999999999999987655443322110 012578999999999998887775       7


Q ss_pred             ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           78 CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        78 ~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      +|++||+||.....     ..+..+..+++|+.++.++++++...   + ..++|++||...+.                
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~ii~~sS~~~~~----------------  143 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT-GGLALVTTSDVSAR----------------  143 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGGGSS----------------
T ss_pred             CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcEEEEecchhcc----------------
Confidence            89999999965422     22334568899999999999887542   2 35677777765442                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcc
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF  228 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                            ..+....|+.+|.+.+.+.+.+..+. ++++++++||.+..+......            ..      .....+
T Consensus       144 ------~~~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~------------~~------~~~~~~  199 (235)
T 3l77_A          144 ------LIPYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP------------GK------PKEKGY  199 (235)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS------------CC------CGGGTC
T ss_pred             ------cCCCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC------------Cc------ccccCC
Confidence                  11134589999999999999885554 899999999988765422110            00      001257


Q ss_pred             ccHHHHHHHHHHhhcCCCC
Q 040253          229 VHLDDLCSAHIFLFEHPNA  247 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~~  247 (338)
                      +..+|+|++++.++..+..
T Consensus       200 ~~p~dva~~v~~l~~~~~~  218 (235)
T 3l77_A          200 LKPDEIAEAVRCLLKLPKD  218 (235)
T ss_dssp             BCHHHHHHHHHHHHTSCTT
T ss_pred             CCHHHHHHHHHHHHcCCCC
Confidence            8999999999999987654

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.88  E-value=4e-22  Score=170.78  Aligned_cols=217  Identities=20%  Similarity=0.227  Sum_probs=155.3

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |+. .+|+++||||+|+||.+++++|+++|++|++++|+.+........  ..   .++.++.+|++|.+++.++++   
T Consensus         1 m~~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~--~~---~~~~~~~~D~~~~~~v~~~~~~~~   75 (263)
T 2a4k_A            1 MGRLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA--LE---AEAIAVVADVSDPKAVEAVFAEAL   75 (263)
T ss_dssp             -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT--CC---SSEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--hc---CceEEEEcCCCCHHHHHHHHHHHH
Confidence            543 468999999999999999999999999999999986554433221  11   468899999999988877664   


Q ss_pred             ----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 ----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                          ++|++||+||.....     ..+..+..+++|+.++.++++++...- ...++|++||...++ .           
T Consensus        76 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~-~-----------  143 (263)
T 2a4k_A           76 EEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-A-----------  143 (263)
T ss_dssp             HHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-H-----------
T ss_pred             HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC-C-----------
Confidence                589999999865421     112234678899999999999886542 136999999986652 0           


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                 .+...|+.+|...+.+.+.++.+.   |+++++++||.+.++.... .........   ... ...   
T Consensus       144 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~-~~~~~~~~~---~~~-~p~---  204 (263)
T 2a4k_A          144 -----------FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG-LPPWAWEQE---VGA-SPL---  204 (263)
T ss_dssp             -----------HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT-SCHHHHHHH---HHT-STT---
T ss_pred             -----------CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhh-cCHHHHHHH---Hhc-CCC---
Confidence                       123489999999999999888764   8999999999998875332 111111111   011 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                        ..+.+.+|+|+++++++....  ..| .+++.+
T Consensus       205 --~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdg  237 (263)
T 2a4k_A          205 --GRAGRPEEVAQAALFLLSEESAYITGQALYVDG  237 (263)
T ss_dssp             --CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             --CCCcCHHHHHHHHHHHhCccccCCcCCEEEECC
Confidence              358899999999999987543  234 556644

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.87  E-value=2.3e-21  Score=170.60  Aligned_cols=228  Identities=15%  Similarity=0.111  Sum_probs=154.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC---------cHHHHHHHhc-CCCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD---------NKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+..         ..+.++.... ......++.++.+|++|.+++.+
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            3589999999999999999999999999999988632         1222222111 11112578999999999998887


Q ss_pred             hhC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCC
Q 040253           74 PIR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEH  137 (338)
Q Consensus        74 ~~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~  137 (338)
                      +++       ++|++||+||.....     ..+..+..+++|+.++.++++++..    .+...+||++||...+.    
T Consensus       125 ~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~----  200 (317)
T 3oec_A          125 VVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR----  200 (317)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS----
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC----
Confidence            764       799999999965421     1233456789999999998887743    22246899999987663    


Q ss_pred             CCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcc
Q 040253          138 RKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPIT  214 (338)
Q Consensus       138 ~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  214 (338)
                                        +......|+.+|.+.+.+.+.++.++   |+++++++||.+.++.....  ...........
T Consensus       201 ------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~  260 (317)
T 3oec_A          201 ------------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNE--KLLKMFLPHLE  260 (317)
T ss_dssp             ------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCH--HHHHHHCTTCS
T ss_pred             ------------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccch--hhhhhhhhhcc
Confidence                              11234589999999999999999885   89999999999987642110  00000000000


Q ss_pred             cCC-----C--CCCCCCCCccccHHHHHHHHHHhhcCCC---CCCceEEec
Q 040253          215 RNE-----A--HYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKGRYICSS  255 (338)
Q Consensus       215 ~~~-----~--~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~~~~~~~  255 (338)
                      ...     .  ........++++.+|+|+++++++....   .+..+++.+
T Consensus       261 ~~~~~~~~~~~~~~~~~p~~~~~pedvA~av~fL~s~~a~~itG~~i~vdG  311 (317)
T 3oec_A          261 NPTREDAAELFSQLTLLPIPWVEPEDVSNAVAWLASDEARYIHGAAIPVDG  311 (317)
T ss_dssp             SCCHHHHHHHHTTTCSSSSSSBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             ccchhHHHHHHhhhccCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECc
Confidence            000     0  0000001468999999999999986543   244567754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.87  E-value=1.1e-21  Score=169.67  Aligned_cols=222  Identities=15%  Similarity=0.176  Sum_probs=155.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|++|||||+|+||.+++++|+++|++|++++|+.+....+....     ..++.++.+|++|.+++.++++    
T Consensus         1 M~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~   75 (281)
T 3zv4_A            1 MKLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQKRAAERCLA   75 (281)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            6667899999999999999999999999999999999876555443322     1578999999999988777654    


Q ss_pred             ---CccEEEEecccCCCCC------CC----ccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCC
Q 040253           77 ---GCTGVFHLATPMDFES------KD----PENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~~------~~----~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                         ++|++||+||......      .+    ..+..+++|+.++.++++++...-  ...++|++||...+.        
T Consensus        76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------  147 (281)
T 3zv4_A           76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY--------  147 (281)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS--------
T ss_pred             hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc--------
Confidence               6899999998643211      01    134577899999999988875431  125899999986653        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHH------hhhhc
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLIT------ALSPI  213 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~------~~~~~  213 (338)
                                    +..+...|+.+|.+.+.+.+.++.++  +++++++.||.+..+............      .....
T Consensus       148 --------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~  213 (281)
T 3zv4_A          148 --------------PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADML  213 (281)
T ss_dssp             --------------SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHH
T ss_pred             --------------CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHH
Confidence                          11234589999999999999999886  499999999999876432210000000      00000


Q ss_pred             ccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC---CCC-ceEEec
Q 040253          214 TRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN---AKG-RYICSS  255 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~---~~~-~~~~~~  255 (338)
                       ......     .++...+|+|+++++++..+.   ..| .+++.+
T Consensus       214 -~~~~p~-----~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdG  253 (281)
T 3zv4_A          214 -KSVLPI-----GRMPALEEYTGAYVFFATRGDSLPATGALLNYDG  253 (281)
T ss_dssp             -HHTCTT-----SSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESS
T ss_pred             -HhcCCC-----CCCCCHHHHHHHHHHhhcccccccccCcEEEECC
Confidence             011111     468899999999999997332   234 556644

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.87  E-value=5e-21  Score=166.17  Aligned_cols=226  Identities=16%  Similarity=0.140  Sum_probs=155.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-------------cHHHHHHHhc-CCCCCCcEEEEecccCCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-------------NKKKVKHLLE-LPKASTHLTLWKADLAEEG   69 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-------------~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~   69 (338)
                      .+|+++||||+|.||.+++++|+++|++|++++|+.+             ..+.++.... ......++.++.+|++|.+
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~   89 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYD   89 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCHH
Confidence            3689999999999999999999999999999998732             1233322211 1112357899999999999


Q ss_pred             CchhhhC-------CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceee
Q 040253           70 NFDEPIR-------GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTL  132 (338)
Q Consensus        70 ~~~~~~~-------~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~  132 (338)
                      ++.++++       ++|++||+||.....      ..+..+..+++|+.++.++++++...    +...++|++||...+
T Consensus        90 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  169 (286)
T 3uve_A           90 ALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGGL  169 (286)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhhc
Confidence            8887764       799999999964422      12334568899999999998877432    213689999998766


Q ss_pred             eccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHh
Q 040253          133 DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITA  209 (338)
Q Consensus       133 ~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~  209 (338)
                      .                      +......|+.+|...+.+.+.++.+   +|++++++.||.+..+.....   .....
T Consensus       170 ~----------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~  224 (286)
T 3uve_A          170 K----------------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNE---GTFKM  224 (286)
T ss_dssp             S----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSH---HHHHH
T ss_pred             c----------------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCccccc---chhhh
Confidence            3                      1123458999999999999999888   489999999999987753320   00000


Q ss_pred             hhhcccCCC---------CCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          210 LSPITRNEA---------HYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       210 ~~~~~~~~~---------~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      .........         ...... .++.+.+|+|+++++++....  . +..+++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdG  281 (286)
T 3uve_A          225 FRPDLENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDA  281 (286)
T ss_dssp             HCTTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ccccccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECC
Confidence            000000000         000001 468899999999999996543  2 34566644

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.87  E-value=5.1e-21  Score=165.89  Aligned_cols=205  Identities=15%  Similarity=0.157  Sum_probs=148.7

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-------HHHH-HHHhcCCCCCCcEEEEecccCCCCCch
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-------KKKV-KHLLELPKASTHLTLWKADLAEEGNFD   72 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~   72 (338)
                      |+..+|+++||||+|.||.+++++|+++|++|++++|+.+.       .... +.+...   ..++.++.+|++|.+++.
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~   81 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA---GGQALPIVGDIRDGDAVA   81 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH---TSEEEEEECCTTSHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc---CCcEEEEECCCCCHHHHH
Confidence            44457899999999999999999999999999999998763       1111 111111   257899999999999888


Q ss_pred             hhhC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccC
Q 040253           73 EPIR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        73 ~~~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~  136 (338)
                      ++++       ++|++||+||.....     ..+..+..+++|+.++.++.+++...    + ..++|++||...+..  
T Consensus        82 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~--  158 (285)
T 3sc4_A           82 AAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRD-NPHILTLSPPIRLEP--  158 (285)
T ss_dssp             HHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSS-SCEEEECCCCCCCSG--
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECChhhccC--
Confidence            7765       799999999965421     11223467789999999999987654    3 569999999765530  


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhc
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPI  213 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  213 (338)
                                         ...+...|+.+|.+.+.+.+.++.++   |++++++.||.+...       .......   
T Consensus       159 -------------------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t-------~~~~~~~---  209 (285)
T 3sc4_A          159 -------------------KWLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT-------AAVQNLL---  209 (285)
T ss_dssp             -------------------GGSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC-------HHHHHHH---
T ss_pred             -------------------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc-------HHHHhhc---
Confidence                               11234689999999999999999884   899999999843321       1111111   


Q ss_pred             ccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          214 TRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                       ......     ..+...+|+|+++++++....
T Consensus       210 -~~~~~~-----~r~~~pedvA~~~~~l~s~~~  236 (285)
T 3sc4_A          210 -GGDEAM-----ARSRKPEVYADAAYVVLNKPS  236 (285)
T ss_dssp             -TSCCCC-----TTCBCTHHHHHHHHHHHTSCT
T ss_pred             -cccccc-----cCCCCHHHHHHHHHHHhCCcc
Confidence             111111     457889999999999998754

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.87  E-value=6.6e-22  Score=166.85  Aligned_cols=187  Identities=14%  Similarity=0.145  Sum_probs=141.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--------   76 (338)
                      +|+||||||+|+||++++++|+++|++|++++|+++...            ....++.+|++|.+++.++++        
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   70 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSLQG   70 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc------------cccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999999876421            245778999999988777654        


Q ss_pred             -CccEEEEecccCCCCC------CCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMDFES------KDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|+|||+||......      .+..+..+++|+.++.++.+++...- ...++|++||...+.               
T Consensus        71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~---------------  135 (236)
T 1ooe_A           71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG---------------  135 (236)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS---------------
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc---------------
Confidence             7999999999643211      12235678899999999999887642 135899999987663               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHcC-----ccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN-----IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~-----~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                             +..+...|+.+|.+.+.+.+.++.+++     +++++++||.+.++...        ...    ... .    
T Consensus       136 -------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~--------~~~----~~~-~----  191 (236)
T 1ooe_A          136 -------PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNR--------KWM----PNA-D----  191 (236)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHH--------HHS----TTC-C----
T ss_pred             -------CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcchh--------hcC----CCc-c----
Confidence                   112455899999999999999987754     99999999998765310        000    000 0    


Q ss_pred             CCCccccHHHHHHHHHHhhc
Q 040253          224 KQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~  243 (338)
                       ...++..+|+|++++.++.
T Consensus       192 -~~~~~~~~dvA~~i~~~l~  210 (236)
T 1ooe_A          192 -HSSWTPLSFISEHLLKWTT  210 (236)
T ss_dssp             -GGGCBCHHHHHHHHHHHHH
T ss_pred             -ccccCCHHHHHHHHHHHHc
Confidence             1246788999999997773

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.87  E-value=1.6e-21  Score=166.02  Aligned_cols=209  Identities=19%  Similarity=0.181  Sum_probs=150.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEeccc--CCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL--AEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~~~~~~~------   76 (338)
                      +|++|||||+|+||.+++++|+++|++|++++|+.+............ ...++.++.+|+  +|.+++.++++      
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEE-TGRQPQWFILDLLTCTSENCQQLAQRIAVNY   90 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HSCCCEEEECCTTTCCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-cCCCceEEEEecccCCHHHHHHHHHHHHHhC
Confidence            579999999999999999999999999999999876554433221110 013678999999  88877766654      


Q ss_pred             -CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 -GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 -~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                       ++|++||+||....      ...+..+..+++|+.++.++++++    ++.+ ..++|++||...+.            
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~------------  157 (252)
T 3f1l_A           91 PRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSSSVGRQ------------  157 (252)
T ss_dssp             SCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGTS------------
T ss_pred             CCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECChhhcc------------
Confidence             79999999996421      111223467899999999999887    4444 57999999986653            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN--IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                                +..+...|+.+|.+.+.+.+.++.+++  ++++++.||.+..+.        .....    ...      
T Consensus       158 ----------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~--------~~~~~----~~~------  209 (252)
T 3f1l_A          158 ----------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM--------RASAF----PTE------  209 (252)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH--------HHHHC----TTC------
T ss_pred             ----------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch--------hhhhC----Ccc------
Confidence                      112445899999999999999999874  899999998886432        00000    000      


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      ....+...+|+++++++++....  . +..+++.+
T Consensus       210 ~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdg  244 (252)
T 3f1l_A          210 DPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQP  244 (252)
T ss_dssp             CGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSC
T ss_pred             chhccCCHHHHHHHHHHHcCccccCCCCCEEEeCC
Confidence            01347789999999999987543  2 34566643

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.87  E-value=7.8e-22  Score=170.56  Aligned_cols=214  Identities=12%  Similarity=0.065  Sum_probs=149.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+............ ....+.++.+|++|.+++.++++       
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGR-TGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-HSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3578999999999999999999999999999999876554443221110 01235899999999998877764       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhC----C-CccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNA----K-TVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|++||+||....      ...+..+..+++|+.++..+.+++...    + ...++|++||...+.            
T Consensus       111 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------------  178 (281)
T 4dry_A          111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT------------  178 (281)
T ss_dssp             CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC------------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC------------
Confidence            68999999986432      122334568899999988887766432    1 136899999976653            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +..+...|+.+|.+.+.+.+.++.+   +|+++++++||.+..+........        ...   ....
T Consensus       179 ----------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~--------~~~---~~~~  237 (281)
T 4dry_A          179 ----------PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTARMSTG--------VLQ---ANGE  237 (281)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-------CE--------EEC---TTSC
T ss_pred             ----------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhhhcch--------hhh---hhhc
Confidence                      1124568999999999999999877   489999999999876542211000        000   0000


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCCCCce
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNAKGRY  251 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~~~~~  251 (338)
                      .....++..+|+|+++++++..+....+.
T Consensus       238 ~~~~~~~~pedvA~~v~fL~s~~~~~~i~  266 (281)
T 4dry_A          238 VAAEPTIPIEHIAEAVVYMASLPLSANVL  266 (281)
T ss_dssp             EEECCCBCHHHHHHHHHHHHHSCTTEEEE
T ss_pred             ccccCCCCHHHHHHHHHHHhCCCccCccc
Confidence            01135789999999999999987665443

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.87  E-value=3.8e-21  Score=169.80  Aligned_cols=217  Identities=16%  Similarity=0.122  Sum_probs=153.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEE-cCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC-------------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATV-RDPDNKKKVKHLLELPKASTHLTLWKADLAEEG-------------   69 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-------------   69 (338)
                      .+|+||||||+|+||.+++++|+++|++|++++ |+.+........... ....++.++.+|++|.+             
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~  123 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA-RRPNSAITVQADLSNVATAPVSGADGSAPV  123 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-HSTTCEEEEECCCSSSCBCC-------CCB
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh-hcCCeEEEEEeeCCCchhcccccccccccc
Confidence            357899999999999999999999999999999 876554443322110 01146899999999998             


Q ss_pred             ----CchhhhC-------CccEEEEecccCCCCC-------------------CCccchhhhhhhHHHHHHHHHHHhC--
Q 040253           70 ----NFDEPIR-------GCTGVFHLATPMDFES-------------------KDPENEVIRPTINGMVSIMRACKNA--  117 (338)
Q Consensus        70 ----~~~~~~~-------~~d~vi~~a~~~~~~~-------------------~~~~~~~~~~n~~~~~~l~~~~~~~--  117 (338)
                          ++.++++       ++|+|||+||......                   .+..+..+++|+.++..+++++...  
T Consensus       124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~  203 (328)
T 2qhx_A          124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  203 (328)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                7777664       7999999998643211                   1223457899999999998876532  


Q ss_pred             --CC-----ccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEE
Q 040253          118 --KT-----VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFIS  187 (338)
Q Consensus       118 --~~-----~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~i  187 (338)
                        +.     ..+||++||...+.                      +..+...|+.+|.+.+.+.+.++.++   |+++++
T Consensus       204 ~~~~~~~~~~g~IV~isS~~~~~----------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~  261 (328)
T 2qhx_A          204 GTPAKHRGTNYSIINMVDAMTNQ----------------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNG  261 (328)
T ss_dssp             HSCGGGSCSCEEEEEECCTTTTS----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred             hcCCcCCCCCcEEEEECchhhcc----------------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEE
Confidence              10     36899999986653                      11244589999999999999998875   899999


Q ss_pred             EcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC-ccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          188 IIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG-QFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       188 lRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ++||.+..+. . ... ...   ...... ..+     . .+...+|+|+++++++....  ..| .+++.+
T Consensus       262 v~PG~v~T~~-~-~~~-~~~---~~~~~~-~p~-----~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdG  321 (328)
T 2qhx_A          262 VGPGLSVLVD-D-MPP-AVW---EGHRSK-VPL-----YQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDG  321 (328)
T ss_dssp             EEESSBSCCC-C-SCH-HHH---HHHHTT-CTT-----TTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             EecCcccCCc-c-ccH-HHH---HHHHhh-CCC-----CCCCCCHHHHHHHHHHHhCccccCccCcEEEECC
Confidence            9999998876 2 121 111   111111 111     2 57889999999999996432  234 456644

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.87  E-value=2.3e-21  Score=165.27  Aligned_cols=215  Identities=16%  Similarity=0.121  Sum_probs=146.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      ||++|||||+|+||.+++++|+++|++|++++|+.+.......+...   ..++..+     |.+++.++++       +
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~---~~~~~~~-----d~~~v~~~~~~~~~~~g~   72 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET---YPQLKPM-----SEQEPAELIEAVTSAYGQ   72 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH---CTTSEEC-----CCCSHHHHHHHHHHHHSC
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCcEEEE-----CHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999987765554332111   1233333     5565555543       7


Q ss_pred             ccEEEEecccC-CCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           78 CTGVFHLATPM-DFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        78 ~d~vi~~a~~~-~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      +|++||+||.. ...     ..+..+..+++|+.++.++.+++.    +.+ ..++|++||...+.              
T Consensus        73 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--------------  137 (254)
T 1zmt_A           73 VDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG--------------  137 (254)
T ss_dssp             CCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS--------------
T ss_pred             CCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCccccc--------------
Confidence            99999999965 211     112345678999999999888764    334 57999999976653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHH----hhhhcccCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLIT----ALSPITRNEAHY  220 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~----~~~~~~~~~~~~  220 (338)
                              +..+...|+.+|.+.+.+.+.++.++   |+++++++||.++|+.........+..    ........ ...
T Consensus       138 --------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~-~p~  208 (254)
T 1zmt_A          138 --------PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKV-TAL  208 (254)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHH-SSS
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhcc-CCC
Confidence                    11234589999999999999998875   899999999999887643221111110    00000000 011


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCCC--CC-ceEEecC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSSH  256 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~~  256 (338)
                           ..+.+.+|+|+++++++.....  .| .+++.+.
T Consensus       209 -----~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG  242 (254)
T 1zmt_A          209 -----QRLGTQKELGELVAFLASGSCDYLTGQVFWLAGG  242 (254)
T ss_dssp             -----SSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTT
T ss_pred             -----CCCcCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence                 3578999999999999875432  34 5566443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.87  E-value=6.1e-21  Score=166.53  Aligned_cols=226  Identities=18%  Similarity=0.149  Sum_probs=155.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC---------cHHHHHHHhc-CCCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD---------NKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|++|||||+|.||.+++++|++.|++|++++|++.         ..+.+..... ......++.++.+|++|.+++.+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            3589999999999999999999999999999998732         1222222111 11112578999999999998887


Q ss_pred             hhC-------CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccC
Q 040253           74 PIR-------GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        74 ~~~-------~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~  136 (338)
                      +++       ++|++||+||.....      ..+..+..+++|+.++.++++++...    +...++|++||...+.   
T Consensus       107 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~---  183 (299)
T 3t7c_A          107 AVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR---  183 (299)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS---
T ss_pred             HHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc---
Confidence            764       799999999865422      12234578999999999998876432    2247999999987663   


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhc
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPI  213 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  213 (338)
                                         +......|+.+|.+.+.+.+.++.++   |+++++++||.+..+.....   .........
T Consensus       184 -------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~  241 (299)
T 3t7c_A          184 -------------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNE---PTYRMFRPD  241 (299)
T ss_dssp             -------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSH---HHHHHHCTT
T ss_pred             -------------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCcccccc---chhhhhhhh
Confidence                               11234589999999999999999886   89999999999988754321   000000000


Q ss_pred             ccCCC---------CCCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          214 TRNEA---------HYPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       214 ~~~~~---------~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      .....         ...... .++...+|+|+++++++....  . +..+++.+
T Consensus       242 ~~~~~~~~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdG  294 (299)
T 3t7c_A          242 LENPTVEDFQVASRQMHVLP-IPYVEPADISNAILFLVSDDARYITGVSLPVDG  294 (299)
T ss_dssp             SSSCCHHHHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             hccchhhHHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCC
Confidence            00000         000000 357899999999999997543  2 34566644

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.87  E-value=3.7e-21  Score=165.53  Aligned_cols=223  Identities=16%  Similarity=0.123  Sum_probs=154.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|+||++++++|+++|++|++++|+... .+........  ...++.++.+|++|.+++.++++      
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKA--LGSDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999999999998875432 2322221111  12578999999999998887764      


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++.+++...- ...++|++||.....  .             
T Consensus        95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~--~-------------  159 (270)
T 3is3_A           95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD--F-------------  159 (270)
T ss_dssp             SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT--C-------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc--C-------------
Confidence             789999999965421     223345678999999999999887653 134999999965221  0             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC----C---h-hHHHhhhhcccCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM----P---P-SLITALSPITRNEA  218 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~----~---~-~~~~~~~~~~~~~~  218 (338)
                            +.++...|+.+|.+.+.+.+.++.++   |+++++++||.+..+......    .   . ......... ....
T Consensus       160 ------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  232 (270)
T 3is3_A          160 ------SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMA-AHAS  232 (270)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHH-HHHS
T ss_pred             ------CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHH-HhcC
Confidence                  11245689999999999999999884   899999999999876421100    0   0 000000000 0001


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      +.     .++.+.+|+|+++++++....  ..| .+++.+
T Consensus       233 p~-----~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG  267 (270)
T 3is3_A          233 PL-----HRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDG  267 (270)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             CC-----CCCCCHHHHHHHHHHHcCCccCCccCcEEEeCC
Confidence            11     458889999999999996543  234 556644

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.87  E-value=6.5e-21  Score=165.58  Aligned_cols=217  Identities=18%  Similarity=0.163  Sum_probs=152.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCC----CCCchhhhC--
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAE----EGNFDEPIR--   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d----~~~~~~~~~--   76 (338)
                      .+|+++||||+|+||.+++++|+++|++|++++|+. +........... ....++.++.+|++|    .+++.++++  
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNK-ERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHH-HSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh-hcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            358999999999999999999999999999999987 544433222110 011468999999999    776666554  


Q ss_pred             -----CccEEEEecccCCCCCC---------------CccchhhhhhhHHHHHHHHHHHhCC---C------ccEEEEec
Q 040253           77 -----GCTGVFHLATPMDFESK---------------DPENEVIRPTINGMVSIMRACKNAK---T------VRRLVFTS  127 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~~~~---------------~~~~~~~~~n~~~~~~l~~~~~~~~---~------~~~~v~~S  127 (338)
                           ++|++||+||.......               +..+..+++|+.++..+++++...-   .      ..++|++|
T Consensus       101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~is  180 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLC  180 (288)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEEC
T ss_pred             HHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEe
Confidence                 79999999986542111               1223578899999999988775432   1      35899999


Q ss_pred             CceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh
Q 040253          128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP  204 (338)
Q Consensus       128 s~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~  204 (338)
                      |...+.                      +..+...|+.+|.+.+.+.+.++.++   |+++++++||.++++. . . ..
T Consensus       181 S~~~~~----------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~-~~  235 (288)
T 2x9g_A          181 DAMVDQ----------------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-M-GE  235 (288)
T ss_dssp             CTTTTS----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-S-CH
T ss_pred             cccccC----------------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-c-Ch
Confidence            987653                      11245589999999999999988875   8999999999999886 2 1 11


Q ss_pred             hHHHhhhhcccCCCCCCCCCCCcc-ccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          205 SLITALSPITRNEAHYPIIKQGQF-VHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~-i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ...   ...... ...     ..+ ...+|+|+++++++....  ..| .+++.+
T Consensus       236 ~~~---~~~~~~-~p~-----~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdG  281 (288)
T 2x9g_A          236 EEK---DKWRRK-VPL-----GRREASAEQIADAVIFLVSGSAQYITGSIIKVDG  281 (288)
T ss_dssp             HHH---HHHHHT-CTT-----TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             HHH---HHHHhh-CCC-----CCCCCCHHHHHHHHHHHhCccccCccCCEEEECc
Confidence            111   101111 111     245 789999999999997532  234 445543

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.87  E-value=4e-21  Score=163.98  Aligned_cols=219  Identities=14%  Similarity=0.090  Sum_probs=154.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+++||||+|+||.+++++|+++|++|+++.+ +.+..........  ....++.++.+|++|.+++.++++      
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ--SNGGSAFSIGANLESLHGVEALYSSLDNEL   83 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHH--HTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHH--hcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999988755 4433333222111  112578899999999887776653      


Q ss_pred             -------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcC
Q 040253           77 -------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 -------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                             ++|++||+||.....     ..+..+..+++|+.++.++++++...- ...++|++||...+.          
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~----------  153 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI----------  153 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS----------
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc----------
Confidence                   299999999864421     112234678899999999999987651 146899999987653          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhH-HHhhhhcccCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSL-ITALSPITRNEAH  219 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~  219 (338)
                                  +.+....|+.+|.+.+.+.+.++.++   |+++++++||.+..+.......... ....    .....
T Consensus       154 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~----~~~~~  217 (255)
T 3icc_A          154 ------------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYA----TTISA  217 (255)
T ss_dssp             ------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHH----HHTST
T ss_pred             ------------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhh----hccCC
Confidence                        11234589999999999999998875   8999999999998775433222111 1111    11111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC--C-CCceEEec
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN--A-KGRYICSS  255 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~--~-~~~~~~~~  255 (338)
                      +     .++.+.+|+|+++.+++....  . +..+++.+
T Consensus       218 ~-----~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdg  251 (255)
T 3icc_A          218 F-----NRLGEVEDIADTAAFLASPDSRWVTGQLIDVSG  251 (255)
T ss_dssp             T-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             c-----CCCCCHHHHHHHHHHHhCcccCCccCCEEEecC
Confidence            1     458899999999999986433  2 44566644

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.87  E-value=1.7e-21  Score=166.84  Aligned_cols=211  Identities=18%  Similarity=0.166  Sum_probs=148.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||+|+||.+++++|+++|++|++++|+.+............  ..++.++.+|++|.+++.++++       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK--GVEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--TSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3589999999999999999999999999999999866544433222111  2468999999999988777664       


Q ss_pred             CccEEEEecccC-CC-----CCCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPM-DF-----ESKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~-~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|+|||+||.. ..     ...+..+..+++|+.++.++++++...    + ..++|++||...+.  .          
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~----------  150 (262)
T 1zem_A           84 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVK--G----------  150 (262)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHS--C----------
T ss_pred             CCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcchhhcc--C----------
Confidence            799999999864 21     112234567889999999988876543    4 57999999987663  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC------------CChhHHHhhh
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS------------MPPSLITALS  211 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~------------~~~~~~~~~~  211 (338)
                                ..+...|+.+|...+.+.+.++.++   |+++++++||.+..+.....            ....-.....
T Consensus       151 ----------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (262)
T 1zem_A          151 ----------PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQ  220 (262)
T ss_dssp             ----------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHH
T ss_pred             ----------CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHH
Confidence                      1134589999999999998888764   89999999998865431100            0000000000


Q ss_pred             hcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          212 PITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .... ..+.     .++...+|+|+++++++...
T Consensus       221 ~~~~-~~p~-----~r~~~p~dvA~~v~~l~s~~  248 (262)
T 1zem_A          221 QMIG-SVPM-----RRYGDINEIPGVVAFLLGDD  248 (262)
T ss_dssp             HHHH-TSTT-----SSCBCGGGSHHHHHHHHSGG
T ss_pred             HHHh-cCCC-----CCCcCHHHHHHHHHHHcCch
Confidence            0000 0111     35788999999999998753

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.86  E-value=3.7e-21  Score=165.46  Aligned_cols=204  Identities=15%  Similarity=0.171  Sum_probs=142.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |++|||||+|+||.+++++|+++|++|++++|+.+............   .++.++.+|++|.+++.++++       ++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            78999999999999999999999999999999866554443322211   468999999999988877764       46


Q ss_pred             cEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHH----hCCCcc-EEEEecCceeeeccCCCCCCcCCCCC
Q 040253           79 TGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACK----NAKTVR-RLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        79 d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~-~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      |++||+||....      ...+..+..+++|+.++.++.+++.    +.+ .. ++|++||...+.              
T Consensus        99 D~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~~IV~isS~~~~~--------------  163 (272)
T 2nwq_A           99 RGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG-AGASIVNLGSVAGKW--------------  163 (272)
T ss_dssp             CEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-TTCEEEEECCGGGTS--------------
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEeCCchhcc--------------
Confidence            999999986431      1112345678999999888776653    344 46 999999986653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +..+...|+.+|...+.+.+.++.+.   |+++++++||.+.++........... ...      ..+   .
T Consensus       164 --------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~-~~~------~~~---~  225 (272)
T 2nwq_A          164 --------PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVRFGGDQA-RYD------KTY---A  225 (272)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC------------------------------
T ss_pred             --------CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcccccchH-HHH------Hhh---c
Confidence                    11234589999999999999988764   89999999999987642211000000 000      000   0


Q ss_pred             CCccccHHHHHHHHHHhhcCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ...++..+|+|+++++++..+
T Consensus       226 ~~~~~~pedvA~~v~~l~s~~  246 (272)
T 2nwq_A          226 GAHPIQPEDIAETIFWIMNQP  246 (272)
T ss_dssp             CCCCBCHHHHHHHHHHHHTSC
T ss_pred             cCCCCCHHHHHHHHHHHhCCC
Confidence            123578999999999999864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.86  E-value=1.1e-21  Score=165.96  Aligned_cols=198  Identities=14%  Similarity=0.074  Sum_probs=146.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+|+||||+|+||++++++|+++|++|++++|+.+...            .....+.+|++|.+++.++++       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~D~~~~~~v~~~~~~~~~~~~   73 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLLG   73 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999999875421            245778999999988877664       


Q ss_pred             --CccEEEEecccCCCCC------CCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 --GCTGVFHLATPMDFES------KDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                        ++|++||+||......      .+..+..+++|+.++..+.+++...- ...++|++||...+.              
T Consensus        74 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------  139 (241)
T 1dhr_A           74 DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD--------------  139 (241)
T ss_dssp             TCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS--------------
T ss_pred             CCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc--------------
Confidence              6899999999643211      12234678899999999999886542 135899999987663              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                              +..+...|+.+|.+.+.+.+.++.++     |+++++++||.+-.+..        ....    .. ..   
T Consensus       140 --------~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~~--------~~~~----~~-~~---  195 (241)
T 1dhr_A          140 --------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN--------RKSM----PE-AD---  195 (241)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH--------HHHS----TT-SC---
T ss_pred             --------CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCccc--------cccC----cc-hh---
Confidence                    11244589999999999999988764     59999999998865421        0000    00 00   


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCC--CC-ceEE
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNA--KG-RYIC  253 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~  253 (338)
                        ...++..+|+|++++.++.....  .| .+.+
T Consensus       196 --~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v  227 (241)
T 1dhr_A          196 --FSSWTPLEFLVETFHDWITGNKRPNSGSLIQV  227 (241)
T ss_dssp             --GGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred             --hccCCCHHHHHHHHHHHhcCCCcCccceEEEE
Confidence              12467889999999999875432  34 4555

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.86  E-value=7.2e-22  Score=171.48  Aligned_cols=201  Identities=15%  Similarity=0.028  Sum_probs=145.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+++||||||+|+||++++++|+++|++|++++|+.+............ ...++.++.+|++|.+++.++++       
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLEL-GAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-TCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-CCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            3579999999999999999999999999999999876544433211100 11368999999999988877664       


Q ss_pred             CccEEEEe-cccCCCC----CCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 GCTGVFHL-ATPMDFE----SKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 ~~d~vi~~-a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      ++|+|||+ |+.....    ..+.....+++|+.++.++++++...   + ..++|++||...+.               
T Consensus       106 ~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~---------------  169 (286)
T 1xu9_A          106 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKV---------------  169 (286)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTS---------------
T ss_pred             CCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC-CCEEEEECCccccc---------------
Confidence            79999999 4543221    11223467899999999998877543   2 36999999987653               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                             +.++...|+.+|...+.+++.++.++     ++++++++||.+..+..        ....   .+.       
T Consensus       170 -------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~--------~~~~---~~~-------  224 (286)
T 1xu9_A          170 -------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETA--------MKAV---SGI-------  224 (286)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHH--------HHHS---CGG-------
T ss_pred             -------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhH--------HHhc---ccc-------
Confidence                   11245689999999999998888765     89999999998865421        0000   010       


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      .....++.+|+|+.++.+++.+.
T Consensus       225 ~~~~~~~~~~vA~~i~~~~~~~~  247 (286)
T 1xu9_A          225 VHMQAAPKEECALEIIKGGALRQ  247 (286)
T ss_dssp             GGGGCBCHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCCHHHHHHHHHHHHhcCC
Confidence            11357899999999999998753

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.85  E-value=9.1e-21  Score=162.89  Aligned_cols=219  Identities=19%  Similarity=0.151  Sum_probs=155.5

Q ss_pred             CCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcH--HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            4 IAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNK--KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         4 ~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      .+|+|+||||+  |+||.+++++|+++|++|++++|+....  +..+.+....  ..++.++.+|++|.+++.++++   
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY--GIKAKAYKCQVDSYESCEKLVKDVV   96 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH--CCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc--CCceeEEecCCCCHHHHHHHHHHHH
Confidence            46899999999  9999999999999999999999876653  2223222111  1578999999999998877664   


Q ss_pred             ----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                          ++|++||+||.....     ..+..+..+++|+.++.++++++    ++.+ ..++|++||...+.  ..      
T Consensus        97 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~--~~------  167 (267)
T 3gdg_A           97 ADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASMSGHI--AN------  167 (267)
T ss_dssp             HHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS--CC------
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEccccccc--cC------
Confidence                689999999865422     12234568899999999998887    3344 56999999976653  10      


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcC--ccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN--IDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  ...+...|+.+|.+.+.+++.++.+++  ++++++.||.+..+.... .........    ...... 
T Consensus       168 ------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~-~~~~~~~~~----~~~~~~-  229 (267)
T 3gdg_A          168 ------------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDF-VPKETQQLW----HSMIPM-  229 (267)
T ss_dssp             ------------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGG-SCHHHHHHH----HTTSTT-
T ss_pred             ------------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhh-CCHHHHHHH----HhcCCC-
Confidence                        112456899999999999999998874  789999999997654321 111111111    111111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                          .++.+.+|+|+++++++....  ..| .+++.+
T Consensus       230 ----~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdg  262 (267)
T 3gdg_A          230 ----GRDGLAKELKGAYVYFASDASTYTTGADLLIDG  262 (267)
T ss_dssp             ----SSCEETHHHHHHHHHHHSTTCTTCCSCEEEEST
T ss_pred             ----CCCcCHHHHHhHhheeecCccccccCCEEEECC
Confidence                468899999999999997533  234 556643

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.85  E-value=1.5e-20  Score=157.86  Aligned_cols=208  Identities=15%  Similarity=0.140  Sum_probs=150.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      |.|+||||||++-||.+++++|++.|++|.+.+|+.+.......   .   .+++..+.+|++|++++.++++       
T Consensus         1 MnK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~---~---~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g   74 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK---E---RPNLFYFHGDVADPLTLKKFVEYAMEKLQ   74 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT---T---CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---h---cCCEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999999999999998654443322   1   2578999999999998877653       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      ++|++||+||....     ...+.++..+++|+.++..+.+++...  ....++|++||...+.  .             
T Consensus        75 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~~--~-------------  139 (247)
T 3ged_A           75 RIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAFQ--S-------------  139 (247)
T ss_dssp             CCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGTS--C-------------
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeeccccc--C-------------
Confidence            79999999985431     223345678999999998888766432  1136899999976552  1             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                             .+....|+.+|.....+.+.++.++  ++++..+-||.+--+.... ..   ....    . ..+.     .+
T Consensus       140 -------~~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~-~~---~~~~----~-~~Pl-----~R  198 (247)
T 3ged_A          140 -------EPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQE-FT---QEDC----A-AIPA-----GK  198 (247)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC----CC---HHHH----H-TSTT-----SS
T ss_pred             -------CCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHH-HH---HHHH----h-cCCC-----CC
Confidence                   1124589999999999999998886  7999999999885443211 11   1111    1 1111     45


Q ss_pred             cccHHHHHHHHHHhhcCCCCCCc-eEE
Q 040253          228 FVHLDDLCSAHIFLFEHPNAKGR-YIC  253 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~~~~-~~~  253 (338)
                      +...+|+|+++++++...-..|. +.+
T Consensus       199 ~g~pediA~~v~fL~s~~~iTG~~i~V  225 (247)
T 3ged_A          199 VGTPKDISNMVLFLCQQDFITGETIIV  225 (247)
T ss_dssp             CBCHHHHHHHHHHHHHCSSCCSCEEEE
T ss_pred             CcCHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            78899999999999975444443 444

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.85  E-value=1.8e-20  Score=158.00  Aligned_cols=215  Identities=19%  Similarity=0.130  Sum_probs=153.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |+-.+|+++||||++-||.++++.|++.|.+|.+.+|+.+..++.......  ...++..+.+|++|++++.++++    
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~--~g~~~~~~~~Dvt~~~~v~~~~~~~~~   80 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG--MGKEVLGVKADVSKKKDVEEFVRRTFE   80 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            344579999999999999999999999999999999987765554433221  12578999999999998887663    


Q ss_pred             ---CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ---GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                         ++|++||+||....      ...+.++..+++|+.++..+.+++.    +.+ ..++|++||.....          
T Consensus        81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~----------  149 (254)
T 4fn4_A           81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIR----------  149 (254)
T ss_dssp             HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC----------
T ss_pred             HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcC----------
Confidence               79999999985431      1223456789999999988877653    334 57999999976542          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +.+....|+.+|.....+.+.++.++   |+++..|-||.+-.+.........-...... .....+.
T Consensus       150 ------------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~-~~~~~~~  216 (254)
T 4fn4_A          150 ------------GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTL-TKLMSLS  216 (254)
T ss_dssp             ------------SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHH-HHHHTTC
T ss_pred             ------------CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHH-HhcCCCC
Confidence                        11234589999999999999998885   8999999999997664322211111100000 0110111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                           .++...+|+|.++++++....
T Consensus       217 -----~R~g~pediA~~v~fLaSd~a  237 (254)
T 4fn4_A          217 -----SRLAEPEDIANVIVFLASDEA  237 (254)
T ss_dssp             -----CCCBCHHHHHHHHHHHHSGGG
T ss_pred             -----CCCcCHHHHHHHHHHHhCchh
Confidence                 357789999999999986543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.85  E-value=1.9e-20  Score=161.32  Aligned_cols=205  Identities=15%  Similarity=0.113  Sum_probs=147.2

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-------HHHHHHHhcCCCCCCcEEEEecccCCCCCchh
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-------KKKVKHLLELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      |...+|+++||||+|.||.+++++|+++|++|++++|+.+.       .........  ....++.++.+|++|.+++.+
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~   79 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVN--AAGGQGLALKCDIREEDQVRA   79 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHH--HHTSEEEEEECCTTCHHHHHH
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHH--hcCCeEEEEeCCCCCHHHHHH
Confidence            55668999999999999999999999999999999998753       121111110  012578999999999998877


Q ss_pred             hhC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCC
Q 040253           74 PIR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEH  137 (338)
Q Consensus        74 ~~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~  137 (338)
                      +++       ++|++||+||.....     ..+..+..+++|+.++..+.+++..    .+ ..++|++||...+...  
T Consensus        80 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~~~--  156 (274)
T 3e03_A           80 AVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP-NPHILTLAPPPSLNPA--  156 (274)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSS-SCEEEECCCCCCCCHH--
T ss_pred             HHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcC-CceEEEECChHhcCCC--
Confidence            664       799999999864321     1223356788999999999887643    33 5799999998765310  


Q ss_pred             CCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcc
Q 040253          138 RKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPIT  214 (338)
Q Consensus       138 ~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  214 (338)
                                        ...+...|+.+|.+.+.+.+.++.++   |++++++.||.+......    .    ..   .
T Consensus       157 ------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~----~----~~---~  207 (274)
T 3e03_A          157 ------------------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI----N----ML---P  207 (274)
T ss_dssp             ------------------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------
T ss_pred             ------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh----h----hc---c
Confidence                              01234589999999999999998875   899999999854332211    0    00   0


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ..       ....+...+|+|++++.++....
T Consensus       208 ~~-------~~~~~~~pedvA~~v~~l~s~~~  232 (274)
T 3e03_A          208 GV-------DAAACRRPEIMADAAHAVLTREA  232 (274)
T ss_dssp             CC-------CGGGSBCTHHHHHHHHHHHTSCC
T ss_pred             cc-------cccccCCHHHHHHHHHHHhCccc
Confidence            00       01247789999999999997644

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.8e-20  Score=160.39  Aligned_cols=212  Identities=19%  Similarity=0.148  Sum_probs=142.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--------   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--------   75 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++|+.+...........  ...++.++.+|++|.+++.+++        
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQS--LGGQCVPVVCDSSQESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--cCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            468999999999999999999999999999999986554433221110  0147889999999998876654        


Q ss_pred             CCccEEEEecc--cC--------C--CCCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCC
Q 040253           76 RGCTGVFHLAT--PM--------D--FESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        76 ~~~d~vi~~a~--~~--------~--~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~  139 (338)
                      .++|++||+||  ..        .  ....+..+..+++|+.++..+.+++.    +.+ ..++|++||...+.  .   
T Consensus        82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~--~---  155 (260)
T 2qq5_A           82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG-QGLIVVISSPGSLQ--Y---  155 (260)
T ss_dssp             TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT-CCEEEEECCGGGTS--C---
T ss_pred             CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC-CcEEEEEcChhhcC--C---
Confidence            35799999994  21        1  11223345677889888877766553    444 57999999986652  0   


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccC
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRN  216 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~  216 (338)
                                        .+...|+.+|...+.+.+.++.+   +|+++++++||.+..+............ .......
T Consensus       156 ------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~-~~~~~~~  216 (260)
T 2qq5_A          156 ------------------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEVL-QDPVLKQ  216 (260)
T ss_dssp             ------------------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC------------------
T ss_pred             ------------------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhcccccc-chhHHHH
Confidence                              13458999999999999998876   3899999999999876432111000000 0000000


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                         ... ....+...+|+|+++++++....
T Consensus       217 ---~~~-~~~~~~~pe~va~~v~~l~s~~~  242 (260)
T 2qq5_A          217 ---FKS-AFSSAETTELSGKCVVALATDPN  242 (260)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHTCTT
T ss_pred             ---HHh-hhccCCCHHHHHHHHHHHhcCcc
Confidence               000 00235689999999999997653

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.85  E-value=4.1e-20  Score=160.69  Aligned_cols=217  Identities=17%  Similarity=0.150  Sum_probs=152.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEE-cCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC-------------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATV-RDPDNKKKVKHLLELPKASTHLTLWKADLAEEG-------------   69 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-------------   69 (338)
                      .+|++|||||+|+||.+++++|+++|++|++++ |+.+........... ....++.++.+|++|.+             
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA-RRPNSAITVQADLSNVATAPVSGADGSAPV   86 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-HSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhh-hcCCeeEEEEeecCCccccccccccccccc
Confidence            458999999999999999999999999999999 876554433222110 01147899999999998             


Q ss_pred             ----CchhhhC-------CccEEEEecccCCCCC-------------------CCccchhhhhhhHHHHHHHHHHHhC--
Q 040253           70 ----NFDEPIR-------GCTGVFHLATPMDFES-------------------KDPENEVIRPTINGMVSIMRACKNA--  117 (338)
Q Consensus        70 ----~~~~~~~-------~~d~vi~~a~~~~~~~-------------------~~~~~~~~~~n~~~~~~l~~~~~~~--  117 (338)
                          ++.++++       ++|++||+||......                   .+..+..+++|+.++..+++++...  
T Consensus        87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~  166 (291)
T 1e7w_A           87 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  166 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                7777664       7999999998643211                   1223467889999999998877532  


Q ss_pred             -CC------ccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEE
Q 040253          118 -KT------VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFIS  187 (338)
Q Consensus       118 -~~------~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~i  187 (338)
                       ..      ..++|++||...+.                      +......|+.+|...+.+.+.++.++   |+++++
T Consensus       167 ~~~~~~~~~~g~Iv~isS~~~~~----------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~  224 (291)
T 1e7w_A          167 GTPAKHRGTNYSIINMVDAMTNQ----------------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNG  224 (291)
T ss_dssp             TSCGGGSCSCEEEEEECCTTTTS----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred             hcCCCCCCCCcEEEEEechhhcC----------------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEE
Confidence             11      36899999986653                      11234589999999999999988874   899999


Q ss_pred             EcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC-ccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          188 IIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG-QFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       188 lRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ++||.+..+. .  ........   ... ....     . .+...+|+|+++++++....  ..| .+++.+
T Consensus       225 v~PG~v~T~~-~--~~~~~~~~---~~~-~~p~-----~~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdG  284 (291)
T 1e7w_A          225 VGPGLSVLVD-D--MPPAVWEG---HRS-KVPL-----YQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDG  284 (291)
T ss_dssp             EEESSBCCGG-G--SCHHHHHH---HHT-TCTT-----TTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             EeeCCccCCc-c--CCHHHHHH---HHh-hCCC-----CCCCCCHHHHHHHHHHHhCCcccCccCcEEEECC
Confidence            9999987654 2  21111111   111 1111     2 57889999999999996432  244 445543

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.84  E-value=1.5e-20  Score=159.59  Aligned_cols=200  Identities=20%  Similarity=0.160  Sum_probs=144.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEeccc--CCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL--AEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl--~d~~~~~~~~~-----   76 (338)
                      .+|+++||||+|+||++++++|+++|++|++++|+............... .++..++.+|+  +|.+++.++++     
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG-QPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-SCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC-CCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999999999999998766555433222111 14566777777  77777766553     


Q ss_pred             --CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|++||+||.....      ..+..+..+++|+.++.++++++    ++.+ ..++|++||...+.           
T Consensus        92 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~-----------  159 (247)
T 3i1j_A           92 FGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE-DASIAFTSSSVGRK-----------  159 (247)
T ss_dssp             HSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS-SEEEEEECCGGGTS-----------
T ss_pred             CCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCeEEEEcchhhcC-----------
Confidence              799999999964311      12334567899999999999887    3444 57999999976553           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                 +..+...|+.+|.+.+.+.+.++.++    +++++++.||.+..+.        .....    ...   
T Consensus       160 -----------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~--------~~~~~----~~~---  213 (247)
T 3i1j_A          160 -----------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM--------RAQAY----PDE---  213 (247)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH--------HHHHS----TTS---
T ss_pred             -----------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc--------chhcc----ccc---
Confidence                       11245589999999999999998874    7899999998875432        01000    000   


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         ....+...+|+++++++++...
T Consensus       214 ---~~~~~~~p~dva~~~~~l~s~~  235 (247)
T 3i1j_A          214 ---NPLNNPAPEDIMPVYLYLMGPD  235 (247)
T ss_dssp             ---CGGGSCCGGGGTHHHHHHHSGG
T ss_pred             ---CccCCCCHHHHHHHHHHHhCch
Confidence               0134677999999999998653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.84  E-value=7.1e-20  Score=162.46  Aligned_cols=208  Identities=16%  Similarity=0.208  Sum_probs=150.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH-------HH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK-------KK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      +|+||||||+|.||.+++++|+++|++|++++|+.+..       .. .+.+...   ..++.++.+|++|.+++.++++
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~---g~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV---GGKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT---TCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc---CCeEEEEEccCCCHHHHHHHHH
Confidence            57899999999999999999999999999999987642       11 1222211   2578999999999998887764


Q ss_pred             -------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCC
Q 040253           77 -------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKP  140 (338)
Q Consensus        77 -------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~  140 (338)
                             ++|+|||+||.....     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+...     
T Consensus       122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS~~~~~~~-----  195 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK-VAHILNISPPLNLNPV-----  195 (346)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCS-SCEEEEECCCCCCCGG-----
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHcCCC-----
Confidence                   799999999964421     112335678999999999999874    334 5799999998766310     


Q ss_pred             CcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          141 VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       141 ~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                     ...+...|+.+|...+.+.+.++.++  +++++++.||.++...       ... ..   .+. .
T Consensus       196 ---------------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T~-------~~~-~~---~~~-~  248 (346)
T 3kvo_A          196 ---------------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHTA-------AMD-ML---GGP-G  248 (346)
T ss_dssp             ---------------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCCH-------HHH-HH---CC---
T ss_pred             ---------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCccccH-------HHH-hh---ccc-c
Confidence                           01245689999999999999999886  7999999998643221       111 11   111 1


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC-CCCceEE
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN-AKGRYIC  253 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~-~~~~~~~  253 (338)
                      .     ...+...+|+|++++.++.... ..|.+++
T Consensus       249 ~-----~~r~~~pedvA~~v~~L~s~~~~itG~~iv  279 (346)
T 3kvo_A          249 I-----ESQCRKVDIIADAAYSIFQKPKSFTGNFVI  279 (346)
T ss_dssp             C-----GGGCBCTHHHHHHHHHHHTSCTTCCSCEEE
T ss_pred             c-----cccCCCHHHHHHHHHHHHhcCCCCCceEEE
Confidence            1     1357789999999999998722 2454444

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.84  E-value=9.1e-20  Score=160.04  Aligned_cols=215  Identities=15%  Similarity=0.113  Sum_probs=145.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhhC-------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPIR-------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~-------   76 (338)
                      +++||||||+|+||.+++++|+++|++|++++|+.............. ...++.++.+|++|. +.+.++++       
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~g   90 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS-NHENVVFHQLDVTDPIATMSSLADFIKTHFG   90 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-TCCSEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEccCCCcHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999876644433222211 124799999999998 76665543       


Q ss_pred             CccEEEEecccCCCC-----------------------------------CCCccchhhhhhhHHHHHHHHHHH----hC
Q 040253           77 GCTGVFHLATPMDFE-----------------------------------SKDPENEVIRPTINGMVSIMRACK----NA  117 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----------------------------------~~~~~~~~~~~n~~~~~~l~~~~~----~~  117 (338)
                      ++|+|||+||.....                                   ..+..+..+++|+.++..+++++.    +.
T Consensus        91 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~  170 (311)
T 3o26_A           91 KLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLS  170 (311)
T ss_dssp             SCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhccC
Confidence            799999999965310                                   111223568999999988888764    33


Q ss_pred             CCccEEEEecCceeeeccCCCC----CCcCCCCCCchhh-----------------hhhccCCCchHHHHHHHHHHHHHH
Q 040253          118 KTVRRLVFTSSAGTLDVEEHRK----PVYDETSWSDLDF-----------------VRSVKMTGWMYFVSKTLAEQAAWK  176 (338)
Q Consensus       118 ~~~~~~v~~Ss~~v~~~~~~~~----~~~~e~~~~~~~~-----------------~~~~~~p~~~Y~~sK~~~E~~~~~  176 (338)
                      + ..++|++||...+.......    ...++..+.....                 ....+.+...|+.||.+.+.+.+.
T Consensus       171 ~-~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~  249 (311)
T 3o26_A          171 D-SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTRV  249 (311)
T ss_dssp             S-SCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHHHH
T ss_pred             C-CCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHHHH
Confidence            3 57999999986653111000    0000000000000                 000112456899999999999999


Q ss_pred             HHHHc-CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          177 FAEEN-NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       177 ~~~~~-~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      +++++ +++++++.||.|..+....                         ......++.++.++.++..+.
T Consensus       250 la~e~~~i~v~~v~PG~v~T~~~~~-------------------------~~~~~~~~~a~~~~~~~~~~~  295 (311)
T 3o26_A          250 LANKIPKFQVNCVCPGLVKTEMNYG-------------------------IGNYTAEEGAEHVVRIALFPD  295 (311)
T ss_dssp             HHHHCTTSEEEEECCCSBCSGGGTT-------------------------CCSBCHHHHHHHHHHHHTCCS
T ss_pred             HHhhcCCceEEEecCCceecCCcCC-------------------------CCCCCHHHHHHHHHHHHhCCC
Confidence            99987 7999999999886543110                         123578889999988876543

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.84  E-value=6.4e-20  Score=152.98  Aligned_cols=214  Identities=16%  Similarity=0.100  Sum_probs=151.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      .+|+++||||++-||..++++|++.|++|.+.+|+.+....        ....++..+.+|++|++++.++++   ++|+
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~--------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDi   81 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA--------PRHPRIRREELDITDSQRLQRLFEALPRLDV   81 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS--------CCCTTEEEEECCTTCHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh--------hhcCCeEEEEecCCCHHHHHHHHHhcCCCCE
Confidence            47999999999999999999999999999999998765332        112578999999999998888765   7999


Q ss_pred             EEEecccCCC---CCCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhh
Q 040253           81 VFHLATPMDF---ESKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRS  155 (338)
Q Consensus        81 vi~~a~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~  155 (338)
                      +||+||....   ...+.++..+++|+.++..+.+++...-  +..++|++||.....                      
T Consensus        82 LVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------------  139 (242)
T 4b79_A           82 LVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYSTF----------------------  139 (242)
T ss_dssp             EEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGTS----------------------
T ss_pred             EEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccccC----------------------
Confidence            9999986431   1223456788999999988877664321  126899999976542                      


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHH
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLD  232 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~  232 (338)
                      +.+....|+.||.....+.+.++.++   |+++..|-||.+..|......... .. ....... .++     .++...+
T Consensus       140 ~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~-~~-~~~~~~~-~Pl-----gR~g~pe  211 (242)
T 4b79_A          140 GSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADV-EA-TRRIMQR-TPL-----ARWGEAP  211 (242)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCH-HH-HHHHHHT-CTT-----CSCBCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCH-HH-HHHHHhc-CCC-----CCCcCHH
Confidence            11134589999999999999998875   899999999999766432211111 00 1111111 122     4588899


Q ss_pred             HHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          233 DLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       233 D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                      |+|.++++++.....  .| .+.+.+
T Consensus       212 eiA~~v~fLaSd~a~~iTG~~l~VDG  237 (242)
T 4b79_A          212 EVASAAAFLCGPGASFVTGAVLAVDG  237 (242)
T ss_dssp             HHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             HHHHHHHHHhCchhcCccCceEEECc
Confidence            999999999865432  33 445543

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.83  E-value=2.3e-19  Score=151.96  Aligned_cols=223  Identities=17%  Similarity=0.179  Sum_probs=154.4

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      -.+|+++||||++-||.++++.|++.|.+|.+.+|+.+.....+.+...   ..++..+.+|++|++++.++++      
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQR---QPRATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhc---CCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            3579999999999999999999999999999999988775554443322   2578999999999988877653      


Q ss_pred             -CccEEEEecccCCC----CCCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMDF----ESKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       ++|++||+||....    ...+.++..+++|+.++..+.+++..+-  ...++|++||.....                
T Consensus        82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~~----------------  145 (258)
T 4gkb_A           82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAVT----------------  145 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHHH----------------
T ss_pred             CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhcc----------------
Confidence             79999999985431    1223355678899999988877664220  126899999986653                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh--HHHhhhhcccCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS--LITALSPITRNEAHYPIIK  224 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  224 (338)
                            +.+....|+.+|.....+.+.++.++   ||++..|-||.+-.+.........  ............ ++  + 
T Consensus       146 ------~~~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-pl--g-  215 (258)
T 4gkb_A          146 ------GQGNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKV-PL--G-  215 (258)
T ss_dssp             ------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTC-TT--T-
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcC-CC--C-
Confidence                  11234589999999999999999875   899999999999766432211000  000000000111 11  1 


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                       .++...+|+|.++++++.....  .| .+.+.+
T Consensus       216 -~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDG  248 (258)
T 4gkb_A          216 -RRFTTPDEIADTAVFLLSPRASHTTGEWLFVDG  248 (258)
T ss_dssp             -TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHhCchhcCccCCeEEECC
Confidence             3678899999999999864332  34 455533

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.83  E-value=3.3e-20  Score=156.50  Aligned_cols=219  Identities=14%  Similarity=0.074  Sum_probs=154.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||++-||..+++.|++.|++|.+.+|+.+...+.......  ...++..+.+|++|++++.++++       
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTR--KGYDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH--TTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            479999999999999999999999999999999987655444332211  12578999999999998877663       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+.++..+++|+.++..+.+++.    +.+...++|++||.....              
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~--------------  151 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA--------------  151 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--------------
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC--------------
Confidence            69999999986442     2234456789999999988877653    222246999999976553              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  223 (338)
                              +.+....|+.+|.....+.+.++.++   |+++..|-||.+..+...... ........    ....+.   
T Consensus       152 --------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~----~~~~Pl---  216 (255)
T 4g81_D          152 --------ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWV----KSSTPS---  216 (255)
T ss_dssp             --------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHH----HHHSTT---
T ss_pred             --------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHH----HhCCCC---
Confidence                    11134589999999999999998875   899999999998755321100 00111111    011111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                        .++...+|+|.++++++.....  .| .+.+.+
T Consensus       217 --~R~g~pediA~~v~fL~S~~a~~iTG~~i~VDG  249 (255)
T 4g81_D          217 --QRWGRPEELIGTAIFLSSKASDYINGQIIYVDG  249 (255)
T ss_dssp             --CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             --CCCcCHHHHHHHHHHHhCchhCCCcCCEEEECC
Confidence              4578899999999999864332  33 455544

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.82  E-value=3.1e-21  Score=170.29  Aligned_cols=174  Identities=13%  Similarity=0.093  Sum_probs=126.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-------eEEEEEcCCC--cHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-------AVRATVRDPD--NKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~--~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      +|||+||||+||||++++..|+++|+       +|.++++.+.  .... ...+..     ..+.++ +|+.+.+++.++
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~-----~~~~~~-~di~~~~~~~~a   77 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELED-----CAFPLL-AGLEATDDPKVA   77 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHT-----TTCTTE-EEEEEESCHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhc-----cccccc-CCeEeccChHHH
Confidence            47999999999999999999999886       8988887542  1111 112211     111223 578777788888


Q ss_pred             hCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcC-CCCCCchhh
Q 040253           75 IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYD-ETSWSDLDF  152 (338)
Q Consensus        75 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~-e~~~~~~~~  152 (338)
                      ++++|+|||+||...... ....++++.|+.++.++++++++.+ ...+++++|+.....      .+.. |..      
T Consensus        78 ~~~~D~Vih~Ag~~~~~~-~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~------~~~~~~~~------  144 (327)
T 1y7t_A           78 FKDADYALLVGAAPRKAG-MERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTN------ALIAYKNA------  144 (327)
T ss_dssp             TTTCSEEEECCCCCCCTT-CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH------HHHHHHTC------
T ss_pred             hCCCCEEEECCCcCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhh------HHHHHHHc------
Confidence            999999999999765433 3345789999999999999999874 345788888753100      0111 111      


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                        +..+|.+.|+.+|+.+|++...+++.+|++.+++|++++|||+..
T Consensus       145 --~~~~p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~  189 (327)
T 1y7t_A          145 --PGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS  189 (327)
T ss_dssp             --TTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred             --CCCChhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence              012356689999999999999999989999999999999998754

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.82  E-value=6e-20  Score=170.05  Aligned_cols=221  Identities=15%  Similarity=0.125  Sum_probs=154.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcH---HHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCC-
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNK---KKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRG-   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-   77 (338)
                      ..++||||||+|+||.+++++|+++|+ +|++++|+....   ..+ ..+...   ..++.++.+|++|.+++.+++++ 
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~---g~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL---GARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT---TCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc---CCEEEEEEeCCCCHHHHHHHHHHH
Confidence            368999999999999999999999998 499999976432   222 112211   25789999999999988888764 


Q ss_pred             -----ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           78 -----CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        78 -----~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                           +|+|||+||.....     ..+.....++.|+.++.++.+++...+ .++||++||.+.+.  ..          
T Consensus       302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~-~~~~V~~SS~a~~~--g~----------  368 (486)
T 2fr1_A          302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFSSFASAF--GA----------  368 (486)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEEEHHHHT--CC----------
T ss_pred             HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCC-CCEEEEEcChHhcC--CC----------
Confidence                 59999999965422     112334677889999999999998877 78999999975542  11          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                                .....|+.+|...+.+.+++.. .|+++++++||.+.+++.....   .   ..       .+. .....
T Consensus       369 ----------~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~~~---~---~~-------~~~-~~g~~  423 (486)
T 2fr1_A          369 ----------PGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEGP---V---AD-------RFR-RHGVI  423 (486)
T ss_dssp             ----------TTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------------CT-TTTEE
T ss_pred             ----------CCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccchh---H---HH-------HHH-hcCCC
Confidence                      1235799999999998877654 5999999999998876422110   0   00       000 01146


Q ss_pred             cccHHHHHHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHH
Q 040253          228 FVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLRE  269 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~  269 (338)
                      +++.+|+++++..++.....  .+.+.  .+.+..+...+..
T Consensus       424 ~i~~e~~a~~l~~~l~~~~~--~~~v~--~~d~~~~~~~~~~  461 (486)
T 2fr1_A          424 EMPPETACRALQNALDRAEV--CPIVI--DVRWDRFLLAYTA  461 (486)
T ss_dssp             CBCHHHHHHHHHHHHHTTCS--SCEEC--EECHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHHhCCCC--eEEEE--eCCHHHHhhhhcc
Confidence            89999999999999987532  22232  2567777665544

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.82  E-value=4.7e-19  Score=150.84  Aligned_cols=219  Identities=16%  Similarity=0.119  Sum_probs=153.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||..+++.|++.|.+|.+.+|+.+..++......     .++..+.+|++|++++.++++       
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~G  102 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG-----GGAVGIQADSANLAELDRLYEKVKAEAG  102 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999999999999998766554433221     467889999999998887664       


Q ss_pred             CccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           77 GCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        77 ~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      ++|++||+||...     ....+.++..+++|+.++..+.+++...- +..++|++||.....                 
T Consensus       103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~-----------------  165 (273)
T 4fgs_A          103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST-----------------  165 (273)
T ss_dssp             CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS-----------------
T ss_pred             CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc-----------------
Confidence            6999999998543     22234456789999999999998876542 235899999976542                 


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh---HHHhhhhcccCCCCCCCCC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS---LITALSPITRNEAHYPIIK  224 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  224 (338)
                           +.+....|+.+|.....+.+.++.++   ||++..|-||.+-.+.........   ........... .++    
T Consensus       166 -----~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~-~Pl----  235 (273)
T 4fgs_A          166 -----GTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQ-VPM----  235 (273)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHH-STT----
T ss_pred             -----CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhc-CCC----
Confidence                 11134589999999999999999886   799999999998766432211110   00111111111 112    


Q ss_pred             CCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                       .++...+|+|.++++++.....  .| .+.+.+
T Consensus       236 -gR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDG  268 (273)
T 4fgs_A          236 -GRVGRAEEVAAAALFLASDDSSFVTGAELFVDG  268 (273)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHhCchhcCccCCeEeECc
Confidence             4578899999999999965332  34 444533

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.81  E-value=1e-19  Score=154.20  Aligned_cols=210  Identities=13%  Similarity=0.088  Sum_probs=140.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-E--cCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRAT-V--RDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      +|+++||||+|+||.+++++|+++|++|+++ +  |+.+.........      .+.     |+.|.+++.++++     
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~------~~~-----~~~~~~~v~~~~~~~~~~   69 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN------PGT-----IALAEQKPERLVDATLQH   69 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS------TTE-----EECCCCCGGGHHHHHGGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh------CCC-----cccCHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999998 5  8765544433211      112     2235666555443     


Q ss_pred             --CccEEEEecccCCC---C-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCc
Q 040253           77 --GCTGVFHLATPMDF---E-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 --~~d~vi~~a~~~~~---~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                        ++|++||+||....   .     ..+..+..+++|+.++.++++++.    +.+ ..++|++||...+.  .      
T Consensus        70 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~--~------  140 (244)
T 1zmo_A           70 GEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG-GASVIFITSSVGKK--P------  140 (244)
T ss_dssp             SSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS--C------
T ss_pred             cCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECChhhCC--C------
Confidence              68999999986432   1     112334678999999999888774    344 57999999987663  1      


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHH--HhhhhcccCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLI--TALSPITRNE  217 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~--~~~~~~~~~~  217 (338)
                                    ..+...|+.+|.+.+.+.+.++.++   |+++++++||.+..+....  ...+.  ..........
T Consensus       141 --------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~~~  204 (244)
T 1zmo_A          141 --------------LAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFP--TSDWENNPELRERVDRD  204 (244)
T ss_dssp             --------------CTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBC--HHHHHHCHHHHHHHHHH
T ss_pred             --------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccc--cccccchHHHHHHHhcC
Confidence                          1134589999999999999988774   8999999999887654200  01110  0000000000


Q ss_pred             CCCCCCCCCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          218 AHYPIIKQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       218 ~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                      ...     ..+...+|+|++++.++.....  .| .+.+.+
T Consensus       205 ~p~-----~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdg  240 (244)
T 1zmo_A          205 VPL-----GRLGRPDEMGALITFLASRRAAPIVGQFFAFTG  240 (244)
T ss_dssp             CTT-----CSCBCHHHHHHHHHHHHTTTTGGGTTCEEEEST
T ss_pred             CCC-----CCCcCHHHHHHHHHHHcCccccCccCCEEEeCC
Confidence            111     3578999999999999975432  34 445544

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.81  E-value=1.1e-18  Score=145.77  Aligned_cols=209  Identities=16%  Similarity=0.123  Sum_probs=149.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      .+|+++||||++-||..+++.|++.|.+|.+.+|+... +..+.+...   ..++..+.+|++|++++.++++  ++|++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~-~~~~~~~~~---g~~~~~~~~Dv~d~~~v~~~~~~g~iDiL   83 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPD-ETLDIIAKD---GGNASALLIDFADPLAAKDSFTDAGFDIL   83 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCH-HHHHHHHHT---TCCEEEEECCTTSTTTTTTSSTTTCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHH-HHHHHHHHh---CCcEEEEEccCCCHHHHHHHHHhCCCCEE
Confidence            47999999999999999999999999999999997653 222223222   2578999999999999888876  69999


Q ss_pred             EEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhh
Q 040253           82 FHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDF  152 (338)
Q Consensus        82 i~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~  152 (338)
                      ||+||....     ...+.++..+++|+.++..+.+++.    +.++-.++|++||.....                   
T Consensus        84 VNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~-------------------  144 (247)
T 4hp8_A           84 VNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ-------------------  144 (247)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-------------------
T ss_pred             EECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC-------------------
Confidence            999986442     2234456789999999998887643    233246899999976542                   


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccc
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFV  229 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  229 (338)
                         .......|+.||.....+.+.++.++   ||++..|-||.+-.|.........  ...... ....++     .++-
T Consensus       145 ---g~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~--~~~~~~-~~~~Pl-----gR~g  213 (247)
T 4hp8_A          145 ---GGIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADA--ARNKAI-LERIPA-----GRWG  213 (247)
T ss_dssp             ---CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSH--HHHHHH-HTTCTT-----SSCB
T ss_pred             ---CCCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCH--HHHHHH-HhCCCC-----CCCc
Confidence               11134589999999999999998886   899999999988655321100000  000101 111122     4578


Q ss_pred             cHHHHHHHHHHhhcCCC
Q 040253          230 HLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~  246 (338)
                      ..+|+|.++++++....
T Consensus       214 ~peeiA~~v~fLaSd~a  230 (247)
T 4hp8_A          214 HSEDIAGAAVFLSSAAA  230 (247)
T ss_dssp             CTHHHHHHHHHHTSGGG
T ss_pred             CHHHHHHHHHHHhCchh
Confidence            89999999999986543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.81  E-value=1e-18  Score=148.83  Aligned_cols=213  Identities=16%  Similarity=0.085  Sum_probs=149.8

Q ss_pred             CCCCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            2 GSIAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         2 ~~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      +..+|+++||||+|  -||.+++++|++.|++|.+.+|+.+..+......... ...++..+.+|++|++++.++++   
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~~~   81 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL-NQPEAHLYQIDVQSDEEVINGFEQIG   81 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG-TCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            34689999999887  8999999999999999999999987776665544321 12478899999999988877653   


Q ss_pred             ----CccEEEEecccCCCC------CCC---ccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCc
Q 040253           77 ----GCTGVFHLATPMDFE------SKD---PENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~------~~~---~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                          ++|++||+||.....      .+.   .....+++|+.+...+..++.... ...++|++||.....         
T Consensus        82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~---------  152 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF---------  152 (256)
T ss_dssp             HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS---------
T ss_pred             HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc---------
Confidence                799999999854311      011   122345778888877777665432 246899999975442         


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAH  219 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  219 (338)
                                   +.+....|+.+|...+.+.+.++.++   |++++.|.||.+-.+.........  ......... .+
T Consensus       153 -------------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~--~~~~~~~~~-~P  216 (256)
T 4fs3_A          153 -------------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFN--TILKEIKER-AP  216 (256)
T ss_dssp             -------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHH--HHHHHHHHH-ST
T ss_pred             -------------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCH--HHHHHHHhc-CC
Confidence                         11234589999999999999998875   899999999988765433221111  111111111 11


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      +     .++...+|+|+++++++...
T Consensus       217 l-----~R~g~peevA~~v~fL~Sd~  237 (256)
T 4fs3_A          217 L-----KRNVDQVEVGKTAAYLLSDL  237 (256)
T ss_dssp             T-----SSCCCHHHHHHHHHHHHSGG
T ss_pred             C-----CCCcCHHHHHHHHHHHhCch
Confidence            2     45788999999999998643

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.81  E-value=7.2e-20  Score=161.55  Aligned_cols=220  Identities=17%  Similarity=0.147  Sum_probs=148.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhc----CCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE----LPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      +|+||||||+|+||.+++++|+++|++|++++|+..+.........    ......++.++.+|++|.+++.++++    
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   81 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence            5789999999999999999999999999988886544332222111    01112478999999999998888776    


Q ss_pred             -CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||.....     ..+..+..+++|+.++.++++++    ++.+ ..+||++||...+.  .          
T Consensus        82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~-~g~IV~isS~~~~~--~----------  148 (327)
T 1jtv_A           82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLM--G----------  148 (327)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTS--C----------
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEECCccccc--C----------
Confidence             489999999864321     12234578899999999999885    3344 57999999986653  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH---cCccEEEEcCCceeCCCCCCCCChh----------HHHhhhhc
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPS----------LITALSPI  213 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~~~~~~ilRp~~v~G~~~~~~~~~~----------~~~~~~~~  213 (338)
                                ......|+.+|...+.+.+.++.+   +|+++++++||.|..+.........          ........
T Consensus       149 ----------~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (327)
T 1jtv_A          149 ----------LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQY  218 (327)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHH
T ss_pred             ----------CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChHHhhhhhcchhhhccCCHHHHHHHHHH
Confidence                      113458999999999999999886   5899999999999876532211100          00000000


Q ss_pred             ccC-CCCCCCCCCCc-cccHHHHHHHHHHhhcCCCCCCceE
Q 040253          214 TRN-EAHYPIIKQGQ-FVHLDDLCSAHIFLFEHPNAKGRYI  252 (338)
Q Consensus       214 ~~~-~~~~~~~~~~~-~i~v~D~a~~~~~~l~~~~~~~~~~  252 (338)
                      ... ...+     .. .+..+|+|++++.++..+.....|.
T Consensus       219 ~~~~~~~~-----~~~~~~pedvA~~i~~l~~~~~~~~~~~  254 (327)
T 1jtv_A          219 LAHSKQVF-----REAAQNPEEVAEVFLTALRAPKPTLRYF  254 (327)
T ss_dssp             HHHHHHHH-----HHHCBCHHHHHHHHHHHHHCSSCCSEEE
T ss_pred             HHHHHHhh-----hhcCCCHHHHHHHHHHHHcCCCCCeEEE
Confidence            000 0000     11 2589999999999998765444454

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.80  E-value=4.4e-19  Score=155.84  Aligned_cols=265  Identities=15%  Similarity=0.100  Sum_probs=162.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc---------CCCcHHHHH-HHhcCCCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVR---------DPDNKKKVK-HLLELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r---------~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|+|+||||+|+||.+++++|+++|++|++.+|         +.+...... .+....   .   ...+|+.|.+++.+
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~---~---~~~~D~~~~~~~~~   81 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG---G---KAVANYDSVEAGEK   81 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT---C---EEEEECCCGGGHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhC---C---eEEEeCCCHHHHHH
Confidence            4589999999999999999999999999999765         333322221 121110   1   23479999887666


Q ss_pred             hh-------CCccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCC
Q 040253           74 PI-------RGCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEH  137 (338)
Q Consensus        74 ~~-------~~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~  137 (338)
                      ++       .++|++||+||.....     ..+..+..+++|+.++.++.+++    ++.+ ..++|++||.....  ..
T Consensus        82 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vsS~~~~~--~~  158 (319)
T 1gz6_A           82 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASGIY--GN  158 (319)
T ss_dssp             HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH--CC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhcc--CC
Confidence            54       3799999999965422     12234567899999998888876    3344 57999999975432  10


Q ss_pred             CCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcc
Q 040253          138 RKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPIT  214 (338)
Q Consensus       138 ~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  214 (338)
                                          .+...|+.+|.+.+.+.+.++.++   |+++++++||.+ .+.     ....   .    
T Consensus       159 --------------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~-----~~~~---~----  205 (319)
T 1gz6_A          159 --------------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRM-----TETV---M----  205 (319)
T ss_dssp             --------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STT-----TGGG---S----
T ss_pred             --------------------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccc-----cccc---C----
Confidence                                134589999999999999998874   899999999876 221     1000   0    


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCceEEecCCCCHHHHHHHHHHhCCCCCCCC-CCCCccccccccc
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGRYICSSHPATILELAKFLREKYPEFNVPT-EFEDVDENMKNML  291 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~  291 (338)
                        +     ....+++..+|+|.++++++..+.  .+..|++++.-.....    +.+..+. ..+. .....+......+
T Consensus       206 --~-----~~~~~~~~p~dvA~~~~~l~s~~~~~tG~~~~v~GG~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~lw  273 (319)
T 1gz6_A          206 --P-----EDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLR----WERTLGA-IVRKRNQPMTPEAVRDNW  273 (319)
T ss_dssp             --C-----HHHHHHSCGGGTHHHHHHHTSTTCCCCSCEEEEETTEEEEEE----EEECCCE-ECCBTTBCCCHHHHHHTH
T ss_pred             --C-----hhhhccCCHHHHHHHHHHHhCchhhcCCCEEEECCCeEEEEe----eeeccce-eccCCCCCCCHHHHHHHH
Confidence              0     000235789999999999987542  2335555443210000    0000010 0000 0001111122222


Q ss_pred             cchhhhhhcCCcccccHHHHHHHHHHHHHHcCC
Q 040253          292 FSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKGL  324 (338)
Q Consensus       292 ~~~~~~~~lg~~~~~~~~~~i~~~~~~~~~~~~  324 (338)
                      ..+..+  .|+.....+.+.+.++++.+.+...
T Consensus       274 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  304 (319)
T 1gz6_A          274 VKICDF--SNASKPKSIQESTGGIIEVLHKIDS  304 (319)
T ss_dssp             HHHTCC--TTCBCCCCHHHHHHHHHHHHHHHC-
T ss_pred             HHhhcc--ccccCCCchHHHHHHHHHHHhhccc
Confidence            211111  4666556799999999887765543

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.80  E-value=1.4e-19  Score=168.11  Aligned_cols=223  Identities=17%  Similarity=0.109  Sum_probs=157.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCc---HHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCC-
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDN---KKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRG-   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-   77 (338)
                      ..++||||||+|+||.+++++|.++|+ +|++++|+...   ...+ ..+..   ...++.++.+|++|.+++.+++++ 
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~---~g~~v~~~~~Dvtd~~~v~~~~~~~  334 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRG---HGCEVVHAACDVAERDALAALVTAY  334 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHT---TTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHh---cCCEEEEEEeCCCCHHHHHHHHhcC
Confidence            358999999999999999999999998 68999997643   2222 22222   125789999999999999998864 


Q ss_pred             -ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           78 -CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        78 -~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                       +|+|||+||.....     ..+..+..+..|+.++.++.+++... + .++||++||...+.  ..             
T Consensus       335 ~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~-~~~~V~~SS~a~~~--g~-------------  398 (511)
T 2z5l_A          335 PPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKG-LDAFVLFSSVTGTW--GN-------------  398 (511)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTT-CCCEEEEEEGGGTT--CC-------------
T ss_pred             CCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccC-CCEEEEEeCHHhcC--CC-------------
Confidence             99999999965422     11223456788999999999998776 5 78999999975432  11             


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcccc
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVH  230 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  230 (338)
                             .....|+.+|...+.+++.+. ..|+++++++||.+.+.+...   ......+.   .        .....++
T Consensus       399 -------~g~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~~---~~~~~~~~---~--------~g~~~l~  456 (511)
T 2z5l_A          399 -------AGQGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMAA---GAGEESLS---R--------RGLRAMD  456 (511)
T ss_dssp             -------TTBHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCCC---CHHHHHHH---H--------HTBCCBC
T ss_pred             -------CCCHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCcccc---cccHHHHH---h--------cCCCCCC
Confidence                   134589999999999988764 559999999998874332211   11111110   0        1145789


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhC
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKY  271 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~  271 (338)
                      .+|+++++..++.++..  .+.+.  .+.+..+...+....
T Consensus       457 ~e~~a~~l~~al~~~~~--~v~v~--~~d~~~~~~~~~~~~  493 (511)
T 2z5l_A          457 PDAAVDALLGAMGRNDV--CVTVV--DVDWERFAPATNAIR  493 (511)
T ss_dssp             HHHHHHHHHHHHHHTCS--EEEEC--CBCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCC--EEEEE--eCCHHHHHhhhcccC
Confidence            99999999999986532  22222  356777777666543

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.80  E-value=8e-19  Score=161.03  Aligned_cols=214  Identities=15%  Similarity=0.057  Sum_probs=148.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ..++++||||+|.||.+++++|+++|++|++++|+... +.+......    .++.++.+|++|.+++.++++       
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~----~~~~~~~~Dvtd~~~v~~~~~~~~~~~g  286 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADK----VGGTALTLDVTADDAVDKITAHVTEHHG  286 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHH----HTCEEEECCTTSTTHHHHHHHHHHHHST
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHH----cCCeEEEEecCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999999999999986433 222222111    245789999999998887764       


Q ss_pred             C-ccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC----CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 G-CTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA----KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~-~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      + +|+|||+||.....     ..+..+..+++|+.++.++.+++...    + ..+||++||...+.             
T Consensus       287 ~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~-~g~iV~iSS~a~~~-------------  352 (454)
T 3u0b_A          287 GKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGE-GGRVIGLSSMAGIA-------------  352 (454)
T ss_dssp             TCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCT-TCEEEEECCHHHHH-------------
T ss_pred             CCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEEeChHhCC-------------
Confidence            3 99999999965422     22234467899999999999998765    3 57999999987653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               .......|+.+|...+.+.+.++.++   |++++++.||.+..+..... .........   . ....   
T Consensus       353 ---------g~~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~---~-~~~l---  415 (454)
T 3u0b_A          353 ---------GNRGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI-PLATREVGR---R-LNSL---  415 (454)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-----------CHHHH---H-SBTT---
T ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc-chhhHHHHH---h-hccc---
Confidence                     11245689999999998888887664   89999999999977643211 100000000   0 0011   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                        .++...+|+++++.+++....  ..| .+++.+
T Consensus       416 --~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdG  448 (454)
T 3u0b_A          416 --FQGGQPVDVAELIAYFASPASNAVTGNTIRVCG  448 (454)
T ss_dssp             --SSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESS
T ss_pred             --cCCCCHHHHHHHHHHHhCCccCCCCCcEEEECC
Confidence              346789999999999987433  233 556644

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.80  E-value=2.2e-19  Score=153.56  Aligned_cols=210  Identities=18%  Similarity=0.172  Sum_probs=146.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHH---CCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLE---RGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      .+|+++||||+|+||.+++++|++   .|++|++++|+.+................++.++.+|++|++++.++++    
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            368899999999999999999999   8999999999876544433221100001468999999999988776653    


Q ss_pred             -----Ccc--EEEEecccCCC--------CCCCccchhhhhhhHHHHHHHHHHHhCC-----CccEEEEecCceeeeccC
Q 040253           77 -----GCT--GVFHLATPMDF--------ESKDPENEVIRPTINGMVSIMRACKNAK-----TVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        77 -----~~d--~vi~~a~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~Ss~~v~~~~~  136 (338)
                           ++|  ++||+||....        ...+..+..+++|+.++.++++++...-     ...++|++||...+.   
T Consensus        85 ~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~---  161 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ---  161 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS---
T ss_pred             ccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC---
Confidence                 468  99999996432        1223345688999999999999886432     146899999987663   


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCCC----ChhHHHhhh
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSSM----PPSLITALS  211 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~  211 (338)
                                         +..+...|+.+|.+.+.+.+.++.++ +++++++.||.+-.+......    .........
T Consensus       162 -------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~  222 (259)
T 1oaa_A          162 -------------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQ  222 (259)
T ss_dssp             -------------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHH
T ss_pred             -------------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHHHH
Confidence                               11245689999999999999999887 589999999887543210000    000000000


Q ss_pred             hcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          212 PITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                         .. ..     ...+...+|+|++++.++..
T Consensus       223 ---~~-~p-----~~~~~~p~dvA~~v~~l~~~  246 (259)
T 1oaa_A          223 ---KL-KS-----DGALVDCGTSAQKLLGLLQK  246 (259)
T ss_dssp             ---HH-HH-----TTCSBCHHHHHHHHHHHHHH
T ss_pred             ---Hh-hh-----cCCcCCHHHHHHHHHHHHhh
Confidence               00 00     13578999999999999864

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.79  E-value=7e-19  Score=151.18  Aligned_cols=219  Identities=12%  Similarity=0.003  Sum_probs=149.3

Q ss_pred             CCcEEEEeCC--chhhHHHHHHHHHHCCCeEEEEEcCCCcH-HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            4 IAETVCVTGA--SGFIGSWLIMRLLERGYAVRATVRDPDNK-KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         4 ~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      .+|+++||||  +|+||.+++++|+++|++|++++|+.+.. +.+...  .   ..++.++.+|++|++++.++++    
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~---~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDR--L---PAKAPLLELDVQNEEHLASLAGRVTE   80 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTT--S---SSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHh--c---CCCceEEEccCCCHHHHHHHHHHHHH
Confidence            3589999999  99999999999999999999999986542 222211  1   1467889999999998877765    


Q ss_pred             ------CccEEEEecccCCC----------CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCC
Q 040253           77 ------GCTGVFHLATPMDF----------ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRK  139 (338)
Q Consensus        77 ------~~d~vi~~a~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~  139 (338)
                            ++|++||+||....          ...+..+..+++|+.++.++++++...- ...++|++||...++      
T Consensus        81 ~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~------  154 (269)
T 2h7i_A           81 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA------  154 (269)
T ss_dssp             HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC------
T ss_pred             HhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc------
Confidence                  79999999986431          1112234578899999999999987642 135899999865432      


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCC----CCChhHH----H
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTS----SMPPSLI----T  208 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~----~~~~~~~----~  208 (338)
                                       ......|+.+|...+.+.+.++.++   |+++++++||.+..+....    .......    .
T Consensus       155 -----------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~  217 (269)
T 2h7i_A          155 -----------------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQL  217 (269)
T ss_dssp             -----------------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHH
T ss_pred             -----------------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHH
Confidence                             0134589999999999999988775   8999999999886542100    0000000    0


Q ss_pred             hhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCC--CC-ceEEec
Q 040253          209 ALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSS  255 (338)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~  255 (338)
                      ........ .+.  +  +++...+|+|+++++++.....  .| .+.+.+
T Consensus       218 ~~~~~~~~-~p~--~--rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdG  262 (269)
T 2h7i_A          218 LEEGWDQR-API--G--WNMKDATPVAKTVCALLSDWLPATTGDIIYADG  262 (269)
T ss_dssp             HHHHHHHH-CTT--C--CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEEST
T ss_pred             HHHhhhcc-CCc--c--cCCCCHHHHHHHHHHHhCchhccCcceEEEecC
Confidence            00000000 111  0  2477899999999999975332  34 345543

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.78  E-value=2.2e-18  Score=146.45  Aligned_cols=213  Identities=14%  Similarity=0.087  Sum_probs=146.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.+++++|++.|++|++.+|+.....            .....+.+|++|.+++.++++       
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~------------~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   77 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGL------------PEELFVEADLTTKEGCAIVAEATRQRLG   77 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTS------------CTTTEEECCTTSHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCC------------CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3589999999999999999999999999999999754311            233578899999988777653       


Q ss_pred             CccEEEEecccCCC-------CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDF-------ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|++||+||....       ...+.++..+++|+.++..+.+++.    +.+ ..++|++||.....  .         
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Iv~isS~~~~~--~---------  145 (261)
T 4h15_A           78 GVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG-SGVVVHVTSIQRVL--P---------  145 (261)
T ss_dssp             SCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--C---------
T ss_pred             CCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC-CceEEEEEehhhcc--C---------
Confidence            69999999985331       1123345678999999988877653    344 57899999976542  0         


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC---------CC-hhHHHhhhh
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS---------MP-PSLITALSP  212 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~---------~~-~~~~~~~~~  212 (338)
                                .+.....|+.+|...+.+.+.++.++   |+++++|.||.+-.+.....         .. .........
T Consensus       146 ----------~~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (261)
T 4h15_A          146 ----------LPESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMD  215 (261)
T ss_dssp             ----------CTTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             ----------CCCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHH
Confidence                      00123579999999999999998875   89999999998864421000         00 000000000


Q ss_pred             cccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCC--CC-ceEEecC
Q 040253          213 ITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICSSH  256 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~~~  256 (338)
                      . ....++     .++...+|+|+++++++.....  .| .+.+.+.
T Consensus       216 ~-~~~~Pl-----gR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG  256 (261)
T 4h15_A          216 G-LGGIPL-----GRPAKPEEVANLIAFLASDRAASITGAEYTIDGG  256 (261)
T ss_dssp             H-TTCCTT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             H-hcCCCC-----CCCcCHHHHHHHHHHHhCchhcCccCcEEEECCc
Confidence            0 011112     4688999999999999864332  33 5566543

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.77  E-value=2.5e-18  Score=149.92  Aligned_cols=225  Identities=14%  Similarity=0.028  Sum_probs=142.3

Q ss_pred             CCCCcEEEEeCCc--hhhHHHHHHHHHHCCCeEEEEEcCCCcH--------HHHHHHhcCCCCC--CcEEEEecc-----
Q 040253            2 GSIAETVCVTGAS--GFIGSWLIMRLLERGYAVRATVRDPDNK--------KKVKHLLELPKAS--THLTLWKAD-----   64 (338)
Q Consensus         2 ~~~~~~ilVtGat--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~~~~--~~~~~~~~D-----   64 (338)
                      ...+|+++||||+  |+||.+++++|+++|++|++++|++...        ..++.+..+....  .....+.+|     
T Consensus         5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (297)
T 1d7o_A            5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN   84 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred             ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence            3446899999999  9999999999999999999998752100        0011111111000  012333332     


Q ss_pred             ---c----CC--------CCCchhhhC-------CccEEEEecccCC-------CCCCCccchhhhhhhHHHHHHHHHHH
Q 040253           65 ---L----AE--------EGNFDEPIR-------GCTGVFHLATPMD-------FESKDPENEVIRPTINGMVSIMRACK  115 (338)
Q Consensus        65 ---l----~d--------~~~~~~~~~-------~~d~vi~~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~  115 (338)
                         +    +|        .+++.++++       ++|++||+||...       ....+..+..+++|+.++.++++++.
T Consensus        85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  164 (297)
T 1d7o_A           85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL  164 (297)
T ss_dssp             GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred             hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence               2    22        556665543       6999999998432       11122345688999999999999987


Q ss_pred             hCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC-chHHHHHHHHHHHHHHHHHH----cCccEEEEc
Q 040253          116 NAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG-WMYFVSKTLAEQAAWKFAEE----NNIDFISII  189 (338)
Q Consensus       116 ~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilR  189 (338)
                      ..- ...++|++||...+.  ..                    +.. ..|+.+|.+.+.+.+.++.+    +|+++++++
T Consensus       165 ~~m~~~g~iv~isS~~~~~--~~--------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~  222 (297)
T 1d7o_A          165 PIMNPGGASISLTYIASER--II--------------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTIS  222 (297)
T ss_dssp             GGEEEEEEEEEEECGGGTS--CC--------------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             HHhccCceEEEEecccccc--CC--------------------CCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEe
Confidence            652 126899999976542  10                    122 37999999999999988866    589999999


Q ss_pred             CCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEecC
Q 040253          190 PSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSSH  256 (338)
Q Consensus       190 p~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~~  256 (338)
                      ||.+.++..... . ............ ..+     ..+...+|+|+++++++....  ..| .+++.+.
T Consensus       223 PG~v~T~~~~~~-~-~~~~~~~~~~~~-~p~-----~r~~~pedvA~~v~~l~s~~~~~itG~~i~vdgG  284 (297)
T 1d7o_A          223 AGPLGSRAAKAI-G-FIDTMIEYSYNN-API-----QKTLTADEVGNAAAFLVSPLASAITGATIYVDNG  284 (297)
T ss_dssp             ECCCBCCCSSCC-S-HHHHHHHHHHHH-SSS-----CCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred             ccccccchhhhc-c-ccHHHHHHhhcc-CCC-----CCCCCHHHHHHHHHHHhCccccCCCCCEEEECCC
Confidence            999998764321 1 001111100011 111     347789999999999986432  234 5566543

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.75  E-value=7.4e-18  Score=155.52  Aligned_cols=202  Identities=17%  Similarity=0.122  Sum_probs=146.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCc---HHHHH-HHhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDN---KKKVK-HLLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      ++++|||||+|.||.+++++|+++|+ +|++++|+...   ...+. .+..   ...++.++.+|++|.+++.++++   
T Consensus       239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~---~g~~v~~~~~Dvtd~~~v~~~~~~i~  315 (496)
T 3mje_A          239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQ---LGVRVTIAACDAADREALAALLAELP  315 (496)
T ss_dssp             CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHTCC
T ss_pred             CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHh---cCCeEEEEEccCCCHHHHHHHHHHHH
Confidence            48999999999999999999999998 78888886433   22221 2222   12578999999999998888774   


Q ss_pred             ---CccEEEEecccC-CCC-----CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 ---GCTGVFHLATPM-DFE-----SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ---~~d~vi~~a~~~-~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                         ++|+|||+||.. ...     ..+..+..++.|+.++.++.+++...+ ..+||++||.+.+.  ..          
T Consensus       316 ~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~-~~~iV~~SS~a~~~--g~----------  382 (496)
T 3mje_A          316 EDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD-LDAFVLFSSGAAVW--GS----------  382 (496)
T ss_dssp             TTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC-CSEEEEEEEHHHHT--TC----------
T ss_pred             HhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC-CCEEEEEeChHhcC--CC----------
Confidence               489999999975 321     112234678999999999999999887 78999999976552  11          


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                                .....|+.+|...+.+.+++. ..|+++++|.||.+.+.+...... .... +   ...        ...
T Consensus       383 ----------~g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~gm~~~~~-~~~~-l---~~~--------g~~  438 (496)
T 3mje_A          383 ----------GGQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVGMATDPE-VHDR-L---VRQ--------GVL  438 (496)
T ss_dssp             ----------TTCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSCC-------CHH-H---HHT--------TEE
T ss_pred             ----------CCcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCccccChH-HHHH-H---Hhc--------CCC
Confidence                      134589999999999888765 459999999999887665332110 0000 0   011        134


Q ss_pred             cccHHHHHHHHHHhhcCCC
Q 040253          228 FVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~  246 (338)
                      .+..++.++++..++..+.
T Consensus       439 ~l~pe~~~~~l~~~l~~~~  457 (496)
T 3mje_A          439 AMEPEHALGALDQMLENDD  457 (496)
T ss_dssp             EECHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHcCCC
Confidence            6788999999999998753

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.71  E-value=9.2e-17  Score=141.39  Aligned_cols=228  Identities=12%  Similarity=0.003  Sum_probs=121.5

Q ss_pred             CCcEEEEeCC--chhhHHHHHHHHHHCCCeEEEEEcCC-----------CcHHHHHHH--------hc-CCCCCC---cE
Q 040253            4 IAETVCVTGA--SGFIGSWLIMRLLERGYAVRATVRDP-----------DNKKKVKHL--------LE-LPKAST---HL   58 (338)
Q Consensus         4 ~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~~~~--------~~-~~~~~~---~~   58 (338)
                      .+|++|||||  +|.||.+++++|+++|++|++++|++           ......+.+        .. ......   ..
T Consensus         8 ~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (319)
T 2ptg_A            8 RGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVFD   87 (319)
T ss_dssp             TTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CCS
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccccc
Confidence            3578999999  89999999999999999999998642           111110000        00 000000   02


Q ss_pred             EEEecc------------cCC--------CCCchhhhC-------CccEEEEecccCC-------CCCCCccchhhhhhh
Q 040253           59 TLWKAD------------LAE--------EGNFDEPIR-------GCTGVFHLATPMD-------FESKDPENEVIRPTI  104 (338)
Q Consensus        59 ~~~~~D------------l~d--------~~~~~~~~~-------~~d~vi~~a~~~~-------~~~~~~~~~~~~~n~  104 (338)
                      ..+.+|            ++|        .+++.++++       ++|++||+||...       ....+..+..+++|+
T Consensus        88 ~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN~  167 (319)
T 2ptg_A           88 KIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSSS  167 (319)
T ss_dssp             EEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHhh
Confidence            444433            333        345655543       6999999998531       111223456789999


Q ss_pred             HHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC-chHHHHHHHHHHHHHHHHHH--
Q 040253          105 NGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG-WMYFVSKTLAEQAAWKFAEE--  180 (338)
Q Consensus       105 ~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~--  180 (338)
                      .++.++++++...- ...++|++||...+.  .                    .+.. ..|+.+|.+.+.+.+.++.+  
T Consensus       168 ~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~--~--------------------~~~~~~~Y~asKaal~~l~~~la~el~  225 (319)
T 2ptg_A          168 YSFVSLLQHFLPLMKEGGSALALSYIASEK--V--------------------IPGYGGGMSSAKAALESDCRTLAFEAG  225 (319)
T ss_dssp             HHHHHHHHHHGGGEEEEEEEEEEEECC----------------------------------------THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCceEEEEecccccc--c--------------------cCccchhhHHHHHHHHHHHHHHHHHhc
Confidence            99999999887652 126899999976553  0                    0112 37999999999998888766  


Q ss_pred             --cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          181 --NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       181 --~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                        +|+++++|+||.+..+....................  .........+...+|+|+++++++....  ..| .+.+.+
T Consensus       226 ~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~vdG  303 (319)
T 2ptg_A          226 RARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDY--SEANAPLQKELESDDVGRAALFLLSPLARAVTGATLYVDN  303 (319)
T ss_dssp             HHHCCEEEEEEECCCC---------------------------------CCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             cccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHH--HhccCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEECC
Confidence              489999999999876542110000000000000000  0000001347789999999999987532  244 445543

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.70  E-value=1.7e-16  Score=151.08  Aligned_cols=195  Identities=17%  Similarity=0.085  Sum_probs=130.9

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc---------CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVR---------DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      ..+|+++||||+|.||.+++++|+++|++|++++|         +..............  ...   ..+|+.|.+++.+
T Consensus        17 l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~--~~~---~~~D~~d~~~~~~   91 (613)
T 3oml_A           17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA--GGE---AVADYNSVIDGAK   91 (613)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT--TCC---EEECCCCGGGHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh--CCe---EEEEeCCHHHHHH
Confidence            35789999999999999999999999999999987         333333332211111  011   2479998887776


Q ss_pred             hhC-------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCC
Q 040253           74 PIR-------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEH  137 (338)
Q Consensus        74 ~~~-------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~  137 (338)
                      +++       ++|++||+||.....     ..+..+..+++|+.++.++.+++    ++.+ ..++|++||.+.+.  . 
T Consensus        92 ~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~-~g~IV~isS~a~~~--~-  167 (613)
T 3oml_A           92 VIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQN-YGRIIMTSSNSGIY--G-  167 (613)
T ss_dssp             HHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CEEEEEECCHHHHH--C-
T ss_pred             HHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCHHHcC--C-
Confidence            664       689999999965421     12334578899999999998887    4444 57999999976553  1 


Q ss_pred             CCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcc
Q 040253          138 RKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPIT  214 (338)
Q Consensus       138 ~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  214 (338)
                                         ......|+.+|.+.+.+.+.++.++   |++++++.|+.+- +........          
T Consensus       168 -------------------~~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~~~~~~----------  217 (613)
T 3oml_A          168 -------------------NFGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTEGILPD----------  217 (613)
T ss_dssp             -------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCCCH----------
T ss_pred             -------------------CCCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhhhccch----------
Confidence                               1134589999999999999998875   8999999998541 111100000          


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                               ...+.+..+|+|.++++++...
T Consensus       218 ---------~~~~~~~pedvA~~v~~L~s~~  239 (613)
T 3oml_A          218 ---------ILFNELKPKLIAPVVAYLCHES  239 (613)
T ss_dssp             ---------HHHTTCCGGGTHHHHHHTTSTT
T ss_pred             ---------hhhhcCCHHHHHHHHHHhcCCC
Confidence                     0023457899999999998754

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.68  E-value=4.7e-16  Score=136.61  Aligned_cols=224  Identities=16%  Similarity=0.059  Sum_probs=137.6

Q ss_pred             CCcEEEEeCC--chhhHHHHHHHHHHCCCeEEEEEcCCC--------cHHHHHHHhcCCCCC--CcEEEEecc-------
Q 040253            4 IAETVCVTGA--SGFIGSWLIMRLLERGYAVRATVRDPD--------NKKKVKHLLELPKAS--THLTLWKAD-------   64 (338)
Q Consensus         4 ~~~~ilVtGa--tG~iG~~l~~~L~~~g~~V~~~~r~~~--------~~~~~~~~~~~~~~~--~~~~~~~~D-------   64 (338)
                      .+|+++||||  +|.||.+++++|+++|++|++++|++.        ....++.........  ..+..+.+|       
T Consensus         8 ~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   87 (315)
T 2o2s_A            8 RGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKPE   87 (315)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSSTT
T ss_pred             CCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhccccccccccccccccccccc
Confidence            3588999999  899999999999999999999987531        000111111111110  012333333       


Q ss_pred             -----cCC--------CCCchhhhC-------CccEEEEecccCC-------CCCCCccchhhhhhhHHHHHHHHHHHhC
Q 040253           65 -----LAE--------EGNFDEPIR-------GCTGVFHLATPMD-------FESKDPENEVIRPTINGMVSIMRACKNA  117 (338)
Q Consensus        65 -----l~d--------~~~~~~~~~-------~~d~vi~~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~  117 (338)
                           ++|        .+++.++++       ++|++||+||...       ....+..+..+++|+.++..+++++...
T Consensus        88 ~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~  167 (315)
T 2o2s_A           88 DVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGPI  167 (315)
T ss_dssp             SSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHSTT
T ss_pred             hhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                 332        556665543       6999999998532       1112234567899999999999998654


Q ss_pred             C-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC-chHHHHHHHHHHHHHHHHHH----cCccEEEEcCC
Q 040253          118 K-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG-WMYFVSKTLAEQAAWKFAEE----NNIDFISIIPS  191 (338)
Q Consensus       118 ~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~  191 (338)
                      - ...++|++||...+.  ..                    ... ..|+.+|...+.+.+.++.+    +|+++++++||
T Consensus       168 m~~~g~Iv~isS~~~~~--~~--------------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG  225 (315)
T 2o2s_A          168 MNEGGSAVTLSYLAAER--VV--------------------PGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAG  225 (315)
T ss_dssp             EEEEEEEEEEEEGGGTS--CC--------------------TTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred             HhcCCEEEEEecccccc--cC--------------------CCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecc
Confidence            2 125899999976542  10                    112 37999999999999888765    58999999999


Q ss_pred             ceeCCCCCC----CCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCc-eEEec
Q 040253          192 LVVGPFLTS----SMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGR-YICSS  255 (338)
Q Consensus       192 ~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~-~~~~~  255 (338)
                      .+..+....    ................ ...     ..+...+|+|+++++++....  ..|. +.+.+
T Consensus       226 ~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~p~-----~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdG  290 (315)
T 2o2s_A          226 PLKSRAASAIGKSGEKSFIDYAIDYSYNN-APL-----RRDLHSDDVGGAALFLLSPLARAVSGVTLYVDN  290 (315)
T ss_dssp             CCCCHHHHHTTCSSSSCHHHHHHHHHHHH-SSS-----CCCCCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             cccchhhhhccccccchhHHHHHHHHhcc-CCC-----CCCCCHHHHHHHHHHHhCchhccCcCCEEEECC
Confidence            886542100    0000000000000000 111     347789999999999987432  2444 44543

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.65  E-value=3e-16  Score=146.43  Aligned_cols=223  Identities=16%  Similarity=0.072  Sum_probs=150.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCe-EEEE-EcCCCc-------------HHH-HHHHhcCCCCCCcEEEEecccCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYA-VRAT-VRDPDN-------------KKK-VKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~-~r~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      ..+++|||||+|.||.+++++|+++|++ |+++ +|+...             ... ...+..   ...++.++.+|++|
T Consensus       250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELAD---LGATATVVTCDLTD  326 (525)
T ss_dssp             TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHH---HTCEEEEEECCTTS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHh---cCCEEEEEECCCCC
Confidence            3589999999999999999999999987 5555 776422             111 121211   12578999999999


Q ss_pred             CCCchhhhC------CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCCC----ccEEEEecCceee
Q 040253           68 EGNFDEPIR------GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAKT----VRRLVFTSSAGTL  132 (338)
Q Consensus        68 ~~~~~~~~~------~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~~~v~~Ss~~v~  132 (338)
                      .+++.++++      .+|+|||+||.....     ..+..+..++.|+.++.++.+++.....    ..+||++||.+.+
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~  406 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAI  406 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHc
Confidence            998888775      479999999965422     1122346788999999999999876541    4689999997655


Q ss_pred             eccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhh
Q 040253          133 DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSP  212 (338)
Q Consensus       133 ~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~  212 (338)
                      .  .                    ......|+.+|...+.+.+++. ..|+++++|.||.+ +.+...  .......+. 
T Consensus       407 ~--g--------------------~~g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~-~tgm~~--~~~~~~~~~-  459 (525)
T 3qp9_A          407 W--G--------------------GAGQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPW-EGSRVT--EGATGERLR-  459 (525)
T ss_dssp             T--C--------------------CTTCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCB-TTSGGG--SSHHHHHHH-
T ss_pred             C--C--------------------CCCCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCcc-cccccc--chhhHHHHH-
Confidence            3  1                    1134589999999998876553 34999999999988 322110  011111111 


Q ss_pred             cccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHh
Q 040253          213 ITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREK  270 (338)
Q Consensus       213 ~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~  270 (338)
                        ..        ....+..+++++++..++..+..   . +....+.+..+...+...
T Consensus       460 --~~--------g~~~l~pee~a~~l~~~l~~~~~---~-v~v~~~dw~~~~~~~~~~  503 (525)
T 3qp9_A          460 --RL--------GLRPLAPATALTALDTALGHGDT---A-VTIADVDWSSFAPGFTTA  503 (525)
T ss_dssp             --HT--------TBCCBCHHHHHHHHHHHHHHTCS---E-EEECCBCHHHHHHHHHSS
T ss_pred             --hc--------CCCCCCHHHHHHHHHHHHhCCCC---e-EEEEeCCHHHHHhhcccc
Confidence              11        13468899999999999987531   1 222345676666665543

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.64  E-value=7.8e-16  Score=135.96  Aligned_cols=170  Identities=12%  Similarity=0.044  Sum_probs=120.3

Q ss_pred             CcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCC---------cHHHHHHHhcC-CCCCCcEEEEecccCCC--C-
Q 040253            5 AETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPD---------NKKKVKHLLEL-PKASTHLTLWKADLAEE--G-   69 (338)
Q Consensus         5 ~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~---------~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~--~-   69 (338)
                      .|+++||||++  .||.+++++|+++|++|++.+|++.         ........... ......+..+.+|+++.  + 
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~   81 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence            58999999875  9999999999999999998876541         11111111111 11124578888999887  6 


Q ss_pred             -----------------CchhhhC-------CccEEEEecccCC-------CCCCCccchhhhhhhHHHHHHHHHHHhCC
Q 040253           70 -----------------NFDEPIR-------GCTGVFHLATPMD-------FESKDPENEVIRPTINGMVSIMRACKNAK  118 (338)
Q Consensus        70 -----------------~~~~~~~-------~~d~vi~~a~~~~-------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~  118 (338)
                                       ++.++++       ++|++||+||...       ....+..+..+++|+.++..+.+++...-
T Consensus        82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m  161 (329)
T 3lt0_A           82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM  161 (329)
T ss_dssp             CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred             hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                             6666553       6899999998531       11222345789999999999999886542


Q ss_pred             -CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc-hHHHHHHHHHHHHHHHHHH----cCccEEEEcCCc
Q 040253          119 -TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW-MYFVSKTLAEQAAWKFAEE----NNIDFISIIPSL  192 (338)
Q Consensus       119 -~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~-~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~  192 (338)
                       ...++|++||...+.  .                    .+... .|+.+|.+.+.+.+.++.+    +|++++++.||.
T Consensus       162 ~~~g~Iv~isS~~~~~--~--------------------~~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~  219 (329)
T 3lt0_A          162 KPQSSIISLTYHASQK--V--------------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGP  219 (329)
T ss_dssp             EEEEEEEEEECGGGTS--C--------------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             hhCCeEEEEeCccccC--C--------------------CCcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecce
Confidence             125899999976542  1                    01222 7999999999988887765    489999999998


Q ss_pred             eeCC
Q 040253          193 VVGP  196 (338)
Q Consensus       193 v~G~  196 (338)
                      +..+
T Consensus       220 v~T~  223 (329)
T 3lt0_A          220 LKSR  223 (329)
T ss_dssp             CCCH
T ss_pred             eech
Confidence            8654

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.55  E-value=8.4e-15  Score=145.97  Aligned_cols=207  Identities=14%  Similarity=0.088  Sum_probs=137.7

Q ss_pred             CCCcEEEEeCCchh-hHHHHHHHHHHCCCeEEEEE-cCCCcHHHH-HHHhcC-CCCCCcEEEEecccCCCCCchhhhC--
Q 040253            3 SIAETVCVTGASGF-IGSWLIMRLLERGYAVRATV-RDPDNKKKV-KHLLEL-PKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~-~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      ..++++|||||+|. ||.+++++|++.|++|++++ |+.+..... +.+... .....++.++.+|++|.+++.++++  
T Consensus       474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I  553 (1688)
T 2pff_A          474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI  553 (1688)
T ss_dssp             CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            34688999999998 99999999999999999884 655443332 222111 1113578999999999998887652  


Q ss_pred             -----------CccEEEEecccCCCC--C------CCccchhhhhhhHHHHHHHHHHHh--C---CCccEEEEecCceee
Q 040253           77 -----------GCTGVFHLATPMDFE--S------KDPENEVIRPTINGMVSIMRACKN--A---KTVRRLVFTSSAGTL  132 (338)
Q Consensus        77 -----------~~d~vi~~a~~~~~~--~------~~~~~~~~~~n~~~~~~l~~~~~~--~---~~~~~~v~~Ss~~v~  132 (338)
                                 ++|++||+||.....  .      .+..+..+++|+.++..++++++.  .   ....+||++||....
T Consensus       554 ~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~  633 (1688)
T 2pff_A          554 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT  633 (1688)
T ss_dssp             HSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTT
T ss_pred             HHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhc
Confidence                       489999999964322  1      122357889999999998887722  1   113589999996443


Q ss_pred             eccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHH-HHHHHHHcC--ccEEEEcCCceeCCCCCCCCChhHHHh
Q 040253          133 DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQA-AWKFAEENN--IDFISIIPSLVVGPFLTSSMPPSLITA  209 (338)
Q Consensus       133 ~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~  209 (338)
                      .  .                      ....|+.+|...+.+ .+.++++.+  ++++.+.||.+.|....... .    .
T Consensus       634 ~--G----------------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~-e----~  684 (1688)
T 2pff_A          634 F--G----------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN-N----I  684 (1688)
T ss_dssp             S--S----------------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT-T----T
T ss_pred             c--C----------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc-h----H
Confidence            2  0                      123799999999998 444444333  88888999988753221110 0    0


Q ss_pred             hhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          210 LSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      .......   .    .......+|+|++++.++...
T Consensus       685 ~~~~l~~---i----plR~~sPEEVA~aIlFLaSd~  713 (1688)
T 2pff_A          685 IAEGIEK---M----GVRTFSQKEMAFNLLGLLTPE  713 (1688)
T ss_dssp             CSTTTSS---S----SCCCCCCCTTHHHHHHHTSTT
T ss_pred             HHHHHHh---C----CCCCCCHHHHHHHHHHHhCCC
Confidence            0000000   0    023458899999999998765

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.54  E-value=7e-14  Score=143.70  Aligned_cols=207  Identities=15%  Similarity=0.108  Sum_probs=140.0

Q ss_pred             CCCcEEEEeCCchh-hHHHHHHHHHHCCCeEEEEE-cCCCcHHHH-HHHhc-CCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            3 SIAETVCVTGASGF-IGSWLIMRLLERGYAVRATV-RDPDNKKKV-KHLLE-LPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      ..++++|||||+|. ||.+++++|++.|++|++++ |+....... +.+.. ......++.++.+|++|.+++.++++  
T Consensus       673 l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i  752 (1887)
T 2uv8_A          673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI  752 (1887)
T ss_dssp             CTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHH
Confidence            34689999999998 99999999999999999984 555443322 22211 11112578999999999988876552  


Q ss_pred             -----------CccEEEEecccCCCC------C--CCccchhhhhhhHHHHHHHHHHHhCC-----CccEEEEecCceee
Q 040253           77 -----------GCTGVFHLATPMDFE------S--KDPENEVIRPTINGMVSIMRACKNAK-----TVRRLVFTSSAGTL  132 (338)
Q Consensus        77 -----------~~d~vi~~a~~~~~~------~--~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~Ss~~v~  132 (338)
                                 ++|++||+||.....      .  .+..+..+.+|+.++..++++++...     ...+||++||...+
T Consensus       753 ~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~  832 (1887)
T 2uv8_A          753 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT  832 (1887)
T ss_dssp             HSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTC
T ss_pred             HHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhc
Confidence                       589999999965422      1  12235788999999999988873222     13589999997544


Q ss_pred             eccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHH-HHHHHHHcC--ccEEEEcCCceeCCCCCCCCChhHHHh
Q 040253          133 DVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQA-AWKFAEENN--IDFISIIPSLVVGPFLTSSMPPSLITA  209 (338)
Q Consensus       133 ~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~~--~~~~ilRp~~v~G~~~~~~~~~~~~~~  209 (338)
                      .  .                      ....|+.+|...+.+ .+.++++++  ++++++.||.+.|........ .....
T Consensus       833 ~--g----------------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~-~~~~~  887 (1887)
T 2uv8_A          833 F--G----------------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANN-IIAEG  887 (1887)
T ss_dssp             S--S----------------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CC-TTHHH
T ss_pred             c--C----------------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccch-hHHHH
Confidence            2  0                      123799999999998 666666543  999999999998532111100 01111


Q ss_pred             hhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          210 LSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..   ..+        ..+...+|+|+++++++...
T Consensus       888 ~~---~~p--------lr~~sPEEVA~avlfLaSd~  912 (1887)
T 2uv8_A          888 IE---KMG--------VRTFSQKEMAFNLLGLLTPE  912 (1887)
T ss_dssp             HH---TTS--------CCCEEHHHHHHHHHGGGSHH
T ss_pred             HH---hcC--------CCCCCHHHHHHHHHHHhCCC
Confidence            11   100        14558999999999998754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.48  E-value=4.1e-13  Score=118.86  Aligned_cols=170  Identities=12%  Similarity=-0.071  Sum_probs=117.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHH-CCCeEEEEEcCCCcHH------------HHHH-HhcCCCCCCcEEEEecccCCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLE-RGYAVRATVRDPDNKK------------KVKH-LLELPKASTHLTLWKADLAEEG   69 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~------------~~~~-~~~~~~~~~~~~~~~~Dl~d~~   69 (338)
                      .+|++|||||++-||.++++.|++ .|.+|.+++|+.+...            .... +...   ...+..+.+|++|.+
T Consensus        46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~---G~~a~~i~~Dvtd~~  122 (405)
T 3zu3_A           46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK---GLYAKSINGDAFSDE  122 (405)
T ss_dssp             CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT---TCCEEEEESCTTSHH
T ss_pred             CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc---CCceEEEECCCCCHH
Confidence            368999999999999999999999 9999999998654321            1121 1111   146788999999998


Q ss_pred             CchhhhC-------CccEEEEecccC-------------CC--------------------------CCCCccchhhhhh
Q 040253           70 NFDEPIR-------GCTGVFHLATPM-------------DF--------------------------ESKDPENEVIRPT  103 (338)
Q Consensus        70 ~~~~~~~-------~~d~vi~~a~~~-------------~~--------------------------~~~~~~~~~~~~n  103 (338)
                      ++.++++       ++|++||+||..             ..                          ...+..+..+++|
T Consensus       123 ~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn  202 (405)
T 3zu3_A          123 IKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVM  202 (405)
T ss_dssp             HHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhh
Confidence            8777653       699999999863             00                          0111233456667


Q ss_pred             hHHHH-HHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHH
Q 040253          104 INGMV-SIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE  179 (338)
Q Consensus       104 ~~~~~-~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~  179 (338)
                      ..+.. .+++++....   .-.++|++||.....  ..                  +......|+.+|...+.+.+.++.
T Consensus       203 ~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~--~~------------------p~~~~~aY~AaKaal~~ltrsLA~  262 (405)
T 3zu3_A          203 GGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKI--TH------------------DIYWNGSIGAAKKDLDQKVLAIRE  262 (405)
T ss_dssp             SSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGG--GT------------------TTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhC--cC------------------CCccchHHHHHHHHHHHHHHHHHH
Confidence            66654 4455443211   125899999965432  00                  001125899999999999999887


Q ss_pred             Hc----CccEEEEcCCceeCC
Q 040253          180 EN----NIDFISIIPSLVVGP  196 (338)
Q Consensus       180 ~~----~~~~~ilRp~~v~G~  196 (338)
                      ++    |+++.++-||.+--+
T Consensus       263 Ela~~~GIRVNaVaPG~i~T~  283 (405)
T 3zu3_A          263 SLAAHGGGDARVSVLKAVVSQ  283 (405)
T ss_dssp             HHHTTTSCEEEEEECCCCCCH
T ss_pred             HhCcccCeEEEEEEeCCCcCc
Confidence            74    899999999988654

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.48  E-value=2.7e-13  Score=139.15  Aligned_cols=208  Identities=12%  Similarity=0.083  Sum_probs=137.6

Q ss_pred             CCCCcEEEEeCCchh-hHHHHHHHHHHCCCeEEEEEc-CCCcHHHH-HHHh-cCCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            2 GSIAETVCVTGASGF-IGSWLIMRLLERGYAVRATVR-DPDNKKKV-KHLL-ELPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         2 ~~~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~-~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      ...++++|||||+|. ||.+++++|++.|++|+++++ +....... +.+. .......++.++.+|++|.+++.++++ 
T Consensus       649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~  728 (1878)
T 2uv9_A          649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY  728 (1878)
T ss_dssp             CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence            344689999999999 999999999999999999864 44333221 2221 111112578999999999988877652 


Q ss_pred             ----------CccEEEEecccCCCC---CC-----CccchhhhhhhHHHHHHHHHHHh--C---CCccEEEEecCceeee
Q 040253           77 ----------GCTGVFHLATPMDFE---SK-----DPENEVIRPTINGMVSIMRACKN--A---KTVRRLVFTSSAGTLD  133 (338)
Q Consensus        77 ----------~~d~vi~~a~~~~~~---~~-----~~~~~~~~~n~~~~~~l~~~~~~--~---~~~~~~v~~Ss~~v~~  133 (338)
                                ++|+|||+||.....   ..     +..+..+.+|+.++.+++++++.  .   ....+||++||...+.
T Consensus       729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~  808 (1878)
T 2uv9_A          729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF  808 (1878)
T ss_dssp             HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS
T ss_pred             HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc
Confidence                      589999999965322   11     22357889999999888776321  1   1136899999975442


Q ss_pred             ccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH-c--CccEEEEcCCceeCCCCCCCCChhHHHhh
Q 040253          134 VEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE-N--NIDFISIIPSLVVGPFLTSSMPPSLITAL  210 (338)
Q Consensus       134 ~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  210 (338)
                        .                      ....|+.+|...+.+++.++.+ .  +++++++.||.+-|...   .... ....
T Consensus       809 --g----------------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m---~~~~-~~~~  860 (1878)
T 2uv9_A          809 --G----------------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGL---MSAN-NLVA  860 (1878)
T ss_dssp             --S----------------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTS---CSHH-HHTH
T ss_pred             --C----------------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCcc---cccc-hhhH
Confidence              1                      1237999999999987766544 2  39999999998863221   1110 0000


Q ss_pred             hhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          211 SPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ......+        ......+|+|++++.++...
T Consensus       861 ~~~~~~p--------lr~~sPeEVA~avlfLaSd~  887 (1878)
T 2uv9_A          861 EGVEKLG--------VRTFSQQEMAFNLLGLMAPA  887 (1878)
T ss_dssp             HHHHTTT--------CCCBCHHHHHHHHHHHHSHH
T ss_pred             HHHHhcC--------CCCCCHHHHHHHHHHHhCCc
Confidence            0001111        13458999999999988653

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.45  E-value=4e-13  Score=127.43  Aligned_cols=218  Identities=18%  Similarity=0.125  Sum_probs=142.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC---------CcHHHHH-HHhcCCCCCCcEEEEecccCCCCCchh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP---------DNKKKVK-HLLELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .+|+++||||++-||.+++++|+++|++|++.+|+.         +..+... .+....   ..+   ..|+.|.++..+
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g---~~~---~~d~~d~~~~~~   80 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNG---GVA---VADYNNVLDGDK   80 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTT---CEE---EEECCCTTCHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcC---CeE---EEEcCCHHHHHH
Confidence            468899999999999999999999999999988754         3333222 221111   122   357777766554


Q ss_pred             hh-------CCccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCC
Q 040253           74 PI-------RGCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEH  137 (338)
Q Consensus        74 ~~-------~~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~  137 (338)
                      ++       .++|++||+||....     ...+..+..+++|+.++..+.+++.    +.+ ..++|++||.....  ..
T Consensus        81 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~-~G~IVnisS~ag~~--~~  157 (604)
T 2et6_A           81 IVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK-YGRIVNTSSPAGLY--GN  157 (604)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH--CC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECCHHHcC--CC
Confidence            43       379999999996431     1223345789999999988877663    333 46999999976542  10


Q ss_pred             CCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcc
Q 040253          138 RKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPIT  214 (338)
Q Consensus       138 ~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~  214 (338)
                                          .....|+.+|.....+.+.++.+.   |+++++|.|+ +.    +    .......    
T Consensus       158 --------------------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~----T----~m~~~~~----  204 (604)
T 2et6_A          158 --------------------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-AR----S----RMTESIM----  204 (604)
T ss_dssp             --------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CC----C----HHHHTTS----
T ss_pred             --------------------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-Cc----C----ccccccC----
Confidence                                124589999999999999998874   8999999995 21    1    0000000    


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhcCCCC--CCceEEec-------------------CCCCHHHHHHHHHHh
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA--KGRYICSS-------------------HPATILELAKFLREK  270 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~--~~~~~~~~-------------------~~~t~~e~~~~i~~~  270 (338)
                        .     ....+....+|++.++++++.....  +..+.+.+                   ...+..++.+.+.+.
T Consensus       205 --~-----~~~~~~~~pe~vA~~v~~L~s~~~~itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  274 (604)
T 2et6_A          205 --P-----PPMLEKLGPEKVAPLVLYLSSAENELTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEI  274 (604)
T ss_dssp             --C-----HHHHTTCSHHHHHHHHHHHTSSSCCCCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHH
T ss_pred             --C-----hhhhccCCHHHHHHHHHHHhCCcccCCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHh
Confidence              0     0001235789999999998865421  22333321                   335778888777654

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.45  E-value=4.4e-13  Score=127.18  Aligned_cols=194  Identities=17%  Similarity=0.126  Sum_probs=131.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEeccc-CCCCCchh----hhCCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL-AEEGNFDE----PIRGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-~d~~~~~~----~~~~~   78 (338)
                      .+|+++||||++-||..++++|+++|++|++.+|... ....+.+...   ..++..+.+|+ .+.+.+.+    .+.++
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~-~~~~~~i~~~---g~~~~~~~~Dv~~~~~~~~~~~~~~~G~i  396 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDA-TKTVDEIKAA---GGEAWPDQHDVAKDSEAIIKNVIDKYGTI  396 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccH-HHHHHHHHhc---CCeEEEEEcChHHHHHHHHHHHHHhcCCC
Confidence            3588999999999999999999999999999876432 1212222221   14567788888 55443222    23479


Q ss_pred             cEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |++||+||....     ...+..+..+++|+.++..+.+++.    +.+ ..++|++||.....  .             
T Consensus       397 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~ag~~--~-------------  460 (604)
T 2et6_A          397 DILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ-FGRIINITSTSGIY--G-------------  460 (604)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCHHHHS--C-------------
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhcc--C-------------
Confidence            999999996432     1223345789999999988887763    333 46999999976542  1             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG  226 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (338)
                             ......|+.||.....+.+.++.+.   |+++++|.||.  .   + .+....   .    ...       ..
T Consensus       461 -------~~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~--~---T-~m~~~~---~----~~~-------~~  513 (604)
T 2et6_A          461 -------NFGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA--E---T-AMTLSI---M----REQ-------DK  513 (604)
T ss_dssp             -------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC--C---C-CC-----------------------C
T ss_pred             -------CCCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC--C---C-cccccc---C----chh-------hc
Confidence                   0124589999999999999988874   89999999972  1   1 111100   0    000       02


Q ss_pred             ccccHHHHHHHHHHhhcC
Q 040253          227 QFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       227 ~~i~v~D~a~~~~~~l~~  244 (338)
                      +....+|++.++++++..
T Consensus       514 ~~~~pe~vA~~v~~L~s~  531 (604)
T 2et6_A          514 NLYHADQVAPLLVYLGTD  531 (604)
T ss_dssp             CSSCGGGTHHHHHHTTST
T ss_pred             cCCCHHHHHHHHHHHhCC
Confidence            345789999999998864

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.44  E-value=1.4e-13  Score=134.49  Aligned_cols=202  Identities=18%  Similarity=0.183  Sum_probs=141.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHH-HCCC-eEEEEEcCCCc---HHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            4 IAETVCVTGASGFIGSWLIMRLL-ERGY-AVRATVRDPDN---KKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~-~~g~-~V~~~~r~~~~---~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      +.++++||||+|.||..++++|+ ++|. +|++++|+...   .... +.+..   ...++.++.+|++|.+++.++++ 
T Consensus       529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~---~G~~v~~~~~Dvsd~~~v~~~~~~  605 (795)
T 3slk_A          529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTA---YGAEVSLQACDVADRETLAKVLAS  605 (795)
T ss_dssp             TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHH
Confidence            46899999999999999999999 7897 59999997432   2222 22222   12578999999999998888764 


Q ss_pred             -----CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -----GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                           .+|+|||+|+.....     ..+..+..++.|+.++.++.+++.. . . +||++||.+.+-  .          
T Consensus       606 ~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~-l-~iV~~SS~ag~~--g----------  670 (795)
T 3slk_A          606 IPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-D-V-ALVLFSSVSGVL--G----------  670 (795)
T ss_dssp             SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-T-S-EEEEEEETHHHH--T----------
T ss_pred             HHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-C-C-EEEEEccHHhcC--C----------
Confidence                 479999999865421     2233456788999999999998832 2 3 899999976553  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHH-hhhhcccCCCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLIT-ALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  225 (338)
                                ......|+.+|...+.+.+++.. .|++++.+-||.+-.++.    ...... .........        
T Consensus       671 ----------~~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g~----~~~~~~~~~~~~~~~g--------  727 (795)
T 3slk_A          671 ----------SGGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHGM----ASTLREAEQDRLARSG--------  727 (795)
T ss_dssp             ----------CSSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCCH----HHHHHHHHHHHHHHTT--------
T ss_pred             ----------CCCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcchh----hccccHHHHHHHHhcC--------
Confidence                      12355899999988887776654 599999999987764431    111110 001011111        


Q ss_pred             CccccHHHHHHHHHHhhcCCC
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ...+..++....+..++..+.
T Consensus       728 ~~~l~~~e~~~~~~~~l~~~~  748 (795)
T 3slk_A          728 LLPISTEEGLSQFDAACGGAH  748 (795)
T ss_dssp             BCCCCHHHHHHHHHHHHTSSC
T ss_pred             CCCCCHHHHHHHHHHHHhCCC
Confidence            345778888888888887754

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.43  E-value=1.3e-12  Score=117.61  Aligned_cols=171  Identities=11%  Similarity=-0.070  Sum_probs=114.1

Q ss_pred             CCcEEEEeCCchhhHHH--HHHHHHHCCCeEEEEEcCCCc------------HHHHHHHhcCCCCCCcEEEEecccCCCC
Q 040253            4 IAETVCVTGASGFIGSW--LIMRLLERGYAVRATVRDPDN------------KKKVKHLLELPKASTHLTLWKADLAEEG   69 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~--l~~~L~~~g~~V~~~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~   69 (338)
                      .+|++|||||++-||.+  +++.|.+.|++|++++|+...            ......+....  ...+..+.+|++|.+
T Consensus        59 ~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           59 GPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK--GLVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT--TCCEEEEESCTTCHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc--CCcEEEEEeeCCCHH
Confidence            36899999999999999  999998889999999996543            12333222111  246889999999998


Q ss_pred             CchhhhC-------CccEEEEecccC-------------CCC--------------------------CCCccchhhhhh
Q 040253           70 NFDEPIR-------GCTGVFHLATPM-------------DFE--------------------------SKDPENEVIRPT  103 (338)
Q Consensus        70 ~~~~~~~-------~~d~vi~~a~~~-------------~~~--------------------------~~~~~~~~~~~n  103 (338)
                      ++.++++       ++|++||+||..             ...                          ..+..+..+++|
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn  216 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM  216 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence            8777653       689999999863             000                          011112334444


Q ss_pred             hHHHH-HHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHH
Q 040253          104 INGMV-SIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE  179 (338)
Q Consensus       104 ~~~~~-~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~  179 (338)
                      ..+.. .+++++....   ...++|++||....-  ..                  +......|+.+|.+.+.+.+.++.
T Consensus       217 ~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~--~~------------------p~~~~~aY~ASKaAL~~ltrsLA~  276 (418)
T 4eue_A          217 GGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPR--TY------------------KIYREGTIGIAKKDLEDKAKLINE  276 (418)
T ss_dssp             SSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG--GT------------------TTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcC--CC------------------CccccHHHHHHHHHHHHHHHHHHH
Confidence            44333 4445443322   125799999864331  00                  111125899999999998888886


Q ss_pred             H----cCccEEEEcCCceeCC
Q 040253          180 E----NNIDFISIIPSLVVGP  196 (338)
Q Consensus       180 ~----~~~~~~ilRp~~v~G~  196 (338)
                      +    +|++++++-||.+--+
T Consensus       277 ELa~~~GIrVN~V~PG~v~T~  297 (418)
T 4eue_A          277 KLNRVIGGRAFVSVNKALVTK  297 (418)
T ss_dssp             HHHHHHSCEEEEEECCCCCCH
T ss_pred             HhCCccCeEEEEEECCcCcCh
Confidence            6    4799999999988654

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.42  E-value=6.1e-13  Score=118.81  Aligned_cols=171  Identities=15%  Similarity=-0.074  Sum_probs=115.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHH-CCCeEEEEEcCCCcHHH------------H-HHHhcCCCCCCcEEEEecccCCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLE-RGYAVRATVRDPDNKKK------------V-KHLLELPKASTHLTLWKADLAEEG   69 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~------------~-~~~~~~~~~~~~~~~~~~Dl~d~~   69 (338)
                      .+|++|||||++-||.++++.|++ .|.+|++++|+.+....            . +.+...   ...+..+.+|++|.+
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~---G~~a~~i~~Dvtd~~  136 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA---GLYSKSINGDAFSDA  136 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT---TCCEEEEESCTTSHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc---CCcEEEEEecCCCHH
Confidence            368999999999999999999999 99999999987553221            1 111111   146788999999998


Q ss_pred             Cchhhh--------CCccEEEEecccC-------------CCC--------------------------CCCccchhhhh
Q 040253           70 NFDEPI--------RGCTGVFHLATPM-------------DFE--------------------------SKDPENEVIRP  102 (338)
Q Consensus        70 ~~~~~~--------~~~d~vi~~a~~~-------------~~~--------------------------~~~~~~~~~~~  102 (338)
                      ++.+++        .++|++||+||..             ...                          ..+..+..+++
T Consensus       137 ~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~V  216 (422)
T 3s8m_A          137 ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITV  216 (422)
T ss_dssp             HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHh
Confidence            776544        4689999999852             100                          01112234445


Q ss_pred             hhHHHH-HHHHHHHhCC---CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHH
Q 040253          103 TINGMV-SIMRACKNAK---TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFA  178 (338)
Q Consensus       103 n~~~~~-~l~~~~~~~~---~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~  178 (338)
                      |..+.. .+++++....   ...++|++||....-  .                  .+......|+.||...+.+.+.++
T Consensus       217 n~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~--~------------------~p~~~~~aY~ASKaAl~~lTrsLA  276 (422)
T 3s8m_A          217 MGGQDWELWIDALEGAGVLADGARSVAFSYIGTEI--T------------------WPIYWHGALGKAKVDLDRTAQRLN  276 (422)
T ss_dssp             HSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGG--G------------------HHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhc--c------------------CCCccchHHHHHHHHHHHHHHHHH
Confidence            555443 4555543321   125799999865431  0                  011122589999999999999988


Q ss_pred             HHc---CccEEEEcCCceeCCC
Q 040253          179 EEN---NIDFISIIPSLVVGPF  197 (338)
Q Consensus       179 ~~~---~~~~~ilRp~~v~G~~  197 (338)
                      .++   |++++++.||.+--+.
T Consensus       277 ~Ela~~GIRVNaVaPG~i~T~~  298 (422)
T 3s8m_A          277 ARLAKHGGGANVAVLKSVVTQA  298 (422)
T ss_dssp             HHHHTTTCEEEEEEECCCCCTT
T ss_pred             HHhCccCEEEEEEEcCCCcChh
Confidence            875   8999999999887554

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.37  E-value=5.1e-13  Score=117.49  Aligned_cols=177  Identities=11%  Similarity=0.056  Sum_probs=117.5

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCC-------eEEEEEcC----CCcHHH-HHHHhcCCCCCCcEEEEecccCCC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGY-------AVRATVRD----PDNKKK-VKHLLELPKASTHLTLWKADLAEE   68 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~----~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~   68 (338)
                      |+.++|||+||||+||+|++++..|+..|.       +|.+++++    .+.... ..++.....  + +   ..|+...
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~--~-~---~~~i~~~   74 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAF--P-L---LAGMTAH   74 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTC--T-T---EEEEEEE
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcc--c-c---cCcEEEe
Confidence            655568999999999999999999998875       78888776    221211 112221100  1 1   2366666


Q ss_pred             CCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           69 GNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        69 ~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      .++.++++++|+|||+|+.......+ ..++...|+..+.++++++.+.. +..+||++|...-.-.     ....+..+
T Consensus        75 ~~~~~al~~aD~Vi~~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t-----~~~~~~~~  148 (329)
T 1b8p_A           75 ADPMTAFKDADVALLVGARPRGPGME-RKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNA-----YIAMKSAP  148 (329)
T ss_dssp             SSHHHHTTTCSEEEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCT
T ss_pred             cCcHHHhCCCCEEEEeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHH-----HHHHHHcC
Confidence            77888999999999999965433333 34788999999999999999873 4568999987421000     00000000


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPF  197 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~  197 (338)
                              --++...++.+++...++...+++..|++...++...++|..
T Consensus       149 --------~~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H  190 (329)
T 1b8p_A          149 --------SLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH  190 (329)
T ss_dssp             --------TSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS
T ss_pred             --------CCCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEecc
Confidence                    001233578888888888888888888877777777788854

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.35  E-value=2.1e-12  Score=95.97  Aligned_cols=96  Identities=21%  Similarity=0.249  Sum_probs=77.7

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ..++++|+|+|+ |++|+++++.|.+.| ++|++++|+++....+..        .++..+.+|+.+.+.+.++++++|+
T Consensus         2 ~~~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~d~   72 (118)
T 3ic5_A            2 NAMRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--------MGVATKQVDAKDEAGLAKALGGFDA   72 (118)
T ss_dssp             CTTCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--------TTCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--------CCCcEEEecCCCHHHHHHHHcCCCE
Confidence            345789999999 999999999999999 999999998765544431        4678899999999999999999999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEE
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV  124 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v  124 (338)
                      |||+++.          .       ....+++++.+.+ +++|.
T Consensus        73 vi~~~~~----------~-------~~~~~~~~~~~~g-~~~~~   98 (118)
T 3ic5_A           73 VISAAPF----------F-------LTPIIAKAAKAAG-AHYFD   98 (118)
T ss_dssp             EEECSCG----------G-------GHHHHHHHHHHTT-CEEEC
T ss_pred             EEECCCc----------h-------hhHHHHHHHHHhC-CCEEE
Confidence            9999852          1       1357888888888 65554

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.19  E-value=5.9e-11  Score=128.07  Aligned_cols=169  Identities=17%  Similarity=0.127  Sum_probs=118.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCCCcHHHHHHH-hcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHL-LELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ..++++||||+|-||..+++.|+++|.+ |++++|+....+..... ..+.....++..+.+|++|.+++.++++     
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence            3678999999999999999999999986 77888876543221111 1111112578899999999988877653     


Q ss_pred             -CccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       .+|+|||+|+...     ....+..+..++.|+.++.++.+++...- ...+||++||.+..-  .             
T Consensus      1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~--g------------- 2027 (2512)
T 2vz8_A         1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGR--G------------- 2027 (2512)
T ss_dssp             SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHT--T-------------
T ss_pred             CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcC--C-------------
Confidence             6899999998543     22334456789999999999988776431 146899999976542  1             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVG  195 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G  195 (338)
                             ......|+.+|...+.+.+.... .|++...+-.+.+-+
T Consensus      2028 -------~~g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A         2028 -------NAGQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIGD 2065 (2512)
T ss_dssp             -------CTTCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBCT
T ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcCC
Confidence                   01345899999999998886554 499988888776543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=99.18  E-value=1.1e-10  Score=102.20  Aligned_cols=117  Identities=11%  Similarity=0.048  Sum_probs=81.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ++|||+||||+||+|+.++..|+.+|  ++|.++++++. ......+..... ...+..    +.+.+++.++++++|+|
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~-~~~~~dL~~~~~-~~~v~~----~~~t~d~~~al~gaDvV   80 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA-PGVTADISHMDT-GAVVRG----FLGQQQLEAALTGMDLI   80 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH-HHHHHHHHTSCS-SCEEEE----EESHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc-HhHHHHhhcccc-cceEEE----EeCCCCHHHHcCCCCEE
Confidence            46899999999999999999999988  78999888765 222222222110 012222    22234567789999999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||+|+........ ..++...|+..+.++++++.+.+ .+.+|+++|
T Consensus        81 i~~ag~~~~~g~~-r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~S  125 (326)
T 1smk_A           81 IVPAGVPRKPGMT-RDDLFKINAGIVKTLCEGIAKCC-PRAIVNLIS  125 (326)
T ss_dssp             EECCCCCCCSSCC-CSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECC
T ss_pred             EEcCCcCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEEC
Confidence            9999865432222 24778999999999999999988 555666665

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.10  E-value=1.6e-09  Score=117.17  Aligned_cols=229  Identities=16%  Similarity=0.137  Sum_probs=142.2

Q ss_pred             CCcEEEEeCCchh-hHHHHHHHHHHCCCeEEEEEcCCCc-----HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--
Q 040253            4 IAETVCVTGASGF-IGSWLIMRLLERGYAVRATVRDPDN-----KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--   75 (338)
Q Consensus         4 ~~~~ilVtGatG~-iG~~l~~~L~~~g~~V~~~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--   75 (338)
                      .+|+++||||++- ||.++++.|++.|.+|++.+|+.+.     ...+.....  ....++..+.+|++|.+++.+++  
T Consensus      2135 ~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~--~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D         2135 XDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHA--RFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp             CCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHC--CTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHh--hcCCeEEEEEecCCCHHHHHHHHHH
Confidence            4689999999999 9999999999999999999998765     222222221  11246788999999998876653  


Q ss_pred             ---------CCccEEEEeccc----CCC------CCCCccchh----hhhhhHHHHHHHHHHHh----CC--CccEEEEe
Q 040253           76 ---------RGCTGVFHLATP----MDF------ESKDPENEV----IRPTINGMVSIMRACKN----AK--TVRRLVFT  126 (338)
Q Consensus        76 ---------~~~d~vi~~a~~----~~~------~~~~~~~~~----~~~n~~~~~~l~~~~~~----~~--~~~~~v~~  126 (338)
                               .++|++||+||.    ...      ...+..+..    +++|+.++..++.++..    .+  ....++..
T Consensus      2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D         2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp             HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred             HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence                     258999999996    111      011122222    77888888877766543    22  01122222


Q ss_pred             cCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH--c--CccEEEEcCCceeCCCCCCCC
Q 040253          127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE--N--NIDFISIIPSLVVGPFLTSSM  202 (338)
Q Consensus       127 Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~--~~~~~ilRp~~v~G~~~~~~~  202 (338)
                      +|. ..+       .+               .....|+.||.+.+.+.+.++.+  .  +++++.+.||.+-+.......
T Consensus      2293 ~ss-~~g-------~~---------------g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~ 2349 (3089)
T 3zen_D         2293 GSP-NRG-------MF---------------GGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQN 2349 (3089)
T ss_dssp             ECS-STT-------SC---------------SSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTT
T ss_pred             CCc-ccc-------cC---------------CCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccc
Confidence            211 110       00               01237999999999999999998  3  688999999988754322111


Q ss_pred             ChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCC----CC-ce-EE-ec--C-CCCHHHHHHHHHH
Q 040253          203 PPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA----KG-RY-IC-SS--H-PATILELAKFLRE  269 (338)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~----~~-~~-~~-~~--~-~~t~~e~~~~i~~  269 (338)
                      .. ......   ..+        ......+|+|.+++.++.....    +. ++ .+ ++  . ...+.++.+.+++
T Consensus      2350 ~~-~~~~~~---~~~--------~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~~ 2414 (3089)
T 3zen_D         2350 DA-IVSAVE---EAG--------VTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKARE 2414 (3089)
T ss_dssp             TT-THHHHG---GGS--------CBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHHH
T ss_pred             hh-HHHHHH---hcC--------CCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHHH
Confidence            11 111111   100        1233889999999998864321    11 22 22 22  2 3688888876543

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=99.02  E-value=7.8e-10  Score=95.92  Aligned_cols=168  Identities=13%  Similarity=0.055  Sum_probs=97.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEc--CCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY--AVRATVR--DPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |||+||||+|++|++++..|+..|.  ++..+++  +.+..+. ..++........++++...      + .++++++|+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~------~-~~a~~~aDv   73 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG------G-YEDTAGSDV   73 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEEC------C-GGGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeC------C-HHHhCCCCE
Confidence            5899999999999999999998875  5777766  4322111 1111110000122333321      1 456889999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |||+|+........ ..+++..|+..+.++++++.+.+ ...+|+++|--+--   .........          .-++.
T Consensus        74 Vi~~ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv~SNPv~~---~~~~~~~~~----------~~p~~  138 (303)
T 1o6z_A           74 VVITAGIPRQPGQT-RIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNPVDL---LNRHLYEAG----------DRSRE  138 (303)
T ss_dssp             EEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSSHHH---HHHHHHHHS----------SSCGG
T ss_pred             EEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEeCChHHH---HHHHHHHHc----------CCCHH
Confidence            99999865433332 23678999999999999999998 55666666531100   000000000          01122


Q ss_pred             chHHH-HHHHHHHHHHHHHHHcCccEEEEcCCceeCC
Q 040253          161 WMYFV-SKTLAEQAAWKFAEENNIDFISIIPSLVVGP  196 (338)
Q Consensus       161 ~~Y~~-sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~  196 (338)
                      ...|. +-+..-++-..+++..|++..-++ ..++|.
T Consensus       139 rviG~gt~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~  174 (303)
T 1o6z_A          139 QVIGFGGRLDSARFRYVLSEEFDAPVQNVE-GTILGE  174 (303)
T ss_dssp             GEEECCHHHHHHHHHHHHHHHHTCCGGGEE-CCEEEC
T ss_pred             HeeecccchhHHHHHHHHHHHhCcCHHHeE-EEEEeC
Confidence            34455 444445555555666677555555 667774

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=99.01  E-value=2.6e-09  Score=93.15  Aligned_cols=167  Identities=11%  Similarity=0.045  Sum_probs=102.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEc--CCCcHHH----HHHHhcCCCCCCcEEEEecccCCC-CCchhhhC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY--AVRATVR--DPDNKKK----VKHLLELPKASTHLTLWKADLAEE-GNFDEPIR   76 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~   76 (338)
                      |||+||||+||+|++++..|+.+|.  ++..+++  +......    +.+..  +....++     ++.+. +++.++++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~--~~~~~~~-----~i~~~~d~l~~al~   73 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDAL--AGTRSDA-----NIYVESDENLRIID   73 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHH--TTSCCCC-----EEEEEETTCGGGGT
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhH--HhcCCCe-----EEEeCCcchHHHhC
Confidence            5899999999999999999998874  5777776  3321211    11111  1000112     23222 34678899


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      ++|+|||+|+........ ...++..|+..+.++++++++++ ..+++.+|.. +.-        .++-.     .....
T Consensus        74 gaD~Vi~~Ag~~~~~g~~-r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNP-v~~--------~t~~~-----~k~~~  137 (313)
T 1hye_A           74 ESDVVIITSGVPRKEGMS-RMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNP-VDV--------MTYKA-----LVDSK  137 (313)
T ss_dssp             TCSEEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSS-HHH--------HHHHH-----HHHHC
T ss_pred             CCCEEEECCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCc-HHH--------HHHHH-----HHhhC
Confidence            999999999965433333 24689999999999999999987 4445444432 110        00000     00001


Q ss_pred             cCCCchHHH-HHHHHHHHHHHHHHHcCccEEEEcCCceeCC
Q 040253          157 KMTGWMYFV-SKTLAEQAAWKFAEENNIDFISIIPSLVVGP  196 (338)
Q Consensus       157 ~~p~~~Y~~-sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~  196 (338)
                      .+|...+|. +.+...++...+++..|++..-++. .++|.
T Consensus       138 ~p~~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G~  177 (313)
T 1hye_A          138 FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGE  177 (313)
T ss_dssp             CCTTSEEECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEEC
T ss_pred             cChhcEEEeCccHHHHHHHHHHHHHhCcCHHHeEE-EEeec
Confidence            124456777 7777777777777777876555554 55563

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=98.82  E-value=1.9e-09  Score=92.96  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++++||||+|.+|+++++.|++.|++|++++|+.++...+.......   .++.++.+|++|.+++.++++++|+|||
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~DvlVn  194 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFVFT  194 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence            4689999999999999999999999999999999866544443221100   1356778899999888888999999999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +++.
T Consensus       195 ~ag~  198 (287)
T 1lu9_A          195 AGAI  198 (287)
T ss_dssp             CCCT
T ss_pred             CCCc
Confidence            9974

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.82  E-value=4.8e-09  Score=80.44  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=72.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi   82 (338)
                      ++++|+|+|+ |.+|+.+++.|.+.|++|++++|+++....   +..     .+...+.+|..+.+.+.++ +.++|+||
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~---~~~-----~~~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNA---YAS-----YATHAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHT---TTT-----TCSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH---HHH-----hCCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            3568999997 999999999999999999999987543322   111     2346788999887766665 67899999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT  131 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v  131 (338)
                      ++++.       +    .+.|    ..+.+.++..+ .++++..++...
T Consensus        76 ~~~~~-------~----~~~~----~~~~~~~~~~~-~~~ii~~~~~~~  108 (144)
T 2hmt_A           76 VAIGA-------N----IQAS----TLTTLLLKELD-IPNIWVKAQNYY  108 (144)
T ss_dssp             ECCCS-------C----HHHH----HHHHHHHHHTT-CSEEEEECCSHH
T ss_pred             ECCCC-------c----hHHH----HHHHHHHHHcC-CCeEEEEeCCHH
Confidence            98863       1    1122    23556677777 567776665443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.77  E-value=8.3e-09  Score=79.00  Aligned_cols=77  Identities=18%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCc
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGC   78 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~   78 (338)
                      |.. +|++|+|+|+ |++|+++++.|.+.|++|++++++++....+..        .++.++.+|.++++.+.++ +.++
T Consensus         1 m~~~~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~~   71 (141)
T 3llv_A            1 MTENGRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED--------EGFDAVIADPTDESFYRSLDLEGV   71 (141)
T ss_dssp             -----CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEECCTTCHHHHHHSCCTTC
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------CCCcEEECCCCCHHHHHhCCcccC
Confidence            443 3678999996 999999999999999999999998766554433        3578899999999887765 4589


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||.+.+
T Consensus        72 d~vi~~~~   79 (141)
T 3llv_A           72 SAVLITGS   79 (141)
T ss_dssp             SEEEECCS
T ss_pred             CEEEEecC
Confidence            99997765

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.72  E-value=2.1e-08  Score=89.54  Aligned_cols=95  Identities=22%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ...|||+|+|| |++|+.+++.|.+ .++|.+.+|+.++.++..         +.+..+..|+.|.+++.++++++|+||
T Consensus        14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~---------~~~~~~~~d~~d~~~l~~~~~~~DvVi   82 (365)
T 3abi_A           14 GRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK---------EFATPLKVDASNFDKLVEVMKEFELVI   82 (365)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT---------TTSEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh---------ccCCcEEEecCCHHHHHHHHhCCCEEE
Confidence            34579999998 9999999998854 589999999866554432         356788999999999999999999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +++++.           +      ...++++|.+.+  ++++=+|
T Consensus        83 ~~~p~~-----------~------~~~v~~~~~~~g--~~yvD~s  108 (365)
T 3abi_A           83 GALPGF-----------L------GFKSIKAAIKSK--VDMVDVS  108 (365)
T ss_dssp             ECCCGG-----------G------HHHHHHHHHHHT--CEEEECC
T ss_pred             EecCCc-----------c------cchHHHHHHhcC--cceEeee
Confidence            998631           1      246888898888  5777655

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.72  E-value=8.1e-08  Score=73.10  Aligned_cols=75  Identities=17%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi   82 (338)
                      ..|+|+|+|+ |++|+.+++.|.+.|++|++++|+++....+...       .++..+.+|..+.+.+.+. +.++|+||
T Consensus         3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-------~~~~~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-------IDALVINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------CSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-------cCcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence            3579999986 9999999999999999999999976554443321       1456788898877766544 67899999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      ++..
T Consensus        75 ~~~~   78 (140)
T 1lss_A           75 AVTG   78 (140)
T ss_dssp             ECCS
T ss_pred             EeeC
Confidence            9864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.71  E-value=2.5e-07  Score=80.50  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=81.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      |||.|+||+|++|+.++..|+..|  .+|.++++++ .......+.... ...++....+    .+++.++++++|+||+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~-~~~~a~dL~~~~-~~~~l~~~~~----t~d~~~a~~~aDvVvi   74 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-TPGVAADLSHIE-TRATVKGYLG----PEQLPDCLKGCDVVVI   74 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-HHHHHHHHTTSS-SSCEEEEEES----GGGHHHHHTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc-cHHHHHHHhccC-cCceEEEecC----CCCHHHHhCCCCEEEE
Confidence            589999999999999999999888  7899999987 222222232211 0011222211    1346678999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +++.......+. .++...|+..+..+++.+.+..+..++|++|..
T Consensus        75 ~ag~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNP  119 (314)
T 1mld_A           75 PAGVPRKPGMTR-DDLFNTNATIVATLTAACAQHCPDAMICIISNP  119 (314)
T ss_dssp             CCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred             CCCcCCCCCCcH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCC
Confidence            998655333333 367899999999999999887745688887653

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.67  E-value=2.7e-08  Score=89.83  Aligned_cols=101  Identities=17%  Similarity=0.195  Sum_probs=74.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC--cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG--CT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d   79 (338)
                      |++|+|+|| |++|+.+++.|++.|   .+|.+.+|+.++...+........ ..++..+.+|++|.+++.+++++  +|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            479999998 999999999999988   389999998776655543221100 13578999999999999999886  99


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEe
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT  126 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~  126 (338)
                      +|||+++...                 ...++++|.+.+ + +++-+
T Consensus        79 vVin~ag~~~-----------------~~~v~~a~l~~g-~-~vvD~  106 (405)
T 4ina_A           79 IVLNIALPYQ-----------------DLTIMEACLRTG-V-PYLDT  106 (405)
T ss_dssp             EEEECSCGGG-----------------HHHHHHHHHHHT-C-CEEES
T ss_pred             EEEECCCccc-----------------ChHHHHHHHHhC-C-CEEEe
Confidence            9999987411                 145677787777 3 44433

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.64  E-value=4.8e-08  Score=85.44  Aligned_cols=118  Identities=11%  Similarity=0.084  Sum_probs=79.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--e-----EEEEEcCCC--cH-HHHHHHhcCCCCCCcEEEEecccCCCCCchhh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--A-----VRATVRDPD--NK-KKVKHLLELPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~-----V~~~~r~~~--~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      .+||+||||+|+||++++..|+..|.  +     +..+++++.  .. ....++....  .+...    ++.......+.
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~--~~~~~----~~~~~~~~~~~   76 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA--LPLLK----DVIATDKEEIA   76 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC--CTTEE----EEEEESCHHHH
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhh--hcccC----CEEEcCCcHHH
Confidence            57999999999999999999988764  4     777777542  11 1111221100  01111    22223445677


Q ss_pred             hCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCcc-EEEEecCc
Q 040253           75 IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR-RLVFTSSA  129 (338)
Q Consensus        75 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~Ss~  129 (338)
                      ++++|+||++||.......+. .++++.|+..+..+++++.+++... +++.+|..
T Consensus        77 ~~daDvVvitAg~prkpG~tR-~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNP  131 (333)
T 5mdh_A           77 FKDLDVAILVGSMPRRDGMER-KDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNP  131 (333)
T ss_dssp             TTTCSEEEECCSCCCCTTCCT-TTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             hCCCCEEEEeCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence            889999999998654333333 3779999999999999999988333 68877763

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.61  E-value=2.9e-08  Score=90.69  Aligned_cols=105  Identities=22%  Similarity=0.261  Sum_probs=74.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +++|+|+| +|++|+++++.|++.|++|++++|+.++...+   ..   ..+++..+.+|+.|.+++.++++++|+|||+
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~l---a~---~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKL---SA---GVQHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHT---TT---TCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHH---HH---hcCCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            57999998 89999999999999999999999975443322   11   1134778899999988888889999999999


Q ss_pred             cccCCCCCCCccchhhh--hh-------hHHHHHHHHHHHhCC
Q 040253           85 ATPMDFESKDPENEVIR--PT-------INGMVSIMRACKNAK  118 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~--~n-------~~~~~~l~~~~~~~~  118 (338)
                      ++......  .....++  .|       ......+++++++.+
T Consensus        76 a~~~~~~~--i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aG  116 (450)
T 1ff9_A           76 IPYTFHAT--VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAG  116 (450)
T ss_dssp             CC--CHHH--HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTT
T ss_pred             CccccchH--HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCC
Confidence            97532100  0001111  11       235678889999888

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.53  E-value=2.1e-07  Score=72.11  Aligned_cols=76  Identities=20%  Similarity=0.350  Sum_probs=60.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC-CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP-DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi   82 (338)
                      .++|+|+|+ |.+|+++++.|.+.|++|+++++++ +..+.+.....     .++.++.+|.+|++.+.++ ++++|+||
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            468999985 9999999999999999999999975 32333332211     3678999999999888876 78999999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      .+.+
T Consensus        77 ~~~~   80 (153)
T 1id1_A           77 ALSD   80 (153)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            7765

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=98.52  E-value=5.1e-07  Score=79.31  Aligned_cols=82  Identities=11%  Similarity=-0.023  Sum_probs=61.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHH-HCCCeEEEEEcCCCcHH------------HHHHHhcCCCCCCcEEEEecccCCCCCc
Q 040253            5 AETVCVTGASGFIGSWLIMRLL-ERGYAVRATVRDPDNKK------------KVKHLLELPKASTHLTLWKADLAEEGNF   71 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~Dl~d~~~~   71 (338)
                      +|++|||||+.-+|.+.+..|+ ..|..|+++.+..+..+            .......  ........+.+|+.|.+.+
T Consensus        50 pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~--~~G~~a~~i~~Dv~d~e~i  127 (401)
T 4ggo_A           50 PKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAK--REGLYSVTIDGDAFSDEIK  127 (401)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHH--HHTCCEEEEESCTTSHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHH--HcCCCceeEeCCCCCHHHH
Confidence            6899999999999999999998 56899999988543221            1111100  0124678999999999887


Q ss_pred             hhhhC-------CccEEEEecccC
Q 040253           72 DEPIR-------GCTGVFHLATPM   88 (338)
Q Consensus        72 ~~~~~-------~~d~vi~~a~~~   88 (338)
                      .++++       ++|++||.+|..
T Consensus       128 ~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          128 AQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEecccc
Confidence            77663       799999999854

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.48  E-value=1.4e-06  Score=75.93  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=80.4

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHH-HHHhc-CCCCCCcEEEEecccCCCCCchhhhC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKV-KHLLE-LPKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      |+..++||.|+|+ |.+|+.++..|+..|.  +|.+++++.+..+.. .++.. .+....++.....|       .++++
T Consensus         1 m~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a~~   72 (326)
T 3pqe_A            1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT-------YEDCK   72 (326)
T ss_dssp             -CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC-------GGGGT
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc-------HHHhC
Confidence            6666789999995 9999999999999886  899999876543331 11111 11111233433322       25678


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ++|+||.++|.......+ -.+++..|+.....+.+.+.+..+...++.+|.
T Consensus        73 ~aDvVvi~ag~p~kpG~~-R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           73 DADIVCICAGANQKPGET-RLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             TCSEEEECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCEEEEecccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            999999999854332222 236789999999999999988874556776664

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.44  E-value=1.4e-07  Score=86.37  Aligned_cols=76  Identities=17%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+++|+|+|+ |++|+.+++.|++. |++|++++|+.++...+...       .++..+.+|+.|.+++.++++++|+||
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-------~~~~~~~~D~~d~~~l~~~l~~~DvVI   93 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-------SGSKAISLDVTDDSALDKVLADNDVVI   93 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-------GTCEEEECCTTCHHHHHHHHHTSSEEE
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-------cCCcEEEEecCCHHHHHHHHcCCCEEE
Confidence            4689999997 99999999999998 78999999986655444321       245777899999888888889999999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      |+++.
T Consensus        94 n~tp~   98 (467)
T 2axq_A           94 SLIPY   98 (467)
T ss_dssp             ECSCG
T ss_pred             ECCch
Confidence            99874

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.44  E-value=1e-06  Score=68.39  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=57.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi   82 (338)
                      ..++|+|+|+ |.+|+.+++.|.+.|++|++++|+++....+..       ..++..+.+|..+.+.+.++ +.++|+||
T Consensus        18 ~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-------~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           18 KSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-------EFSGFTVVGDAAEFETLKECGMEKADMVF   89 (155)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-------TCCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-------cCCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence            3579999985 999999999999999999999998765433210       03456778888776666554 67899999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      .+.+
T Consensus        90 ~~~~   93 (155)
T 2g1u_A           90 AFTN   93 (155)
T ss_dssp             ECSS
T ss_pred             EEeC
Confidence            8875

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.40  E-value=2.7e-07  Score=75.69  Aligned_cols=75  Identities=20%  Similarity=0.307  Sum_probs=52.8

Q ss_pred             CCcEEEEeCC----------------chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            4 IAETVCVTGA----------------SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      .+|+||||||                ||.+|.++++.|+++|++|+++.|.......      .+   .++..+.  +.+
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~------~~---~~~~~~~--v~s   70 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE------PH---PNLSIRE--ITN   70 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC------CC---TTEEEEE--CCS
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------CC---CCeEEEE--HhH
Confidence            4789999999                9999999999999999999999986432110      01   2454443  333


Q ss_pred             CCCc----hhhhCCccEEEEecccCC
Q 040253           68 EGNF----DEPIRGCTGVFHLATPMD   89 (338)
Q Consensus        68 ~~~~----~~~~~~~d~vi~~a~~~~   89 (338)
                      .+++    .+.+.++|++||+||...
T Consensus        71 ~~em~~~v~~~~~~~Dili~aAAvsD   96 (232)
T 2gk4_A           71 TKDLLIEMQERVQDYQVLIHSMAVSD   96 (232)
T ss_dssp             HHHHHHHHHHHGGGCSEEEECSBCCS
T ss_pred             HHHHHHHHHHhcCCCCEEEEcCcccc
Confidence            3322    233457999999999654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.37  E-value=6.4e-07  Score=78.46  Aligned_cols=117  Identities=9%  Similarity=0.043  Sum_probs=76.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      .++||.|+|++|++|+.++..|+.+|  .+|.+++++.++.+. ..++.....  +.     .++.-..++.++++++|+
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~--~~-----~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGF--EG-----LNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCC--TT-----CCCEEESCHHHHHTTEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcC--CC-----CceEEcCCHHHHhCCCCE
Confidence            36799999999999999999999988  589999886543332 111111010  10     122222456678899999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCcc-EEEEecC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR-RLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~Ss  128 (338)
                      ||.+||.......+ -.+++..|+.....+.+.+.+..+.. .++.+|.
T Consensus        80 VvitaG~p~kpG~~-R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN  127 (343)
T 3fi9_A           80 IVSSGGAPRKEGMT-REDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN  127 (343)
T ss_dssp             EEECCC-------C-HHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             EEEccCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence            99999864432222 23678999999999999998877334 3566664

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.33  E-value=1.8e-06  Score=69.02  Aligned_cols=73  Identities=14%  Similarity=0.101  Sum_probs=59.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh--hCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP--IRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~--~~~~d~v   81 (338)
                      .++|+|+| .|.+|..+++.|.+. |++|++++|+++....+..        .++..+.+|.++.+.+.++  ++++|+|
T Consensus        39 ~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~--------~g~~~~~gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           39 HAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS--------EGRNVISGDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH--------TTCCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH--------CCCCEEEcCCCCHHHHHhccCCCCCCEE
Confidence            46899998 699999999999999 9999999998766554432        3567888999888777776  7789999


Q ss_pred             EEecc
Q 040253           82 FHLAT   86 (338)
Q Consensus        82 i~~a~   86 (338)
                      |.+.+
T Consensus       110 i~~~~  114 (183)
T 3c85_A          110 LLAMP  114 (183)
T ss_dssp             EECCS
T ss_pred             EEeCC
Confidence            98765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.33  E-value=6.7e-07  Score=73.65  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=60.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      |+|+|+|+ |.+|+++++.|.+.|++|++++++++....+...       .++.++.+|.++.+.+.++ ++++|+||-+
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            58999995 9999999999999999999999987765554321       3568899999999888776 6789999966


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      .+
T Consensus        73 ~~   74 (218)
T 3l4b_C           73 TP   74 (218)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.31  E-value=9e-07  Score=67.43  Aligned_cols=73  Identities=12%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~   83 (338)
                      .++|+|+| .|.+|+.+++.|.+.|++|++++++++..+.+..        .++..+.+|.++++.+.++ +.++|+||-
T Consensus         7 ~~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            46899998 5999999999999999999999998876655543        4678899999998877665 568999987


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.+
T Consensus        78 ~~~   80 (140)
T 3fwz_A           78 TIP   80 (140)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            764

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=98.20  E-value=6.1e-07  Score=76.26  Aligned_cols=80  Identities=19%  Similarity=0.183  Sum_probs=46.6

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      |+..+++|.|+|++|.+|+.+++.+.+. |+++.++.+.......-+.....    .++  -..++...+++.+++.++|
T Consensus         1 ~~~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~----~g~--~~~~v~~~~dl~~~l~~~D   74 (273)
T 1dih_A            1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGEL----AGA--GKTGVTVQSSLDAVKDDFD   74 (273)
T ss_dssp             -CCCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCS----SSS--SCCSCCEESCSTTTTTSCS
T ss_pred             CCCCCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHH----cCC--CcCCceecCCHHHHhcCCC
Confidence            6766789999999999999999998754 67877555432211000000000    000  0112222344556666899


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +||+++.
T Consensus        75 vVIDft~   81 (273)
T 1dih_A           75 VFIDFTR   81 (273)
T ss_dssp             EEEECSC
T ss_pred             EEEEcCC
Confidence            9998875

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.18  E-value=7.9e-06  Score=71.01  Aligned_cols=116  Identities=12%  Similarity=0.101  Sum_probs=68.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      .++||.|+|+ |.+|+.++..|+..|.  ++.+++++++..+.. .++........++.....|       .++++++|+
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~~~aDi   79 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE-------YSDAKDADL   79 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GGGGTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc-------HHHhcCCCE
Confidence            4689999995 9999999999998885  899998865543321 1121111000233333322       356889999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||.+||.......+. .++++.|+.....+.+.+.++.+...++.+|.
T Consensus        80 Vvi~ag~~~kpG~tR-~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           80 VVITAGAPQKPGETR-LDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             EEECCCCC-----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             EEECCCCCCCCCchH-HHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence            999998643222222 36788899999999999988874566776664

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.18  E-value=1.4e-05  Score=69.55  Aligned_cols=116  Identities=10%  Similarity=0.111  Sum_probs=72.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      +++||.|+|+ |++|..++..|+..|.  +|.+++++.+..+. ...+........++++..      .+ .++++++|+
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~------~~-~~a~~~aDv   77 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA------GD-YSDVKDCDV   77 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--------C-GGGGTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE------CC-HHHhCCCCE
Confidence            4579999997 9999999999999886  89999987654332 222221110112333221      11 356889999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||.+++........ -.++...|+.....+.+.+.+..+...++.+|.
T Consensus        78 Vii~~g~p~k~g~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  124 (318)
T 1y6j_A           78 IVVTAGANRKPGET-RLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  124 (318)
T ss_dssp             EEECCCC------C-HHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             EEEcCCCCCCCCcC-HHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            99999854322222 235678899999999999988763455665543

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.15  E-value=1.7e-06  Score=70.79  Aligned_cols=73  Identities=15%  Similarity=0.149  Sum_probs=52.9

Q ss_pred             CCcEEEEeCC----------------chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            4 IAETVCVTGA----------------SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      .+|+||||||                ||.+|.++++.|+++|++|+++.+.....        .+   .++.  ..|+.+
T Consensus         7 ~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~--------~~---~g~~--~~dv~~   73 (226)
T 1u7z_A            7 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP--------TP---PFVK--RVDVMT   73 (226)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC--------CC---TTEE--EEECCS
T ss_pred             CCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccc--------cC---CCCe--EEccCc
Confidence            3689999999                69999999999999999999988754210        01   2333  346666


Q ss_pred             CCCchhh----hCCccEEEEecccCC
Q 040253           68 EGNFDEP----IRGCTGVFHLATPMD   89 (338)
Q Consensus        68 ~~~~~~~----~~~~d~vi~~a~~~~   89 (338)
                      .+++.+.    +.++|++||+||...
T Consensus        74 ~~~~~~~v~~~~~~~Dili~~Aav~d   99 (226)
T 1u7z_A           74 ALEMEAAVNASVQQQNIFIGCAAVAD   99 (226)
T ss_dssp             HHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             HHHHHHHHHHhcCCCCEEEECCcccC
Confidence            5544333    347999999998643

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.14  E-value=1.7e-05  Score=68.82  Aligned_cols=115  Identities=10%  Similarity=0.087  Sum_probs=70.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH-HHHhcCC-CCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV-KHLLELP-KASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ++||.|+|| |.+|..++..|+..|+ +|.+++++++..+.. ..+.... ......++.     ...++ ++++++|+|
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~-----~t~d~-~a~~~aD~V   74 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT-----GTNNY-ADTANSDVI   74 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE-----EESCG-GGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEE-----ECCCH-HHHCCCCEE
Confidence            479999998 9999999999999996 888888877654332 1121100 000011111     11234 568899999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      |.+++......... .++...|......+.+.+.+..+...++.+|
T Consensus        75 i~a~g~p~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  119 (309)
T 1ur5_A           75 VVTSGAPRKPGMSR-EDLIKVNADITRACISQAAPLSPNAVIIMVN  119 (309)
T ss_dssp             EECCCC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred             EEcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence            99998544222221 2567888888899999998876233444443

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.14  E-value=8.8e-06  Score=70.49  Aligned_cols=118  Identities=19%  Similarity=0.146  Sum_probs=78.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC--CcHHHH-HHHhc-CC--CCCCcEEEEecccCCCCCchh
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP--DNKKKV-KHLLE-LP--KASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~-~~~~~-~~--~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      |++..++|.|+|+ |.+|+.++..|+..|+ +|.++++++  ...... .++.. .+  ....++.. ..|       .+
T Consensus         4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~-t~d-------~~   74 (315)
T 3tl2_A            4 MTIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG-TSD-------YA   74 (315)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE-ESC-------GG
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE-cCC-------HH
Confidence            5555679999996 9999999999999998 999999873  222111 11110 00  00011111 111       25


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .++++|+||-++|.......+. .+++..|+...+.+.+.+.+..+...++.+|.
T Consensus        75 a~~~aDvVIiaag~p~kpg~~R-~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           75 DTADSDVVVITAGIARKPGMSR-DDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             HhCCCCEEEEeCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            6789999999998654333333 37789999999999999988764456776664

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=98.12  E-value=3.7e-05  Score=66.45  Aligned_cols=172  Identities=13%  Similarity=0.066  Sum_probs=101.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC-C--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER-G--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |||.|+||+|.+|+.++..|..+ +  .++..+++++.......++...+. ..++..+.+     +...+.++++|+||
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~-~~~v~~~~~-----~~~~~~~~~aDivi   74 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPT-AVKIKGFSG-----EDATPALEGADVVL   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCS-SEEEEEECS-----SCCHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCC-CceEEEecC-----CCcHHHhCCCCEEE
Confidence            58999999999999999999875 4  578888887622222222222110 011221211     23457788999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCc-CCCCCCchhhhhhcc-CCC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVY-DETSWSDLDFVRSVK-MTG  160 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~-~e~~~~~~~~~~~~~-~p~  160 (338)
                      -+||.......+. .++++.|+.....+.+.+.++.+...++.+|...-.-      .++ .|.      ...... ++.
T Consensus        75 i~ag~~rkpG~~R-~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~------t~~a~~~------~k~sg~~p~~  141 (312)
T 3hhp_A           75 ISAGVARKPGMDR-SDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTT------VAIAAEV------LKKAGVYDKN  141 (312)
T ss_dssp             ECCSCSCCTTCCH-HHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHH------HHHHHHH------HHHTTCCCTT
T ss_pred             EeCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhH------HHHHHHH------HHHcCCCCcc
Confidence            9998654333333 4788999999999999998876445677766531100      000 000      000000 233


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCC
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPF  197 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~  197 (338)
                      ...|..-+..-++-..+++..|++..-++ ..|.|..
T Consensus       142 rv~G~~~LD~~R~~~~la~~lgv~~~~v~-~~V~G~H  177 (312)
T 3hhp_A          142 KLFGVTTLDIIRSNTFVAELKGKQPGEVE-VPVIGGH  177 (312)
T ss_dssp             SEEECCHHHHHHHHHHHHHHHTCCGGGCC-CCEEECS
T ss_pred             eEEEEechhHHHHHHHHHHHhCcChhHcc-eeEEecc
Confidence            34455533344555556666677666666 6677765

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.08  E-value=1.8e-05  Score=69.28  Aligned_cols=119  Identities=13%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH-HHHhc-CCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV-KHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ++|||.|+|| |.+|..++..|...|+ +|.+++++++..+.. ..+.. .... .    ....+.-..++.++++++|+
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~-~----~~~~i~~t~d~~ea~~~aDi   81 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVV-D----TNVSVRAEYSYEAALTGADC   81 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHT-T----CCCCEEEECSHHHHHTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhcc-C----CCCEEEEeCCHHHHhCCCCE
Confidence            3479999997 9999999999999998 999999987655441 11111 0000 0    00111112445567899999


Q ss_pred             EEEecccCCCCCCC----ccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           81 VFHLATPMDFESKD----PENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||-+++........    ........|+.....+.+.+.+..+...++.+|.
T Consensus        82 Vi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  133 (331)
T 1pzg_A           82 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  133 (331)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            99999754322220    1235677888888999998887763345554443

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.06  E-value=4.9e-05  Score=65.13  Aligned_cols=112  Identities=10%  Similarity=0.043  Sum_probs=77.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHH----HHHHhc-CCCCCCcEEEEecccCCCCCchhhhCCc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKK----VKHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (338)
                      |||.|+|+ |.+|..++..|+..|+  +|.+++++++..+.    +.+... .+   ....+...     .+ .++++++
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~---~~~~i~~t-----~d-~~a~~~a   70 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGID---KYPKIVGG-----AD-YSLLKGS   70 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTT---CCCEEEEE-----SC-GGGGTTC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcC---CCCEEEEe-----CC-HHHhCCC
Confidence            58999998 9999999999999887  89999997755431    112111 11   11122211     12 4678899


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |+||.+++.......+ -.+++..|+...+.+.+.+.+..+...++.+|.
T Consensus        71 DiVViaag~~~kpG~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           71 EIIVVTAGLARKPGMT-RLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             SEEEECCCCCCCSSCC-HHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CEEEECCCCCCCCCCc-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            9999999854332222 236788999999999999998875567777775

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.04  E-value=6.7e-05  Score=65.18  Aligned_cols=115  Identities=10%  Similarity=0.072  Sum_probs=76.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHH----HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKK----VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (338)
                      .++||.|+|+ |.+|..++..|+..|. +|.+++++++..+.    +.+......  ....+..     ..+. ++++++
T Consensus         6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~--~~~~v~~-----t~d~-~a~~~a   76 (324)
T 3gvi_A            6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDG--FDAKFTG-----ANDY-AAIEGA   76 (324)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHT--CCCCEEE-----ESSG-GGGTTC
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcC--CCCEEEE-----eCCH-HHHCCC
Confidence            3579999997 9999999999999988 99999998765432    111110000  0111111     1122 678899


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |+||.+++.......+. .+++..|+.....+.+.+.+..+-..++.+|.
T Consensus        77 DiVIiaag~p~k~G~~R-~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           77 DVVIVTAGVPRKPGMSR-DDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SEEEECCSCCCC------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CEEEEccCcCCCCCCCH-HHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            99999998543322222 36788899999999999988774457776665

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.97  E-value=3.2e-05  Score=67.21  Aligned_cols=116  Identities=12%  Similarity=0.072  Sum_probs=77.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH-HHHhcCC-CCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV-KHLLELP-KASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ++||.|+| +|.+|+.++..|+..|. +|.+++++++..+.. ..+.... ....+..+...     .+ .++++++|+|
T Consensus         5 ~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t-----~d-~~a~~~aDvV   77 (321)
T 3p7m_A            5 RKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT-----ND-YKDLENSDVV   77 (321)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-----SC-GGGGTTCSEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc-----CC-HHHHCCCCEE
Confidence            57999999 59999999999999887 999999987654322 1221110 00011122111     11 2578899999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |.+++........ -.+++..|+.....+.+.+.+..+-..++.+|.
T Consensus        78 Ii~ag~p~k~G~~-R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  123 (321)
T 3p7m_A           78 IVTAGVPRKPGMS-RDDLLGINIKVMQTVGEGIKHNCPNAFVICITN  123 (321)
T ss_dssp             EECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEcCCcCCCCCCC-HHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            9999854432222 236788899999999999988774457776664

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.97  E-value=4.3e-06  Score=68.43  Aligned_cols=73  Identities=15%  Similarity=0.183  Sum_probs=51.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|+|+||+|++|+.+++.|.+.|++|.+++|+++..+.+......     .+.  ..|+. ..++.++++++|+||++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~--~~~~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR-----IAG--DASIT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH-----HHS--SCCEE-EEEHHHHHHHCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----ccc--cCCCC-hhhHHHHHhcCCEEEEeC
Confidence            4899999999999999999999999999999986654443321100     000  02232 234556677899999987


Q ss_pred             c
Q 040253           86 T   86 (338)
Q Consensus        86 ~   86 (338)
                      .
T Consensus        73 ~   73 (212)
T 1jay_A           73 P   73 (212)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.95  E-value=0.00013  Score=63.44  Aligned_cols=117  Identities=13%  Similarity=0.089  Sum_probs=78.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ..++|.|+|+ |.+|+.++..|+.+|.  ++..++++....+.. .++............+..     .++ +.++++|+
T Consensus        18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~-----~d~-~~~~~aDi   90 (331)
T 4aj2_A           18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS-----KDY-SVTANSKL   90 (331)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC-----SSG-GGGTTEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc-----CCH-HHhCCCCE
Confidence            3689999996 9999999999999886  899998875433321 112111000011122221     122 35889999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||.+||.......+. .++++.|+.....+.+.+.++.+...++.+|.
T Consensus        91 Vvi~aG~~~kpG~tR-~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           91 VIITAGARQQEGESR-LNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             EEECCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEccCCCCCCCccH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            999998654333333 37899999999999999988874567777765

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.93  E-value=8.8e-06  Score=65.75  Aligned_cols=98  Identities=15%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh---h--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP---I--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~--~~~   78 (338)
                      .+++|+|+||+|.+|..+++.+...|.+|++++|+++..+..+.+        +... ..|..+.+....+   .  .++
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~--------g~~~-~~d~~~~~~~~~~~~~~~~~~~  108 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL--------GVEY-VGDSRSVDFADEILELTDGYGV  108 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT--------CCSE-EEETTCSTHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc--------CCCE-EeeCCcHHHHHHHHHHhCCCCC
Confidence            368999999999999999999999999999999876544333221        1111 2366555433322   2  259


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      |+||++++.          ..       ....++.++..   .+++.+++..
T Consensus       109 D~vi~~~g~----------~~-------~~~~~~~l~~~---G~~v~~g~~~  140 (198)
T 1pqw_A          109 DVVLNSLAG----------EA-------IQRGVQILAPG---GRFIELGKKD  140 (198)
T ss_dssp             EEEEECCCT----------HH-------HHHHHHTEEEE---EEEEECSCGG
T ss_pred             eEEEECCch----------HH-------HHHHHHHhccC---CEEEEEcCCC
Confidence            999999862          11       23445555544   4899888754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.93  E-value=0.0001  Score=63.74  Aligned_cols=113  Identities=8%  Similarity=0.024  Sum_probs=74.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHH----HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKK----VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      |||.|+|+ |.+|+.++..|+..|.  +|.++++++...+.    +.+......  .+..+...|      ..++++++|
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~--~~~~v~~~~------~~~a~~~aD   71 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHG--FDTRVTGTN------DYGPTEDSD   71 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHT--CCCEEEEES------SSGGGTTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccC--CCcEEEECC------CHHHhCCCC
Confidence            58999996 9999999999998885  89999998765432    111110000  112222111      135788899


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +||-+|+.......+. .+++..|+.....+.+.+.++.+...++.+|.
T Consensus        72 vVii~ag~~~kpG~~R-~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           72 VCIITAGLPRSPGMSR-DDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             EEEECCCC-------C-HHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             EEEECCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            9999998643322222 36789999999999999988874566776664

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.90  E-value=6.5e-06  Score=68.48  Aligned_cols=71  Identities=13%  Similarity=0.108  Sum_probs=58.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~   83 (338)
                      .++|+|+|+ |.+|+.+++.|.+.|+ |++++++++....+.         .++.++.+|.+|++.+.++ ++++|.||.
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR---------SGANFVHGDPTRVSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH---------TTCEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh---------cCCeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence            468999996 9999999999999999 999988876554432         2578999999999888776 789999997


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.+
T Consensus        78 ~~~   80 (234)
T 2aef_A           78 DLE   80 (234)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            654

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.89  E-value=1.7e-05  Score=68.04  Aligned_cols=70  Identities=17%  Similarity=0.229  Sum_probs=51.7

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |+++||+|.|+|++|.+|+.+++.|.+.|++|++.+|+++..+.+...        ++     +..   +..++++++|+
T Consensus         7 ~~~mmm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~--------g~-----~~~---~~~~~~~~aDv   70 (286)
T 3c24_A            7 NDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGM--------GI-----PLT---DGDGWIDEADV   70 (286)
T ss_dssp             CSCCCCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHT--------TC-----CCC---CSSGGGGTCSE
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhc--------CC-----CcC---CHHHHhcCCCE
Confidence            455568999999889999999999999999999998876655444321        11     112   34456778999


Q ss_pred             EEEecc
Q 040253           81 VFHLAT   86 (338)
Q Consensus        81 vi~~a~   86 (338)
                      ||-+..
T Consensus        71 Vi~av~   76 (286)
T 3c24_A           71 VVLALP   76 (286)
T ss_dssp             EEECSC
T ss_pred             EEEcCC
Confidence            997764

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.88  E-value=5.5e-05  Score=65.85  Aligned_cols=120  Identities=12%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHH-HhcC-CCCCCcEEEEecccCCCCCchhhhCC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKH-LLEL-PKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      |+. ++||.|+|| |.+|..++..|+..|+ +|.+++++++..+.... +... ......     ..+....++ +++++
T Consensus         1 m~~-~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~-----~~i~~t~d~-~al~~   72 (322)
T 1t2d_A            1 MAP-KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSN-----CKVSGSNTY-DDLAG   72 (322)
T ss_dssp             -CC-CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCC-----CCEEEECCG-GGGTT
T ss_pred             CCC-CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCC-----cEEEECCCH-HHhCC
Confidence            543 579999997 9999999999999997 88888888765443211 1110 000001     111111334 66889


Q ss_pred             ccEEEEecccCCCCCCC----ccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           78 CTGVFHLATPMDFESKD----PENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +|+||-+++........    ...++...|+.....+.+.+.+..+-..++.+|.
T Consensus        73 aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  127 (322)
T 1t2d_A           73 ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  127 (322)
T ss_dssp             CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99999999754321111    0235677788888888888877653456665554

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.88  E-value=7.7e-06  Score=71.92  Aligned_cols=99  Identities=17%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-----C-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEE-EecccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-----Y-AVRATVRDPDNKKKVKHLLELPKASTHLTL-WKADLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~d~~~~~~~~~~   77 (338)
                      |+||+|.||||++|+.+++.|.+++     + +++.+.+..+....+....      +++.. ...++.+.+  .+.+.+
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~------~~l~~~~~~~~~~~~--~~~~~~   80 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHH------PHLTPLAHRVVEPTE--AAVLGG   80 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTC------TTCGGGTTCBCEECC--HHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhc------ccccccceeeeccCC--HHHhcC
Confidence            5799999999999999999999877     4 6777764332211111110      11100 011121221  234568


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT  131 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v  131 (338)
                      +|+||.+.+...                 +..++..+ +.|  .++|-+|+...
T Consensus        81 ~DvVf~alg~~~-----------------s~~~~~~~-~~G--~~vIDlSa~~R  114 (352)
T 2nqt_A           81 HDAVFLALPHGH-----------------SAVLAQQL-SPE--TLIIDCGADFR  114 (352)
T ss_dssp             CSEEEECCTTSC-----------------CHHHHHHS-CTT--SEEEECSSTTT
T ss_pred             CCEEEECCCCcc-----------------hHHHHHHH-hCC--CEEEEECCCcc
Confidence            999998887411                 24566677 667  47899998754

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.88  E-value=0.00015  Score=63.05  Aligned_cols=116  Identities=13%  Similarity=0.103  Sum_probs=75.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHH-HHHhc-CCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKV-KHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      +++||.|+|| |.+|..++..|+.+|  .+|.+++++++..+.. ..+.. .+.....+++.. |      ..++++++|
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~------~~~a~~~aD   76 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G------EYSDCHDAD   76 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C------CGGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C------CHHHhCCCC
Confidence            3579999998 999999999999887  4888888875433321 11111 111101223322 1      145688999


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +||.+++.......+. ..+...|+.....+.+.+.+..+-..++.+|.
T Consensus        77 vVvi~ag~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  124 (317)
T 3d0o_A           77 LVVICAGAAQKPGETR-LDLVSKNLKIFKSIVGEVMASKFDGIFLVATN  124 (317)
T ss_dssp             EEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEEECCCCCCCCCCcH-HHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            9999998644322222 35678899999999999888874556666553

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.85  E-value=0.00013  Score=63.41  Aligned_cols=115  Identities=12%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .+||.|+|| |.+|..++..|+..+.  ++..++++.+..+. ..++........++++.. |      -.++++++|+|
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~------~~~a~~~aDvV   76 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G------EYSDCKDADLV   76 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C------CGGGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C------CHHHhCCCCEE
Confidence            379999998 9999999999988875  89999886544432 222211100012333332 1      24568899999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |.+++.......+. .++...|+.....+.+.+.+..+-..++.+|.
T Consensus        77 ii~ag~~~~~g~~R-~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  122 (318)
T 1ez4_A           77 VITAGAPQKPGESR-LDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (318)
T ss_dssp             EECCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            99998543222222 25678899999999999988875567776654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.85  E-value=0.00011  Score=63.93  Aligned_cols=116  Identities=11%  Similarity=0.080  Sum_probs=75.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      +.+||.|+|| |.+|..++..|+..+.  ++..++++.+..+. ..++........++++.. |      -.++++++|+
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~------~~~a~~~aDv   79 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A------EYSDAKDADL   79 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C------CGGGGGGCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C------CHHHhCCCCE
Confidence            3579999998 9999999999988774  89999886544333 222221110112333332 1      1456889999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||.+++.......+. ..+...|+.....+.+.+.++.+-..++.+|.
T Consensus        80 Vii~ag~~~k~g~~R-~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  126 (326)
T 2zqz_A           80 VVITAGAPQKPGETR-LDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             EEECCCCC-----CH-HHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             EEEcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            999998543222222 36678899999999998888764567776654

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.85  E-value=0.00013  Score=62.42  Aligned_cols=115  Identities=10%  Similarity=0.020  Sum_probs=75.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH-HHHHh-cCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK-VKHLL-ELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |||.|+| +|.||+.++-.|+.++  .++..++.++..... ..++. ..+...........  .|+    +.++++|+|
T Consensus         1 MKV~IiG-aG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~----~~~~~aDvV   73 (294)
T 2x0j_A            1 MKLGFVG-AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADY----SLLKGSEII   73 (294)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCG----GGGTTCSEE
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCH----HHhCCCCEE
Confidence            6899999 5999999999998876  478888876532211 11111 11000011122211  112    467889999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |-.||.......+. .++++.|....+.+.+.+.++.+...++.+|.
T Consensus        74 vitAG~prkpGmtR-~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           74 VVTAGLARKPGMTR-LDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             EECCCCCCCSSSCH-HHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             EEecCCCCCCCCch-HHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence            99999665444444 37899999999999999998874556666665

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.84  E-value=0.00028  Score=61.26  Aligned_cols=119  Identities=15%  Similarity=0.172  Sum_probs=76.2

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHH-HHHhc-CCCCCCcEEEEecccCCCCCchhhh
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKV-KHLLE-LPKASTHLTLWKADLAEEGNFDEPI   75 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~   75 (338)
                      |.+ +++||.|+|+ |.+|..++..|+..|  .+|.+++++++..... ..+.. .+.....+.+...       ..+++
T Consensus         1 m~~~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~-------~~~al   72 (316)
T 1ldn_A            1 MKNNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHG-------DYDDC   72 (316)
T ss_dssp             CTTTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-------CGGGT
T ss_pred             CCCCCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcC-------cHHHh
Confidence            655 4579999998 999999999998877  3899999876433321 11211 1111112333321       13568


Q ss_pred             CCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           76 RGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +++|+||-+++......... .++...|......+.+.+.+..+...++.+|-
T Consensus        73 ~~aDvViia~~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           73 RDADLVVICAGANQKPGETR-LDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             TTCSEEEECCSCCCCTTTCS-GGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCEEEEcCCCCCCCCCCH-HHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            89999999997644322222 35678888888889888887763345555543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.82  E-value=3.8e-05  Score=69.26  Aligned_cols=74  Identities=15%  Similarity=0.190  Sum_probs=61.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi   82 (338)
                      ..++|+|+| .|.+|+.+++.|.+.|++|++++++++....++.        .++.++.+|.++++.+.++ +.++|+||
T Consensus         3 ~~~~viIiG-~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~--------~g~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            3 HGMRVIIAG-FGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK--------FGMKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             -CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH--------TTCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh--------CCCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            356899998 5999999999999999999999999877665543        4678899999999988877 67899998


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      -+..
T Consensus        74 v~~~   77 (413)
T 3l9w_A           74 NAID   77 (413)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            7764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.82  E-value=0.00017  Score=62.30  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=68.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |||.|+|| |.+|..++..|+..|+  +|.+++++++..... ..+...........+..   .+    .++++++|+||
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~----~~a~~~aDvVI   72 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GG----HSELADAQVVI   72 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---EC----GGGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CC----HHHhCCCCEEE
Confidence            58999997 9999999999999998  999999976533321 11111100001222221   12    24678999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .+++......... .++...|+.....+++.+.+..+-..++.+|.
T Consensus        73 i~~~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN  117 (304)
T 2v6b_A           73 LTAGANQKPGESR-LDLLEKNADIFRELVPQITRAAPDAVLLVTSN  117 (304)
T ss_dssp             ECC-------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred             EcCCCCCCCCCcH-HHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            9997533222222 25678899988999888887653445665554

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.81  E-value=0.0002  Score=62.00  Aligned_cols=114  Identities=14%  Similarity=0.164  Sum_probs=76.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |||.|+|| |.+|..++..|+..+  .++..++++.++.+. ..++........++++.. +  +    .++++++|+||
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD~Vi   72 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGARAVV   72 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTEEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCCCEEE
Confidence            58999997 999999999999887  689999987544332 222222110002233332 1  1    45688999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .+++......... .++...|+.....+.+.+.+..+...++.+|.
T Consensus        73 i~ag~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           73 LAAGVAQRPGETR-LQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             ECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             ECCCCCCCCCcCH-HHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            9998644322222 36678899999999999888764566776654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.79  E-value=5.9e-05  Score=66.59  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=55.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----Cc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----GC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~   78 (338)
                      ..++|||+||+|-+|..+++.+...|.+|++++|+++..+..+.+        +.. ...|+.+.+++.+.+.     ++
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~--------g~~-~~~d~~~~~~~~~~~~~~~~~~~  239 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSI--------GGE-VFIDFTKEKDIVGAVLKATDGGA  239 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHT--------TCC-EEEETTTCSCHHHHHHHHHTSCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHc--------CCc-eEEecCccHhHHHHHHHHhCCCC
Confidence            357999999999999999999999999999999987766544432        111 1237765555555443     69


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||++++
T Consensus       240 D~vi~~~g  247 (347)
T 2hcy_A          240 HGVINVSV  247 (347)
T ss_dssp             EEEEECSS
T ss_pred             CEEEECCC
Confidence            99999987

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.77  E-value=0.00021  Score=61.85  Aligned_cols=115  Identities=11%  Similarity=0.070  Sum_probs=73.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHHHH-HhcC-CCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKVKH-LLEL-PKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |||.|+|+ |.+|..++..|...  |++|.+++++++..+.... +... ........+.     ...++.+ ++++|+|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~-----~t~d~~~-l~~aDvV   73 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT-----GSNDYAD-TANSDIV   73 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEE-----EESCGGG-GTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEE-----ECCCHHH-HCCCCEE
Confidence            58999997 99999999999885  7999999998876554321 1110 0000011111     1122333 7889999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |-+++........ ..++...|+.....+.+.+.+..+...++.+|.
T Consensus        74 iiav~~p~~~g~~-r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN  119 (310)
T 1guz_A           74 IITAGLPRKPGMT-REDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (310)
T ss_dssp             EECCSCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             EEeCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            9998743321111 235677888888899888877653456666644

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.76  E-value=0.00052  Score=59.88  Aligned_cols=114  Identities=13%  Similarity=0.087  Sum_probs=73.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHH-HHhc-CC--CCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVK-HLLE-LP--KASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~-~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      +++|.|+|| |.+|..++..|+..|+ +|.+++++++..+... .+.. ..  ....++..       ..++ ++++++|
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-------t~d~-~al~~aD   84 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-------ENNY-EYLQNSD   84 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-------ESCG-GGGTTCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-------CCCH-HHHCCCC
Confidence            468999997 9999999999999998 9999999876554321 1110 00  00012221       1234 5688999


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +||-+++.......... ++...|+.....+.+.+.+..+...++.+|.
T Consensus        85 ~VI~avg~p~k~g~tr~-dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           85 VVIITAGVPRKPNMTRS-DLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             EEEECCSCCCCTTCCSG-GGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEEEcCCCCCCCCCchh-hHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99999875432222222 4567788888888888877653445665554

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.75  E-value=0.00039  Score=60.32  Aligned_cols=114  Identities=13%  Similarity=0.060  Sum_probs=76.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHH----HHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKV----KHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      ..+||.|+|+ |.+|+.++..|+..|.  +|.+++++.+..+..    .+..... ...++. ...|      +. .+++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~-~~~~i~-~t~d------~~-~~~d   89 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL-HTAKIV-SGKD------YS-VSAG   89 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGS-CCSEEE-EESS------SC-SCSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcc-cCCeEE-EcCC------HH-HhCC
Confidence            4589999998 9999999999999885  899998866543321    1111111 011221 1122      22 3778


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +|+||-+||.......+. .+.+..|+.....+.+.+.+..+-..++.+|.
T Consensus        90 aDiVIitaG~p~kpG~tR-~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           90 SKLVVITAGARQQEGESR-LNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CSEEEECCSCCCCSSCCT-TGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCEEEEeCCCCCCCCCCH-HHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            999999998654333333 36789999999999999988764566776664

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.72  E-value=2.7e-05  Score=69.34  Aligned_cols=74  Identities=14%  Similarity=0.118  Sum_probs=56.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .++|+|+|+ |.+|..+++.|...|.+|++++|+++..+.......     ..   +.+|..+.+++.+++.++|+||++
T Consensus       166 ~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g-----~~---~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          166 PASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFG-----GR---VITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT-----TS---EEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC-----ce---EEEecCCHHHHHHHHhCCCEEEEC
Confidence            589999998 999999999999999999999998765544433211     11   345666666777888899999999


Q ss_pred             ccc
Q 040253           85 ATP   87 (338)
Q Consensus        85 a~~   87 (338)
                      ++.
T Consensus       237 ~g~  239 (369)
T 2eez_A          237 VLV  239 (369)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.71  E-value=4.7e-05  Score=66.78  Aligned_cols=74  Identities=19%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-----CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-----RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   78 (338)
                      .+++|+|+||+|-||..+++.+...|.+|++++|+++..+..+.+        +.. ...|..+.+++.+.+     .++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~--------g~~-~~~d~~~~~~~~~~~~~~~~~~~  215 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI--------GFD-AAFNYKTVNSLEEALKKASPDGY  215 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--------TCS-EEEETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhc--------CCc-EEEecCCHHHHHHHHHHHhCCCC
Confidence            368999999999999999999999999999999876555444322        111 224666644444433     269


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||+++|
T Consensus       216 d~vi~~~g  223 (333)
T 1v3u_A          216 DCYFDNVG  223 (333)
T ss_dssp             EEEEESSC
T ss_pred             eEEEECCC
Confidence            99999998

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.69  E-value=0.00045  Score=60.41  Aligned_cols=173  Identities=13%  Similarity=0.077  Sum_probs=103.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-------eEEEEEcCCCcHHHHH----HHhcCCCCCCcEEEEecccCCCCCchh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-------AVRATVRDPDNKKKVK----HLLELPKASTHLTLWKADLAEEGNFDE   73 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~d~~~~~~   73 (338)
                      .-||.|+||+|.||++++-.|.....       ++..++..+.. ..++    ++...... .....+..     .+..+
T Consensus        24 ~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~-~~~~Gva~DL~~~~~~-~~~~~~~~-----~~~~~   96 (345)
T 4h7p_A           24 AVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPAL-KALAGVEAELEDCAFP-LLDKVVVT-----ADPRV   96 (345)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH-HHHHHHHHHHHHTTCT-TEEEEEEE-----SCHHH
T ss_pred             CCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCcc-ccchhhhhhhhhcCcc-CCCcEEEc-----CChHH
Confidence            35999999999999999998887532       57777664321 1111    11111100 11122221     23457


Q ss_pred             hhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCce---eeeccCCCCCCcCCCCCCc
Q 040253           74 PIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAG---TLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        74 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~---v~~~~~~~~~~~~e~~~~~  149 (338)
                      +++++|+||-+||.......+. .++++.|+...+.+.+.+.+.. +-.+++.+|...   +|-       ......   
T Consensus        97 a~~~advVvi~aG~prkpGmtR-~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i-------~~~~~~---  165 (345)
T 4h7p_A           97 AFDGVAIAIMCGAFPRKAGMER-KDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALI-------LLKSAQ---  165 (345)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH-------HHHHTT---
T ss_pred             HhCCCCEEEECCCCCCCCCCCH-HHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHH-------HHHHcc---
Confidence            7899999999999765444444 4789999999999999987753 234566666531   110       000000   


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTS  200 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~  200 (338)
                           ...+++..-+.+.+..-++-..++++.|+....++-..|.|..-..
T Consensus       166 -----g~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~t  211 (345)
T 4h7p_A          166 -----GKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSST  211 (345)
T ss_dssp             -----TCSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSSTT
T ss_pred             -----CCCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCCe
Confidence                 0112344455566666677777777778876666666667765443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.64  E-value=3.7e-05  Score=70.39  Aligned_cols=74  Identities=14%  Similarity=0.215  Sum_probs=61.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi   82 (338)
                      +.|+|+|.| .|-+|+++++.|.+.|++|++++++++....+...       -++..+.||-++++.+.++ ++++|++|
T Consensus         2 ~~M~iiI~G-~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~-------~~~~~i~Gd~~~~~~L~~Agi~~ad~~i   73 (461)
T 4g65_A            2 NAMKIIILG-AGQVGGTLAENLVGENNDITIVDKDGDRLRELQDK-------YDLRVVNGHASHPDVLHEAGAQDADMLV   73 (461)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHH-------SSCEEEESCTTCHHHHHHHTTTTCSEEE
T ss_pred             CcCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHh-------cCcEEEEEcCCCHHHHHhcCCCcCCEEE
Confidence            468999998 69999999999999999999999987766655432       2578999999999988876 56899988


Q ss_pred             Eec
Q 040253           83 HLA   85 (338)
Q Consensus        83 ~~a   85 (338)
                      -+.
T Consensus        74 a~t   76 (461)
T 4g65_A           74 AVT   76 (461)
T ss_dssp             ECC
T ss_pred             EEc
Confidence            543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.62  E-value=7.5e-05  Score=68.13  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=53.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEE-E-----ecccCCCCCchhhhCCc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL-W-----KADLAEEGNFDEPIRGC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~-----~~Dl~d~~~~~~~~~~~   78 (338)
                      +|+|.|+| +|++|..++..|.+.|++|++++|+++..+.+..- ..+...+++.- +     .+.+.-..++.++++++
T Consensus         2 ~mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g-~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            2 SLDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSG-TIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-CSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcC-CCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence            37999998 79999999999999999999999987766555431 11111111100 0     11122234556677889


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+||-+...
T Consensus        80 DvViiaVpt   88 (450)
T 3gg2_A           80 DIIFIAVGT   88 (450)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEEcCC
Confidence            999988764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.61  E-value=5.3e-05  Score=65.47  Aligned_cols=82  Identities=13%  Similarity=0.125  Sum_probs=54.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++++|+|+ |-+|+.++..|.+.|. +|++++|+.+..++.+.+...-....++.....++.+.+++.+.+.++|+||
T Consensus       153 ~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiII  231 (315)
T 3tnl_A          153 IGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFT  231 (315)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEE
T ss_pred             cCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEE
Confidence            4689999996 8899999999999997 8999999843223322221100000112233345555555667778999999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      ++..
T Consensus       232 NaTp  235 (315)
T 3tnl_A          232 NATG  235 (315)
T ss_dssp             ECSS
T ss_pred             ECcc
Confidence            9875

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.61  E-value=0.00045  Score=59.82  Aligned_cols=115  Identities=14%  Similarity=0.123  Sum_probs=71.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHH-Hh-cCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKH-LL-ELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ||+|.|+| +|.+|..++..|...|  ++|.+++|+++....... +. ........+.....      ++ +.++++|+
T Consensus         1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------d~-~~~~~aDv   72 (309)
T 1hyh_A            1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN------DW-AALADADV   72 (309)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEES------CG-GGGTTCSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeC------CH-HHhCCCCE
Confidence            36999999 8999999999999998  799999998655444321 11 00000012222222      23 45778999


Q ss_pred             EEEecccCCC----CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           81 VFHLATPMDF----ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||-+++....    ..... .++...|+.....+++.+.+..+...++.+|.
T Consensus        73 Viiav~~~~~~~~~~g~~r-~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tN  123 (309)
T 1hyh_A           73 VISTLGNIKLQQDNPTGDR-FAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (309)
T ss_dssp             EEECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEEecCCcccCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence            9998874221    11111 24677888888888888877653345555443

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.61  E-value=0.00018  Score=62.55  Aligned_cols=118  Identities=13%  Similarity=0.081  Sum_probs=74.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHH-HHhcC-C--CCCCcEEEEecccCCCCCchhhh
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVK-HLLEL-P--KASTHLTLWKADLAEEGNFDEPI   75 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~~-~--~~~~~~~~~~~Dl~d~~~~~~~~   75 (338)
                      |.. +++|.|+|+ |.+|+.++..|+..|+ +|.+++++++..+... .+... .  ....++..       ..++ +++
T Consensus         1 M~~-~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-------t~d~-~a~   70 (317)
T 2ewd_A            1 MIE-RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-------TDDY-ADI   70 (317)
T ss_dssp             CCC-CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-------ESCG-GGG
T ss_pred             CCC-CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-------CCCH-HHh
Confidence            443 578999997 9999999999999998 9999999876554421 11000 0  00011211       1223 567


Q ss_pred             CCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           76 RGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +++|+||-+++......... .+....|......+++.+.+..+-..++.+|..
T Consensus        71 ~~aDiVi~avg~p~~~g~~r-~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp  123 (317)
T 2ewd_A           71 SGSDVVIITASIPGRPKDDR-SELLFGNARILDSVAEGVKKYCPNAFVICITNP  123 (317)
T ss_dssp             TTCSEEEECCCCSSCCSSCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             CCCCEEEEeCCCCCCCCCcH-HHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence            88999999997544222222 245566777777888877766534456666653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.58  E-value=6.7e-05  Score=65.63  Aligned_cols=74  Identities=14%  Similarity=0.026  Sum_probs=53.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh---h--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP---I--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~--~~~   78 (338)
                      ..++|+|+||+|.+|..+++.+...|.+|++++|++++.+....+.        .. ...|..+.+...++   .  .++
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g--------~~-~~~~~~~~~~~~~~~~~~~~~~~  210 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG--------AW-QVINYREEDLVERLKEITGGKKV  210 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC--------CC-EEEECCCccHHHHHHHHhCCCCc
Confidence            3689999999999999999999999999999999866555444321        11 12355554433332   2  269


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||+++|
T Consensus       211 D~vi~~~g  218 (327)
T 1qor_A          211 RVVYDSVG  218 (327)
T ss_dssp             EEEEECSC
T ss_pred             eEEEECCc
Confidence            99999998

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.58  E-value=0.001  Score=58.56  Aligned_cols=172  Identities=9%  Similarity=0.045  Sum_probs=98.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-----eEEEEEcCCCc-HHHH----HHHhcCCCCCCcEEEEecccCCCCCchhh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-----AVRATVRDPDN-KKKV----KHLLELPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-----~V~~~~r~~~~-~~~~----~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      ++||.|+||+|.||++++-.|+..+.     .+.....+.+. .+.+    -++....  .+-...+..  .  ....+.
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~--~p~~~~v~i--~--~~~y~~  105 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL--YPLLREVSI--G--IDPYEV  105 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT--CTTEEEEEE--E--SCHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhh--hhhcCCcEE--e--cCCHHH
Confidence            57899999999999999999988752     26665554332 1111    1111110  011111111  1  123567


Q ss_pred             hCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCce---eeeccCCCCCCcCCCCCCch
Q 040253           75 IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAG---TLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        75 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~---v~~~~~~~~~~~~e~~~~~~  150 (338)
                      ++++|+||-+||.......+. .++++.|+...+.+.+.+.+. ++-..++.+|...   +|-.       .....    
T Consensus       106 ~~daDvVVitag~prkpG~tR-~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia-------~k~sg----  173 (375)
T 7mdh_A          106 FEDVDWALLIGAKPRGPGMER-AALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC-------LKNAP----  173 (375)
T ss_dssp             TTTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH-------HHTCT----
T ss_pred             hCCCCEEEEcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH-------HHHcC----
Confidence            889999999988644333333 378999999999999998874 4345677777531   1100       00000    


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLT  199 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~  199 (338)
                           ..+++..-+.+.+..-++-..++++.|+....++--.|.|....
T Consensus       174 -----~~~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd  217 (375)
T 7mdh_A          174 -----DIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST  217 (375)
T ss_dssp             -----TSCGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST
T ss_pred             -----CCCccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCC
Confidence                 01122233344555556666667777876555554467786543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.56  E-value=0.0001  Score=64.94  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=53.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-----CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-----RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   78 (338)
                      ..++|||+||+|-+|..+++.+...|.+|++++|++++.+....  .+     +.. ...|..+.+++.+.+     .++
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~--~~-----g~~-~~~d~~~~~~~~~~~~~~~~~~~  226 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKT--KF-----GFD-DAFNYKEESDLTAALKRCFPNGI  226 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--TS-----CCS-EEEETTSCSCSHHHHHHHCTTCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--Hc-----CCc-eEEecCCHHHHHHHHHHHhCCCC
Confidence            35799999999999999999999999999999987655444431  11     111 123666554554433     269


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||++++
T Consensus       227 d~vi~~~g  234 (345)
T 2j3h_A          227 DIYFENVG  234 (345)
T ss_dssp             EEEEESSC
T ss_pred             cEEEECCC
Confidence            99999987

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.56  E-value=8.4e-05  Score=65.29  Aligned_cols=97  Identities=14%  Similarity=0.095  Sum_probs=58.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEE-EecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTL-WKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ++||.|.||+|++|+.+++.|.+.+. +++.+.+..+...++....      +.+.- ....+.+.+   + +.++|+||
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~------~~~~g~~~~~~~~~~---~-~~~vDvV~   73 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVH------PNLRGRTNLKFVPPE---K-LEPADILV   73 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTC------GGGTTTCCCBCBCGG---G-CCCCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhC------chhcCcccccccchh---H-hcCCCEEE
Confidence            57999999999999999999987764 7777766433322221110      11000 011122222   2 46899999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      .+.+...                 +..++..+.+.|  .++|-+|+..
T Consensus        74 ~a~g~~~-----------------s~~~a~~~~~aG--~~VId~Sa~~  102 (345)
T 2ozp_A           74 LALPHGV-----------------FAREFDRYSALA--PVLVDLSADF  102 (345)
T ss_dssp             ECCCTTH-----------------HHHTHHHHHTTC--SEEEECSSTT
T ss_pred             EcCCcHH-----------------HHHHHHHHHHCC--CEEEEcCccc
Confidence            8876310                 344555666677  4688888853

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.56  E-value=0.00012  Score=64.57  Aligned_cols=97  Identities=16%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC---chhhh--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN---FDEPI--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~--~~~   78 (338)
                      ..++|||+||+|-+|..+++.+...|.+|++++|++++.+..+.+.        ... ..|..+.+.   +.++.  .++
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g--------a~~-~~d~~~~~~~~~~~~~~~~~~~  236 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALG--------ADE-TVNYTHPDWPKEVRRLTGGKGA  236 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT--------CSE-EEETTSTTHHHHHHHHTTTTCE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcC--------CCE-EEcCCcccHHHHHHHHhCCCCc
Confidence            3579999999999999999999999999999999876655554331        111 135554432   22222  269


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      |+||++++. .     .           ....++.++..|   +++.+++.
T Consensus       237 d~vi~~~g~-~-----~-----------~~~~~~~l~~~G---~~v~~g~~  267 (343)
T 2eih_A          237 DKVVDHTGA-L-----Y-----------FEGVIKATANGG---RIAIAGAS  267 (343)
T ss_dssp             EEEEESSCS-S-----S-----------HHHHHHHEEEEE---EEEESSCC
T ss_pred             eEEEECCCH-H-----H-----------HHHHHHhhccCC---EEEEEecC
Confidence            999999982 1     0           234555555544   78887763

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.55  E-value=9.7e-05  Score=65.25  Aligned_cols=98  Identities=15%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ++|.|.||+|++|+.+++.|.+.+ .++..+.+..+...++......-   .+..  ..|+.-.+  .+.+.++|+||.+
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~---~~~v--~~dl~~~~--~~~~~~vDvVf~a   89 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHL---RAQK--LPTLVSVK--DADFSTVDAVFCC   89 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGG---TTSC--CCCCBCGG--GCCGGGCSEEEEC
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchh---cCcc--cccceecc--hhHhcCCCEEEEc
Confidence            689999999999999999999876 47777766443333333221100   0000  12332211  3345689999988


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      .+...                 +...+..+ +.|  .++|-.|+..
T Consensus        90 tp~~~-----------------s~~~a~~~-~aG--~~VId~sa~~  115 (359)
T 1xyg_A           90 LPHGT-----------------TQEIIKEL-PTA--LKIVDLSADF  115 (359)
T ss_dssp             CCTTT-----------------HHHHHHTS-CTT--CEEEECSSTT
T ss_pred             CCchh-----------------HHHHHHHH-hCC--CEEEECCccc
Confidence            76311                 24455556 666  4688888753

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.55  E-value=3.9e-05  Score=58.48  Aligned_cols=70  Identities=13%  Similarity=0.205  Sum_probs=52.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .++|+|+| +|.+|+.+++.|.+.|++|.+.+|+++....+....       ++     +....+++.+++.++|+||.+
T Consensus        21 ~~~v~iiG-~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~-------~~-----~~~~~~~~~~~~~~~Divi~a   87 (144)
T 3oj0_A           21 GNKILLVG-NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY-------EY-----EYVLINDIDSLIKNNDVIITA   87 (144)
T ss_dssp             CCEEEEEC-CSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH-------TC-----EEEECSCHHHHHHTCSEEEEC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh-------CC-----ceEeecCHHHHhcCCCEEEEe
Confidence            57999999 499999999999999988999999877655543321       11     222345566778899999998


Q ss_pred             ccc
Q 040253           85 ATP   87 (338)
Q Consensus        85 a~~   87 (338)
                      .+.
T Consensus        88 t~~   90 (144)
T 3oj0_A           88 TSS   90 (144)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            764

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.54  E-value=9.1e-05  Score=65.04  Aligned_cols=70  Identities=14%  Similarity=0.100  Sum_probs=59.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      ++|+|+|+ |.+|+.+++.|.+.|+ |.+++++++..+ ++.        .++.++.+|.+|++.+.++ ++++|.|+-+
T Consensus       116 ~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~  184 (336)
T 1lnq_A          116 RHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVD  184 (336)
T ss_dssp             CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHTCSTTEEEEEEC
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhcChhhccEEEEc
Confidence            47999995 9999999999999999 999988877655 433        4689999999999998877 7889999876


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      .+
T Consensus       185 ~~  186 (336)
T 1lnq_A          185 LE  186 (336)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.54  E-value=9e-05  Score=64.98  Aligned_cols=75  Identities=15%  Similarity=0.162  Sum_probs=53.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh---hh--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE---PI--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~--~~~   78 (338)
                      .+++|+|+||+|.+|..+++.+...|.+|++++|+++..+..+.+.        .. ...|..+.+....   ..  .++
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g--------~~-~~~d~~~~~~~~~i~~~~~~~~~  215 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLG--------CH-HTINYSTQDFAEVVREITGGKGV  215 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CC-EEEECCCHHHHHHHHHHhCCCCC
Confidence            3579999999999999999999999999999999865555444321        11 1235555433222   22  269


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+||+++|.
T Consensus       216 d~vi~~~g~  224 (333)
T 1wly_A          216 DVVYDSIGK  224 (333)
T ss_dssp             EEEEECSCT
T ss_pred             eEEEECCcH
Confidence            999999983

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.53  E-value=6.7e-05  Score=66.27  Aligned_cols=83  Identities=16%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |++++|+|.|+| +|.+|..++..|.+.|++|.+.+|+++..+.+......+...+++.. ...+.-..++.++++++|+
T Consensus        25 m~~~~mkI~VIG-aG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l-~~~i~~t~d~~ea~~~aDv  102 (356)
T 3k96_A           25 MEPFKHPIAILG-AGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPF-PETLKAYCDLKASLEGVTD  102 (356)
T ss_dssp             --CCCSCEEEEC-CSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCC-CTTEEEESCHHHHHTTCCE
T ss_pred             ccccCCeEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCcc-CCCeEEECCHHHHHhcCCE
Confidence            445568999998 69999999999999999999999987665555443221111122211 1111112345667888999


Q ss_pred             EEEec
Q 040253           81 VFHLA   85 (338)
Q Consensus        81 vi~~a   85 (338)
                      ||-+.
T Consensus       103 VilaV  107 (356)
T 3k96_A          103 ILIVV  107 (356)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            98664

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.52  E-value=0.00094  Score=58.02  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=70.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHH--HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKK--KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      ++|+|.|+|+ |.+|..++..|...|+  +|.+++|+++...  ..+.....+.. ....+...  .+    .+.++++|
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~----~~~~~~aD   77 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY-PTVSIDGS--DD----PEICRDAD   77 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGS-TTCEEEEE--SC----GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhc-CCeEEEeC--CC----HHHhCCCC
Confidence            4579999997 9999999999999998  9999999764433  11111111100 11122111  11    23567899


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +||-+++.......+ ..++...|......+++.+....+...++.++
T Consensus        78 ~Vii~v~~~~~~g~~-r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~  124 (319)
T 1lld_A           78 MVVITAGPRQKPGQS-RLELVGATVNILKAIMPNLVKVAPNAIYMLIT  124 (319)
T ss_dssp             EEEECCCCCCCTTCC-HHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EEEECCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            999998744322222 23567778887888888777654234455443

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.51  E-value=0.00025  Score=62.12  Aligned_cols=94  Identities=19%  Similarity=0.203  Sum_probs=55.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC---eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY---AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +++|+|.||+|++|+.+++.|.++++   ++..+.........+    ..    .+......|+ +++.    +.++|+|
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~----~~----~g~~i~~~~~-~~~~----~~~~DvV   72 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM----GF----AESSLRVGDV-DSFD----FSSVGLA   72 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE----EE----TTEEEECEEG-GGCC----GGGCSEE
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCcc----cc----CCcceEEecC-CHHH----hcCCCEE
Confidence            47899999999999999999997653   455554221110000    00    1111111122 2222    4589999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      |.+.+.          .       .+..++..+.+.| + ++|.+|+..
T Consensus        73 ~~a~g~----------~-------~s~~~a~~~~~aG-~-kvId~Sa~~  102 (340)
T 2hjs_A           73 FFAAAA----------E-------VSRAHAERARAAG-C-SVIDLSGAL  102 (340)
T ss_dssp             EECSCH----------H-------HHHHHHHHHHHTT-C-EEEETTCTT
T ss_pred             EEcCCc----------H-------HHHHHHHHHHHCC-C-EEEEeCCCC
Confidence            988762          1       1345666777777 4 478888764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.50  E-value=0.00068  Score=58.93  Aligned_cols=113  Identities=14%  Similarity=0.181  Sum_probs=72.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHH-Hh-cCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKH-LL-ELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |+|.|+|+ |.+|+.++..|+..|+  +|.+++++++....... +. ..+.. ....+..   +|    .+.++++|+|
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~-~~~~i~~---~d----~~~~~~aDvV   71 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFT-RRANIYA---GD----YADLKGSDVV   71 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEEE---CC----GGGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhc-CCcEEEe---CC----HHHhCCCCEE
Confidence            58999997 9999999999999998  99999998654443321 11 00000 1112211   12    2456789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |-+++......... .++...|+.....+++.+.+..+-..+|.+|.
T Consensus        72 iiav~~~~~~g~~r-~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN  117 (319)
T 1a5z_A           72 IVAAGVPQKPGETR-LQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (319)
T ss_dssp             EECCCCCCCSSCCH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEccCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            99887544221122 35677788888888888877553345665544

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.50  E-value=0.00017  Score=61.28  Aligned_cols=73  Identities=14%  Similarity=0.170  Sum_probs=50.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++++|+|+ |.+|+.++..|.+.|.+|++.+|+.++...+.......   ..+     +..+.+++.+  .++|+||+
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~---~~~-----~~~~~~~~~~--~~~DivVn  186 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT---GSI-----QALSMDELEG--HEFDLIIN  186 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG---SSE-----EECCSGGGTT--CCCSEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc---CCe-----eEecHHHhcc--CCCCEEEE
Confidence            4689999998 67999999999999999999999876655544322110   112     1222222322  57999999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +++.
T Consensus       187 ~t~~  190 (271)
T 1nyt_A          187 ATSS  190 (271)
T ss_dssp             CCSC
T ss_pred             CCCC
Confidence            9975

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.49  E-value=0.00016  Score=62.76  Aligned_cols=74  Identities=18%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEE--------ecccCCCCCchhhh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLW--------KADLAEEGNFDEPI   75 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--------~~Dl~d~~~~~~~~   75 (338)
                      +||+|.|+| .|.+|+.++..|.+.|++|++++|+++..+.+...        ++...        ..+..+.+++.+.+
T Consensus         2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (316)
T 2ew2_A            2 NAMKIAIAG-AGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN--------GLIADFNGEEVVANLPIFSPEEIDHQN   72 (316)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH--------CEEEEETTEEEEECCCEECGGGCCTTS
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC--------CEEEEeCCCeeEecceeecchhhcccC
Confidence            357999998 59999999999999999999999987655544331        12221        12222333333445


Q ss_pred             CCccEEEEecc
Q 040253           76 RGCTGVFHLAT   86 (338)
Q Consensus        76 ~~~d~vi~~a~   86 (338)
                      +++|+||-+..
T Consensus        73 ~~~d~vi~~v~   83 (316)
T 2ew2_A           73 EQVDLIIALTK   83 (316)
T ss_dssp             CCCSEEEECSC
T ss_pred             CCCCEEEEEec
Confidence            58999987764

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.48  E-value=0.00012  Score=64.77  Aligned_cols=75  Identities=11%  Similarity=-0.011  Sum_probs=53.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh---hh--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE---PI--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~--~~~   78 (338)
                      .+++|+|+||+|-+|..+++.+...|.+|++++|++++.+..+.+.        .. ...|..+.+...+   ..  .++
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g--------~~-~~~~~~~~~~~~~~~~~~~~~~~  232 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLG--------AA-AGFNYKKEDFSEATLKFTKGAGV  232 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC--------Cc-EEEecCChHHHHHHHHHhcCCCc
Confidence            3579999999999999999999999999999999876655544331        11 1235555433222   22  269


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+||+++|.
T Consensus       233 d~vi~~~G~  241 (354)
T 2j8z_A          233 NLILDCIGG  241 (354)
T ss_dssp             EEEEESSCG
T ss_pred             eEEEECCCc
Confidence            999999983

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.48  E-value=0.00012  Score=64.81  Aligned_cols=74  Identities=20%  Similarity=0.147  Sum_probs=52.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh---hhC--Cc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE---PIR--GC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~~--~~   78 (338)
                      ..++|+|+||+|-+|..+++.+...|.+|++++|++++.+..+.+        +.. ...|..+.+...+   ...  ++
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~--------ga~-~~~d~~~~~~~~~~~~~~~~~~~  240 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN--------GAH-EVFNHREVNYIDKIKKYVGEKGI  240 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--------TCS-EEEETTSTTHHHHHHHHHCTTCE
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHc--------CCC-EEEeCCCchHHHHHHHHcCCCCc
Confidence            357999999999999999999999999999999986655543332        111 1235555432222   222  69


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||+++|
T Consensus       241 D~vi~~~G  248 (351)
T 1yb5_A          241 DIIIEMLA  248 (351)
T ss_dssp             EEEEESCH
T ss_pred             EEEEECCC
Confidence            99999998

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.46  E-value=0.00012  Score=59.90  Aligned_cols=66  Identities=21%  Similarity=0.282  Sum_probs=47.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ++|+|.|+| +|.+|+.+++.|.+.|++|.+.+|+++....+   ..     .++...        ++.++++++|+||.
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~---~~-----~g~~~~--------~~~~~~~~~DvVi~   89 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTARL---FP-----SAAQVT--------FQEEAVSSPEVIFV   89 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHHH---SB-----TTSEEE--------EHHHHTTSCSEEEE
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HH-----cCCcee--------cHHHHHhCCCEEEE
Confidence            357899998 89999999999999999999999976543332   11     122221        34566778999998


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        90 av~   92 (215)
T 2vns_A           90 AVF   92 (215)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            765

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.46  E-value=0.00076  Score=58.76  Aligned_cols=102  Identities=21%  Similarity=0.145  Sum_probs=59.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCC---CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDP---DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |++|.|.||||++|..+++.|.+. +.++..+..+.   .....+..............+...  .   +..++..++|+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~---~~~~~~~~~Dv   78 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--S---DISEFSPGVDV   78 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--S---SGGGTCTTCSE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEecc--C---CHHHHhcCCCE
Confidence            689999999999999999999885 46777776544   333333322110000001111111  0   12233368999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      ||.+.+.          .       .+..++..+.+.|  .++|-.|+..
T Consensus        79 vf~a~p~----------~-------~s~~~~~~~~~~g--~~vIDlSa~f  109 (337)
T 3dr3_A           79 VFLATAH----------E-------VSHDLAPQFLEAG--CVVFDLSGAF  109 (337)
T ss_dssp             EEECSCH----------H-------HHHHHHHHHHHTT--CEEEECSSTT
T ss_pred             EEECCCh----------H-------HHHHHHHHHHHCC--CEEEEcCCcc
Confidence            9977652          1       0345555566667  4688888864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.42  E-value=0.00011  Score=60.45  Aligned_cols=68  Identities=18%  Similarity=0.134  Sum_probs=48.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEE-EEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRA-TVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      +||+|.|+| +|.+|..+++.|.+.|++|.+ .+|+++..+.+.....       +..       ..+..+.++++|+||
T Consensus        22 ~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g-------~~~-------~~~~~~~~~~aDvVi   86 (220)
T 4huj_A           22 SMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG-------ASV-------KAVELKDALQADVVI   86 (220)
T ss_dssp             GSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT-------TTE-------EECCHHHHTTSSEEE
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC-------CCc-------ccChHHHHhcCCEEE
Confidence            468999999 999999999999999999998 7888776655433211       111       112234567899998


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      -+..
T Consensus        87 lavp   90 (220)
T 4huj_A           87 LAVP   90 (220)
T ss_dssp             EESC
T ss_pred             EeCC
Confidence            7753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.38  E-value=0.00016  Score=63.43  Aligned_cols=74  Identities=20%  Similarity=0.176  Sum_probs=52.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhh----CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPI----RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----~~~   78 (338)
                      .+++|||+||+|-+|..+++.+...|.+|++++|++++.+.. +.+        ++. ...|..+.+....+.    .++
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~--------g~~-~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL--------GFD-GAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------CCS-EEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--------CCC-EEEECCCHHHHHHHHHhcCCCc
Confidence            468999999999999999999999999999999887665544 322        111 123554443222221    269


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||++++
T Consensus       220 d~vi~~~g  227 (336)
T 4b7c_A          220 DVFFDNVG  227 (336)
T ss_dssp             EEEEESSC
T ss_pred             eEEEECCC
Confidence            99999987

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.38  E-value=0.00024  Score=61.40  Aligned_cols=68  Identities=13%  Similarity=0.016  Sum_probs=49.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ++|+|.|+| .|.+|..+++.|.+.|++|++.+|+++..+.+...        ++...      ..++.++++++|+||-
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~~------~~~~~e~~~~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE--------GACGA------AASAREFAGVVDALVI   70 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCSEE------ESSSTTTTTTCSEEEE
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc--------CCccc------cCCHHHHHhcCCEEEE
Confidence            467899997 89999999999999999999999987665554331        11111      2334556678899987


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        71 ~vp   73 (303)
T 3g0o_A           71 LVV   73 (303)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            764

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.35  E-value=0.00074  Score=59.53  Aligned_cols=94  Identities=14%  Similarity=0.166  Sum_probs=63.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh------CCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI------RGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~------~~~d   79 (338)
                      ++|+|+||+|-+|...++.+...|.+|+++++++++.+..+.+..      . ..  .|..+. ++.+.+      .++|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga------~-~~--~~~~~~-~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGA------A-HV--LNEKAP-DFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTC------S-EE--EETTST-THHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC------C-EE--EECCcH-HHHHHHHHHhcCCCCc
Confidence            689999999999999999999999999999998877766655421      1 12  233332 233322      2799


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +||++++.          ..       ....++.++..|   +++.+++.
T Consensus       236 ~vid~~g~----------~~-------~~~~~~~l~~~G---~iv~~G~~  265 (349)
T 3pi7_A          236 IFLDAVTG----------PL-------ASAIFNAMPKRA---RWIIYGRL  265 (349)
T ss_dssp             EEEESSCH----------HH-------HHHHHHHSCTTC---EEEECCCS
T ss_pred             EEEECCCC----------hh-------HHHHHhhhcCCC---EEEEEecc
Confidence            99999873          11       133455555444   78887753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.34  E-value=0.00051  Score=57.46  Aligned_cols=103  Identities=18%  Similarity=0.141  Sum_probs=64.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC-------------------CcHHHHHH-HhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP-------------------DNKKKVKH-LLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~   63 (338)
                      .++|+|.| .|-+|+++++.|...|. ++++++++.                   .+.+.... +..... .-.++.+..
T Consensus        31 ~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np-~~~v~~~~~  108 (249)
T 1jw9_B           31 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINP-HIAITPVNA  108 (249)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCT-TSEEEEECS
T ss_pred             CCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCC-CcEEEEEec
Confidence            46899998 68899999999999995 899999876                   33333322 211110 124555665


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ++++ +.+.+++.++|+||.+...        . +       .-..+.+++++.+ ++ +|+.+.
T Consensus       109 ~~~~-~~~~~~~~~~DvVi~~~d~--------~-~-------~~~~l~~~~~~~~-~p-~i~~~~  154 (249)
T 1jw9_B          109 LLDD-AELAALIAEHDLVLDCTDN--------V-A-------VRNQLNAGCFAAK-VP-LVSGAA  154 (249)
T ss_dssp             CCCH-HHHHHHHHTSSEEEECCSS--------H-H-------HHHHHHHHHHHHT-CC-EEEEEE
T ss_pred             cCCH-hHHHHHHhCCCEEEEeCCC--------H-H-------HHHHHHHHHHHcC-CC-EEEeee
Confidence            5543 3455677899999987531        1 1       1234566677766 43 555543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.33  E-value=0.00018  Score=63.65  Aligned_cols=72  Identities=18%  Similarity=0.117  Sum_probs=50.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh----C-Ccc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI----R-GCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----~-~~d   79 (338)
                      ++|||+||+|-||..+++.+...|. +|++++++++..+.....  +     ++. ...|..+.+ +.+.+    . ++|
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~--~-----g~~-~~~d~~~~~-~~~~~~~~~~~~~d  232 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE--L-----GFD-AAINYKKDN-VAEQLRESCPAGVD  232 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--S-----CCS-EEEETTTSC-HHHHHHHHCTTCEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH--c-----CCc-eEEecCchH-HHHHHHHhcCCCCC
Confidence            8999999999999999999999999 999999876554443321  1     111 123555533 22222    2 699


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +||+++|
T Consensus       233 ~vi~~~G  239 (357)
T 2zb4_A          233 VYFDNVG  239 (357)
T ss_dssp             EEEESCC
T ss_pred             EEEECCC
Confidence            9999998

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.33  E-value=0.0004  Score=61.62  Aligned_cols=97  Identities=16%  Similarity=0.112  Sum_probs=64.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-----CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-----RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   78 (338)
                      .+++|||+||+|.+|..+++.+...|.+|+++++++++.+..+.+.        +.. ..|..+. ++.+.+     .++
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~G--------a~~-~~~~~~~-~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLG--------CDR-PINYKTE-PVGTVLKQEYPEGV  232 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------CSE-EEETTTS-CHHHHHHHHCTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC--------CcE-EEecCCh-hHHHHHHHhcCCCC
Confidence            3579999999999999999999999999999998765555444321        111 1233332 233322     268


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      |+||++++.          .       .....++.++..|   +++.+++..
T Consensus       233 D~vid~~g~----------~-------~~~~~~~~l~~~G---~iv~~g~~~  264 (362)
T 2c0c_A          233 DVVYESVGG----------A-------MFDLAVDALATKG---RLIVIGFIS  264 (362)
T ss_dssp             EEEEECSCT----------H-------HHHHHHHHEEEEE---EEEECCCGG
T ss_pred             CEEEECCCH----------H-------HHHHHHHHHhcCC---EEEEEeCCC
Confidence            999999872          1       1234555555544   788887643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.32  E-value=0.00038  Score=63.32  Aligned_cols=80  Identities=15%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEE-E-----ecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL-W-----KADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~-----~~Dl~d~~~~~~~~~~~d   79 (338)
                      |+|.|+| +|++|..++..|++.|++|++++|+++..+.+..-. .+...++.+. +     .+.+....++.++++++|
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~-~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD   78 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCC-CCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence            4899998 899999999999999999999999876655443210 1100011000 0     111222334556677899


Q ss_pred             EEEEeccc
Q 040253           80 GVFHLATP   87 (338)
Q Consensus        80 ~vi~~a~~   87 (338)
                      +||-+...
T Consensus        79 vviiaVpt   86 (436)
T 1mv8_A           79 VSFICVGT   86 (436)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEcCC
Confidence            99988753

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.32  E-value=0.00045  Score=62.34  Aligned_cols=121  Identities=12%  Similarity=0.076  Sum_probs=67.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEE------EecccCCCCCchhhhCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL------WKADLAEEGNFDEPIRG   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~d~~~~~~~~~~   77 (338)
                      .|.+|.|+| .||+|..++..|.+.|++|++++.++++.+.+..-. .+...++++-      -.+.++-..+..+++..
T Consensus        20 ~m~~IaViG-lGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~-~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~   97 (444)
T 3vtf_A           20 HMASLSVLG-LGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGR-PHIYEPGLEEALGRALSSGRLSFAESAEEAVAA   97 (444)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHT
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhc
Confidence            467999997 999999999999999999999998876655543210 1111111100      01112222344566778


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +|++|-+.+........+.-.+.   ...+..+.+.++..++-.-+|+=||.
T Consensus        98 ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTV  146 (444)
T 3vtf_A           98 TDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTV  146 (444)
T ss_dssp             SSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCC
T ss_pred             CCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            89988777633221112211111   12234455555543312456666765

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.32  E-value=0.00026  Score=62.61  Aligned_cols=75  Identities=17%  Similarity=0.103  Sum_probs=53.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh----CCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI----RGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~----~~~d   79 (338)
                      ..++|+|+||+|-+|..+++.+...|.+|++++|++++.+..+.+..      . ..  .|..+.+....+.    .++|
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa------~-~~--~~~~~~~~~~~~~~~~~~g~D  237 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA------K-RG--INYRSEDFAAVIKAETGQGVD  237 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC------S-EE--EETTTSCHHHHHHHHHSSCEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------C-EE--EeCCchHHHHHHHHHhCCCce
Confidence            36799999999999999999999999999999998776665554321      1 11  2444433222222    2699


Q ss_pred             EEEEeccc
Q 040253           80 GVFHLATP   87 (338)
Q Consensus        80 ~vi~~a~~   87 (338)
                      +||++++.
T Consensus       238 vvid~~g~  245 (353)
T 4dup_A          238 IILDMIGA  245 (353)
T ss_dssp             EEEESCCG
T ss_pred             EEEECCCH
Confidence            99999983

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.32  E-value=0.00092  Score=58.87  Aligned_cols=94  Identities=21%  Similarity=0.188  Sum_probs=53.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC---eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY---AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +++|.|.||||++|..|++.|.++++   ++..+.-..+....+.    .  ......+...|   .    ..+.++|+|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~----~--~~~~~~~~~~~---~----~~~~~~Dvv   68 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLK----F--KDQDITIEETT---E----TAFEGVDIA   68 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEE----E--TTEEEEEEECC---T----TTTTTCSEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcce----e--cCCCceEeeCC---H----HHhcCCCEE
Confidence            57999999999999999999888755   3333332211111000    0  00011111111   1    235689999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      |.+.+.          .       .+..++..+.+.|  .++|-.|+..
T Consensus        69 f~a~~~----------~-------~s~~~a~~~~~~G--~~vIDlSa~~   98 (366)
T 3pwk_A           69 LFSAGS----------S-------TSAKYAPYAVKAG--VVVVDNTSYF   98 (366)
T ss_dssp             EECSCH----------H-------HHHHHHHHHHHTT--CEEEECSSTT
T ss_pred             EECCCh----------H-------hHHHHHHHHHHCC--CEEEEcCCcc
Confidence            988762          1       0345555566667  3688888864

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=97.30  E-value=0.0011  Score=57.12  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=73.9

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHH-HHHhcC-CCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKV-KHLLEL-PKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ||.|+|| |.+|..++..|+..|. +|..++++.+..+.. .++... ........+..     ..++ ++++++|+||-
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~-----t~d~-~a~~~aD~Vi~   73 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG-----SNSY-EDMRGSDIVLV   73 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-----ESCG-GGGTTCSEEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE-----CCCH-HHhCCCCEEEE
Confidence            5899997 9999999999988786 699999987654331 111110 00001111221     1223 56889999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .++......... .++...|+.....+++.+.+..+-.++|.+|.
T Consensus        74 ~ag~~~k~G~~r-~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           74 TAGIGRKPGMTR-EQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CCSCCCCSSCCT-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             eCCCCCCCCCcH-HHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            988644322222 36688899999999999887653456776664

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.29  E-value=0.00049  Score=60.58  Aligned_cols=101  Identities=8%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCC--CCC----cEEEEecccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPK--AST----HLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~--~~~----~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      +++|.|.||||++|..|++.|.+.. .++..+....+....+........  ..+    ...+...   +.    ..+.+
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~---~~----~~~~~   79 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPT---DP----KLMDD   79 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEEC---CG----GGCTT
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeC---CH----HHhcC
Confidence            5789999999999999999887764 366666544333333332211000  000    1111111   11    23468


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT  131 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v  131 (338)
                      +|+||.+.+...                 +..+...+.+.|  .++|-.|+..-
T Consensus        80 vDvvf~a~p~~~-----------------s~~~a~~~~~~G--~~vIDlSa~~R  114 (359)
T 4dpk_A           80 VDIIFSPLPQGA-----------------AGPVEEQFAKEG--FPVISNSPDHR  114 (359)
T ss_dssp             CCEEEECCCTTT-----------------HHHHHHHHHHTT--CEEEECSSTTT
T ss_pred             CCEEEECCChHH-----------------HHHHHHHHHHCC--CEEEEcCCCcc
Confidence            999998876311                 234555555667  46888888643

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.29  E-value=0.00049  Score=60.58  Aligned_cols=101  Identities=8%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCC--CCC----cEEEEecccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPK--AST----HLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~--~~~----~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      +++|.|.||||++|..|++.|.+.. .++..+....+....+........  ..+    ...+...   +.    ..+.+
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~---~~----~~~~~   79 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPT---DP----KLMDD   79 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEEC---CG----GGCTT
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeC---CH----HHhcC
Confidence            5789999999999999999887764 366666544333333332211000  000    1111111   11    23468


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCcee
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGT  131 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v  131 (338)
                      +|+||.+.+...                 +..+...+.+.|  .++|-.|+..-
T Consensus        80 vDvvf~a~p~~~-----------------s~~~a~~~~~~G--~~vIDlSa~~R  114 (359)
T 4dpl_A           80 VDIIFSPLPQGA-----------------AGPVEEQFAKEG--FPVISNSPDHR  114 (359)
T ss_dssp             CCEEEECCCTTT-----------------HHHHHHHHHHTT--CEEEECSSTTT
T ss_pred             CCEEEECCChHH-----------------HHHHHHHHHHCC--CEEEEcCCCcc
Confidence            999998876311                 234555555667  46888888643

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.29  E-value=0.0024  Score=54.88  Aligned_cols=111  Identities=12%  Similarity=0.126  Sum_probs=71.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ++||.|+|| |.+|..++..|+.+|.  +|..++++++......++....  .+++...       .++ +.++++|+||
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~--~~~i~~t-------~d~-~~l~~aD~Vi   82 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFN--LPNVEIS-------KDL-SASAHSKVVI   82 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHT--CTTEEEE-------SCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhc--CCCeEEe-------CCH-HHHCCCCEEE
Confidence            579999995 9999999999999987  8999998764221222222111  1234331       223 5688999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      -.++.. ..... -.++...|+.....+++.+.+..+-..++.+|.
T Consensus        83 ~aag~~-~pG~t-R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           83 FTVNSL-GSSQS-YLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             ECCCC-----CC-HHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             EcCCCC-CCCCC-HHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            999763 22222 235677888888889888887653456666665

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.29  E-value=0.00051  Score=60.37  Aligned_cols=73  Identities=26%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh----hhC--C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE----PIR--G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~----~~~--~   77 (338)
                      .+++|||+||+|-+|..+++.+...|.+|+++++++++.+..+.+..      . ..+  |..  +++.+    +..  +
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga------~-~v~--~~~--~~~~~~v~~~~~~~g  227 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA------D-IVL--PLE--EGWAKAVREATGGAG  227 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC------S-EEE--ESS--TTHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC------c-EEe--cCc--hhHHHHHHHHhCCCC
Confidence            36799999999999999999999999999999998877766655421      1 222  322  23332    222  6


Q ss_pred             ccEEEEeccc
Q 040253           78 CTGVFHLATP   87 (338)
Q Consensus        78 ~d~vi~~a~~   87 (338)
                      +|+||++++.
T Consensus       228 ~Dvvid~~g~  237 (342)
T 4eye_A          228 VDMVVDPIGG  237 (342)
T ss_dssp             EEEEEESCC-
T ss_pred             ceEEEECCch
Confidence            9999999983

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.26  E-value=0.00029  Score=61.51  Aligned_cols=75  Identities=20%  Similarity=0.203  Sum_probs=53.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh---hh--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE---PI--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~--~~~   78 (338)
                      .+++|||+||+|-+|..+++.+...|.+|+++++++++.+..+.+..      . ..  .|..+.+....   +.  .++
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga------~-~~--~~~~~~~~~~~~~~~~~~~g~  210 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA------W-ET--IDYSHEDVAKRVLELTDGKKC  210 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC------S-EE--EETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC------C-EE--EeCCCccHHHHHHHHhCCCCc
Confidence            36799999999999999999999999999999998766655544321      1 11  24444332222   22  269


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+||++++.
T Consensus       211 Dvvid~~g~  219 (325)
T 3jyn_A          211 PVVYDGVGQ  219 (325)
T ss_dssp             EEEEESSCG
T ss_pred             eEEEECCCh
Confidence            999999883

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.25  E-value=0.00051  Score=60.35  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=54.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCch---hhh--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFD---EPI--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~--~~~   78 (338)
                      .+++|+|+||+|-+|..+++.+...|.+|+++++++++.+..+.+..      . ..  .|..+.+...   ++.  .++
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga------~-~~--~~~~~~~~~~~~~~~~~~~g~  214 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA------A-YV--IDTSTAPLYETVMELTNGIGA  214 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC------S-EE--EETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC------c-EE--EeCCcccHHHHHHHHhCCCCC
Confidence            36799999999999999999998899999999999888776665421      1 11  2444433222   222  269


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+||++++.
T Consensus       215 Dvvid~~g~  223 (340)
T 3gms_A          215 DAAIDSIGG  223 (340)
T ss_dssp             EEEEESSCH
T ss_pred             cEEEECCCC
Confidence            999999983

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.25  E-value=0.00056  Score=58.80  Aligned_cols=67  Identities=22%  Similarity=0.253  Sum_probs=45.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      |.+||-++| .|.+|..+++.|++.||+|++.+|++++.+.+..        .++.       -.++..++++++|+||-
T Consensus         4 Ms~kIgfIG-LG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~--------~G~~-------~~~s~~e~~~~~dvvi~   67 (297)
T 4gbj_A            4 MSEKIAFLG-LGNLGTPIAEILLEAGYELVVWNRTASKAEPLTK--------LGAT-------VVENAIDAITPGGIVFS   67 (297)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHHTTCEEEEC-------CTTTT--------TTCE-------ECSSGGGGCCTTCEEEE
T ss_pred             CCCcEEEEe-cHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH--------cCCe-------EeCCHHHHHhcCCceee
Confidence            346899997 8999999999999999999999998776543321        1222       23456677888999997


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        68 ~l~   70 (297)
T 4gbj_A           68 VLA   70 (297)
T ss_dssp             CCS
T ss_pred             ecc
Confidence            764

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.24  E-value=0.00042  Score=59.64  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=33.6

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      +++++|.|+||.|.+|..+++.|.+.|++|.+++|++.
T Consensus        19 ~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           19 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            34578999999999999999999999999999988653

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.24  E-value=0.00034  Score=61.25  Aligned_cols=96  Identities=17%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCch---hhh--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFD---EPI--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~---~~~--~~~   78 (338)
                      .+++|||+||+|-+|..+++.+...|.+|+++++++++.+..+.+.        ... ..|..+.+...   +..  .++
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g--------a~~-~~~~~~~~~~~~~~~~~~~~g~  218 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYG--------AEY-LINASKEDILRQVLKFTNGKGV  218 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------CSE-EEETTTSCHHHHHHHHTTTSCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CcE-EEeCCCchHHHHHHHHhCCCCc
Confidence            3679999999999999999999999999999999766655444321        111 12443433222   222  269


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |+||++++.          ..       ....++.++..|   +++.++.
T Consensus       219 D~vid~~g~----------~~-------~~~~~~~l~~~G---~iv~~G~  248 (334)
T 3qwb_A          219 DASFDSVGK----------DT-------FEISLAALKRKG---VFVSFGN  248 (334)
T ss_dssp             EEEEECCGG----------GG-------HHHHHHHEEEEE---EEEECCC
T ss_pred             eEEEECCCh----------HH-------HHHHHHHhccCC---EEEEEcC
Confidence            999999983          11       234455555544   7887765

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.23  E-value=0.00054  Score=60.47  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=29.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRD   38 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   38 (338)
                      ++||.|.||+|++|+.+++.|.+.+ .+|.++.++
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s   42 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAAS   42 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEEC
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcc
Confidence            4699999999999999999998765 578888764

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.22  E-value=0.0047  Score=46.38  Aligned_cols=86  Identities=17%  Similarity=0.297  Sum_probs=56.6

Q ss_pred             CcEEEEeCCc---hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGAS---GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .++|.|.|+|   |.+|..+++.|++.|++|+.++++...                +    ..+.-..++.++.+.+|++
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----------------i----~G~~~~~s~~el~~~vDlv   73 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----------------I----EGLKCYRSVRELPKDVDVI   73 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----------------E----TTEECBSSGGGSCTTCCEE
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----------------E----CCeeecCCHHHhCCCCCEE
Confidence            5789999987   999999999999999987666544211                1    1223344555556678988


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +-+...         +.        ...+++.+.+.+ ++.++..++
T Consensus        74 ii~vp~---------~~--------v~~v~~~~~~~g-~~~i~~~~~  102 (138)
T 1y81_A           74 VFVVPP---------KV--------GLQVAKEAVEAG-FKKLWFQPG  102 (138)
T ss_dssp             EECSCH---------HH--------HHHHHHHHHHTT-CCEEEECTT
T ss_pred             EEEeCH---------HH--------HHHHHHHHHHcC-CCEEEEcCc
Confidence            866531         11        344555566677 666665553

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.22  E-value=0.00019  Score=63.68  Aligned_cols=74  Identities=11%  Similarity=0.153  Sum_probs=54.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .++|+|+|+ |-+|..+++.|...|.+|++++|++++.+.......     ..+..+.   .+.+++.+.+.++|+||++
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~DvVI~~  237 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELLY---SNSAEIETAVAEADLLIGA  237 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEEE---CCHHHHHHHHHTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhC-----ceeEeee---CCHHHHHHHHcCCCEEEEC
Confidence            479999998 999999999999999999999998776665554332     1121211   2234455667789999999


Q ss_pred             ccc
Q 040253           85 ATP   87 (338)
Q Consensus        85 a~~   87 (338)
                      ++.
T Consensus       238 ~~~  240 (361)
T 1pjc_A          238 VLV  240 (361)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.22  E-value=0.00073  Score=58.58  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=49.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh-hhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE-PIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~   80 (338)
                      +.|+|.|+| .|.+|..+++.|.+.|+  +|++.+|+++..+.....        ++.    |- -..++.+ +++++|+
T Consensus        32 ~~~kI~IIG-~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~--------G~~----~~-~~~~~~~~~~~~aDv   97 (314)
T 3ggo_A           32 SMQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL--------GII----DE-GTTSIAKVEDFSPDF   97 (314)
T ss_dssp             SCSEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT--------TSC----SE-EESCTTGGGGGCCSE
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC--------CCc----ch-hcCCHHHHhhccCCE
Confidence            458999998 89999999999999999  999999987655443321        110    00 0123445 6778999


Q ss_pred             EEEecc
Q 040253           81 VFHLAT   86 (338)
Q Consensus        81 vi~~a~   86 (338)
                      ||-+..
T Consensus        98 Vilavp  103 (314)
T 3ggo_A           98 VMLSSP  103 (314)
T ss_dssp             EEECSC
T ss_pred             EEEeCC
Confidence            997764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.19  E-value=0.00093  Score=59.30  Aligned_cols=70  Identities=14%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC---CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh---CCc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP---DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI---RGC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~   78 (338)
                      +++|||+|| |-+|..+++.+...|.+|+++++++   ++.+..+.+        ++..+  | .+ +...++.   .++
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~--------ga~~v--~-~~-~~~~~~~~~~~~~  247 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEET--------KTNYY--N-SS-NGYDKLKDSVGKF  247 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHH--------TCEEE--E-CT-TCSHHHHHHHCCE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHh--------CCcee--c-hH-HHHHHHHHhCCCC
Confidence            689999999 9999999999999999999999987   544433332        23444  5 44 2222221   479


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+||++++.
T Consensus       248 d~vid~~g~  256 (366)
T 2cdc_A          248 DVIIDATGA  256 (366)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.19  E-value=0.00077  Score=56.89  Aligned_cols=74  Identities=14%  Similarity=0.163  Sum_probs=46.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |+||.|+|++|.+|+.+++.+.+. +.++.++ +|+.+.... ++....    .++.   .++.-.+++.+++.++|+||
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G-~d~gel----~g~~---~gv~v~~dl~~ll~~~DVVI   78 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLG-QDAGAF----LGKQ---TGVALTDDIERVCAEADYLI   78 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTT-SBTTTT----TTCC---CSCBCBCCHHHHHHHCSEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCccccc-ccHHHH----hCCC---CCceecCCHHHHhcCCCEEE
Confidence            689999999999999999999876 5676664 554321100 000000    0000   02333456677777899999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      ++..
T Consensus        79 DfT~   82 (272)
T 4f3y_A           79 DFTL   82 (272)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            9864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.19  E-value=0.00039  Score=59.80  Aligned_cols=65  Identities=11%  Similarity=-0.003  Sum_probs=50.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|+|.|+| .|.+|..+++.|.+.|++|++.+|+++..+.+...        ++.       -..++.++++ +|+||-+
T Consensus        15 ~~~I~vIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~-------~~~~~~~~~~-aDvvi~~   77 (296)
T 3qha_A           15 QLKLGYIG-LGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA--------GAT-------LADSVADVAA-ADLIHIT   77 (296)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHT--------TCE-------ECSSHHHHTT-SSEEEEC
T ss_pred             CCeEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--------CCE-------EcCCHHHHHh-CCEEEEE
Confidence            46899997 89999999999999999999999998876655431        222       2345667777 9999977


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        78 vp   79 (296)
T 3qha_A           78 VL   79 (296)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.18  E-value=0.0012  Score=59.75  Aligned_cols=95  Identities=8%  Similarity=0.181  Sum_probs=63.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-C---eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC---CCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-Y---AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE---GNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~---~~~~~~~~~   77 (338)
                      .++|+|+| .|-||+.+++.|.++. .   +|++++......+..+..        ++.+...++++.   +.+.+++++
T Consensus        13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~--------g~~~~~~~Vdadnv~~~l~aLl~~   83 (480)
T 2ph5_A           13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQY--------GVSFKLQQITPQNYLEVIGSTLEE   83 (480)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHH--------TCEEEECCCCTTTHHHHTGGGCCT
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhc--------CCceeEEeccchhHHHHHHHHhcC
Confidence            47899999 9999999999998864 4   688888755432222211        335555555433   335667776


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      .|+|||++-.        . .        ...++++|.+.|    +-|++++
T Consensus        84 ~DvVIN~s~~--------~-~--------~l~Im~acleaG----v~YlDTa  114 (480)
T 2ph5_A           84 NDFLIDVSIG--------I-S--------SLALIILCNQKG----ALYINAA  114 (480)
T ss_dssp             TCEEEECCSS--------S-C--------HHHHHHHHHHHT----CEEEESS
T ss_pred             CCEEEECCcc--------c-c--------CHHHHHHHHHcC----CCEEECC
Confidence            7999986532        1 1        467999999998    4466665

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.17  E-value=0.00052  Score=60.47  Aligned_cols=75  Identities=15%  Similarity=0.171  Sum_probs=53.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC---chhhh--CC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN---FDEPI--RG   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~--~~   77 (338)
                      ..++|+|+||+|-+|..+++.+... |.+|+++++++++.+..+.+.        .. ...|..+.+.   +.++.  .+
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g--------~~-~~~~~~~~~~~~~~~~~~~~~~  240 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAG--------AD-YVINASMQDPLAEIRRITESKG  240 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC--------CC-EEecCCCccHHHHHHHHhcCCC
Confidence            3579999999999999999999998 999999998876655544331        11 1135545433   33333  36


Q ss_pred             ccEEEEeccc
Q 040253           78 CTGVFHLATP   87 (338)
Q Consensus        78 ~d~vi~~a~~   87 (338)
                      +|+||++++.
T Consensus       241 ~d~vi~~~g~  250 (347)
T 1jvb_A          241 VDAVIDLNNS  250 (347)
T ss_dssp             EEEEEESCCC
T ss_pred             ceEEEECCCC
Confidence            9999999983

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.15  E-value=0.00043  Score=58.94  Aligned_cols=78  Identities=14%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++++|+|+ |-+|+.++..|.+.|. +|++++|+.++...+........  +.+.+...   +.+++.+.+.++|+||
T Consensus       126 ~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~--~~~~i~~~---~~~~l~~~l~~~DiVI  199 (283)
T 3jyo_A          126 KLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAV--GREAVVGV---DARGIEDVIAAADGVV  199 (283)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHH--TSCCEEEE---CSTTHHHHHHHSSEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhc--CCceEEEc---CHHHHHHHHhcCCEEE
Confidence            4689999997 8899999999999997 79999998776655533221000  11222222   2345667777899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      ++...
T Consensus       200 naTp~  204 (283)
T 3jyo_A          200 NATPM  204 (283)
T ss_dssp             ECSST
T ss_pred             ECCCC
Confidence            98753

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.14  E-value=0.00035  Score=60.76  Aligned_cols=69  Identities=17%  Similarity=0.026  Sum_probs=48.8

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCC---cH-HHHHHHhcCCCCCCcEEEEecccCCCC-CchhhhC
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPD---NK-KKVKHLLELPKASTHLTLWKADLAEEG-NFDEPIR   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~---~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~   76 (338)
                      +|+|+|.|+| .|.+|..+++.|++.| ++|++.+|+++   .. ...+.+..     .++         .. +..++++
T Consensus        22 ~M~m~IgvIG-~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~-----~g~---------~~~s~~e~~~   86 (317)
T 4ezb_A           22 SMMTTIAFIG-FGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAE-----LGV---------EPLDDVAGIA   86 (317)
T ss_dssp             TSCCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHH-----TTC---------EEESSGGGGG
T ss_pred             ccCCeEEEEC-ccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHH-----CCC---------CCCCHHHHHh
Confidence            3568999998 8999999999999999 99999999862   11 11122111     122         23 4556777


Q ss_pred             CccEEEEecc
Q 040253           77 GCTGVFHLAT   86 (338)
Q Consensus        77 ~~d~vi~~a~   86 (338)
                      ++|+||-+..
T Consensus        87 ~aDvVi~avp   96 (317)
T 4ezb_A           87 CADVVLSLVV   96 (317)
T ss_dssp             GCSEEEECCC
T ss_pred             cCCEEEEecC
Confidence            8999987764

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.14  E-value=0.0006  Score=59.05  Aligned_cols=67  Identities=19%  Similarity=0.233  Sum_probs=51.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .||+|.|+| .|.+|..+++.|.+.|++|++.+|+++..+.+...        ++.       -..++.++++++|+||-
T Consensus        20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------g~~-------~~~~~~~~~~~aDvvi~   83 (310)
T 3doj_A           20 HMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEH--------GAS-------VCESPAEVIKKCKYTIA   83 (310)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT--------TCE-------ECSSHHHHHHHCSEEEE
T ss_pred             cCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC--------CCe-------EcCCHHHHHHhCCEEEE
Confidence            468999997 89999999999999999999999988776655431        221       13455667778899987


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        84 ~vp   86 (310)
T 3doj_A           84 MLS   86 (310)
T ss_dssp             CCS
T ss_pred             EcC
Confidence            654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.11  E-value=0.0017  Score=59.45  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=33.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-CC-eEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-GY-AVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~-~V~~~~r~~~   40 (338)
                      .+|+|.|+| +|++|..++..|++. |+ +|++++|+++
T Consensus        17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            357999997 899999999999999 99 9999999987

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.11  E-value=0.0013  Score=57.51  Aligned_cols=94  Identities=17%  Similarity=0.090  Sum_probs=56.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |++|.|.||+|++|+.+++.|.+++   .++..+....+....+    .  .....+.+  .|+ +++    .+.++|+|
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~----~--~~~~~i~~--~~~-~~~----~~~~vDvV   69 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTY----R--FNGKTVRV--QNV-EEF----DWSQVHIA   69 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEE----E--ETTEEEEE--EEG-GGC----CGGGCSEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCce----e--ecCceeEE--ecC-ChH----HhcCCCEE
Confidence            6899999999999999999999873   4666665321110000    0  00012222  222 222    23579999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      |-+.+.          .       .+...+..+.+.| + ++|-.|+..
T Consensus        70 f~a~g~----------~-------~s~~~a~~~~~~G-~-~vId~s~~~   99 (336)
T 2r00_A           70 LFSAGG----------E-------LSAKWAPIAAEAG-V-VVIDNTSHF   99 (336)
T ss_dssp             EECSCH----------H-------HHHHHHHHHHHTT-C-EEEECSSTT
T ss_pred             EECCCc----------h-------HHHHHHHHHHHcC-C-EEEEcCCcc
Confidence            988762          1       1345566666777 4 688888764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.11  E-value=0.00043  Score=59.71  Aligned_cols=73  Identities=22%  Similarity=0.141  Sum_probs=52.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+.+|+|+||+|-+|..+++.+...|.+|+++++++++.+..+.+.        ... ..|..+.+++.+.+.++|+||+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g--------a~~-~~~~~~~~~~~~~~~~~d~vid  195 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALG--------AEE-AATYAEVPERAKAWGGLDLVLE  195 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTT--------CSE-EEEGGGHHHHHHHTTSEEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcC--------CCE-EEECCcchhHHHHhcCceEEEE
Confidence            3579999999999999999999999999999999877665554321        111 1243331223334478999999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                       ++
T Consensus       196 -~g  197 (302)
T 1iz0_A          196 -VR  197 (302)
T ss_dssp             -CS
T ss_pred             -CC
Confidence             87

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.11  E-value=0.00032  Score=60.51  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=51.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++++|+|+ |-.|+.++..|.+.|. +|++++|+.+..++.+.+...-....+......++.+.+.+.+.+.++|+||
T Consensus       147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiII  225 (312)
T 3t4e_A          147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILT  225 (312)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEE
Confidence            4689999996 8899999999999997 8999999944333322221100000112222233333222345567899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      ++...
T Consensus       226 NaTp~  230 (312)
T 3t4e_A          226 NGTKV  230 (312)
T ss_dssp             ECSST
T ss_pred             ECCcC
Confidence            98753

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.10  E-value=0.0015  Score=57.54  Aligned_cols=32  Identities=16%  Similarity=0.304  Sum_probs=27.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATV   36 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   36 (338)
                      ++||.|.||+|++|+.+++.|.+.. .++..+.
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~   36 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS   36 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence            5799999999999999999998764 4777775

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.09  E-value=0.00061  Score=61.38  Aligned_cols=80  Identities=10%  Similarity=0.101  Sum_probs=50.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEE-E---ecccCCCCCchhhhCCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL-W---KADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~---~~Dl~d~~~~~~~~~~~d   79 (338)
                      .+|+|.|+| +|++|..++..|.+ |++|++++|+++..+.+..-. .+...++++- +   .+.+.-..++.++++++|
T Consensus        35 ~~mkIaVIG-lG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~-~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aD  111 (432)
T 3pid_A           35 EFMKITISG-TGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKI-SPIVDKEIQEYLAEKPLNFRATTDKHDAYRNAD  111 (432)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTC-CSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCS
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccC-CccccccHHHHHhhccCCeEEEcCHHHHHhCCC
Confidence            357999998 79999999999887 999999999877655543310 0100011000 0   011222344567788999


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +||-+..
T Consensus       112 vViiaVP  118 (432)
T 3pid_A          112 YVIIATP  118 (432)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9987654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.08  E-value=0.0011  Score=58.44  Aligned_cols=74  Identities=15%  Similarity=0.092  Sum_probs=50.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEec------cc-CCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKA------DL-AEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------Dl-~d~~~~~~~~~~   77 (338)
                      +|+|.|+| +|.+|+.++..|.+.|++|.+++|+++..+.+....       .+.+...      .+ ....++.+++.+
T Consensus         4 ~mki~iiG-~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (359)
T 1bg6_A            4 SKTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG-------AIIAEGPGLAGTAHPDLLTSDIGLAVKD   75 (359)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT-------SEEEESSSCCEEECCSEEESCHHHHHTT
T ss_pred             cCeEEEEC-CCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC-------CeEEeccccccccccceecCCHHHHHhc
Confidence            47999998 599999999999999999999999876655544321       1111111      11 012345566778


Q ss_pred             ccEEEEecc
Q 040253           78 CTGVFHLAT   86 (338)
Q Consensus        78 ~d~vi~~a~   86 (338)
                      +|+||-+..
T Consensus        76 ~D~vi~~v~   84 (359)
T 1bg6_A           76 ADVILIVVP   84 (359)
T ss_dssp             CSEEEECSC
T ss_pred             CCEEEEeCC
Confidence            999998774

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.08  E-value=0.00046  Score=59.07  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=50.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||+|.|+| .|.+|..+++.|.+.|++|++.+|+++..+.+...        ++.       -..+..++++++|+||-+
T Consensus         1 M~~I~iiG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~-------~~~~~~~~~~~advvi~~   64 (287)
T 3pdu_A            1 MTTYGFLG-LGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL--------GAR-------QASSPAEVCAACDITIAM   64 (287)
T ss_dssp             CCCEEEEC-CSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH--------TCE-------ECSCHHHHHHHCSEEEEC
T ss_pred             CCeEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CCe-------ecCCHHHHHHcCCEEEEE
Confidence            46899997 89999999999999999999999998776655432        111       123456677788999877


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        65 v~   66 (287)
T 3pdu_A           65 LA   66 (287)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.07  E-value=0.0002  Score=61.40  Aligned_cols=78  Identities=8%  Similarity=0.058  Sum_probs=50.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++++|+|++ -+|+.++..|++.| +|++.+|+.++...+......... .. ..+.+|+.+   +.+.+.++|+||+
T Consensus       127 ~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~-~~-~~~~~d~~~---~~~~~~~~DilVn  199 (287)
T 1nvt_A          127 KDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLN-KK-FGEEVKFSG---LDVDLDGVDIIIN  199 (287)
T ss_dssp             CSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHT-CC-HHHHEEEEC---TTCCCTTCCEEEE
T ss_pred             CCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcc-cc-cceeEEEee---HHHhhCCCCEEEE
Confidence            46899999975 99999999999999 999999986654444322110000 00 001223333   2445668999999


Q ss_pred             ecccC
Q 040253           84 LATPM   88 (338)
Q Consensus        84 ~a~~~   88 (338)
                      +++..
T Consensus       200 ~ag~~  204 (287)
T 1nvt_A          200 ATPIG  204 (287)
T ss_dssp             CSCTT
T ss_pred             CCCCC
Confidence            99853

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.06  E-value=0.00021  Score=61.48  Aligned_cols=75  Identities=9%  Similarity=0.042  Sum_probs=52.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|+|+|+ |.+|+.++..|.+.|. +|++.+|+.++...+.......   ..      +..+.+++.+.+.++|+||
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~---~~------~~~~~~~~~~~~~~aDivI  209 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDER---RS------AYFSLAEAETRLAEYDIII  209 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSS---SC------CEECHHHHHHTGGGCSEEE
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhc---cC------ceeeHHHHHhhhccCCEEE
Confidence            4689999996 7799999999999997 9999999876655544322110   00      1112234556677899999


Q ss_pred             EecccC
Q 040253           83 HLATPM   88 (338)
Q Consensus        83 ~~a~~~   88 (338)
                      ++.+..
T Consensus       210 n~t~~~  215 (297)
T 2egg_A          210 NTTSVG  215 (297)
T ss_dssp             ECSCTT
T ss_pred             ECCCCC
Confidence            999753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.05  E-value=0.001  Score=58.65  Aligned_cols=95  Identities=18%  Similarity=0.168  Sum_probs=61.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC---chhhh--CCc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN---FDEPI--RGC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~--~~~   78 (338)
                      ..+|||+|+ |-+|..+++.+...|. +|++++|++++.+..+.+.        +.. ..|..+.+.   +.++.  .++
T Consensus       168 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~G--------a~~-~~~~~~~~~~~~v~~~~~g~g~  237 (348)
T 2d8a_A          168 GKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG--------ADY-VINPFEEDVVKEVMDITDGNGV  237 (348)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHT--------CSE-EECTTTSCHHHHHHHHTTTSCE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC--------CCE-EECCCCcCHHHHHHHHcCCCCC
Confidence            578999999 9999999999999998 9999998866555444332        111 124443322   22222  269


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |+||++++.       .  .       .....++.++..+   +++.+++
T Consensus       238 D~vid~~g~-------~--~-------~~~~~~~~l~~~G---~iv~~g~  268 (348)
T 2d8a_A          238 DVFLEFSGA-------P--K-------ALEQGLQAVTPAG---RVSLLGL  268 (348)
T ss_dssp             EEEEECSCC-------H--H-------HHHHHHHHEEEEE---EEEECCC
T ss_pred             CEEEECCCC-------H--H-------HHHHHHHHHhcCC---EEEEEcc
Confidence            999999873       0  1       1234455555444   7887775

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.04  E-value=0.00055  Score=57.60  Aligned_cols=68  Identities=16%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +||+|.|+| +|.+|+.+++.|.+.|++|.+.+|+++....+....       +       +.-..++.++++++|+||-
T Consensus         2 ~~m~i~iiG-~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-------g-------~~~~~~~~~~~~~~D~Vi~   66 (259)
T 2ahr_A            2 NAMKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL-------A-------LPYAMSHQDLIDQVDLVIL   66 (259)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH-------T-------CCBCSSHHHHHHTCSEEEE
T ss_pred             CccEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc-------C-------CEeeCCHHHHHhcCCEEEE
Confidence            467999998 899999999999999999999988866554443211       1       1112345566778999997


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        67 ~v~   69 (259)
T 2ahr_A           67 GIK   69 (259)
T ss_dssp             CSC
T ss_pred             EeC
Confidence            764

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.03  E-value=0.0017  Score=53.81  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=27.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEE-EcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRAT-VRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~-~r~~   39 (338)
                      |+||.|+|+ |.+|+.+++.+.+.+.++.+. +|+.
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~   37 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTP   37 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCc
Confidence            689999999 999999999999887666653 4443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.01  E-value=0.00087  Score=57.63  Aligned_cols=67  Identities=13%  Similarity=0.211  Sum_probs=51.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .|+||-++| .|..|..++++|++.||+|++.+|++++.+.+...        ++       .-.++..++.+++|+||-
T Consensus         2 ~M~kIgfIG-lG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~--------Ga-------~~a~s~~e~~~~~dvv~~   65 (300)
T 3obb_A            2 HMKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA--------GA-------SAARSARDAVQGADVVIS   65 (300)
T ss_dssp             -CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT--------TC-------EECSSHHHHHTTCSEEEE
T ss_pred             CcCEEEEee-ehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHc--------CC-------EEcCCHHHHHhcCCceee
Confidence            368999998 99999999999999999999999987776655431        21       123456677888899887


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      |..
T Consensus        66 ~l~   68 (300)
T 3obb_A           66 MLP   68 (300)
T ss_dssp             CCS
T ss_pred             cCC
Confidence            764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.98  E-value=0.00091  Score=58.18  Aligned_cols=67  Identities=22%  Similarity=0.267  Sum_probs=50.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+|.|+| .|.+|..+++.|.+.|++|.+.+|+++..+.+..        .++.       -..++.++++++|+||-
T Consensus        30 ~~~~I~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~--------~g~~-------~~~~~~e~~~~aDvVi~   93 (320)
T 4dll_A           30 YARKITFLG-TGSMGLPMARRLCEAGYALQVWNRTPARAASLAA--------LGAT-------IHEQARAAARDADIVVS   93 (320)
T ss_dssp             CCSEEEEEC-CTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT--------TTCE-------EESSHHHHHTTCSEEEE
T ss_pred             CCCEEEEEC-ccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH--------CCCE-------eeCCHHHHHhcCCEEEE
Confidence            357999997 7999999999999999999999998766554432        1221       23456677888999987


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        94 ~vp   96 (320)
T 4dll_A           94 MLE   96 (320)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            654

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.98  E-value=0.0012  Score=55.92  Aligned_cols=73  Identities=12%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|+|+|+ |.+|+.++..|++.|.+|++.+|+.++...+.......   ..+..  .|+   +++.+  .++|+||+
T Consensus       118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~---~~~~~--~~~---~~~~~--~~~DivIn  186 (272)
T 1p77_A          118 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQA--VSM---DSIPL--QTYDLVIN  186 (272)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEE--EEG---GGCCC--SCCSEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc---CCeEE--eeH---HHhcc--CCCCEEEE
Confidence            4689999997 77999999999999999999999877665554332110   12222  222   11111  37899999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +++.
T Consensus       187 ~t~~  190 (272)
T 1p77_A          187 ATSA  190 (272)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9974

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.97  E-value=0.00034  Score=62.37  Aligned_cols=75  Identities=13%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|+|+|+ |-+|..+++.+...|.+|++++|+++..+.......     ..+.   .+..+.+++.+++.++|+||.
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g-----~~~~---~~~~~~~~l~~~l~~aDvVi~  237 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFC-----GRIH---TRYSSAYELEGAVKRADLVIG  237 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT-----TSSE---EEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcC-----CeeE---eccCCHHHHHHHHcCCCEEEE
Confidence            3689999997 999999999999999999999998766554443221     1111   122233456677778999999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +++.
T Consensus       238 ~~~~  241 (377)
T 2vhw_A          238 AVLV  241 (377)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            8863

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.97  E-value=0.0011  Score=56.50  Aligned_cols=40  Identities=28%  Similarity=0.375  Sum_probs=34.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      +++|.|+| +|.+|+.+++.|++.|++|++.+|+++..+..
T Consensus         4 ~~kV~VIG-aG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~   43 (283)
T 4e12_A            4 ITNVTVLG-TGVLGSQIAFQTAFHGFAVTAYDINTDALDAA   43 (283)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            57999997 69999999999999999999999987655443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.97  E-value=0.00092  Score=57.16  Aligned_cols=65  Identities=20%  Similarity=0.348  Sum_probs=50.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|.|+| .|.+|..+++.|.+.|++|++.+|+++..+.+...        ++       .-..++.++++++|+||-+.
T Consensus         2 ~~i~iIG-~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~-------~~~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIG-LGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL--------GA-------ERAATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT--------TC-------EECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC--------CC-------eecCCHHHHHhcCCEEEEEc
Confidence            6899998 79999999999999999999999988776655431        22       12345667777889998765


Q ss_pred             c
Q 040253           86 T   86 (338)
Q Consensus        86 ~   86 (338)
                      .
T Consensus        66 p   66 (287)
T 3pef_A           66 A   66 (287)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.96  E-value=0.00071  Score=58.49  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|+|.|+| .|.+|..+++.|.+.|++|++.+|+++..+.+...        ++       ....++.++++++|+||-+
T Consensus         9 ~~~IgiIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~-------~~~~~~~e~~~~aDvVi~~   72 (306)
T 3l6d_A            9 EFDVSVIG-LGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA--------GA-------HLCESVKAALSASPATIFV   72 (306)
T ss_dssp             SCSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH--------TC-------EECSSHHHHHHHSSEEEEC
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------CC-------eecCCHHHHHhcCCEEEEE
Confidence            57899997 89999999999999999999999987665554331        11       1234566777789999977


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        73 vp   74 (306)
T 3l6d_A           73 LL   74 (306)
T ss_dssp             CS
T ss_pred             eC
Confidence            64

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.96  E-value=0.00093  Score=57.44  Aligned_cols=66  Identities=18%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|+|.|+| +|.+|..+++.|.+.|++|.+.+|+++..+.+..        .++.       ...++.++++++|+||.+
T Consensus         5 ~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------~g~~-------~~~~~~~~~~~~D~vi~~   68 (299)
T 1vpd_A            5 TMKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA--------AGAE-------TASTAKAIAEQCDVIITM   68 (299)
T ss_dssp             -CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH--------TTCE-------ECSSHHHHHHHCSEEEEC
T ss_pred             cceEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH--------CCCe-------ecCCHHHHHhCCCEEEEE
Confidence            46999998 7999999999999999999999887665544432        1222       123455667789999977


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        69 v~   70 (299)
T 1vpd_A           69 LP   70 (299)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.95  E-value=0.00073  Score=58.57  Aligned_cols=68  Identities=19%  Similarity=0.178  Sum_probs=47.4

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC--CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP--DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      +.+|+|.|+| .|.+|..+++.|.+.|+ +|++.+|++  +..+....        .++.       -..+..++++++|
T Consensus        22 ~~~~~I~iIG-~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~--------~g~~-------~~~~~~e~~~~aD   85 (312)
T 3qsg_A           22 SNAMKLGFIG-FGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEE--------LGVS-------CKASVAEVAGECD   85 (312)
T ss_dssp             ---CEEEEEC-CSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH--------TTCE-------ECSCHHHHHHHCS
T ss_pred             CCCCEEEEEC-ccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH--------CCCE-------EeCCHHHHHhcCC
Confidence            3468999998 79999999999999999 999999974  33332221        1222       1234566777899


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +||-+..
T Consensus        86 vVi~~vp   92 (312)
T 3qsg_A           86 VIFSLVT   92 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEEecC
Confidence            9997764

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.93  E-value=0.0057  Score=50.71  Aligned_cols=72  Identities=15%  Similarity=0.162  Sum_probs=49.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----Ccc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----GCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d   79 (338)
                      |||.|+|++|.+|+.+++.+.+. ++++.++.....+.+....        .++. +..|++.++...+.+.     +.+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~--------~~~D-vvIDfT~p~a~~~~~~~a~~~g~~   71 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD--------GNTE-VVIDFTHPDVVMGNLEFLIDNGIH   71 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH--------TTCC-EEEECSCTTTHHHHHHHHHHTTCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc--------cCCc-EEEEccChHHHHHHHHHHHHcCCC
Confidence            48999999999999999999876 7888877654433332211        1222 5668888887765442     678


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +|+-+.|
T Consensus        72 ~VigTTG   78 (245)
T 1p9l_A           72 AVVGTTG   78 (245)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCC
Confidence            8875544

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.92  E-value=0.0015  Score=56.58  Aligned_cols=66  Identities=20%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +|+|.|+| .|.+|+.+++.|.+.|++|.+.+|+++..+.+..        .++..       ..+..++++++|+||-+
T Consensus        30 ~~~I~iIG-~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------~g~~~-------~~~~~~~~~~~DvVi~a   93 (316)
T 2uyy_A           30 DKKIGFLG-LGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ--------EGARL-------GRTPAEVVSTCDITFAC   93 (316)
T ss_dssp             SSCEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH--------TTCEE-------CSCHHHHHHHCSEEEEC
T ss_pred             CCeEEEEc-ccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH--------cCCEE-------cCCHHHHHhcCCEEEEe
Confidence            47899998 7999999999999999999999998776555432        12221       12345566778999877


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        94 v~   95 (316)
T 2uyy_A           94 VS   95 (316)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.92  E-value=0.00094  Score=58.92  Aligned_cols=66  Identities=14%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCc---cEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGC---TGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~---d~v   81 (338)
                      +|+|.|+| .|.+|..+++.|++.|++|.+.+|+++..+.+..        .       .+....++.++++++   |+|
T Consensus        22 ~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~--------~-------g~~~~~s~~e~~~~a~~~DvV   85 (358)
T 4e21_A           22 SMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLNVNAVQALER--------E-------GIAGARSIEEFCAKLVKPRVV   85 (358)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT--------T-------TCBCCSSHHHHHHHSCSSCEE
T ss_pred             CCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH--------C-------CCEEeCCHHHHHhcCCCCCEE
Confidence            47999998 8999999999999999999999998766554432        1       122234455555544   999


Q ss_pred             EEecc
Q 040253           82 FHLAT   86 (338)
Q Consensus        82 i~~a~   86 (338)
                      |-+..
T Consensus        86 i~~vp   90 (358)
T 4e21_A           86 WLMVP   90 (358)
T ss_dssp             EECSC
T ss_pred             EEeCC
Confidence            87764

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.92  E-value=0.0015  Score=57.32  Aligned_cols=70  Identities=27%  Similarity=0.265  Sum_probs=49.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh----h--CC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP----I--RG   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~----~--~~   77 (338)
                      ...+|||+||+|-+|..+++.+...|.+|+++ +++++.+..+.+        ++..  .| .+ +++.+.    .  .+
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~l--------Ga~~--i~-~~-~~~~~~~~~~~~~~g  216 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDL--------GATP--ID-AS-REPEDYAAEHTAGQG  216 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHH--------TSEE--EE-TT-SCHHHHHHHHHTTSC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHc--------CCCE--ec-cC-CCHHHHHHHHhcCCC
Confidence            35799999999999999999999999999988 665554444433        2233  33 22 223332    2  26


Q ss_pred             ccEEEEecc
Q 040253           78 CTGVFHLAT   86 (338)
Q Consensus        78 ~d~vi~~a~   86 (338)
                      +|+||++++
T Consensus       217 ~D~vid~~g  225 (343)
T 3gaz_A          217 FDLVYDTLG  225 (343)
T ss_dssp             EEEEEESSC
T ss_pred             ceEEEECCC
Confidence            999999987

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.89  E-value=0.0022  Score=58.26  Aligned_cols=80  Identities=15%  Similarity=0.200  Sum_probs=53.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEE------EecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL------WKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~d~~~~~~~~~~~d   79 (338)
                      -+|.|+| .|++|..++..|+++|++|++.+|+++..+.+..- ..+...++++-      ..+.+.-..++.++++++|
T Consensus         9 ~~~~vIG-lG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g-~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD   86 (446)
T 4a7p_A            9 VRIAMIG-TGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQN-VMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD   86 (446)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTT-CCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred             eEEEEEc-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcC-CCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence            5788997 99999999999999999999999999887665431 11111111110      0011222345567788999


Q ss_pred             EEEEeccc
Q 040253           80 GVFHLATP   87 (338)
Q Consensus        80 ~vi~~a~~   87 (338)
                      +||-+.+.
T Consensus        87 vvii~Vpt   94 (446)
T 4a7p_A           87 AVFIAVGT   94 (446)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEcCC
Confidence            99988653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.88  E-value=0.0012  Score=60.60  Aligned_cols=81  Identities=15%  Similarity=0.090  Sum_probs=51.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEE-EE-----ecccCCCCCchhhhCCc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLT-LW-----KADLAEEGNFDEPIRGC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~-----~~Dl~d~~~~~~~~~~~   78 (338)
                      .|+|.|+| +|++|..++..|.+.|++|++++|+++..+.+..-. .+...++++ .+     .+.+.-..++.++++++
T Consensus         8 ~~~I~VIG-~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~-~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~a   85 (478)
T 2y0c_A            8 SMNLTIIG-SGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGG-VPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHG   85 (478)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred             CceEEEEC-cCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCC-CCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcC
Confidence            47999997 999999999999999999999999876655544311 111111110 00     00111123344566788


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+||-+...
T Consensus        86 DvviiaVpt   94 (478)
T 2y0c_A           86 DVQFIAVGT   94 (478)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEEeCC
Confidence            999988753

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.87  E-value=0.0061  Score=44.59  Aligned_cols=84  Identities=14%  Similarity=0.060  Sum_probs=54.6

Q ss_pred             CCCcEEEEeCCc---hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            3 SIAETVCVTGAS---GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         3 ~~~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      ..+++|.|.|+|   +..|..+++.|++.|++|+-+......                   + ....-..++.++-. +|
T Consensus         2 ~~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~-------------------i-~G~~~y~sl~dlp~-vD   60 (122)
T 3ff4_A            2 NAMKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE-------------------V-LGKTIINERPVIEG-VD   60 (122)
T ss_dssp             CCCCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE-------------------E-TTEECBCSCCCCTT-CC
T ss_pred             CCCCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc-------------------C-CCeeccCChHHCCC-CC
Confidence            346899999998   789999999999999988877543221                   1 12222333444445 78


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEE
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF  125 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~  125 (338)
                      .++-+...                 ..+..+++.|.+.+ ++.+++
T Consensus        61 lavi~~p~-----------------~~v~~~v~e~~~~g-~k~v~~   88 (122)
T 3ff4_A           61 TVTLYINP-----------------QNQLSEYNYILSLK-PKRVIF   88 (122)
T ss_dssp             EEEECSCH-----------------HHHGGGHHHHHHHC-CSEEEE
T ss_pred             EEEEEeCH-----------------HHHHHHHHHHHhcC-CCEEEE
Confidence            77755431                 11345677787788 776553

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.86  E-value=0.0031  Score=52.70  Aligned_cols=104  Identities=17%  Similarity=0.210  Sum_probs=61.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC-------------------CcHHHHHH-HhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP-------------------DNKKKVKH-LLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~-~~~~~~~~~~~~~~~~   63 (338)
                      .++|+|.|+ |-+|+++++.|...|. ++.+++++.                   .+.+.... +.... ..-+++.+..
T Consensus        28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~v~~~~~  105 (251)
T 1zud_1           28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN-PDIQLTALQQ  105 (251)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC-TTSEEEEECS
T ss_pred             cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC-CCCEEEEEec
Confidence            468999995 5599999999999995 777776543                   22222211 11111 0123455554


Q ss_pred             ccCCCCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           64 DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        64 Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +++ .+.+.++++++|+||.+..        +.        ..-..+.+++...+ ++ +|+.+..
T Consensus       106 ~~~-~~~~~~~~~~~DvVi~~~d--------~~--------~~r~~l~~~~~~~~-~p-~i~~~~~  152 (251)
T 1zud_1          106 RLT-GEALKDAVARADVVLDCTD--------NM--------ATRQEINAACVALN-TP-LITASAV  152 (251)
T ss_dssp             CCC-HHHHHHHHHHCSEEEECCS--------SH--------HHHHHHHHHHHHTT-CC-EEEEEEE
T ss_pred             cCC-HHHHHHHHhcCCEEEECCC--------CH--------HHHHHHHHHHHHhC-CC-EEEEecc
Confidence            443 2345567778999997743        11        11234566777776 44 6666543

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.86  E-value=0.0014  Score=59.26  Aligned_cols=69  Identities=19%  Similarity=0.247  Sum_probs=53.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ++++|+|+| +|.+|+.+++.+.+.|++|++++.++......  .       . -+.+..|..|.+.+.++.+++|+|+.
T Consensus        34 ~~~~IlIlG-~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~--~-------a-d~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           34 PGAWLGMVG-GGQLGRMFCFAAQSMGYRVAVLDPDPASPAGA--V-------A-DRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCTTCHHHH--H-------S-SEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCcCchhh--h-------C-CEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            467999998 68999999999999999999987765443211  1       1 14566888898888888889999883

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.84  E-value=0.00068  Score=56.60  Aligned_cols=66  Identities=14%  Similarity=0.173  Sum_probs=49.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC----eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY----AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~----~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      +|+|.|+| +|.+|+.+++.|.+.|+    +|.+.+|+++..+.+....       ++.       -..+..++++++|+
T Consensus         2 ~~~i~iIG-~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~-------g~~-------~~~~~~e~~~~aDv   66 (247)
T 3gt0_A            2 DKQIGFIG-CGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY-------GLT-------TTTDNNEVAKNADI   66 (247)
T ss_dssp             CCCEEEEC-CSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH-------CCE-------ECSCHHHHHHHCSE
T ss_pred             CCeEEEEC-ccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh-------CCE-------EeCChHHHHHhCCE
Confidence            57899998 99999999999999998    9999999877655543211       122       12344566777899


Q ss_pred             EEEec
Q 040253           81 VFHLA   85 (338)
Q Consensus        81 vi~~a   85 (338)
                      ||-+.
T Consensus        67 Vilav   71 (247)
T 3gt0_A           67 LILSI   71 (247)
T ss_dssp             EEECS
T ss_pred             EEEEe
Confidence            98776

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.83  E-value=0.0019  Score=59.00  Aligned_cols=44  Identities=27%  Similarity=0.308  Sum_probs=37.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH   47 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~   47 (338)
                      .+++|||+||+|-||..+++.+...|.+|+++++++++.+..+.
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~  263 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA  263 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            36899999999999999999999999999999987665555443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.82  E-value=0.0011  Score=56.06  Aligned_cols=67  Identities=12%  Similarity=0.192  Sum_probs=47.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +|+|.|+| +|.+|+.+++.|.+.|++ |.+.+|+++....+....       ++..       ..++.++++++|+||-
T Consensus        10 ~m~i~iiG-~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~~Dvvi~   74 (266)
T 3d1l_A           10 DTPIVLIG-AGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV-------EAEY-------TTDLAEVNPYAKLYIV   74 (266)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT-------TCEE-------ESCGGGSCSCCSEEEE
T ss_pred             CCeEEEEc-CCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc-------CCce-------eCCHHHHhcCCCEEEE
Confidence            57899998 599999999999999998 888888766554443211       2222       1234456678999997


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        75 av~   77 (266)
T 3d1l_A           75 SLK   77 (266)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            754

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.82  E-value=0.0035  Score=56.73  Aligned_cols=122  Identities=11%  Similarity=0.067  Sum_probs=74.4

Q ss_pred             CCCCCcEEEEeCCchh-hHHHHHHHHHH----CCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh
Q 040253            1 MGSIAETVCVTGASGF-IGSWLIMRLLE----RGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI   75 (338)
Q Consensus         1 m~~~~~~ilVtGatG~-iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   75 (338)
                      |+++.+||.|+||.+. -|..++..|+.    .| +|...+++++..+........-.   .   ....+.-..++.+++
T Consensus         1 m~m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~---~---~~~~I~~TtD~~eAl   73 (450)
T 3fef_A            1 MSLDQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSG---N---GRWRYEAVSTLKKAL   73 (450)
T ss_dssp             --CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTST---T---SCEEEEEESSHHHHH
T ss_pred             CCCCCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHh---c---cCCeEEEECCHHHHh
Confidence            6666789999996543 48899998886    46 89999998766554444333211   1   112222345677889


Q ss_pred             CCccEEEEecccCCCC--------CCCcc---c--hhhh--------hhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           76 RGCTGVFHLATPMDFE--------SKDPE---N--EVIR--------PTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~~--------~~~~~---~--~~~~--------~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +++|.||..+......        ..++.   .  ++.-        .|+.....+++.+++..+-..+|.+|..
T Consensus        74 ~dADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNP  148 (450)
T 3fef_A           74 SAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNP  148 (450)
T ss_dssp             TTCSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             cCCCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            9999999998432100        00000   0  1122        4677778888888876646778877764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.82  E-value=0.0015  Score=58.03  Aligned_cols=74  Identities=11%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHH-HHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK-HLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ...+|||+|+ |-+|..+++.+...|.+|+++++++++.+... .+        +... ..|..+.+.+.++..++|+||
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l--------Ga~~-v~~~~~~~~~~~~~~~~D~vi  256 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF--------GADS-FLVSRDQEQMQAAAGTLDGII  256 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS--------CCSE-EEETTCHHHHHHTTTCEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--------CCce-EEeccCHHHHHHhhCCCCEEE
Confidence            4579999996 99999999999999999999999876655433 21        1111 124445444555556899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      ++++.
T Consensus       257 d~~g~  261 (366)
T 1yqd_A          257 DTVSA  261 (366)
T ss_dssp             ECCSS
T ss_pred             ECCCc
Confidence            99984

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.81  E-value=0.0037  Score=55.33  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=63.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh----hC--C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP----IR--G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~----~~--~   77 (338)
                      ...+|||+| +|-+|...++.+...|.+|+++++++++.+..+.+..        ..+ .| .+.+++.+.    ..  +
T Consensus       189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa--------~~v-i~-~~~~~~~~~v~~~~~g~g  257 (363)
T 3uog_A          189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA--------DHG-IN-RLEEDWVERVYALTGDRG  257 (363)
T ss_dssp             TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC--------SEE-EE-TTTSCHHHHHHHHHTTCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC--------CEE-Ec-CCcccHHHHHHHHhCCCC
Confidence            357999999 8999999999999999999999988766665554321        111 23 333333332    22  6


Q ss_pred             ccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           78 CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +|+||.+++.      ..           ....++.++..|   +++.++..
T Consensus       258 ~D~vid~~g~------~~-----------~~~~~~~l~~~G---~iv~~G~~  289 (363)
T 3uog_A          258 ADHILEIAGG------AG-----------LGQSLKAVAPDG---RISVIGVL  289 (363)
T ss_dssp             EEEEEEETTS------SC-----------HHHHHHHEEEEE---EEEEECCC
T ss_pred             ceEEEECCCh------HH-----------HHHHHHHhhcCC---EEEEEecC
Confidence            9999999982      11           233455555544   78877653

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.81  E-value=0.015  Score=43.99  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             CcEEEEeCCc---hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGAS---GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .++|.|.|++   |.+|..+++.|.+.|++|+.+  ++...              .+    ..+.-..++.++...+|.+
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~V--np~~~--------------~i----~G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPV--NPKYE--------------EV----LGRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--CTTCS--------------EE----TTEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEE--CCCCC--------------eE----CCeeccCCHHHcCCCCCEE
Confidence            5789999998   899999999999999986544  44321              01    1222234445555578988


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +-+...                 .....+++.|.+.+ ++.+++.+
T Consensus        82 vi~vp~-----------------~~~~~vv~~~~~~g-i~~i~~~~  109 (144)
T 2d59_A           82 DLFVKP-----------------KLTMEYVEQAIKKG-AKVVWFQY  109 (144)
T ss_dssp             EECSCH-----------------HHHHHHHHHHHHHT-CSEEEECT
T ss_pred             EEEeCH-----------------HHHHHHHHHHHHcC-CCEEEECC
Confidence            865431                 11455677777777 77666443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.81  E-value=0.0014  Score=56.41  Aligned_cols=69  Identities=19%  Similarity=0.117  Sum_probs=48.1

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      |+ .+|+|.|+| .|.+|+.+++.|.+.|++|.+.+|+++....+..        .++..       ..++.++++++|+
T Consensus         1 M~-~~~~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~--------~g~~~-------~~~~~~~~~~~D~   63 (301)
T 3cky_A            1 ME-KSIKIGFIG-LGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVA--------QGAQA-------CENNQKVAAASDI   63 (301)
T ss_dssp             ----CCEEEEEC-CCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHT--------TTCEE-------CSSHHHHHHHCSE
T ss_pred             CC-CCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH--------CCCee-------cCCHHHHHhCCCE
Confidence            44 357899998 7999999999999999999999887655443322        12221       2345566677899


Q ss_pred             EEEecc
Q 040253           81 VFHLAT   86 (338)
Q Consensus        81 vi~~a~   86 (338)
                      ||-+..
T Consensus        64 vi~~vp   69 (301)
T 3cky_A           64 IFTSLP   69 (301)
T ss_dssp             EEECCS
T ss_pred             EEEECC
Confidence            997763

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.80  E-value=0.0012  Score=58.23  Aligned_cols=73  Identities=14%  Similarity=0.171  Sum_probs=54.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEeccc------------------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL------------------A   66 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl------------------~   66 (338)
                      ..+|+|+|+ |-+|..+++.+...|.+|++++|++...+....+        +.+++..+.                  .
T Consensus       184 ~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~l--------Ga~~~~l~~~~~~~~gya~~~~~~~~~~  254 (381)
T 3p2y_A          184 PASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSV--------GAQWLDLGIDAAGEGGYARELSEAERAQ  254 (381)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHT--------TCEECCCC-------------CHHHHHH
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--------CCeEEeccccccccccchhhhhHHHHhh
Confidence            579999985 9999999999999999999999998876666542        234433221                  0


Q ss_pred             CCCCchhhhCCccEEEEecc
Q 040253           67 EEGNFDEPIRGCTGVFHLAT   86 (338)
Q Consensus        67 d~~~~~~~~~~~d~vi~~a~   86 (338)
                      +.+.+.++++++|+||.++.
T Consensus       255 ~~~~l~e~l~~aDIVI~tv~  274 (381)
T 3p2y_A          255 QQQALEDAITKFDIVITTAL  274 (381)
T ss_dssp             HHHHHHHHHTTCSEEEECCC
T ss_pred             hHHHHHHHHhcCCEEEECCC
Confidence            12345677789999998764

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.80  E-value=0.00091  Score=61.08  Aligned_cols=120  Identities=8%  Similarity=0.115  Sum_probs=73.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-----CCeEEEEEcCCCcHHHHHHHhc-C-CCCCCcEEEEecccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-----GYAVRATVRDPDNKKKVKHLLE-L-PKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      .+||.|+||.+..|..++..|+.+     +.+|...+++++..+....+.. . +......++..     ..++.+++++
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~-----t~D~~eal~~  102 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-----TTDPEEAFTD  102 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-----ESCHHHHHSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEE-----ECCHHHHHcC
Confidence            469999998776688888888887     6789999998765443322211 0 00001112211     2345678899


Q ss_pred             ccEEEEecccCCCCCCCc-------------------cchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           78 CTGVFHLATPMDFESKDP-------------------ENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        78 ~d~vi~~a~~~~~~~~~~-------------------~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +|+||..++.........                   .-....-|+.....+++.+.+..+-..++.+|-.
T Consensus       103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNP  173 (472)
T 1u8x_X          103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNP  173 (472)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSC
T ss_pred             CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            999999997422100000                   0112456777888888888888745667766653

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.79  E-value=0.0056  Score=53.65  Aligned_cols=68  Identities=19%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+|.|+| .|-||+.+++.|...|.+|.+.+|++...+.....        ++..       .+++.++++++|+|+.
T Consensus       163 ~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--------g~~~-------~~~l~ell~~aDvV~l  226 (351)
T 3jtm_A          163 EGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKET--------GAKF-------VEDLNEMLPKCDVIVI  226 (351)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHH--------CCEE-------CSCHHHHGGGCSEEEE
T ss_pred             cCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhC--------CCeE-------cCCHHHHHhcCCEEEE
Confidence            368999998 89999999999999999999999987554433221        2221       2457788889999998


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus       227 ~~Pl  230 (351)
T 3jtm_A          227 NMPL  230 (351)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            7754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.78  E-value=0.0023  Score=56.59  Aligned_cols=74  Identities=18%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-CCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-RGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~d~vi   82 (338)
                      ...+|||+|+ |-+|..+++.+...|.+|+++++++++.+..+.+..     .  .+  .|..+..++.+.+ .++|+||
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~v--~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA-----D--HY--IATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC-----S--EE--EEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-----C--EE--EcCcCchHHHHHhhcCCCEEE
Confidence            3579999999 999999999988889999999998887766655421     1  11  2333331233333 4899999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      .+++.
T Consensus       249 d~~g~  253 (360)
T 1piw_A          249 VCASS  253 (360)
T ss_dssp             ECCSC
T ss_pred             ECCCC
Confidence            99974

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.78  E-value=0.0015  Score=58.27  Aligned_cols=69  Identities=16%  Similarity=0.241  Sum_probs=52.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ++++|+|+| +|.+|+.+++.+.+.|++|++++.++.....  ..        --..+..|..|.+.+.++.+++|+|..
T Consensus        11 ~~~~IlIlG-~G~lg~~la~aa~~lG~~viv~d~~~~~p~~--~~--------ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A           11 FGATIGIIG-GGQLGKMMAQSAQKMGYKVVVLDPSEDCPCR--YV--------AHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCTTCTTG--GG--------SSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCCCChhh--hh--------CCEEEECCCCCHHHHHHHHHhCCccee
Confidence            467999998 6889999999999999999999876543211  00        114667889898888888888998754

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.78  E-value=0.0018  Score=55.53  Aligned_cols=66  Identities=14%  Similarity=0.094  Sum_probs=47.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +||+|.|+| +|.+|+.+++.|.+.|++|.+.+ +++....+..        .+       +.-..++.++++++|+||-
T Consensus         2 ~~m~i~iiG-~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~--------~g-------~~~~~~~~~~~~~~D~vi~   64 (295)
T 1yb4_A            2 NAMKLGFIG-LGIMGSPMAINLARAGHQLHVTT-IGPVADELLS--------LG-------AVNVETARQVTEFADIIFI   64 (295)
T ss_dssp             --CEEEECC-CSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHT--------TT-------CBCCSSHHHHHHTCSEEEE
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH--------cC-------CcccCCHHHHHhcCCEEEE
Confidence            457999998 89999999999999999999887 6665544332        11       1223445666778999987


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        65 ~vp   67 (295)
T 1yb4_A           65 MVP   67 (295)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            763

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.78  E-value=0.0026  Score=54.73  Aligned_cols=70  Identities=14%  Similarity=0.203  Sum_probs=51.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|+|+| .|-+|+.+++.|...|.+|++.+|+++.......        .+++.+     +..++.++++++|+|+.
T Consensus       156 ~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~~~~-----~~~~l~~~l~~aDvVi~  221 (300)
T 2rir_A          156 HGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLARITE--------MGLVPF-----HTDELKEHVKDIDICIN  221 (300)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------TTCEEE-----EGGGHHHHSTTCSEEEE
T ss_pred             CCCEEEEEc-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--------CCCeEE-----chhhHHHHhhCCCEEEE
Confidence            468999999 5999999999999999999999997654333221        122322     12346677889999998


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus       222 ~~p~  225 (300)
T 2rir_A          222 TIPS  225 (300)
T ss_dssp             CCSS
T ss_pred             CCCh
Confidence            8763

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.75  E-value=0.0085  Score=51.02  Aligned_cols=63  Identities=16%  Similarity=0.056  Sum_probs=49.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|.|+| .|.||+.+++.|...|++|.+.+|++....             .       ....+++.++++++|+|+.
T Consensus       121 ~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-------------~-------~~~~~~l~ell~~aDiV~l  179 (290)
T 3gvx_A          121 YGKALGILG-YGGIGRRVAHLAKAFGMRVIAYTRSSVDQN-------------V-------DVISESPADLFRQSDFVLI  179 (290)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSCCCTT-------------C-------SEECSSHHHHHHHCSEEEE
T ss_pred             ecchheeec-cCchhHHHHHHHHhhCcEEEEEeccccccc-------------c-------ccccCChHHHhhccCeEEE
Confidence            368999998 899999999999999999999999765421             1       1123467788889999998


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus       180 ~~P~  183 (290)
T 3gvx_A          180 AIPL  183 (290)
T ss_dssp             CCCC
T ss_pred             Eeec
Confidence            8753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.75  E-value=0.0012  Score=60.59  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=49.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEE-EEe----cccCCCCCchhhhCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKVKHLLELPKASTHLT-LWK----ADLAEEGNFDEPIRG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~----~Dl~d~~~~~~~~~~   77 (338)
                      +|+|.|+| +|++|..++..|++.  |++|++++|+++..+.+..- ..+...++.. .+.    ..+.-..++.+++++
T Consensus         5 ~mkI~VIG-~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g-~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            5 IKKICCIG-AGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSP-TLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSS-SCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH
T ss_pred             ccEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCC-CCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc
Confidence            47999998 899999999999998  89999999987655443210 0000000000 000    111112334556678


Q ss_pred             ccEEEEecc
Q 040253           78 CTGVFHLAT   86 (338)
Q Consensus        78 ~d~vi~~a~   86 (338)
                      +|+||-+..
T Consensus        83 aDvViiaVp   91 (467)
T 2q3e_A           83 ADLVFISVN   91 (467)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEEcC
Confidence            999998875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.75  E-value=0.0017  Score=56.46  Aligned_cols=73  Identities=19%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ...+|+|+||+|-+|...++.+...|.+|+++++.. +.+..+.+.        +.. ..|..+.+.+.+.++++|+||.
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~~~~~~~lG--------a~~-~i~~~~~~~~~~~~~g~D~v~d  221 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-NHAFLKALG--------AEQ-CINYHEEDFLLAISTPVDAVID  221 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-HHHHHHHHT--------CSE-EEETTTSCHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-hHHHHHHcC--------CCE-EEeCCCcchhhhhccCCCEEEE
Confidence            367999999999999999999999999999887532 233333321        111 2244444436666689999999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.+
T Consensus       222 ~~g  224 (321)
T 3tqh_A          222 LVG  224 (321)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            987

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.74  E-value=0.0017  Score=59.73  Aligned_cols=41  Identities=12%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCCcHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPDNKKKV   45 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~   45 (338)
                      ++|+|.|+| .|++|..++..|.+.  |++|++++|+++..+.+
T Consensus         8 ~~mkI~VIG-~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l   50 (481)
T 2o3j_A            8 KVSKVVCVG-AGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEW   50 (481)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence            357999997 899999999999998  79999999987655444

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=96.73  E-value=0.0013  Score=61.32  Aligned_cols=70  Identities=20%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh-hhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE-PIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~   83 (338)
                      .++++|||| |-+|+.++..|++.|.+|++++|+.++...+.....     ..+  +  ++.|   +.+ ....+|++||
T Consensus       364 ~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~-----~~~--~--~~~d---l~~~~~~~~DilVN  430 (523)
T 2o7s_A          364 SKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIG-----GKA--L--SLTD---LDNYHPEDGMVLAN  430 (523)
T ss_dssp             --CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT-----C-C--E--ETTT---TTTC--CCSEEEEE
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----Cce--e--eHHH---hhhccccCceEEEE
Confidence            468999998 799999999999999999999998766555433221     111  1  1222   222 1235899999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +++.
T Consensus       431 ~agv  434 (523)
T 2o7s_A          431 TTSM  434 (523)
T ss_dssp             CSST
T ss_pred             CCCC
Confidence            9985

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.72  E-value=0.0033  Score=55.24  Aligned_cols=69  Identities=16%  Similarity=0.178  Sum_probs=51.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+.+|||+|+ |-+|...++.+...|.+|+++++++++.+..+.+..     .  ..+    .+.+.+.+   ++|+||.
T Consensus       176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~v~----~~~~~~~~---~~D~vid  240 (348)
T 3two_A          176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGV-----K--HFY----TDPKQCKE---ELDFIIS  240 (348)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTC-----S--EEE----SSGGGCCS---CEEEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCC-----C--eec----CCHHHHhc---CCCEEEE
Confidence            3679999997 999999999998899999999998888776655321     1  222    33333333   8999999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +++.
T Consensus       241 ~~g~  244 (348)
T 3two_A          241 TIPT  244 (348)
T ss_dssp             CCCS
T ss_pred             CCCc
Confidence            9884

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.72  E-value=0.0021  Score=56.34  Aligned_cols=72  Identities=19%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh----hhCCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE----PIRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~----~~~~~d   79 (338)
                      .+++|||+|| |-+|..+++.+...|.+|++++|++++.+..+.+        ++.. ..|..+.+ +.+    +..++|
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l--------Ga~~-~~d~~~~~-~~~~~~~~~~~~d  232 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL--------GADL-VVNPLKED-AAKFMKEKVGGVH  232 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCSE-EECTTTSC-HHHHHHHHHSSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHC--------CCCE-EecCCCcc-HHHHHHHHhCCCC
Confidence            3579999999 6699999999999999999999876665544432        1111 23555432 322    225799


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +||++++
T Consensus       233 ~vid~~g  239 (339)
T 1rjw_A          233 AAVVTAV  239 (339)
T ss_dssp             EEEESSC
T ss_pred             EEEECCC
Confidence            9999987

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.70  E-value=0.0026  Score=56.58  Aligned_cols=74  Identities=26%  Similarity=0.187  Sum_probs=54.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEeccc----------------CC-
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL----------------AE-   67 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl----------------~d-   67 (338)
                      ..+|+|+|+ |-+|..+++.+...|.+|+++++++...+....+        +..++..++                ++ 
T Consensus       190 ~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~--------G~~~~~~~~~~~~d~~~~~~ya~e~s~~  260 (405)
T 4dio_A          190 AAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVASL--------GAKFIAVEDEEFKAAETAGGYAKEMSGE  260 (405)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHT--------TCEECCCCC-----------------CH
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHc--------CCceeecccccccccccccchhhhcchh
Confidence            579999995 9999999999999999999999998876665543        223333221                11 


Q ss_pred             -----CCCchhhhCCccEEEEeccc
Q 040253           68 -----EGNFDEPIRGCTGVFHLATP   87 (338)
Q Consensus        68 -----~~~~~~~~~~~d~vi~~a~~   87 (338)
                           .+.+.++++++|+||.++..
T Consensus       261 ~~~~~~~~l~e~l~~aDVVI~tvli  285 (405)
T 4dio_A          261 YQVKQAALVAEHIAKQDIVITTALI  285 (405)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred             hhhhhHhHHHHHhcCCCEEEECCcC
Confidence                 12466677899999998753

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.69  E-value=0.0039  Score=55.43  Aligned_cols=74  Identities=18%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--CCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--RGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~v   81 (338)
                      .+.+|+|+||+|-+|..+++.+...|.+|++++ ++++.+..+.+        ++.. ..|..+.+...++.  .++|+|
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~l--------Ga~~-v~~~~~~~~~~~~~~~~g~D~v  252 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKL--------GADD-VIDYKSGSVEEQLKSLKPFDFI  252 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHT--------TCSE-EEETTSSCHHHHHHTSCCBSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHc--------CCCE-EEECCchHHHHHHhhcCCCCEE
Confidence            357999999999999999999999999998887 44444433332        1111 12444433222222  479999


Q ss_pred             EEeccc
Q 040253           82 FHLATP   87 (338)
Q Consensus        82 i~~a~~   87 (338)
                      |++++.
T Consensus       253 id~~g~  258 (375)
T 2vn8_A          253 LDNVGG  258 (375)
T ss_dssp             EESSCT
T ss_pred             EECCCC
Confidence            999983

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.69  E-value=0.0018  Score=57.00  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=51.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-----CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-----RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   78 (338)
                      ...+|||+||+|-+|...++.+...|.+|+++++++++.+..+.+..     .  ..+  |..+  ++.+.+     .++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa-----~--~vi--~~~~--~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA-----D--IVL--NHKE--SLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC-----S--EEE--CTTS--CHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC-----c--EEE--ECCc--cHHHHHHHhCCCCc
Confidence            46799999999999999999999999999999987766655554321     1  111  2222  232222     269


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||++++
T Consensus       219 Dvv~d~~g  226 (346)
T 3fbg_A          219 DYVFCTFN  226 (346)
T ss_dssp             EEEEESSC
T ss_pred             cEEEECCC
Confidence            99999987

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.68  E-value=0.0068  Score=45.95  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=29.2

Q ss_pred             CcEEEEeCCc---hhhHHHHHHHHHHCCCeEEEEEcC
Q 040253            5 AETVCVTGAS---GFIGSWLIMRLLERGYAVRATVRD   38 (338)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~   38 (338)
                      +++|.|.|++   |.+|..+++.|++.|++|+.++++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~   49 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPK   49 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCc
Confidence            5789999998   899999999999999987666544

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.67  E-value=0.0034  Score=53.81  Aligned_cols=69  Identities=14%  Similarity=0.216  Sum_probs=51.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|+|+| .|-+|+.+++.|...|.+|++.+|++........        .+++.+     +.+++.++++++|+|+.
T Consensus       154 ~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~--------~g~~~~-----~~~~l~~~l~~aDvVi~  219 (293)
T 3d4o_A          154 HGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLLARIAE--------MGMEPF-----HISKAAQELRDVDVCIN  219 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH--------TTSEEE-----EGGGHHHHTTTCSEEEE
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH--------CCCeec-----ChhhHHHHhcCCCEEEE
Confidence            468999998 7999999999999999999999997654333221        122322     12456677889999998


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       220 ~~p  222 (293)
T 3d4o_A          220 TIP  222 (293)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            874

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.66  E-value=0.0053  Score=51.60  Aligned_cols=65  Identities=14%  Similarity=0.083  Sum_probs=48.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .++++|+|+ |-.|+.++..|.+.|.+|++++|+.++...+..+        ++...  ++   +++    .++|+||++
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~--------~~~~~--~~---~~l----~~~DiVIna  179 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQRL--------GCDCF--ME---PPK----SAFDLIINA  179 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHH--------TCEEE--SS---CCS----SCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------CCeEe--cH---HHh----ccCCEEEEc
Confidence            579999995 9999999999999999999999999887766521        12222  22   222    278999998


Q ss_pred             ccc
Q 040253           85 ATP   87 (338)
Q Consensus        85 a~~   87 (338)
                      ...
T Consensus       180 Tp~  182 (269)
T 3phh_A          180 TSA  182 (269)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.65  E-value=0.0022  Score=57.67  Aligned_cols=71  Identities=21%  Similarity=0.189  Sum_probs=51.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+++|+|+|+ |-+|..+++.|...|. +|++++|++++...+....       ++..+     +.+++.+++.++|+||
T Consensus       166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~-------g~~~~-----~~~~l~~~l~~aDvVi  232 (404)
T 1gpj_A          166 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-------GGEAV-----RFDELVDHLARSDVVV  232 (404)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-------TCEEC-----CGGGHHHHHHTCSEEE
T ss_pred             cCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc-------CCcee-----cHHhHHHHhcCCCEEE
Confidence            4689999996 9999999999999997 8999999865543332211       12221     2234666778999999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      .+.+.
T Consensus       233 ~at~~  237 (404)
T 1gpj_A          233 SATAA  237 (404)
T ss_dssp             ECCSS
T ss_pred             EccCC
Confidence            98753

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.65  E-value=0.0025  Score=54.24  Aligned_cols=66  Identities=15%  Similarity=0.189  Sum_probs=49.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC---eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY---AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +|+|.|+| +|.+|+.+++.|.+.|+   +|.+.+|+++....+....       ++..       ..+..++++++|+|
T Consensus         3 ~~~I~iIG-~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~-------gi~~-------~~~~~~~~~~aDvV   67 (280)
T 3tri_A            3 TSNITFIG-GGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC-------GVHT-------TQDNRQGALNADVV   67 (280)
T ss_dssp             CSCEEEES-CSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT-------CCEE-------ESCHHHHHSSCSEE
T ss_pred             CCEEEEEc-ccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc-------CCEE-------eCChHHHHhcCCeE
Confidence            57899998 59999999999999998   9999999887665554311       2222       23445677889999


Q ss_pred             EEec
Q 040253           82 FHLA   85 (338)
Q Consensus        82 i~~a   85 (338)
                      |-+.
T Consensus        68 ilav   71 (280)
T 3tri_A           68 VLAV   71 (280)
T ss_dssp             EECS
T ss_pred             EEEe
Confidence            8765

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.64  E-value=0.0061  Score=51.46  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=50.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++++|+|+ |-+|+.++..|.+.|. +|++++|+.++...+......    .++..+.  +   +++..  .++|+||
T Consensus       119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~----~~~~~~~--~---~~l~~--~~~DivI  186 (272)
T 3pwz_A          119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH----SRLRISR--Y---EALEG--QSFDIVV  186 (272)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC----TTEEEEC--S---GGGTT--CCCSEEE
T ss_pred             cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc----CCeeEee--H---HHhcc--cCCCEEE
Confidence            4689999996 7899999999999995 999999988776665443321    1233332  2   22222  5789999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      ++...
T Consensus       187 naTp~  191 (272)
T 3pwz_A          187 NATSA  191 (272)
T ss_dssp             ECSSG
T ss_pred             ECCCC
Confidence            98753

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.64  E-value=0.0046  Score=53.86  Aligned_cols=71  Identities=21%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC--CCchhhh-CCccEEEE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE--GNFDEPI-RGCTGVFH   83 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~--~~~~~~~-~~~d~vi~   83 (338)
                      +|||+||+|-+|..+++.+...|.+|+++++++++.+..+.+..     .  ..  .|..+.  +.+.++. .++|+||+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa-----~--~~--i~~~~~~~~~~~~~~~~~~d~vid  222 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGA-----K--EV--LAREDVMAERIRPLDKQRWAAAVD  222 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTC-----S--EE--EECC---------CCSCCEEEEEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-----c--EE--EecCCcHHHHHHHhcCCcccEEEE
Confidence            79999999999999999999999999999998877766654321     1  11  233332  1122222 26899999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +++
T Consensus       223 ~~g  225 (328)
T 1xa0_A          223 PVG  225 (328)
T ss_dssp             CST
T ss_pred             CCc
Confidence            987

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.64  E-value=0.0039  Score=52.96  Aligned_cols=68  Identities=18%  Similarity=0.259  Sum_probs=47.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-CccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-GCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~v   81 (338)
                      ||+|.|+| .|.+|+.+++.|.+.|+  +|++.+|+++..+.....        ++.    + .-..++.++++ ++|+|
T Consensus         1 m~~I~iIG-~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~--------g~~----~-~~~~~~~~~~~~~aDvV   66 (281)
T 2g5c_A            1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL--------GII----D-EGTTSIAKVEDFSPDFV   66 (281)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT--------TSC----S-EEESCGGGGGGTCCSEE
T ss_pred             CcEEEEEe-cCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC--------CCc----c-cccCCHHHHhcCCCCEE
Confidence            46899998 89999999999999998  899988876554433221        111    0 00123445677 89999


Q ss_pred             EEecc
Q 040253           82 FHLAT   86 (338)
Q Consensus        82 i~~a~   86 (338)
                      |-+..
T Consensus        67 ilavp   71 (281)
T 2g5c_A           67 MLSSP   71 (281)
T ss_dssp             EECSC
T ss_pred             EEcCC
Confidence            97754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.63  E-value=0.0014  Score=54.60  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=32.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      ..|+|.|+| +|.+|+.+++.|.+.|++|++.+|+++.
T Consensus        18 ~~~kIgiIG-~G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           18 QGMKIAVLG-TGTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            468999997 9999999999999999999999998654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.62  E-value=0.007  Score=52.75  Aligned_cols=67  Identities=15%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+|.|+| .|.+|+.+++.|...|++|++.+|+.........        .++..       . ++.++++++|+|+-
T Consensus       154 ~g~~vgIIG-~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~--------~g~~~-------~-~l~e~l~~aDvVi~  216 (330)
T 2gcg_A          154 TQSTVGIIG-LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE--------FQAEF-------V-STPELAAQSDFIVV  216 (330)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHT--------TTCEE-------C-CHHHHHHHCSEEEE
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHh--------cCcee-------C-CHHHHHhhCCEEEE
Confidence            368999998 6999999999999999999999998765433221        12221       1 35567788999987


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus       217 ~vp~  220 (330)
T 2gcg_A          217 ACSL  220 (330)
T ss_dssp             CCCC
T ss_pred             eCCC
Confidence            7753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.62  E-value=0.01  Score=52.44  Aligned_cols=76  Identities=16%  Similarity=0.121  Sum_probs=52.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh----h--C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP----I--R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~----~--~   76 (338)
                      .+.+|||+|+ |-+|...++.+...|.+ |+++++++++.+..+.+ .     ..+..+..|-.+.+++.+.    .  .
T Consensus       179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~-----~~~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C-----PEVVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C-----TTCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c-----hhcccccccccchHHHHHHHHHHhCCC
Confidence            3578999998 99999999999889986 88888887766665554 2     2223333332233333332    2  2


Q ss_pred             CccEEEEecc
Q 040253           77 GCTGVFHLAT   86 (338)
Q Consensus        77 ~~d~vi~~a~   86 (338)
                      ++|+||.+++
T Consensus       252 g~Dvvid~~g  261 (363)
T 3m6i_A          252 EPAVALECTG  261 (363)
T ss_dssp             CCSEEEECSC
T ss_pred             CCCEEEECCC
Confidence            6999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	3e-47
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	1e-34
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	2e-31
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	3e-30
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	2e-27
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	5e-27
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	5e-27
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	2e-23
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	2e-22
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	4e-22
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	7e-21
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	2e-20
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	5e-20
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	3e-19
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	4e-19
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	6e-19
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	1e-16
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	5e-16
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-15
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	7e-15
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	1e-14
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	4e-13
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	3e-12
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	8e-11
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	2e-10
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	7e-09
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	8e-09
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	8e-07
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	2e-06
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	3e-06
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	6e-06
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	2e-05
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	2e-05
d1snya_	248	c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly	2e-05
d1xg5a_	257	c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41	2e-05
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	4e-05
d1xq1a_	259	c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara	4e-05
d1jtva_	285	c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi	5e-05
d1yo6a1	250	c.2.1.2 (A:1-250) Putative carbonyl reductase snif	5e-05
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	6e-05
d2gdza1	254	c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog	6e-05
d2rhca1	257	c.2.1.2 (A:5-261) beta-keto acyl carrier protein r	7e-05
d1dhra_	236	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	8e-05
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	1e-04
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	1e-04
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	1e-04
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	1e-04
d1zk4a1	251	c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase	2e-04
d1g0oa_	272	c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase	2e-04
d1geea_	261	c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat	2e-04
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	3e-04
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	3e-04
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	4e-04
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	5e-04
d1sbya1	254	c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase	5e-04
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	6e-04
d2c07a1	251	c.2.1.2 (A:54-304) beta-keto acyl carrier protein	0.001
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	0.001
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	0.001
d1oaaa_	259	c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus	0.001
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	0.001
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	0.002
d1ae1a_	258	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	0.002
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.003
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	0.003
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	0.003
d1h5qa_	260	c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga	0.003

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score =  160 bits (405), Expect = 3e-47
 Identities = 79/333 (23%), Positives = 132/333 (39%), Gaps = 19/333 (5%)

Query: 6   ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADL 65
             V VTGA+GF+ S ++ +LLE GY VR T R       ++   +        T    D+
Sbjct: 12  SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDM 71

Query: 66  AEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
            ++G +DE I+G  GV H+A+ + F +K  E   + P I G ++ +RA     +V+R V 
Sbjct: 72  LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEV--VTPAIGGTLNALRAAAATPSVKRFVL 129

Query: 126 TSSAGTLDVEEHRKP---------VYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWK 176
           TSS  +  + +               +    +        + + W+Y  SKT AE AAWK
Sbjct: 130 TSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWK 189

Query: 177 FAEENNIDFISII--PSLVVGPFLTSSMPPSLITALSPITRNEAHYPII---KQGQFVHL 231
           F +EN   F      P+  +G            +       N    P +       +V  
Sbjct: 190 FMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYVSA 249

Query: 232 DDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNM 290
            D+   H+     P  + R    ++       +    R+ YP    P +F D  +++   
Sbjct: 250 VDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKF 309

Query: 291 --LFSSKKLTDLGFKFKYSLDDMFTGAVDTCRA 321
               S + L  LG     S+++     V +  A
Sbjct: 310 DTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 342

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 1e-34
 Identities = 46/318 (14%), Positives = 103/318 (32%), Gaps = 27/318 (8%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLA 66
           + +TG +GF+GS L  +L+  G+ V          K+ V+H +              +L 
Sbjct: 4   ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHE---------NFELI 54

Query: 67  EEGNFDEPIRGCTGVFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
                +        ++HLA+P           + ++    G ++++   K      RL+ 
Sbjct: 55  NHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLL 112

Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
            S++      +       E  W  ++ +         Y   K +AE   + + ++  ++ 
Sbjct: 113 ASTSEV--YGDPEVHPQSEDYWGHVNPIGPR----ACYDEGKRVAETMCYAYMKQEGVEV 166

Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ----FVHLDDLCSAHIFL 241
                    GP +  +    +   +    + E    +   G     F ++ DL +  + L
Sbjct: 167 RVARIFNTFGPRMHMNDGRVVSNFILQALQGEP-LTVYGSGSQTRAFQYVSDLVNGLVAL 225

Query: 242 FEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFED--VDENMKNMLFSSKKLTD 299
                +       +     +     L +         +F     D+  K      K    
Sbjct: 226 MNSNVS-SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLM 284

Query: 300 LGFKFKYSLDDMFTGAVD 317
           LG++    L++    A+ 
Sbjct: 285 LGWEPVVPLEEGLNKAIH 302

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score =  118 bits (296), Expect = 2e-31
 Identities = 56/323 (17%), Positives = 99/323 (30%), Gaps = 29/323 (8%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRA----TVRDPDNKKKVKHLLELPKASTHLTLWKA 63
           + VTG +GFIGS  + +LL   Y         V D       +  L    A   L     
Sbjct: 3   LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62

Query: 64  DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPE-NEVIRPTINGMVSIMRACKNAKTVRR 122
           D+ + G     +RG   + H A     +      +      + G  ++++   +A    R
Sbjct: 63  DIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGV-GR 121

Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENN 182
           +V  S+             + E+S  + +           Y  SK  ++  A  +     
Sbjct: 122 VVHVSTNQV--YGSIDSGSWTESSPLEPN---------SPYAASKAGSDLVARAYHRTYG 170

Query: 183 IDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHYPIIKQGQ----FVHLDDLCSA 237
           +D          GP+       P  +T L     +    P+   G     +VH DD C  
Sbjct: 171 LDVRITRCCNNYGPYQHPEKLIPLFVTNL----LDGGTLPLYGDGANVREWVHTDDHCRG 226

Query: 238 HIFLFEHPNAKGRYICSSHPATILE--LAKFLREKYPEFNVPTEFEDVDENMKNMLFSSK 295
              +     A   Y                 L     +++   +  D   +         
Sbjct: 227 IALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGG 286

Query: 296 KL-TDLGFKFKYSLDDMFTGAVD 317
           K+  +LG++ + S  D     V 
Sbjct: 287 KIERELGYRPQVSFADGLARTVR 309

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score =  116 bits (290), Expect = 3e-30
 Identities = 49/336 (14%), Positives = 105/336 (31%), Gaps = 32/336 (9%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + +TG +GFIGS ++  +++        +        ++ L ++ + S       AD+ +
Sbjct: 3   ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISE-SNRYNFEHADICD 61

Query: 68  EGNFDEPIRG--CTGVFHLA--TPMDFESKDPENEVIRPTINGMVSIMRACK-------- 115
                          V HLA  + +D     P    I   I G  +++   +        
Sbjct: 62  SAEITRIFEQYQPDAVMHLAAESHVDRSITGPA-AFIETNIVGTYALLEVARKYWSALGE 120

Query: 116 NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAW 175
           + K   R    S+        H     + +    L    +       Y  SK  ++    
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHP-DEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179

Query: 176 KFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ----FVHL 231
            +     +  I    S   GP+     P  LI  +          PI  +G     ++++
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPY---HFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYV 236

Query: 232 DDLCSAHIFLFEHPNAKGRY-ICSSHPATILELAKFLREKY---------PEFNVPTEFE 281
           +D   A   +     A   Y I   +    L++   + +               +    +
Sbjct: 237 EDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVAD 296

Query: 282 DVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
               + +  + + K   +LG+K   + +      V+
Sbjct: 297 RPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVE 332

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (269), Expect = 2e-27
 Identities = 53/350 (15%), Positives = 99/350 (28%), Gaps = 56/350 (16%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELP-KASTHLTLWKA 63
              +TG +G  GS+L   LLE+GY V    R     N ++V H+ + P   +    L   
Sbjct: 3   VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62

Query: 64  DLAEEGNFDEPIRGC---TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA--K 118
           DL++  N    +R           A      S +           G + ++ A +    +
Sbjct: 63  DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122

Query: 119 TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFA 178
              R    S++        ++    ET+                Y V+K  A      + 
Sbjct: 123 KKTRFYQASTSELYG--LVQEIPQKETTPFY---------PRSPYAVAKLYAYWITVNYR 171

Query: 179 EENNIDFISIIPSLVVGPFLTSSMPPSLI-TALSPITRNEAHYPIIKQGQ----FVHLDD 233
           E   +   + I      P    +     I  A++ I +       +        + H  D
Sbjct: 172 ESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKD 231

Query: 234 LCSAHIFLFEHPNAKGRYICSSHPATILELA-------------------------KFLR 268
                  + +    +   I +    ++ +                               
Sbjct: 232 YVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTG 291

Query: 269 EKYPEFNVPTEFEDVDENM------KNMLFSSKKL-TDLGFKFKYSLDDM 311
              P          VD         + +L    K    LG+K + +L +M
Sbjct: 292 HDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREM 341

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  106 bits (266), Expect = 5e-27
 Identities = 58/318 (18%), Positives = 101/318 (31%), Gaps = 21/318 (6%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + +TGA GFI S +  RL   G+ V A+    D KK      ++     HL     DL  
Sbjct: 18  ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTEDMFCDEFHL----VDLRV 69

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT-VRRLVFT 126
             N  +   G   VF+LA  M        N  +    N M+S           ++R  + 
Sbjct: 70  MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA 129

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           SSA      +  +        SD             + + K   E+    + ++  I+  
Sbjct: 130 SSACIYPEFKQLETTNVSLKESDAWPAEPQ----DAFGLEKLATEELCKHYNKDFGIECR 185

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG------QFVHLDDLCSAHIF 240
                 + GPF T         A        +       G       F  +D+     + 
Sbjct: 186 IGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 245

Query: 241 LFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKL-TD 299
           L +    +   I S    ++ E+A+ +   + E  +P       E ++     +  +   
Sbjct: 246 LTKSDFREPVNIGSDEMVSMNEMAEMV-LSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEK 304

Query: 300 LGFKFKYSLDDMFTGAVD 317
           LG+     L +       
Sbjct: 305 LGWAPNMRLKEGLRITYF 322

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  106 bits (264), Expect = 5e-27
 Identities = 48/320 (15%), Positives = 94/320 (29%), Gaps = 30/320 (9%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDP--DNKKKVKHLLELPKASTHLTLWKAD 64
           +  VTG +G  G++L   LLE+GY V   V     D + +++ L         +     D
Sbjct: 2   SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGD----IQYEDGD 57

Query: 65  LAEEGNFDEPIRGCT---GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR 121
           +A+  +    +            A      S +           G+  ++ A +      
Sbjct: 58  MADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPET 117

Query: 122 RLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN 181
           R    S++        +    DE +                Y V+K         + E  
Sbjct: 118 RFYQASTSEM--FGLIQAERQDENTPFYPR---------SPYGVAKLYGHWITVNYRESF 166

Query: 182 NIDFISIIPSLVVGPFLTSSMPPSLIT-ALSPITRNEAHYPIIKQGQ----FVHLDDLCS 236
            +   S I      P          +T A++ I   +     +        +    D   
Sbjct: 167 GLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVE 226

Query: 237 AHIFLFEHPNAKGRYICSSHPATI-----LELAKFLREKYPEFNVPTEFEDVDENMKNML 291
           A   + +   A    + +    T+     +       +      +   F    E    + 
Sbjct: 227 AMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLG 286

Query: 292 FSSKKLTDLGFKFKYSLDDM 311
             +K    LG+K + SLD++
Sbjct: 287 NPAKAQRVLGWKPRTSLDEL 306

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 96.5 bits (239), Expect = 2e-23
 Identities = 44/334 (13%), Positives = 99/334 (29%), Gaps = 53/334 (15%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V + G  G +GS +  +L +RG            + ++                  +L +
Sbjct: 5   VFIAGHRGMVGSAIRRQLEQRGDVELVL----RTRDEL------------------NLLD 42

Query: 68  EGNFDEPIRG--CTGVFHLATPMD--FESKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
                +         V+  A  +     +     + I   +    +I+ A      V +L
Sbjct: 43  SRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VNKL 101

Query: 124 VFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
           +F  S+      +  K    E+         +++ T   Y ++K    +    +  +   
Sbjct: 102 LFLGSSCIYP--KLAKQPMAESEL----LQGTLEPTNEPYAIAKIAGIKLCESYNRQYGR 155

Query: 184 DFISIIPSLVVGPF----LTSSMPPSLITALSPITRNEAHYPIIKQG------------- 226
           D+ S++P+ + GP      ++S     +         +    ++  G             
Sbjct: 156 DYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDD 215

Query: 227 ---QFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDV 283
                +H+ +L          P      + +    TI ELA+ + +              
Sbjct: 216 MAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK 275

Query: 284 DENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
            +     L    +L  LG+  + SL+        
Sbjct: 276 PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQ 309

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 2e-22
 Identities = 51/338 (15%), Positives = 100/338 (29%), Gaps = 47/338 (13%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELPKASTH--LTLWKADL 65
           +TG +G  GS+L   LLE+GY V   VR     N  +++HL + P+A     + L   DL
Sbjct: 6   ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDL 65

Query: 66  AEEGNFDEPIRG---CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAK--TV 120
            +     + I            A      S D           G + ++ A K       
Sbjct: 66  TDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINS 125

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
            +    S++           +Y +                  Y  +K  A      F E 
Sbjct: 126 VKFYQASTSE----------LYGKVQEIPQKETTPFYPR-SPYGAAKLYAYWIVVNFREA 174

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSL-ITALSPITRNEAHYPIIKQGQ----FVHLDDLC 235
            N+  ++ I      P   ++        +++ I   +     +        + H  D  
Sbjct: 175 YNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYV 234

Query: 236 SAHIFLFEHPNAKGRYICSSHPATI----------------------LELAKFLREKYPE 273
            A   + ++   +   I +    ++                       E+ +        
Sbjct: 235 EAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVH 294

Query: 274 FNVPTEFEDVDENMKNMLFSSKKLTDLGFKFKYSLDDM 311
             V  ++    E        +K    L +K + + D++
Sbjct: 295 VTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDEL 332

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 93.5 bits (231), Expect = 4e-22
 Identities = 46/317 (14%), Positives = 93/317 (29%), Gaps = 8/317 (2%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + VTG +GFIGS  +  +      V  TV D       K  LE       + L   D+A
Sbjct: 4   NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGD-RVELVVGDIA 62

Query: 67  EEGNFDEPIRGCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF 125
           +    D+       + H A       S +  +  I     G  +++ A +        V 
Sbjct: 63  DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 122

Query: 126 TSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDF 185
           T             P + E          +   +   Y  +K  ++     +     +  
Sbjct: 123 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPS-SPYSSTKAASDLIVKAWVRSFGVKA 181

Query: 186 ISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG-QFVHLDDLCSAHIFLFEH 244
                S   GP+                      Y   K    ++H +D  +    +   
Sbjct: 182 TISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTK 241

Query: 245 PNAKG-RYICSSHPATILELAKFLREKYPEFNVPTEFED--VDENMKNMLFSSKKLTDLG 301
                   I +       E+ + + EK  +     +        +++  + +SK   +LG
Sbjct: 242 GRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELG 301

Query: 302 FKFKYS-LDDMFTGAVD 317
           +  +++   +     + 
Sbjct: 302 WTPQFTDFSEGLEETIQ 318

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.7 bits (221), Expect = 7e-21
 Identities = 49/323 (15%), Positives = 91/323 (28%), Gaps = 27/323 (8%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD--NKKKVKHLLELPKASTH--LTLWK 62
              +TG +G  GS+L   LL +GY V   +R     N +++ H+   P       + L  
Sbjct: 3   IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62

Query: 63  ADLAEEGNFDEPIRGCTGVFH----LATPMDFESKDPENEVIRPTINGMVSIMRACKNAK 118
           ADL +  +    I              + +    + P+          +  +     +  
Sbjct: 63  ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 122

Query: 119 TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFA 178
              R V    AG+ ++     P   ET+                Y  SK  A      + 
Sbjct: 123 DSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPR---------SPYAASKCAAHWYTVNYR 173

Query: 179 EENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLC--- 235
           E   +   + I      P    +     IT      +      +         D      
Sbjct: 174 EAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGD 233

Query: 236 -SAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENM-----KN 289
               ++L         Y+ ++     +E    +   Y   N     E            N
Sbjct: 234 YVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDN 293

Query: 290 MLFSSKKL-TDLGFKFKYSLDDM 311
           +   + K    LG+K +   + +
Sbjct: 294 LQGDASKAKEVLGWKPQVGFEKL 316

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 87.9 bits (216), Expect = 2e-20
 Identities = 42/328 (12%), Positives = 95/328 (28%), Gaps = 45/328 (13%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V + G +G+IG  ++   +  G+      R        K  + L        L +A L +
Sbjct: 6   VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDD 65

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
                + ++    V                      I   + ++ A K A  ++R + + 
Sbjct: 66  HQRLVDALKQVDVVISALAGGVL----------SHHILEQLKLVEAIKEAGNIKRFLPSE 115

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFIS 187
                D+ EH       T                              +  E  +I +  
Sbjct: 116 FGMDPDIMEHALQPGSITFIDKRK----------------------VRRAIEAASIPYTY 153

Query: 188 IIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA 247
           +  ++  G F   S+       + P  +   +     +G +V  DD+ +  I   + P  
Sbjct: 154 VSSNMFAGYFAG-SLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT 212

Query: 248 KGR---YICSSHPATILELAKFLRE----KYPEFNVPTEF--EDVDENMKNMLFSSKKLT 298
             +        +  +  E+ +           +  + ++    D+ +           L 
Sbjct: 213 LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDKSYEEKIVRCHLY 272

Query: 299 DLGFKFKYSLDDMFTGAVDTCRAKGLLP 326
            + F+      ++   A++   A  L P
Sbjct: 273 QIFFRGDLYNFEIGPNAIE---ATKLYP 297

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 87.3 bits (215), Expect = 5e-20
 Identities = 58/330 (17%), Positives = 107/330 (32%), Gaps = 32/330 (9%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVR----DPDNKKKVKHLLELPKASTHLTLWK 62
              +TG +GFIGS L+  LL+    V            N  +V+ L+   + S +    +
Sbjct: 18  VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS-NFKFIQ 76

Query: 63  ADLAEEGNFDEPIRGCTGVFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVR 121
            D+    + +    G   V H A       S +         I+G ++++ A ++AK   
Sbjct: 77  GDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS 136

Query: 122 RLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN 181
                SS+      +H      E +                Y V+K + E  A  F+   
Sbjct: 137 FTYAASSS---TYGDHPGLPKVEDTIGK---------PLSPYAVTKYVNELYADVFSRCY 184

Query: 182 NIDFISIIPSLVVGPFLTSSMPPS-LITALSPITRNEAHYPIIKQG----QFVHLDDLCS 236
               I +    V G     +   + +I   +          I   G     F ++++   
Sbjct: 185 GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQ 244

Query: 237 AHIFLFEHPNAKGRYI---CSSHPATILELAKFLREKYPEFNVPTEFEDV------DENM 287
           A++            +         ++ +L   LR+   E  V    E V       +  
Sbjct: 245 ANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVR 304

Query: 288 KNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
            ++   SK    LG+  KY +      A+ 
Sbjct: 305 HSLADISKAAKLLGYAPKYDVSAGVALAMP 334

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 85.0 bits (209), Expect = 3e-19
 Identities = 63/338 (18%), Positives = 113/338 (33%), Gaps = 41/338 (12%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           V VTG SG+IGS   ++LL+ G+ V       ++K+ V  ++E      H T  + D+  
Sbjct: 3   VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRN 61

Query: 68  EGNFDEPIR--GCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           E    E +       V H A      ES     E     +NG + ++ A + A  V+  +
Sbjct: 62  EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNFI 120

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
           F+S             VY +                  Y  SK + EQ      +     
Sbjct: 121 FSS----------SATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDW 170

Query: 185 FISII-PSLVVGP-----------FLTSSMPPSLITAL----SPITRNEAHYPIIKQGQ- 227
            I+++     VG             + +++ P +          +      YP       
Sbjct: 171 SIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGV 230

Query: 228 --FVHLDDLCSAHIFLFEHPNAKGRY----ICSSHPATILELAKFLREKYPEFNVPTEFE 281
             ++H+ DL   H+   E    K       + +    ++L++      K     V   F 
Sbjct: 231 RDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAF-SKACGKPVNYHFA 289

Query: 282 D--VDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
                +       +SK   +L ++   +LD+M      
Sbjct: 290 PRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWH 327

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 84.8 bits (208), Expect = 4e-19
 Identities = 57/334 (17%), Positives = 111/334 (33%), Gaps = 27/334 (8%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + +TG  GF+GS L    L +G  +   V D  ++K     L    +  +      D+  
Sbjct: 3   LLITGGCGFLGSNLASFALSQGIDL--IVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60

Query: 68  EGNFDEPIRGC--TGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
           + +    I        FHLA  +    S D         + G ++++ A +   +   ++
Sbjct: 61  KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG-----WMYFVSKTLAEQAAWKFAE 179
           ++S+       E  K    ET ++ +D       +        Y  SK  A+Q    +A 
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYAR 180

Query: 180 ENNIDFISIIPSLVVG---PFLTSSMPPSLITALSPITRNEAHYPIIKQG------QFVH 230
              ++ +    S + G                  +   +N  + P    G        +H
Sbjct: 181 IFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLH 240

Query: 231 LDDLCSAHIFLFEHPNAKG-----RYICSSHPATILELAKFLREKYPEFNVPTEFEDVDE 285
            +D+ S +     + +              +  ++LEL K L E Y   ++      V E
Sbjct: 241 AEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLL-EDYCNIDMRFTNLPVRE 299

Query: 286 NMKNMLF--SSKKLTDLGFKFKYSLDDMFTGAVD 317
           + + +      K    + +  K S  D      D
Sbjct: 300 SDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYD 333

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 84.3 bits (207), Expect = 6e-19
 Identities = 46/329 (13%), Positives = 92/329 (27%), Gaps = 49/329 (14%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           T+ V GA+G  G+ LI      G+ VRA V         + L  +P      TL++  L 
Sbjct: 5   TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLK-GLIAEELQAIPNV----TLFQGPLL 59

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
                 + +     +  + T                 I     +  A K A T++  +++
Sbjct: 60  NNVPLMDTLFEGAHLAFINTTSQAG----------DEIAIGKDLADAAKRAGTIQHYIYS 109

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           S                   ++  ++VR + +     +                    + 
Sbjct: 110 SMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAG-----------------IYN 152

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
           +   SL    F    MP       +P   +     +          D+  A + +F+   
Sbjct: 153 NNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWL------DAEHDVGPALLQIFKDGP 206

Query: 247 AKG---RYICSSHPATILELAKFLRE----KYPEFNVPTEF--EDVDENMKNMLFSSKKL 297
            K    R   +    + +++          +     VP      ++    +  L + + +
Sbjct: 207 QKWNGHRIALTFETLSPVQVCAAFSRALNRRVTYVQVPKVEIKVNIPVGYREQLEAIEVV 266

Query: 298 TDLGFKFKYSLDDMFTGAVDTCRAKGLLP 326
              G                    KGL P
Sbjct: 267 --FGEHKAPYFPLPEFSRPAAGSPKGLGP 293

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.4 bits (189), Expect = 1e-16
 Identities = 52/338 (15%), Positives = 102/338 (30%), Gaps = 31/338 (9%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADL 65
            V VTG +G+IGS  ++ L+E GY               V  L  L K   H+  ++ DL
Sbjct: 3   IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKH--HIPFYEVDL 60

Query: 66  AEEGNFDEPIR--GCTGVFHLA-TPMDFESKDPENEVIRPTINGMVSIMRACKN--AKTV 120
            +    ++  +      V H A      ES           I G V ++   +       
Sbjct: 61  CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 120

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE 180
                 +  G      +  P+ +E      +     K            +++ +WKFA  
Sbjct: 121 VFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAIL 180

Query: 181 NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII-----KQGQFVHLDDLC 235
              + I   PS ++G      +P +L+  ++ +         I            + D  
Sbjct: 181 RYFNPIGAHPSGLIGED-PLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYI 239

Query: 236 SAHIFLFEHPNAKGRY--------------ICSSHPATILELAKFLREKYPEFNVPTEFE 281
                   H  A                  + S   +T+ E+      K    ++P +  
Sbjct: 240 HVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAF-CKASGIDLPYKVT 298

Query: 282 D--VDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
                + +       +   +L ++ +  ++D       
Sbjct: 299 GRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWK 336

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 5e-16
 Identities = 38/254 (14%), Positives = 70/254 (27%), Gaps = 59/254 (23%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + + GA+G  G   + + ++ GY V   VRD                     +   D+ 
Sbjct: 5   KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGP--------RPAHVVVGDVL 56

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +  + D+ + G   V  L    +  S             G  +I+ A K    V ++V  
Sbjct: 57  QAADVDKTVAGQDAVIVLLGTRNDLSPTTVM------SEGARNIVAAMKAHG-VDKVVAC 109

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           +SA  L       P     +   +   + ++ +G  Y                       
Sbjct: 110 TSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVA--------------------- 148

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQG----QFVHLDDLCSAHIFLF 242
            ++P  +    LT                    Y +   G    + +   DL    +   
Sbjct: 149 -VMPPHIGDQPLTG------------------AYTVTLDGRGPSRVISKHDLGHFMLRCL 189

Query: 243 EHPNAKGRYICSSH 256
                 G     SH
Sbjct: 190 TTDEYDGHSTYPSH 203

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 1e-15
 Identities = 52/348 (14%), Positives = 104/348 (29%), Gaps = 49/348 (14%)

Query: 5   AETVCVTGASGFIGSWLIMRLLERGYAV-------RATVRDPDNKKKVKHLLELPKASTH 57
           AE V VTG +G+IGS  ++ LLE GY          A        + ++ + EL   S  
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRS-- 59

Query: 58  LTLWKADLAEEGNFDEPIRGCTGVFHL---ATPMDFESKDPENEVIRPTINGMVSIMRAC 114
           +   + D+ ++G      +  + +  +         ES     +  R  + G + ++   
Sbjct: 60  VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 119

Query: 115 KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAA 174
           K       +                 VY    +  LD           Y  SK   E+  
Sbjct: 120 KAHGVKNLVFS-----------SSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMI 168

Query: 175 WKFAEENNIDFISII-PSLVVGP-----------FLTSSMPPSLITALS----PITRNEA 218
               + +      ++      G             + +++ P +          +     
Sbjct: 169 RDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGN 228

Query: 219 HYPIIKQGQ---FVHLDDLCSAHIFLFEHPNAKGRY----ICSSHPATILELAKFLREKY 271
            Y          ++H+ DL   HI        +       + +    ++L++ + + EK 
Sbjct: 229 DYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAM-EKA 287

Query: 272 PEFNVPTEFED--VDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVD 317
               +P +       +        S    +LG+     LD M      
Sbjct: 288 SGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWR 335

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 71.0 bits (172), Expect = 7e-15
 Identities = 29/270 (10%), Positives = 62/270 (22%), Gaps = 34/270 (12%)

Query: 7   TVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
           TV VTGASG  G  +  +L E    +  +  VR    K+K+    ++             
Sbjct: 5   TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSI-- 62

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
                N          +   A P      DP        I                 ++ 
Sbjct: 63  -----NPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQID 117

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNID 184
                           V        +           +   +  + ++ A ++  ++   
Sbjct: 118 AA----------KVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTP 167

Query: 185 FISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH 244
           +  I    ++               +  +   +    +    + V   D+    I     
Sbjct: 168 YTIIRAGGLLDKEGG----------VRELLVGKDDELLQTDTKTVPRADVAEVCIQALLF 217

Query: 245 PNAKGRYI-----CSSHPATILELAKFLRE 269
             AK +                +      +
Sbjct: 218 EEAKNKAFDLGSKPEGTSTPTKDFKALFSQ 247

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 71.0 bits (172), Expect = 1e-14
 Identities = 42/280 (15%), Positives = 82/280 (29%), Gaps = 47/280 (16%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPK-ASTHLTLWKADLA 66
           + + GA+G+IG  +    L+ G+     VR+       +    L    ++   +    + 
Sbjct: 6   ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 65

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
           +  +  E ++    V      +  ES+                I++A K   TV+R  F 
Sbjct: 66  DHASLVEAVKNVDVVISTVGSLQIESQVN--------------IIKAIKEVGTVKR-FFP 110

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
           S  G      H                R+++  G  Y                       
Sbjct: 111 SEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTY--------------------- 149

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
            +  +   G FL S           P  +         +  FV  +D+ +  I   + P 
Sbjct: 150 -VSSNCFAGYFLRSLAQA--GLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPR 206

Query: 247 AKGR---YICSSHPATILELAKFLRE----KYPEFNVPTE 279
              +       ++  ++ EL     +       +  VP E
Sbjct: 207 TLNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEE 246

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 67.2 bits (162), Expect = 4e-13
 Identities = 49/320 (15%), Positives = 93/320 (29%), Gaps = 20/320 (6%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V VTG +GF G WL + L   G  V+              L E  + +  +     D+ 
Sbjct: 10  RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTV---PSLFETARVADGMQSEIGDIR 66

Query: 67  EEGN---FDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
           ++          +        A P+   S     E     + G V ++ A ++   V+ +
Sbjct: 67  DQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAV 126

Query: 124 VFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNI 183
           V  +S    D +E      +  +    D   S          S             ++  
Sbjct: 127 VNITSDKCYDNKEWIWGYRENEAMGGYD-PYSNSKGCAELVTSSYRNSFFNPANYGQHGT 185

Query: 184 DFISIIPSLVVGP--FLTSSMPPSLITALS----------PITRNEAHYPIIKQGQFVHL 231
              ++    V+G   +    + P ++ A               R   H      G  +  
Sbjct: 186 AVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLA 245

Query: 232 DDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNML 291
             L +      E  N       ++    I+E       +   + +        E     L
Sbjct: 246 QKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHP-HEAHYLKL 304

Query: 292 FSSKKLTDLGFKFKYSLDDM 311
             SK    LG+  +++L+  
Sbjct: 305 DCSKAKMQLGWHPRWNLNTT 324

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 64.6 bits (155), Expect = 3e-12
 Identities = 41/362 (11%), Positives = 90/362 (24%), Gaps = 49/362 (13%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRA----TVRDPDNKKKVKHLLELPKASTHLTLW-- 61
           V V G  G+ G    + L ++ Y V        R  D++  ++ L  +      ++ W  
Sbjct: 4   VMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA 63

Query: 62  ---------KADLAEEGNFDEPIR------GCTGVFHLATPMDFESKDPENEVIRPTING 106
                      D+ +     E  +              + P     +          + G
Sbjct: 64  LTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIG 123

Query: 107 MVSIMRACKNAKTVRRLVFTSSAG-----------------TLDVEEHRKPVYDETSWSD 149
            ++++ A K       LV   + G                      +        +S+  
Sbjct: 124 TLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYH 183

Query: 150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITA 209
           L  V       +        A             D   +   L       +    +L   
Sbjct: 184 LSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRF 243

Query: 210 LSPITRNEA---HYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYIC---SSHPATILEL 263
                       +    +   ++ + D          +P   G +      +   ++ EL
Sbjct: 244 CVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNEL 303

Query: 264 AKFLREKYPEFNVPTEFEDVDENMK-----NMLFSSKKLTDLGFKFKYSLDDMFTGAVDT 318
           A  + +   +  +  +   V                 KL +LG +  Y  D +    ++ 
Sbjct: 304 ASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNF 363

Query: 319 CR 320
             
Sbjct: 364 AV 365

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 60.2 bits (144), Expect = 8e-11
 Identities = 55/363 (15%), Positives = 104/363 (28%), Gaps = 62/363 (17%)

Query: 8   VCVTGASGFIGSWLIMRLL-ERGYAVR---------------ATVRDPDNKKKVKHLLEL 51
           V V G +G+IGS  +  LL +  ++V                 T  +   K +     + 
Sbjct: 5   VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64

Query: 52  PKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIM 111
           P A  +  L   D+  E +F   +    G       M       E+            + 
Sbjct: 65  PWADRYAALEVGDVRNE-DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123

Query: 112 RACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAE 171
                   +          +         +   ++ ++   + + K     Y  SK +AE
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAE 183

Query: 172 QAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPS--------------LITALSPITRNE 217
           +     AE   I  I +      G      +                 +++ ++P  R  
Sbjct: 184 RMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLT 243

Query: 218 AHYPIIKQGQ------------------FVHLDDLCSAHIFLFEHPNAKGRY-------- 251
            H       +                  +VH+ DL SAHI   ++    G          
Sbjct: 244 IHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSV 303

Query: 252 --ICSSHPATILELAKFLREKYPEFNVPTEFED--VDENMKNMLFSSKKLTDLGFKFKYS 307
             + +S   ++ E+ +    K     +P         +    +  S K    LG+K KY 
Sbjct: 304 FNLGTSRGYSVREVIEVA-RKTTGHPIPVRECGRREGDPAYLVAASDKAREVLGWKPKYD 362

Query: 308 LDD 310
             +
Sbjct: 363 TLE 365

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 57.5 bits (137), Expect = 2e-10
 Identities = 31/259 (11%), Positives = 56/259 (21%), Gaps = 52/259 (20%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V + GA+G  G  L+ R+L      +          +   L         L        
Sbjct: 4   RVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQ----- 58

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
                                                 +   +        K        
Sbjct: 59  -----------------------------------LDGSIDTAFCCLGTTIKEAGSEEAF 83

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
            +          K   +  +   L             F ++   E       +      I
Sbjct: 84  RAVDFDLPLAVGKRALEMGARHYLVVSALGADAKSSIFYNRVKGELEQALQEQGWPQLTI 143

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
              PSL+ GP     +   L   ++ I        +  +   +   DL  A   L     
Sbjct: 144 -ARPSLLFGPREEFRLAEILAAPIARI--------LPGKYHGIEACDLARALWRLALEEG 194

Query: 247 AKGRYICSSHPATILELAK 265
              R++ S     + +L K
Sbjct: 195 KGVRFVESDE---LRKLGK 210

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 53.9 bits (127), Expect = 7e-09
 Identities = 34/308 (11%), Positives = 80/308 (25%), Gaps = 15/308 (4%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE 67
           + VTG +GFIGS ++  L ++G      V +  +  K  +L++L  A     + K D   
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIAD---YMDKEDFLI 58

Query: 68  EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS 127
           +    E       +FH          D +  +          +    +           +
Sbjct: 59  QIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAA 118

Query: 128 SAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFIS 187
           + G    +      Y++                                        F  
Sbjct: 119 TYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPE--------ANSQIVGFRYFNV 170

Query: 188 IIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNA 247
             P       + S          +  +          +  FV++ D+   +++  E+  +
Sbjct: 171 YGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVS 230

Query: 248 KGRYICSSHPATILELAKFLREKYPEFN---VPTEFEDVDENMKNMLFSSKKL-TDLGFK 303
               + +    +   +A      + +     +P   +               L      K
Sbjct: 231 GIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDK 290

Query: 304 FKYSLDDM 311
              ++ + 
Sbjct: 291 PFKTVAEG 298

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 8e-09
 Identities = 32/259 (12%), Positives = 65/259 (25%), Gaps = 43/259 (16%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           +V + GASG  G  L+  +LE+G   + T+         +   +             D A
Sbjct: 16  SVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYA 75

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
                 +    C G        +   +   + V++                         
Sbjct: 76  SAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSA----------------------- 112

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
                               ++ L    + K + ++Y   K   E    +        + 
Sbjct: 113 ----------ELAKAGGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEEL---KFDRYS 159

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN 246
              P +++     S     L+                  G  V +  +  A +     P 
Sbjct: 160 VFRPGVLLCDRQESRPGEWLVRKFFGSLP-----DSWASGHSVPVVTVVRAMLNNVVRPR 214

Query: 247 AKGRYICSSHPATILELAK 265
            K   +  +    I +L K
Sbjct: 215 DKQMELLEN--KAIHDLGK 231

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 47.6 bits (111), Expect = 8e-07
 Identities = 48/335 (14%), Positives = 83/335 (24%), Gaps = 42/335 (12%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLELPKASTHLTLWKADLA 66
           V + G +GFIG+ L  RLL   +     V   D     +   L  P         + D++
Sbjct: 3   VLILGVNGFIGNHLTERLLREDHYE---VYGLDIGSDAISRFLNHPH----FHFVEGDIS 55

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
               + E       V             P      P     +      +  +   +    
Sbjct: 56  IHSEWIEYHVKKCDVVL----PLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR 111

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFI 186
               +                     V  V    W+Y VSK L ++  W + E+  + F 
Sbjct: 112 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 171

Query: 187 SIIPSLVVGPFLTSSMPPSLITALSPITRNEA-----HYPIIKQGQFVHLDDLCSAHIFL 241
              P   +GP L +     + ++ +               +I  G+           I  
Sbjct: 172 LFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEA 231

Query: 242 FEHPNAKGRYICSSHPATI---------LELAKFL---------REKYPEFNVPTEFEDV 283
                      C      I          EL + L         R  +P F      E  
Sbjct: 232 LYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESS 291

Query: 284 -------DENMKNMLFSSKKLTDLGFKFKYSLDDM 311
                   +              L ++ K  + + 
Sbjct: 292 SYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQET 326

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 17/160 (10%), Positives = 35/160 (21%), Gaps = 3/160 (1%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVR---DPDNKKKVKHLLELPKASTHLTLWKAD 64
           + +TGA+G +G  +  +L  +   V  T     D  N   V       K +  +      
Sbjct: 4   ILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAHT 63

Query: 65  LAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV 124
             ++      +                       V   T        +            
Sbjct: 64  AVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFDEVNPQ 123

Query: 125 FTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYF 164
                  L+ E   K +  +       ++           
Sbjct: 124 SAYGKTKLEGENFVKALNPKYYIVRTAWLYGDGNNFVKTM 163

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 36/242 (14%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
              +TGA   IG  + +     G +V  +  + D    V    E+ +        + D+ 
Sbjct: 13  CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVD--EIQQLGGQAFACRCDIT 70

Query: 67  EEG---NFDEPIRGCTGVFHL----ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT 119
            E       +      G   +    A     +  D      R      V           
Sbjct: 71  SEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVA 130

Query: 120 VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
                                +   TS +  +   ++         +  L    A+   E
Sbjct: 131 PEMEKN-----------GGGVILTITSMAAENKNINMTSYASSKAAASHLVRNMAFDLGE 179

Query: 180 ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHI 239
           + NI    I P  ++   L S + P +   +        H PI    +     D+ +A +
Sbjct: 180 K-NIRVNGIAPGAILTDALKSVITPEIEQKM------LQHTPI---RRLGQPQDIANAAL 229

Query: 240 FL 241
           FL
Sbjct: 230 FL 231

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 44.7 bits (105), Expect = 6e-06
 Identities = 35/249 (14%), Positives = 67/249 (26%), Gaps = 37/249 (14%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLT------- 59
              +TG +G IG       +  G  V       D+ +KV + +  P   + +        
Sbjct: 8   VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDE 67

Query: 60  ----LWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACK 115
               L    +A+ G  D        +      +     +    V+   + G   + +   
Sbjct: 68  DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAA 127

Query: 116 NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAW 175
                 +               +  +    S S      + +    +Y  +K        
Sbjct: 128 RVMIPAK---------------KGSIVFTASISSF---TAGEGVSHVYTATKHAVLGLTT 169

Query: 176 KFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLD 232
               E     I    + P +V  P LT           S      AH     +G  +  +
Sbjct: 170 SLCTELGEYGIRVNCVSPYIVASPLLTDVFGVD-----SSRVEELAHQAANLKGTLLRAE 224

Query: 233 DLCSAHIFL 241
           D+  A  +L
Sbjct: 225 DVADAVAYL 233

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 31/249 (12%), Positives = 78/249 (31%), Gaps = 41/249 (16%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
              VTG +  +G  ++  LL  G  V  +  +    +++    EL + S  +   + D++
Sbjct: 8   VALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA--ELGERSMFV---RHDVS 62

Query: 67  EEGNFDE----------PIRGCTGVFHLATPMDFESKDPE--NEVIRPTINGMVSIMRAC 114
            E ++             +        +  P D E+   E  + +++     +    +  
Sbjct: 63  SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQG 122

Query: 115 --KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQ 172
                +T   ++  +S  +    E                         +  +++  A  
Sbjct: 123 IAAMKETGGSIINMASVSSWLPIEQYAGY--------------SASKAAVSALTRAAALS 168

Query: 173 AAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLD 232
              +      I   SI P  +  P + +S+P  +   +           + + G+    +
Sbjct: 169 CRKQ---GYAIRVNSIHPDGIYTPMMQASLPKGVSKEMV-----LHDPKLNRAGRAYMPE 220

Query: 233 DLCSAHIFL 241
            +    +FL
Sbjct: 221 RIAQLVLFL 229

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 38/262 (14%), Positives = 84/262 (32%), Gaps = 40/262 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK---------HLLELPKASTH 57
            V +TG +  +G  L+ R +  G  V    +  +   +++          + ++      
Sbjct: 7   AVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQ 66

Query: 58  LTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDP----ENEVIRPTINGMVSIMRA 113
                  +A  G  D  I    G++  +T +    ++      +EV    + G +  ++A
Sbjct: 67  KQAASRCVARFGKIDTLIP-NAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKA 125

Query: 114 CKNAKTVRR---LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLA 170
           C  A    R   +   S+AG         P+Y     + +  VR              LA
Sbjct: 126 CLPALVASRGNVIFTISNAGFYPNGGG--PLYTAAKHAIVGLVRE-------------LA 170

Query: 171 EQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVH 230
            + A        +    +    +       S       A+S +   +    ++  G+   
Sbjct: 171 FELAP------YVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGRMPE 224

Query: 231 LDDLCSAHIFLFEHPNAKGRYI 252
           +++   A++F     +A     
Sbjct: 225 VEEYTGAYVFFATRGDA--APA 244

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 35/247 (14%), Positives = 79/247 (31%), Gaps = 29/247 (11%)

Query: 7   TVCVTGASGFIGSWLIMRLL---ERGYAVRATVRDPDNKKKVKHLLELPKASTHLTL--- 60
           ++ +TG +  +G  L+  LL   +    +  T R+ +  K+++ L +       L +   
Sbjct: 4   SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLR 63

Query: 61  ----------WKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSI 110
                         + ++   +            A      S++  +  ++      + +
Sbjct: 64  NFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLD-TLQTNTVVPIML 122

Query: 111 MRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW-MYFVSKT- 168
            +AC        L+  ++                   S L  ++     G   Y  SK+ 
Sbjct: 123 AKACL------PLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNTDGGMYAYRTSKSA 176

Query: 169 ---LAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ 225
                +  +     +  I  +S+ P  V      SS P  + T+   I +  +     + 
Sbjct: 177 LNAATKSLSVDLYPQ-RIMCVSLHPGWVKTDMGGSSAPLDVPTSTGQIVQTISKLGEKQN 235

Query: 226 GQFVHLD 232
           G FV+ D
Sbjct: 236 GGFVNYD 242

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 17/139 (12%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
              VTGASG IG+ +   L+++G  V    R   N +++    +       L  ++ DL+
Sbjct: 12  LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 71

Query: 67  EEGNFDE----------PIRGCTGVFHLATPMDFESKDPE--NEVIRPTINGMVSIMRAC 114
            E +              +  C     LA P    S       ++    +  +    R  
Sbjct: 72  NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREA 131

Query: 115 -----KNAKTVRRLVFTSS 128
                +       ++  +S
Sbjct: 132 YQSMKERNVDDGHIININS 150

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 42.6 bits (98), Expect = 4e-05
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 6/49 (12%)

Query: 8  VCVTGASGFIGSWLIMRLLERGYAVRATVRDPD------NKKKVKHLLE 50
          + + G +G +G  L   L   G  +   V   +      N K V   + 
Sbjct: 3  ILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVR 51

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 32/249 (12%), Positives = 78/249 (31%), Gaps = 42/249 (16%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           TV VTG +  IG  ++      G  +    R+     +     +  K    +T    D +
Sbjct: 10  TVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS--KWQKKGFQVTGSVCDAS 67

Query: 67  EEGNFDEPIRG--------------CTGVFHLATPMDFESKDPENEVIRPTINGMVSIMR 112
                ++ ++                 G       +D+ ++D    +   + N + S   
Sbjct: 68  LRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHI---STN-LESAYH 123

Query: 113 ACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQ 172
             + A  + +     +   +            + +S      + K    +  +++ LA +
Sbjct: 124 LSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYS------ATKG--ALNQLARNLACE 175

Query: 173 AAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLD 232
            A        I   ++ P+++  P   +         +       +  P+   G+F   +
Sbjct: 176 WASD-----GIRANAVAPAVIATPLAEAVYDDEFKKVV------ISRKPL---GRFGEPE 221

Query: 233 DLCSAHIFL 241
           ++ S   FL
Sbjct: 222 EVSSLVAFL 230

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 50/310 (16%), Positives = 94/310 (30%), Gaps = 55/310 (17%)

Query: 8   VCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLL-ELPKASTHLTLWKA 63
           V +TG S  IG  L +RL       + V AT+RD   + ++      L      L   + 
Sbjct: 5   VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64

Query: 64  DLAEEGNFDEPIRGCTGVF----------HLATPMDFESKDPENEVIRPTINGMVSIMRA 113
           D+ +  +        T              L  P++   +D    V+   + G V +++A
Sbjct: 65  DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124

Query: 114 C----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTL 169
                K   + R LV  S  G + +  +   VY                   +  + ++L
Sbjct: 125 FLPDMKRRGSGRVLVTGSVGGLMGLPFN--DVY-------------CASKFALEGLCESL 169

Query: 170 AEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-------PSLITALSPITRNEAHYPI 222
           A            +    I    V   F+   +         + I       +  AH   
Sbjct: 170 AVLLLPF-----GVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQ 224

Query: 223 IKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPTEFED 282
           + +    + +++    +     P    RY       T       LR +  +   P+   +
Sbjct: 225 VFREAAQNPEEVAEVFLTALRAPKPTLRYF------TTERFLPLLRMRLDD---PS-GSN 274

Query: 283 VDENMKNMLF 292
               M   +F
Sbjct: 275 YVTAMHREVF 284

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 28/247 (11%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVR--ATVRDPDNKKKVKHLLELPKASTHLTLWKAD 64
           +V VTGA+  IG  L+ +L++        AT RD +   ++K + +     + + +    
Sbjct: 5   SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD-----SRVHVLPLT 59

Query: 65  LAEEGNFDEPIRG---------------CTGVFHLATPMDFESKDPENEVIRPTINGMVS 109
           +  + + D  +                   GV          ++    E +      +V 
Sbjct: 60  VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119

Query: 110 IMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM-YFVSKT 168
           + +       ++      S   L V             S  D          + Y +SK 
Sbjct: 120 LTQKL--LPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMSKA 177

Query: 169 LAEQAAWKFAEE---NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ 225
                    A +   +N+  ++  P  V       +   ++  + + +  +         
Sbjct: 178 AINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGKNAALTVEQSTAELISSFNKLDNSHN 237

Query: 226 GQFVHLD 232
           G+F   +
Sbjct: 238 GRFFMRN 244

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 22/213 (10%), Positives = 53/213 (24%), Gaps = 33/213 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V +TGA   IG        +    +     +    ++     +       +  +  D +
Sbjct: 9   IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAA--KCKGLGAKVHTFVVDCS 66

Query: 67  EEGNFDEPIRGCTGVF------------HLATPMDFESKDPENEVIRPTINGMVSIMRAC 114
              +     +                     + +         +     +       +A 
Sbjct: 67  NREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAF 126

Query: 115 KNAKTVR---RLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAE 171
             A T      +V  +SA            Y  + ++ + F              KTL +
Sbjct: 127 LPAMTKNNHGHIVTVASAAGHVSVPFL-LAYCSSKFAAVGF-------------HKTLTD 172

Query: 172 QAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP 204
           + A    +   +    + P+ V   F+ +    
Sbjct: 173 ELAAL--QITGVKTTCLCPNFVNTGFIKNPSTS 203

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 6e-05
 Identities = 38/245 (15%), Positives = 72/245 (29%), Gaps = 29/245 (11%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
              VTGA+  IG      LL +G  V     + +   + K  L            + D+A
Sbjct: 5   VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 64

Query: 67  EEGN----FDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRAC------KN 116
           ++      F + +     +  L       ++    + ++  +  ++S           +N
Sbjct: 65  DQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQN 124

Query: 117 AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWK 176
                 ++  SS   L     + PVY  +    + F RS  +               A  
Sbjct: 125 GGEGGIIINMSSLAGLMPVAQQ-PVYCASKHGIVGFTRSAAL---------------AAN 168

Query: 177 FAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
                 +   +I P  V    L S            I   +    +IK    +    + +
Sbjct: 169 LMNS-GVRLNAICPGFVNTAILESIEKEE--NMGQYIEYKDHIKDMIKYYGILDPPLIAN 225

Query: 237 AHIFL 241
             I L
Sbjct: 226 GLITL 230

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 41.2 bits (96), Expect = 7e-05
 Identities = 37/247 (14%), Positives = 64/247 (25%), Gaps = 33/247 (13%)

Query: 10  VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE- 68
           VTGA+  IG  +  RL + G  V    R  +  +      EL +A         D+    
Sbjct: 7   VTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK--ELREAGVEADGRTCDVRSVP 64

Query: 69  -------------GNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACK 115
                        G  D  +    G        +   +   + V            +  K
Sbjct: 65  EIEALVAAVVERYGPVDVLV-NNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLK 123

Query: 116 NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAW 175
               + R             +         S S             +   +K L  + A 
Sbjct: 124 AGGMLERGTGRIVNIASTGGKQGVVHAAPYSAS----------KHGVVGFTKALGLELA- 172

Query: 176 KFAEENNIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHYPIIKQGQFVHLDDL 234
                  I   ++ P  V  P   S     S I  +S     +     +  G++V   ++
Sbjct: 173 ----RTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEV 228

Query: 235 CSAHIFL 241
                +L
Sbjct: 229 AEMVAYL 235

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 31/215 (14%), Positives = 65/215 (30%), Gaps = 31/215 (14%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V V G  G +GS  +     R + V +     + +     ++++  + T          
Sbjct: 4   RVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEV 63

Query: 67  EEGNFDEPIRG---CTGVFHLATPMDFESKDPENEVIRPTINGMV-SIMRACKNAKTVRR 122
            +   D+ +       G +              + + + +I     S   A K+ K    
Sbjct: 64  GKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGL 123

Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK----TLAEQAAWKFA 178
           L    +   LD                             Y ++K     L +  A K +
Sbjct: 124 LTLAGAKAALDGTPGM----------------------IGYGMAKGAVHQLCQSLAGKNS 161

Query: 179 -EENNIDFISIIPSLVVGPFLTSSMPPSLITALSP 212
              +    I+++P  +  P    SMP +  ++ +P
Sbjct: 162 GMPSGAAAIAVLPVTLDTPMNRKSMPEADFSSWTP 196

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 35/247 (14%), Positives = 68/247 (27%), Gaps = 45/247 (18%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V VTGA   IG   +  L   G  V A  R   +   +    E P           DL 
Sbjct: 9   RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR--ECPGIEPV----CVDLG 62

Query: 67  EEGNFDE------PIRGCTGVFHLATPMDFESKDPE--NEVIRPTINGMVSIMRACKNAK 118
           +    +       P+        +A    F     E  +      +  ++ + +      
Sbjct: 63  DWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVAR-- 120

Query: 119 TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK----TLAEQAA 174
                               + V            +       +Y  +K     L +  A
Sbjct: 121 ----------------GLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMA 164

Query: 175 WKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDL 234
            +      I   ++ P++V+     +          S   + +     I  G+F  ++ +
Sbjct: 165 LELGPH-KIRVNAVNPTVVMTSMGQA--------TWSDPHKAKTMLNRIPLGKFAEVEHV 215

Query: 235 CSAHIFL 241
            +A +FL
Sbjct: 216 VNAILFL 222

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 37/246 (15%), Positives = 68/246 (27%), Gaps = 21/246 (8%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
              VTGA G IG    +RL E G A+     + +  +K +    + +       +  D+ 
Sbjct: 7   VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEA--SVREKGVEARSYVCDVT 64

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
            E                +   DF   D                     +   V  +  T
Sbjct: 65  SEEAVIG--------TVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVT 116

Query: 127 SSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM--YFVSKTLAEQAAWKFAEE---N 181
            +   L     +    +     +   +  VK    M  Y  SK          A +    
Sbjct: 117 GAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAALDLAPY 176

Query: 182 NIDFISIIPSLVVGPFLTSSMPP------SLITALSPITRNEAHYPIIKQGQFVHLDDLC 235
           NI   +I P  +   F+            S   +  P    +     +   ++  ++++ 
Sbjct: 177 NIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIP 236

Query: 236 SAHIFL 241
               FL
Sbjct: 237 GVVAFL 242

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 39/256 (15%), Positives = 83/256 (32%), Gaps = 42/256 (16%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADL 65
           TV +TG+S  IG    +   + G  V  T R  +  ++  + +L+   +   +    AD+
Sbjct: 7   TVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 66

Query: 66  AEEGNFDEPIR----------------GCTGVFHLATPMDFESKDPENEVIRPTINGMVS 109
             E   D+ I                 G        T    +  D  ++ ++  +  ++ 
Sbjct: 67  TTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 126

Query: 110 IMRACKNAKTVRR----LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV 165
           + +  K      +     V +  AG     +    +Y   +               +   
Sbjct: 127 MTKKVKPHLVASKGEIVNVSSIVAGPQAQPDF---LYYAIAK------------AALDQY 171

Query: 166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ 225
           +++ A   A     +  I   S+ P +V   F T++M      +        +H   I  
Sbjct: 172 TRSTAIDLA-----KFGIRVNSVSPGMVETGF-TNAMGMPDQASQKFYNFMASHKECIPI 225

Query: 226 GQFVHLDDLCSAHIFL 241
           G     + + +  +FL
Sbjct: 226 GAAGKPEHIANIILFL 241

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 33/256 (12%), Positives = 72/256 (28%), Gaps = 52/256 (20%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           T  VTG S  IG  ++  L   G +V    R+           +       +     DL+
Sbjct: 10  TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLT--QWRSKGFKVEASVCDLS 67

Query: 67  EEGNFDEPIRGCTGVFH-----------LATPMDFESKDPE--NEVIRPTINGMVSIMRA 113
                 E +      FH           +    + +    E  + ++         +   
Sbjct: 68  SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVL 127

Query: 114 ----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK-- 167
                K ++    +  +S +G L V                           +Y  +K  
Sbjct: 128 AHPFLKASERGNVVFISSVSGALAVPYE-----------------------AVYGATKGA 164

Query: 168 --TLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ 225
              L    A+++A++ NI    + P ++    +  ++          + +      +   
Sbjct: 165 MDQLTRCLAFEWAKD-NIRVNGVGPGVIATSLVEMTIQDPEQKE--NLNKLIDRCAL--- 218

Query: 226 GQFVHLDDLCSAHIFL 241
            +     +L +   FL
Sbjct: 219 RRMGEPKELAAMVAFL 234

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 13/119 (10%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLT------- 59
              +TG +  IG  +  + +E G  V  T R  D  +K    +  P              
Sbjct: 8   VAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDED 67

Query: 60  ----LWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRAC 114
               L+ A     G     +    G+    +  +  +     +++   ++G+    R  
Sbjct: 68  GWTKLFDATEKAFGPVSTLV-NNAGIAVNKSVEET-TTAEWRKLLAVNLDGVFFGTRLG 124

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 31/250 (12%), Positives = 65/250 (26%), Gaps = 33/250 (13%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
              VTGA   IG  + M L  RG  V     +     + + +  + K  +     KA++ 
Sbjct: 20  VALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAE-EVVAAIKKNGSDAACVKANVG 78

Query: 67  EEGNFDE----------PIRGCTGVFHLATPMDFESKDPE--NEVIRPTINGMVSIMRAC 114
              +              +        + +    +   PE  + V      G   + R  
Sbjct: 79  VVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREA 138

Query: 115 KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAA 174
                +   +    + T   +   K      S             G +   ++ +A   A
Sbjct: 139 YKHLEIGGRLILMGSITGQAKAVPKHAVYSGSK------------GAIETFARCMAIDMA 186

Query: 175 WKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ---GQFVHL 231
                +  I    + P  +      +     +    +        Y  ++     +    
Sbjct: 187 -----DKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLRRVGLP 241

Query: 232 DDLCSAHIFL 241
            D+     FL
Sbjct: 242 IDIARVVCFL 251

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 36/247 (14%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            V +TG+S  +G  + +R       V    R  +++     L E+ K        K D+ 
Sbjct: 9   VVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEAN-SVLEEIKKVGGEAIAVKGDVT 67

Query: 67  EEGNFDE----------PIRGCTGVFHLATPMDFESKDPE--NEVIRPTINGMVSIMRAC 114
            E +              +        L  P+          N+VI   + G     R  
Sbjct: 68  VESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREA 127

Query: 115 KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAA 174
                   +  T    +   E+   P++   + S           G M  +++TLA + A
Sbjct: 128 IKYFVENDIKGTVINMSSVHEKIPWPLFVHYAAS----------KGGMKLMTETLALEYA 177

Query: 175 WKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDL 234
                   I   +I P  +  P            A       E+  P+   G     +++
Sbjct: 178 -----PKGIRVNNIGPGAINTPINAEKFADPEQRA-----DVESMIPM---GYIGEPEEI 224

Query: 235 CSAHIFL 241
            +   +L
Sbjct: 225 AAVAAWL 231

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 36/242 (14%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE-------LPKASTHLT 59
            V +TGA+  IG   +    + G  + A   +    ++    +        +   ++   
Sbjct: 7   AVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVER 66

Query: 60  LWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT 119
            +   LA  G  D  +    G+           +D E  +        +    A +  + 
Sbjct: 67  GFAEALAHLGRLDGVV-HYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMRE 125

Query: 120 VRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAE 179
                   +A  + +    +  Y                   +  +++TLA +       
Sbjct: 126 KNPGSIVLTASRVYLGNLGQANY-------------AASMAGVVGLTRTLALELG----- 167

Query: 180 ENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHI 239
              I   ++ P  +    +T+ +P  +           A  P+   G+     ++  A +
Sbjct: 168 RWGIRVNTLAPGFIETR-MTAKVPEKVREKA------IAATPL---GRAGKPLEVAYAAL 217

Query: 240 FL 241
           FL
Sbjct: 218 FL 219

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 37/245 (15%), Positives = 77/245 (31%), Gaps = 38/245 (15%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
            + +T A+  IG    +     G  V AT  +    ++++    +      +T  K    
Sbjct: 8   VIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQ 67

Query: 67  EEGNFDEP--IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRA----CKNAKTV 120
                +    +    G  H  T +D E KD +   +   +  M  +++A        K+ 
Sbjct: 68  FANEVERLDVLFNVAGFVHHGTVLDCEEKDWD-FSMNLNVRSMYLMIKAFLPKMLAQKSG 126

Query: 121 RRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK----TLAEQAAWK 176
             +  +S A ++                         +   +Y  +K     L +  A  
Sbjct: 127 NIINMSSVASSV----------------------KGVVNRCVYSTTKAAVIGLTKSVAAD 164

Query: 177 FAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
           F ++  I    + P  V  P L   +        +P           K G+F   +++  
Sbjct: 165 FIQQ-GIRCNCVCPGTVDTPSLQERIQ----ARGNPEEARNDFLKRQKTGRFATAEEIAM 219

Query: 237 AHIFL 241
             ++L
Sbjct: 220 LCVYL 224

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
             VTGA   IG  + +RL++ G+AV     +    K V    E+ +A  H    K D++
Sbjct: 3  VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS--EINQAGGHAVAVKVDVS 60

Query: 67 EE 68
          + 
Sbjct: 61 DR 62

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 11/62 (17%), Positives = 22/62 (35%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V +TG    +G    +RL   G  +       +  +  K  +        +    AD++
Sbjct: 6  VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 65

Query: 67 EE 68
          +E
Sbjct: 66 DE 67

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V    A G IG      L++R       +   +N   +  L        ++T    D+ 
Sbjct: 7  NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKA-INPKVNITFHTYDVT 65

Query: 67 EE 68
            
Sbjct: 66 VP 67

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.4 bits (89), Expect = 6e-04
 Identities = 38/267 (14%), Positives = 81/267 (30%), Gaps = 44/267 (16%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADL 65
              +TG+S  IG    +     G  V  T R  +  ++  + +L    +  ++    AD+
Sbjct: 7   VAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 66

Query: 66  AEEGNFDEPIR----------------GCTGVFHLATPMDFESKDPENEVIRPTINGMVS 109
             +   DE +                 G       +     +S +  +  +   +  +++
Sbjct: 67  TTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIA 126

Query: 110 IMRA----CKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV 165
           + +       + K     + + ++G     +   P Y     +   + R+          
Sbjct: 127 LTKKAVPHLSSTKGEIVNISSIASGLHATPDF--PYYSIAKAAIDQYTRN---------- 174

Query: 166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ 225
               A         ++ I   SI P LV   F  S+M     T+    +        +  
Sbjct: 175 ---TAIDLI-----QHGIRVNSISPGLVATGF-GSAMGMPEETSKKFYSTMATMKECVPA 225

Query: 226 GQFVHLDDLCSAHIFLFEHPNAKGRYI 252
           G      D+     FL +   +   YI
Sbjct: 226 GVMGQPQDIAEVIAFLADRKTS--SYI 250

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
             VTGA   IG  +   L +    V    R   +   V    E+       + +  D++
Sbjct: 12 VALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD--EIKSFGYESSGYAGDVS 69

Query: 67 EEGNFDE 73
          ++    E
Sbjct: 70 KKEEISE 76

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           V VTG    IG+ ++   +  G  V    +D    + ++   ELP A         D+ 
Sbjct: 8  VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ--ELPGAVFI----LCDVT 61

Query: 67 EE 68
          +E
Sbjct: 62 QE 63

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 35/245 (14%), Positives = 74/245 (30%), Gaps = 22/245 (8%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADL 65
           +V +TG+S  IG    +   + G  V  T R+ D  ++  + +L+    +  +    AD+
Sbjct: 6   SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 65

Query: 66  AEEGNFDEPIRGCT---GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRR 122
            E    D+ I       G   +       +           +       +   N + V  
Sbjct: 66  TEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKL--NFQAVIE 123

Query: 123 LVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSK----TLAEQAAWKFA 178
           +   +    +  +     V    +                Y  +K          A    
Sbjct: 124 MTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPY------YACAKAALDQYTRCTAIDLI 177

Query: 179 EENNIDFISIIPSLVVGPFLTSSMPPSLIT--ALSPITRNEAHYPIIKQGQFVHLDDLCS 236
           +   +   S+ P  V   F+ +   P   +    S I   +   P+   G     +++ +
Sbjct: 178 QH-GVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV---GHCGKPEEIAN 233

Query: 237 AHIFL 241
             +FL
Sbjct: 234 IIVFL 238

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 37/249 (14%), Positives = 64/249 (25%), Gaps = 27/249 (10%)

Query: 7   TVCVTGASGFIG---SWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKA 63
              +TGAS   G   +  + RLL  G  +  + R     +++K  L   +    + L  A
Sbjct: 8   VCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAA 67

Query: 64  DLAEEGNFDEPIRGC-----------TGVFHLATPMDFESKDPENEVIRPTINGMVSIMR 112
           DL  E      +                + + A  +   SK   N      +N   ++  
Sbjct: 68  DLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNL 127

Query: 113 ACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQ 172
                 T   L     +  L                    +             + LA  
Sbjct: 128 TSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGKAARDML-YQVLA-- 184

Query: 173 AAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLD 232
                AEE ++  +S  P  +       +   S    L           +   G  V   
Sbjct: 185 -----AEEPSVRVLSYAPGPLDNDMQQLARETSKDPEL-----RSKLQKLKSDGALVDCG 234

Query: 233 DLCSAHIFL 241
                 + L
Sbjct: 235 TSAQKLLGL 243

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
              VTGA   IG   +  L   G  V A  R   +      L+ L K    +     DL 
Sbjct: 7   RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD------LVSLAKECPGIEPVCVDLG 60

Query: 67  EEGNFDEPIRGCTGVFHL--------ATPMDFESKDPENEVIRPTINGMVSIMRAC 114
           +    ++ + G   V  L          P    +K+  +      +  +  + +  
Sbjct: 61  DWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMV 116

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 4/129 (3%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTH----LTLWKA 63
           V V G  G +GS ++    + GY V       +++     L++  K  T     +    A
Sbjct: 5   VIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTA 64

Query: 64  DLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRL 123
              +    D       G    +       K+ +  + +   +  ++   A  + K    L
Sbjct: 65  SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLL 124

Query: 124 VFTSSAGTL 132
             T +A  +
Sbjct: 125 QLTGAAAAM 133

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
          T  VTG S  IG  ++  L   G  V    R+     +        +   ++     DL 
Sbjct: 8  TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE--IWREKGLNVEGSVCDLL 65

Query: 67 EEGNFDEPIRGCTGVFH 83
               D+ ++    VF 
Sbjct: 66 SRTERDKLMQTVAHVFD 82

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (84), Expect = 0.003
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 7  TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLE 50
             VTGAS  IG  +   L  RG  V  T    +  + +   L 
Sbjct: 6  IALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG 49

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 1/120 (0%)

Query: 8   VCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKKVKHLLELPKASTHLTLWKADLA 66
           V + GASG +GS   + L +  +     +     +  K++ L E    +   T   A++ 
Sbjct: 3   VTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIY 62

Query: 67  EEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFT 126
            E + +  I   + V  + + +  +      ++ +     +    +        +  V T
Sbjct: 63  VESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT 122

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 28/245 (11%), Positives = 68/245 (27%), Gaps = 27/245 (11%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK---------HLLELPKASTH 57
           T  +TG++  IG       +  G  V     + +  +              L++   ++ 
Sbjct: 7   TALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASI 66

Query: 58  LTLWKADLAEEGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNA 117
                  L   G+ D  +           P+   +++  + +    ++G + +M+A   A
Sbjct: 67  DRCVAELLDRWGSIDILVNNAA--LFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARA 124

Query: 118 KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKF 177
                             +            +            +  ++++         
Sbjct: 125 MIAGG----------RGGKIINMASQAGRRGEALVGVYCATKAAVISLTQSAGLNLI--- 171

Query: 178 AEENNIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHYPIIKQGQFVHLDDLCS 236
              + I+  +I P +V G          +    L    +       +  G+    +DL  
Sbjct: 172 --RHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTG 229

Query: 237 AHIFL 241
             IFL
Sbjct: 230 MAIFL 234

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 13/120 (10%)

Query: 7   TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLA 66
           T+ VTG +  IG      +   G  V    R   +  +V   +   +       ++ D++
Sbjct: 11  TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG-KEFGVKTKAYQCDVS 69

Query: 67  EEGNFDE----------PIRGCTGVFHLATPMDFESKDPEN--EVIRPTINGMVSIMRAC 114
                 +          PI G      ++          E+   V    + G+ +  RA 
Sbjct: 70  NTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAV 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	100.0
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	100.0
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	100.0
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	100.0
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	100.0
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	100.0
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	100.0
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	100.0
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	100.0
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	100.0
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	100.0
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	100.0
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	100.0
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	100.0
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	100.0
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	100.0
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	100.0
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	100.0
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	100.0
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	100.0
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.97
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.97
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.94
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.94
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.94
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.93
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.91
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.86
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.85
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.85
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.85
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.85
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.85
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.85
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.85
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.84
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.84
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.84
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.84
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.83
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.83
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.83
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.83
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.83
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.83
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.82
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.82
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.82
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.82
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.82
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.82
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.82
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.81
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.81
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.81
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.81
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.81
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.81
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.81
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.8
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.8
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.8
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.79
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.79
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.78
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.78
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.77
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.77
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.77
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.77
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.77
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.76
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.76
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.75
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.75
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.73
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.73
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.72
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.72
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.72
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.68
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.65
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.65
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.64
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.64
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.64
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.62
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.59
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.57
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.53
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.52
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.43
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.41
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.29
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.67
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.57
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.56
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.55
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.55
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.44
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.37
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.32
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.27
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.27
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.26
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.25
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.25
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.25
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	98.22
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.16
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.16
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.14
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.11
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.97
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.95
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.93
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.93
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.92
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.89
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.86
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.85
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.83
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.8
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.73
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.72
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.67
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.67
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.6
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.57
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.56
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.56
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.55
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.52
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.5
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.5
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.48
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.47
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.46
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.46
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.45
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.44
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.43
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.42
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.41
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.41
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.35
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.35
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.35
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.29
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.25
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.25
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.11
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.06
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.06
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.96
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	96.95
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.88
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.81
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.78
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.77
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.73
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.73
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.71
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.68
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.67
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.66
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.57
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.57
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.54
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.49
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.47
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.43
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.41
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.41
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.39
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.38
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.35
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.35
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.33
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.29
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.29
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.26
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.25
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.25
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.2
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.18
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.1
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.06
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.05
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.02
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.02
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.01
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.0
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.93
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.87
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.86
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.82
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.81
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.78
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.77
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.77
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.72
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.71
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.65
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.63
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.61
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.58
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.56
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.55
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.52
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.5
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.48
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.48
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.46
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.39
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.28
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.26
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.05
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.04
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.0
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.97
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.97
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.79
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.78
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.68
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	94.64
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.64
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.62
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.49
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.39
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.24
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.19
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.15
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.11
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.97
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.95
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.73
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.68
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	93.62
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.3
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.22
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	93.06
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.06
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.02
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.93
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	92.89
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.8
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.74
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.74
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.71
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.58
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	92.49
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	92.3
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.09
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.09
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	92.04
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.03
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.01
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.86
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	91.69
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.65
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.48
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.46
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	91.14
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.08
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	91.07
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.86
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.69
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	90.66
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.19
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	90.18
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.17
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	90.14
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.03
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	89.95
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	89.87
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.85
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	89.55
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	89.55
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	89.12
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.03
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	88.97
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.81
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	88.72
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	88.13
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.11
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	88.04
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	87.91
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	87.57
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.41
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	87.31
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	87.26
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	87.19
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	87.19
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	87.11
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.03
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	86.81
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	86.68
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	85.68
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	85.48
d1h9aa1	195	Glucose 6-phosphate dehydrogenase, N-terminal doma	85.24
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.11
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	85.01
d1qkia1	203	Glucose 6-phosphate dehydrogenase, N-terminal doma	84.82
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.77
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	84.7
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	84.54
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	83.39
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	83.35
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	83.34
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	83.17
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	83.06
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	83.0
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	82.61
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	82.44
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	81.66
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.49
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	81.23
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	81.22
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	81.01
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	80.73
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	80.65
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	80.28
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	80.1

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-47  Score=340.28  Aligned_cols=303  Identities=17%  Similarity=0.191  Sum_probs=225.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCC-CCCCcEEEEecccCCCCCchhhhC--CccE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELP-KASTHLTLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      |+|||||||||||++|+++|+++|++|++++|....  ...+..+...+ ...++++++++|++|.+++.++++  ++|+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE   81 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence            789999999999999999999999999999995432  22222222211 223689999999999999999998  5699


Q ss_pred             EEEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhcc
Q 040253           81 VFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVK  157 (338)
Q Consensus        81 vi~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~  157 (338)
                      |||+|+.... ....++..++++|+.++.+|+++|+..+  +.++|||+||.+|||  .....+++|++         +.
T Consensus        82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG--~~~~~~~~E~~---------~~  150 (357)
T d1db3a_          82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYG--LVQEIPQKETT---------PF  150 (357)
T ss_dssp             EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGT--TCCSSSBCTTS---------CC
T ss_pred             EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhC--CCCCCCcCCCC---------CC
Confidence            9999987652 2234445788999999999999999875  245899999999998  45566888987         45


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC-hhHHHhh-hhcccCCC--CCCCCCC-CccccHH
Q 040253          158 MTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP-PSLITAL-SPITRNEA--HYPIIKQ-GQFVHLD  232 (338)
Q Consensus       158 ~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~-~~~~~~~~--~~~~~~~-~~~i~v~  232 (338)
                      .|.++|+.+|+++|++++.++++++++++++||+++|||+...... ..+...+ ....+...  .++.+.+ ++++|++
T Consensus       151 ~P~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~  230 (357)
T d1db3a_         151 YPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAK  230 (357)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeec
Confidence            6889999999999999999999999999999999999998655432 2222222 22233332  2334443 6899999


Q ss_pred             HHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCC--------------------CCCCCCC---------
Q 040253          233 DLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFN--------------------VPTEFED---------  282 (338)
Q Consensus       233 D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~--------------------~~~~~~~---------  282 (338)
                      |+++++..++++. .++.||+ +++++|++|+++.+.+.+|...                    .+.....         
T Consensus       231 D~~~a~~~~~~~~-~~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (357)
T d1db3a_         231 DYVKMQWMMLQQE-QPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPR  309 (357)
T ss_dssp             HHHHHHHHTTSSS-SCCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGG
T ss_pred             hHHHHHHHHHhCC-CCCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeEeeccc
Confidence            9999999999875 5678987 5688999999999999886210                    0000000         


Q ss_pred             --ccccccccccchhhhhh-cCCcccccHHHHHHHHHHHHH
Q 040253          283 --VDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       283 --~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~  320 (338)
                        .|.+.....+|++++++ |||+|+++++|+|++++++..
T Consensus       310 ~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l  350 (357)
T d1db3a_         310 YFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDL  350 (357)
T ss_dssp             GCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred             cCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHH
Confidence              12233445679999988 999999999999999987644

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-48  Score=337.71  Aligned_cols=299  Identities=16%  Similarity=0.229  Sum_probs=225.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .||||||||+||||++|+++|+++|++|++++|.... ...+...         .....+|+.+.+.+..++.++|+|||
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~~~d~Vih   71 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHW---------IGHENFELINHDVVEPLYIEVDQIYH   71 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGG---------TTCTTEEEEECCTTSCCCCCCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHh---------cCCCceEEEehHHHHHHHcCCCEEEE
Confidence            3799999999999999999999999999999874332 2211111         11223344444445566678999999


Q ss_pred             ecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+.... ....+..+.+++|+.++.+|+++++..+ + ++||+||.+||+  .....+.+|+.+...    .+..|.++
T Consensus        72 lAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~-~-k~I~~SS~~vy~--~~~~~~~~e~~~~~~----~~~~p~~~  143 (312)
T d2b69a1          72 LASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVG-A-RLLLASTSEVYG--DPEVHPQSEDYWGHV----NPIGPRAC  143 (312)
T ss_dssp             CCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHT-C-EEEEEEEGGGGB--SCSSSSBCTTCCCBC----CSSSTTHH
T ss_pred             CcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcC-C-cEEEEEChheec--CCCCCCCCccccCCC----CCCCCccH
Confidence            9997552 2223445789999999999999999988 4 799999999998  444556666653221    14468899


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCCC-CCCCCC-CccccHHHHHHHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEAH-YPIIKQ-GQFVHLDDLCSAHI  239 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~i~v~D~a~~~~  239 (338)
                      |+.+|.++|.+++.+++++|++++++||+++|||+........+..++ ....+++.. ++.+.+ ++|+|++|+++++.
T Consensus       144 Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~  223 (312)
T d2b69a1         144 YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLV  223 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHH
Confidence            999999999999999999999999999999999987654333332222 333455543 344444 78999999999999


Q ss_pred             HhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh-cCCcccccHHHHHHHHH
Q 040253          240 FLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGAV  316 (338)
Q Consensus       240 ~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~  316 (338)
                      .+++.. .++.||+ ++..+|+.++++.+++.++. ..+.. ....+.+......|++++++ |||+|+++++++|++++
T Consensus       224 ~~~~~~-~~~~~n~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i  301 (312)
T d2b69a1         224 ALMNSN-VSSPVNLGNPEEHTILEFAQLIKNLVGS-GSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAI  301 (312)
T ss_dssp             HHHTSS-CCSCEEESCCCEEEHHHHHHHHHHHHTC-CCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHH
T ss_pred             HHHhhc-cCCceEecCCcccchhhHHHHHHHHhCC-CCceEECCCCCCCCCeeeECHHHHHHHHCCCCCCCHHHHHHHHH
Confidence            998765 5778987 56889999999999999874 33332 22334455667789999987 99999999999999999


Q ss_pred             HHHHHc
Q 040253          317 DTCRAK  322 (338)
Q Consensus       317 ~~~~~~  322 (338)
                      +||+++
T Consensus       302 ~w~~~~  307 (312)
T d2b69a1         302 HYFRKE  307 (312)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=100.00  E-value=3e-48  Score=341.89  Aligned_cols=299  Identities=19%  Similarity=0.231  Sum_probs=233.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEE------EEEcCC--CcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVR------ATVRDP--DNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRG   77 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~------~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   77 (338)
                      |||||||||||||++|+++|+++|++|.      ++++..  .....+...    ...++++++.+|+.+.........+
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~   76 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPV----DADPRLRFVHGDIRDAGLLARELRG   76 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGG----TTCTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhh----hcCCCeEEEEeccccchhhhccccc
Confidence            6899999999999999999999987554      443321  111111111    1236899999999999988888889


Q ss_pred             ccEEEEecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhc
Q 040253           78 CTGVFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        78 ~d~vi~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~  156 (338)
                      +|+|+|+|+... ........+.++.|+.++.+++++|.+.+ +++|||+||.++||  .....+++|++         +
T Consensus        77 ~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~-~~~~I~~Ss~~~yg--~~~~~~~~E~~---------~  144 (322)
T d1r6da_          77 VDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAG-VGRVVHVSTNQVYG--SIDSGSWTESS---------P  144 (322)
T ss_dssp             CCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTT-CCEEEEEEEGGGGC--CCSSSCBCTTS---------C
T ss_pred             cceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcC-CceEEEeecceeec--CCCCCCCCCCC---------C
Confidence            999999997644 11122334778999999999999999998 89999999999998  55566788887         5


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCC-CCCCCCC-CccccHHH
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEA-HYPIIKQ-GQFVHLDD  233 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~-~~~i~v~D  233 (338)
                      ..|.+.|+.+|.++|.+++.++++++++++++||+++|||++....  .+..++ ....+++. .++.+.+ ++|+|++|
T Consensus       145 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~--~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D  222 (322)
T d1r6da_         145 LEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEK--LIPLFVTNLLDGGTLPLYGDGANVREWVHTDD  222 (322)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTS--HHHHHHHHHHTTCCEEEETTSCCEEEEEEHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCc--HHHHHHHHHHcCCCcEEecCCCeEEccEEHHH
Confidence            5688999999999999999999999999999999999999865432  122222 23344443 3455544 78999999


Q ss_pred             HHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCC-CCCCccccccccccchhhhhh-cCCcccccHHH
Q 040253          234 LCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPT-EFEDVDENMKNMLFSSKKLTD-LGFKFKYSLDD  310 (338)
Q Consensus       234 ~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~  310 (338)
                      +|+++..+++++..+++||+ ++.++|+.|+++.+.+.++...... .....+.......+|++++++ |||+|+++++|
T Consensus       223 ~a~ai~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~~~ee  302 (322)
T d1r6da_         223 HCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQVSFAD  302 (322)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCSCHHH
T ss_pred             HHHHHHHHHhCCCCCCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCCCHHH
Confidence            99999999999888889988 5688999999999999987421111 223334555667789999987 99999999999


Q ss_pred             HHHHHHHHHHHc
Q 040253          311 MFTGAVDTCRAK  322 (338)
Q Consensus       311 ~i~~~~~~~~~~  322 (338)
                      +|+++++|++++
T Consensus       303 gI~~~i~w~~~n  314 (322)
T d1r6da_         303 GLARTVRWYREN  314 (322)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999999974

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=100.00  E-value=2.1e-47  Score=341.18  Aligned_cols=312  Identities=15%  Similarity=0.162  Sum_probs=227.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |||||||||||||++|+++|+++|++|++..++.........+... ...++++++++|++|+..+.++++  ++|+|||
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDI-SESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTT-TTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhh-hhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            5899999999999999999999999765544432222111222221 223689999999999999998887  6899999


Q ss_pred             ecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCC--------CccEEEEecCceeeeccCCCCCCcCCCCCCc-hhhh
Q 040253           84 LATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAK--------TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD-LDFV  153 (338)
Q Consensus        84 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~--------~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~-~~~~  153 (338)
                      +||.... ....++..++++|+.++.+++++|++.+        .+++|||+||..+||.  ....+..|..... ....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~--~~~~~~~~~~~~~~~~~e  157 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGD--LPHPDEVENSVTLPLFTE  157 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCC--CCCGGGSCTTSCCCCBCT
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCC--CccCCccccccCCCCccc
Confidence            9996541 1112334789999999999999997753        1469999999999983  2222222221111 0111


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHh-hhhcccCCC-CCCCCCC-Ccccc
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITA-LSPITRNEA-HYPIIKQ-GQFVH  230 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~-~~~i~  230 (338)
                      ..+..|.+.||.+|.++|.+++.++++++++++++||+++|||+.....  .+..+ .....+++. .++.+.+ ++|+|
T Consensus       158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~--~i~~~i~~~~~g~~~~v~g~g~~~r~~i~  235 (361)
T d1kewa_         158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEK--LIPLVILNALEGKPLPIYGKGDQIRDWLY  235 (361)
T ss_dssp             TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTS--HHHHHHHHHHHTCCEEEETTSCCEEEEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCc--HHHHHHHHHHcCCCcEEeCCCCeEEeCEE
Confidence            1255689999999999999999999999999999999999999865432  11111 223345543 3445554 78999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCC---CC----CC-CCCCccccccccccchhhhhh-c
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEF---NV----PT-EFEDVDENMKNMLFSSKKLTD-L  300 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~---~~----~~-~~~~~~~~~~~~~~~~~~~~~-l  300 (338)
                      ++|+|+++..++++...+++||+ ++.+.|+.|+++.+.+.++..   ..    .. .....+........|++++++ |
T Consensus       236 v~D~a~ai~~~~~~~~~~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~l  315 (361)
T d1kewa_         236 VEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISREL  315 (361)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHHHHHH
Confidence            99999999999998878889998 567899999999998865311   00    00 012234455667889999987 9


Q ss_pred             CCcccccHHHHHHHHHHHHHHc
Q 040253          301 GFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       301 g~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ||+|+++++++|+++++||+++
T Consensus       316 gw~P~~~l~e~i~~ti~w~~~n  337 (361)
T d1kewa_         316 GWKPLETFESGIRKTVEWYLAN  337 (361)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999875

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.8e-46  Score=333.79  Aligned_cols=304  Identities=15%  Similarity=0.095  Sum_probs=231.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +.|||||||||||||++|+++|+++|++|++++|........        .....++..+|+++.+.+.++++++|+|||
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih   85 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE--------DMFCDEFHLVDLRVMENCLKVTEGVDHVFN   85 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG--------GGTCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh--------hcccCcEEEeechhHHHHHHHhhcCCeEee
Confidence            467899999999999999999999999999998754331100        003568888999999999999999999999


Q ss_pred             ecccCCCC--CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           84 LATPMDFE--SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        84 ~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      +|+.....  ...........|+.++.+++++++..+ +++|||+||..+|+..  ...+.+|......  ...+..|.+
T Consensus        86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~-vk~~i~~SS~~~~~~~--~~~~~~~~~~~~~--e~~~~~p~~  160 (363)
T d2c5aa1          86 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING-IKRFFYASSACIYPEF--KQLETTNVSLKES--DAWPAEPQD  160 (363)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT-CSEEEEEEEGGGSCGG--GSSSSSSCEECGG--GGSSBCCSS
T ss_pred             cccccccccccccccccccccccchhhHHHHhHHhhC-cccccccccccccccc--ccccccccccccc--cCCcCCCCC
Confidence            99765421  134445788999999999999999999 9999999999999833  2333333321110  112456889


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChh--HH-Hhh-hhcccC-CCCCCCCCC-CccccHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPS--LI-TAL-SPITRN-EAHYPIIKQ-GQFVHLDDLC  235 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~--~~-~~~-~~~~~~-~~~~~~~~~-~~~i~v~D~a  235 (338)
                      .|+.+|+++|++++.+.+++|++++++||+++||++........  .. ... ...... ...++.+.+ ++|+|++|++
T Consensus       161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~  240 (363)
T d2c5aa1         161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECV  240 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccccccccccccccccccccccccccCCCCeEEEEeehhHHH
Confidence            99999999999999999999999999999999999765432211  11 111 111122 223444444 7899999999


Q ss_pred             HHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhh-cCCcccccHHHHHH
Q 040253          236 SAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFT  313 (338)
Q Consensus       236 ~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~  313 (338)
                      ++++.+++.. .++.||+ ++..+|+.|+++.+.+.++. +.++.....+........|++++++ |||+|+++++|+|+
T Consensus       241 ~~~~~~~~~~-~~~~~ni~~~~~~s~~~l~~~i~~~~g~-~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~sleegi~  318 (363)
T d2c5aa1         241 EGVLRLTKSD-FREPVNIGSDEMVSMNEMAEMVLSFEEK-KLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLR  318 (363)
T ss_dssp             HHHHHHHHSS-CCSCEEECCCCCEEHHHHHHHHHHTTTC-CCCEEEECCCCCCSBCEECCHHHHHHHSCCCCCCHHHHHH
T ss_pred             HHHHHHHhCC-CCCeEEEecCCcccHHHHHHHHHHHhCC-CCceEeCCCCCCccccccCHHHHHHHhCCCCCCCHHHHHH
Confidence            9999999875 5778987 67899999999999998874 4444434444455566789999987 99999999999999


Q ss_pred             HHHHHHHHc
Q 040253          314 GAVDTCRAK  322 (338)
Q Consensus       314 ~~~~~~~~~  322 (338)
                      ++++||+++
T Consensus       319 ~ti~w~~~~  327 (363)
T d2c5aa1         319 ITYFWIKEQ  327 (363)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999664

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=100.00  E-value=3.6e-46  Score=331.72  Aligned_cols=304  Identities=15%  Similarity=0.154  Sum_probs=229.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-HHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ||+|||||||||||++|+++|+++|++|.+++++..... ....+..  ...++++++.+|++|.+.+..++.+.|.|+|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~--~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA--ILGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGG--GCSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHH--hhcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            789999999999999999999999988777766432111 0000101  1126899999999999999999999999999


Q ss_pred             ecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCC----------CCCcCCCCCCchhh
Q 040253           84 LATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHR----------KPVYDETSWSDLDF  152 (338)
Q Consensus        84 ~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~----------~~~~~e~~~~~~~~  152 (338)
                      +|+..... ...+..++++.|+.++.++++++...+  .++|++||.++||.....          ...++|.+      
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~--~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~------  151 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYD--IRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAET------  151 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTS------
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhcccc--ccccccccceEecccCccccccccccCcccccccCC------
Confidence            99865521 112334788999999999999999988  579999999999732111          11222332      


Q ss_pred             hhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC-CCCCCCC-Ccccc
Q 040253          153 VRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA-HYPIIKQ-GQFVH  230 (338)
Q Consensus       153 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~i~  230 (338)
                         +..|.+.||.+|.++|.+++.++++++++++++||+++|||+...... ....+.....+... .++.+.+ ++|+|
T Consensus       152 ---~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~-~~~~i~~~~~~~~~~i~~~g~~~r~~i~  227 (346)
T d1oc2a_         152 ---NYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKF-IPRQITNILAGIKPKLYGEGKNVRDWIH  227 (346)
T ss_dssp             ---CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSH-HHHHHHHHHHTCCCEEETTSCCEEECEE
T ss_pred             ---CCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccch-hHHHHHHHHcCCceeEeCCCCccccccc
Confidence               556889999999999999999999999999999999999997644321 11222223334433 4444444 78999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccchhhhhh-cCCcccc-
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSSKKLTD-LGFKFKY-  306 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-lg~~~~~-  306 (338)
                      ++|+|+++..+++++..++.||+ +++..++.++++.+.+.++........ ...+........|++++++ |||+|++ 
T Consensus       228 v~D~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~~t  307 (346)
T d1oc2a_         228 TNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFT  307 (346)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCC
T ss_pred             hhhHHHHHHHHHhhcccCccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCcCC
Confidence            99999999999999888888876 678899999999999999864433322 2224445556789999987 9999997 


Q ss_pred             cHHHHHHHHHHHHHHc
Q 040253          307 SLDDMFTGAVDTCRAK  322 (338)
Q Consensus       307 ~~~~~i~~~~~~~~~~  322 (338)
                      +|+++|+++++|++++
T Consensus       308 ~l~e~i~~ti~w~~~n  323 (346)
T d1oc2a_         308 DFSEGLEETIQWYTDN  323 (346)
T ss_dssp             CHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            5999999999999975

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=2.8e-45  Score=325.40  Aligned_cols=307  Identities=18%  Similarity=0.163  Sum_probs=237.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcC--CCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLEL--PKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ++|+|||||||||||++|+++|+++|++|++++|... ...........  ....++++++.+|+.|...+.....+.+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~   94 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY   94 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccccc
Confidence            4689999999999999999999999999999998433 22222111111  11125789999999999988888889999


Q ss_pred             EEEecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCC
Q 040253           81 VFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMT  159 (338)
Q Consensus        81 vi~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p  159 (338)
                      |+|+++... .....+....++.|+.++.+|+++|.+.+ +++|||+||.++||  .....+.+|++         +..|
T Consensus        95 v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~-~~~~i~~SS~~vyg--~~~~~~~~E~~---------~~~p  162 (341)
T d1sb8a_          95 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAK-VQSFTYAASSSTYG--DHPGLPKVEDT---------IGKP  162 (341)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT-CSEEEEEEEGGGGT--TCCCSSBCTTC---------CCCC
T ss_pred             cccccccccccccccCccchhheeehhHHHHHHHHHhcC-CceEEEcccceeeC--CCCCCCccCCC---------CCCC
Confidence            999998644 21223345788999999999999999999 89999999999998  55566788887         5568


Q ss_pred             CchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCC--hhHHHh-hhhcccCCC-CCCCCCC-CccccHHHH
Q 040253          160 GWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMP--PSLITA-LSPITRNEA-HYPIIKQ-GQFVHLDDL  234 (338)
Q Consensus       160 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~--~~~~~~-~~~~~~~~~-~~~~~~~-~~~i~v~D~  234 (338)
                      .+.|+.+|.++|++++.+++.++++++++||+++||++..+...  ..+... .....+++. .++.+.+ ++|+|++|+
T Consensus       163 ~~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~  242 (341)
T d1sb8a_         163 LSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENT  242 (341)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEecc
Confidence            89999999999999999999999999999999999998765432  222222 223345543 3444444 789999999


Q ss_pred             HHHHHHhhcCCCC--CCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-----CCccccccccccchhhhhh-cCCccc
Q 040253          235 CSAHIFLFEHPNA--KGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-----EDVDENMKNMLFSSKKLTD-LGFKFK  305 (338)
Q Consensus       235 a~~~~~~l~~~~~--~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-lg~~~~  305 (338)
                      ++++..++.....  +++||+ ++...|+.|+++.+.+.++....+...     ...+.+......|++++++ |||+|+
T Consensus       243 ~~a~~~~~~~~~~~~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~  322 (341)
T d1sb8a_         243 VQANLLAATAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPK  322 (341)
T ss_dssp             HHHHHHHHTCCGGGCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCC
T ss_pred             chhhhhhhhccccccceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcC
Confidence            9999999876543  558887 458899999999999987643332221     1123445556789999988 999999


Q ss_pred             ccHHHHHHHHHHHHHHc
Q 040253          306 YSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       306 ~~~~~~i~~~~~~~~~~  322 (338)
                      ++++++|+++++||++.
T Consensus       323 ~sl~~gi~~ti~wy~~~  339 (341)
T d1sb8a_         323 YDVSAGVALAMPWYIMF  339 (341)
T ss_dssp             CCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999999873

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6e-45  Score=322.75  Aligned_cols=300  Identities=20%  Similarity=0.229  Sum_probs=224.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc----HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--Ccc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN----KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d   79 (338)
                      |||||||||||||++|++.|+++|++|++++|-...    ....+....     .+++++++|++|.+.+.++++  ++|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~d~~~l~~~~~~~~~d   75 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG-----KHPTFVEGDIRNEALMTEILHDHAID   75 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHT-----SCCEEEECCTTCHHHHHHHHHHTTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcC-----CCCEEEEeecCCHHHHHHHHhccCCC
Confidence            689999999999999999999999999999873221    122222211     579999999999999999987  899


Q ss_pred             EEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccC
Q 040253           80 GVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKM  158 (338)
Q Consensus        80 ~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~  158 (338)
                      +|||+||..... ....+..+++.|+.++.+++++|+..+ +++||++||.++|+  .....+..|.+        +...
T Consensus        76 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~-v~~~i~~Ss~~vy~--~~~~~~~~e~~--------~~~~  144 (338)
T d1udca_          76 TVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN-VKNFIFSSSATVYG--DQPKIPYVESF--------PTGT  144 (338)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGC--SCCSSSBCTTS--------CCCC
T ss_pred             EEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhC-CCEEEecCcceEEc--ccccccccccc--------ccCC
Confidence            999999965411 112334789999999999999999998 99999999999997  33344444444        2446


Q ss_pred             CCchHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCCC-------ChhH-HHhhhhcccC---------CCCC
Q 040253          159 TGWMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSSM-------PPSL-ITALSPITRN---------EAHY  220 (338)
Q Consensus       159 p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~-------~~~~-~~~~~~~~~~---------~~~~  220 (338)
                      |.++|+.+|.++|.++..+..++ +++++++||+++|||+.....       ...+ ..+.....+.         ....
T Consensus       145 p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~  224 (338)
T d1udca_         145 PQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPT  224 (338)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSS
T ss_pred             CcchHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCccc
Confidence            88999999999999999777665 899999999999998754321       1112 1122211121         1122


Q ss_pred             CCCCC-CccccHHHHHHHHHHhhcC---CCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccccccccch
Q 040253          221 PIIKQ-GQFVHLDDLCSAHIFLFEH---PNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-EDVDENMKNMLFSS  294 (338)
Q Consensus       221 ~~~~~-~~~i~v~D~a~~~~~~l~~---~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~  294 (338)
                      ..+.+ ++|+|++|+++++..+...   ...+++||+ ++.++|+.|+++.+.+.+|. +++..+ ...+.......+|+
T Consensus       225 ~~g~~~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~d~  303 (338)
T d1udca_         225 EDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGK-PVNYHFAPRREGDLPAYWADA  303 (338)
T ss_dssp             TTSSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHHHTS-CCCEEEECCCTTCCSBCCBCC
T ss_pred             CCCCceeeEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHHHCC-CCceEECCCCCCCCCEeeECH
Confidence            22333 6799999999888776653   223457998 45789999999999999874 333332 22344556677899


Q ss_pred             hhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          295 KKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       295 ~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      +++++ |||+|+++++++|+++++|++++
T Consensus       304 ~k~~~~lgwkp~~~l~egi~~ti~w~~~~  332 (338)
T d1udca_         304 SKADRELNWRVTRTLDEMAQDTWHWQSRH  332 (338)
T ss_dssp             HHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCcCCCHHHHHHHHHHHHHhc
Confidence            99997 99999999999999999999987

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=6.7e-44  Score=313.82  Aligned_cols=300  Identities=16%  Similarity=0.141  Sum_probs=232.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      |+|||||||||||++|+++|+++||+|++++|....  ...++.+.    ..++++++.+|++|.+.+.+.+.  ..+++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   76 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG----IEGDIQYEDGDMADACSVQRAVIKAQPQEV   76 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT----CGGGEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhc----ccCCcEEEEccccChHHhhhhhcccccccc
Confidence            689999999999999999999999999999996543  22233221    12689999999999998888776  57788


Q ss_pred             EEecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           82 FHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        82 i~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      +|+|+... .........+++.|+.++.++++++++.+..++|++.||..+|+  .......+|++         +..|.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~--~~~~~~~~E~~---------~~~p~  145 (321)
T d1rpna_          77 YNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFG--LIQAERQDENT---------PFYPR  145 (321)
T ss_dssp             EECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGC--SCSSSSBCTTS---------CCCCC
T ss_pred             ccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcC--cccCCCCCCCC---------Ccccc
Confidence            88887655 22223445789999999999999999988567899999998887  45556677877         55688


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh-hHH-HhhhhcccCCC--CCCCCCC-CccccHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP-SLI-TALSPITRNEA--HYPIIKQ-GQFVHLDDLC  235 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~-~~~i~v~D~a  235 (338)
                      +.|+.+|.++|.++..++++++++++++||+++|||........ .+. ...+...+...  .++.+.+ ++|+|++|+|
T Consensus       146 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~  225 (321)
T d1rpna_         146 SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYV  225 (321)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHH
Confidence            99999999999999999999999999999999999976554322 222 22222333333  2344444 6899999999


Q ss_pred             HHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCC-CCC---Cccccccccccchhhhhh-cCCcccccHH
Q 040253          236 SAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPT-EFE---DVDENMKNMLFSSKKLTD-LGFKFKYSLD  309 (338)
Q Consensus       236 ~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~-lg~~~~~~~~  309 (338)
                      +++..+++++. .+.||+ +++..|+.++++.+.+.++....+. ...   ..+.+......|++++++ |||+|+++++
T Consensus       226 ~~~~~~~~~~~-~~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~  304 (321)
T d1rpna_         226 EAMWLMLQQDK-ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLD  304 (321)
T ss_dssp             HHHHHHHHSSS-CCCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHH
T ss_pred             HHHHHHHhcCC-cCCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHH
Confidence            99999999864 567876 6788999999999999887421111 111   123445567789999998 8999999999


Q ss_pred             HHHHHHHHHHHH
Q 040253          310 DMFTGAVDTCRA  321 (338)
Q Consensus       310 ~~i~~~~~~~~~  321 (338)
                      |+|+++++|+.+
T Consensus       305 e~i~~tv~~~l~  316 (321)
T d1rpna_         305 ELIRMMVEADLR  316 (321)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-43  Score=312.59  Aligned_cols=305  Identities=20%  Similarity=0.294  Sum_probs=223.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh-hhCCccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE-PIRGCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~   83 (338)
                      |||||||||||||++|+++|+++| ++|+++++.......+.       ..++++++.+|+++.+.+.+ +.+++|+|||
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-------~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih   73 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------NHPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------TCTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-------cCCCeEEEECccCChHHHHHHHHhCCCcccc
Confidence            589999999999999999999998 58999988655433221       12689999999999877655 6668999999


Q ss_pred             ecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+.... .........+..|+.++.++++++...+  .+++++||..+|+  .......+|..+...  ..+...|.+.
T Consensus        74 ~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~--~~~~~~ss~~~~~--~~~~~~~~~~~~~~~--~~~~~~p~~~  147 (342)
T d2blla1          74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYG--MCSDKYFDEDHSNLI--VGPVNKPRWI  147 (342)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGB--TCCCSSBCTTTCCCB--CCCTTCGGGH
T ss_pred             ccccccccccccCCcccccccccccccccccccccc--ccccccccccccc--ccccccccccccccc--ccccCCCcch
Confidence            9997552 1122334779999999999999999988  4667899999998  444444444332211  1134457889


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC------ChhHHH-hhhhcccCCCC-CCCCCC-CccccHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM------PPSLIT-ALSPITRNEAH-YPIIKQ-GQFVHLDD  233 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~------~~~~~~-~~~~~~~~~~~-~~~~~~-~~~i~v~D  233 (338)
                      |+.+|.++|+++..+++++|++++++|++.+||++.....      ...+.. ......+++.. ++.+.+ ++|+|++|
T Consensus       148 Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D  227 (342)
T d2blla1         148 YSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRD  227 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHH
T ss_pred             hhhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCccccCCCCeeeeeccccc
Confidence            9999999999999999999999999999999999755432      111222 22333455543 344444 78999999


Q ss_pred             HHHHHHHhhcCCC---CCCceEEe-cC-CCCHHHHHHHHHHhCCCCCCCCCCCC---------------ccccccccccc
Q 040253          234 LCSAHIFLFEHPN---AKGRYICS-SH-PATILELAKFLREKYPEFNVPTEFED---------------VDENMKNMLFS  293 (338)
Q Consensus       234 ~a~~~~~~l~~~~---~~~~~~~~-~~-~~t~~e~~~~i~~~~~~~~~~~~~~~---------------~~~~~~~~~~~  293 (338)
                      +|+++..+++++.   .+++||++ ++ .+|+.|+++.+.+.++........+.               .........+|
T Consensus       228 ~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  307 (342)
T d2blla1         228 GIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPS  307 (342)
T ss_dssp             HHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------------CCCCCBC
T ss_pred             ccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccccccccccccccC
Confidence            9999999998743   24589984 44 48999999999998764322111111               11123344578


Q ss_pred             hhhhhh-cCCcccccHHHHHHHHHHHHHHcC
Q 040253          294 SKKLTD-LGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       294 ~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      ++++++ |||+|+++++|+|+++++||+++.
T Consensus       308 ~~k~~~~lgw~P~~sleegl~~ti~~y~~~~  338 (342)
T d2blla1         308 IRNAHRCLDWEPKIDMQETIDETLDFFLRTV  338 (342)
T ss_dssp             CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCcCCCHHHHHHHHHHHHHhCc
Confidence            999987 999999999999999999998764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-43  Score=312.59  Aligned_cols=303  Identities=17%  Similarity=0.147  Sum_probs=223.1

Q ss_pred             cEE-EEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCC--CCCCcEEEEecccCCCCCchhhhC--Cc
Q 040253            6 ETV-CVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELP--KASTHLTLWKADLAEEGNFDEPIR--GC   78 (338)
Q Consensus         6 ~~i-lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~--~~   78 (338)
                      ||| ||||||||||+||+++|+++||+|++++|.++.  ...++.+....  ....+++++.+|++|++.+.+++.  ++
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   80 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP   80 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence            578 999999999999999999999999999996542  11111111111  112578999999999999999886  67


Q ss_pred             cEEEEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCC--CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhh
Q 040253           79 TGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAK--TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRS  155 (338)
Q Consensus        79 d~vi~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~  155 (338)
                      ++|+|+++.... ....+...++++|+.++.++++++++.+  +.++|||+||.+|||  .....+++|++         
T Consensus        81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg--~~~~~~~~E~~---------  149 (347)
T d1t2aa_          81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYG--KVQEIPQKETT---------  149 (347)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTC--SCSSSSBCTTS---------
T ss_pred             ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheec--CCCCCCCCCCC---------
Confidence            899999986541 1122334678999999999999999876  245899999999998  45566788887         


Q ss_pred             ccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh-h-HHHhhhhcccCC--CCCCCCCC-Ccccc
Q 040253          156 VKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP-S-LITALSPITRNE--AHYPIIKQ-GQFVH  230 (338)
Q Consensus       156 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-~-~~~~~~~~~~~~--~~~~~~~~-~~~i~  230 (338)
                      +..|.++||.+|.++|++++.++++++++++++||+++|||+....... . .........+..  ..++.+.+ ++|+|
T Consensus       150 ~~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~  229 (347)
T d1t2aa_         150 PFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGH  229 (347)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEESCTTCEECCEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeecCCCcceeeeeE
Confidence            5568899999999999999999999999999999999999976544321 1 112222222222  23344443 78999


Q ss_pred             HHHHHHHHHHhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCC---------------------Ccccccc
Q 040253          231 LDDLCSAHIFLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFE---------------------DVDENMK  288 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~---------------------~~~~~~~  288 (338)
                      ++|+++++..++++... +.|+. .....++.+..+.+...++.........                     ..|....
T Consensus       230 v~D~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~  308 (347)
T d1t2aa_         230 AKDYVEAMWLMLQNDEP-EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVD  308 (347)
T ss_dssp             HHHHHHHHHHHHHSSSC-CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCC
T ss_pred             ecHHHHHHHHHhhcCCC-ccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCCCCCCcC
Confidence            99999999999998654 45655 6688999999999988876421100000                     0122333


Q ss_pred             ccccchhhhhh-cCCcccccHHHHHHHHHHHHH
Q 040253          289 NMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCR  320 (338)
Q Consensus       289 ~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~  320 (338)
                      ...+|++++++ |||+|+++++|+|++++++..
T Consensus       309 ~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~  341 (347)
T d1t2aa_         309 FLQGDCTKAKQKLNWKPRVAFDELVREMVHADV  341 (347)
T ss_dssp             BCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHH
T ss_pred             EeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHH
Confidence            45679999988 999999999999999987643

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-43  Score=311.60  Aligned_cols=304  Identities=18%  Similarity=0.235  Sum_probs=223.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC------C-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP------D-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~------~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-   76 (338)
                      .|||||||||||||++|+++|+++|++|++++|..      . .......+...  ...+++++++|++|.+.+.+++. 
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQEL--TGRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHH--HTCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHh--cCCCcEEEEeeccccccccccccc
Confidence            47999999999999999999999999999997511      1 11111211111  11578999999999999988876 


Q ss_pred             -CccEEEEecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhh
Q 040253           77 -GCTGVFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVR  154 (338)
Q Consensus        77 -~~d~vi~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~  154 (338)
                       ++++++|+||... ......+.+.++.|+.++.+++++++..+ +++|+|+||+.+|+...  .....+..        
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~-v~~~i~~ss~~~~~~~~--~~~~~~~~--------  148 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG-VKNLVFSSSATVYGNPQ--YLPLDEAH--------  148 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGGCSCS--SSSBCTTS--------
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcC-cccccccccceeeeccc--cccccccc--------
Confidence             5778999999654 11112334779999999999999999999 99999999999998332  22222222        


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCCCC-------Ch-hHHHhhhhccc---------C
Q 040253          155 SVKMTGWMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTSSM-------PP-SLITALSPITR---------N  216 (338)
Q Consensus       155 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~~~-------~~-~~~~~~~~~~~---------~  216 (338)
                      +...+.++|+.+|..+|+.+..+++.+ +++.+++||+++||+......       .. .+........+         .
T Consensus       149 ~~~~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~  228 (346)
T d1ek6a_         149 PTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGN  228 (346)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECS
T ss_pred             cccccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCC
Confidence            134577899999999999999988764 899999999999998754321       11 12111221111         1


Q ss_pred             CCCCCCCCC-CccccHHHHHHHHHHhhcC---CCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-CCCcccccccc
Q 040253          217 EAHYPIIKQ-GQFVHLDDLCSAHIFLFEH---PNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNM  290 (338)
Q Consensus       217 ~~~~~~~~~-~~~i~v~D~a~~~~~~l~~---~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~  290 (338)
                      ......+.+ ++|+|++|+|.++..++..   ....++||+ ++..+|+.|+++.+.+.++. +.+.. ....+.+....
T Consensus       229 ~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~-~~~~~~~~~~~~e~~~~  307 (346)
T d1ek6a_         229 DYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKASGK-KIPYKVVARREGDVAAC  307 (346)
T ss_dssp             CSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHHHCS-CCCEEEECCCTTCCSEE
T ss_pred             cccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHHhCC-CCCeEECCCCCCCCCEe
Confidence            222333433 6899999999999887654   223457988 56889999999999999874 33332 22335556677


Q ss_pred             ccchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          291 LFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       291 ~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ..|++++++ |||+|+++++|+|+++++|++++
T Consensus       308 ~~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n  340 (346)
T d1ek6a_         308 YANPSLAQEELGWTAALGLDRMCEDLWRWQKQN  340 (346)
T ss_dssp             CBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             eECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhC
Confidence            789999988 99999999999999999999975

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-42  Score=307.01  Aligned_cols=301  Identities=17%  Similarity=0.197  Sum_probs=220.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HH---HHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--Ccc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KK---KVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~---~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d   79 (338)
                      |.|||||||||||++|+++|+++|++|+++++-... ..   .......     .+++++++|++|.+.+.+++.  ++|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~Dl~d~~~l~~~~~~~~~d   76 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTK-----HHIPFYEVDLCDRKGLEKVFKEYKID   76 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHT-----SCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcc-----cCCeEEEeecCCHHHHHHHHhccCCC
Confidence            579999999999999999999999999999863322 11   1222211     578999999999999998876  899


Q ss_pred             EEEEecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCC--CCCCcCCCCCCchhhhhhc
Q 040253           80 GVFHLATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEH--RKPVYDETSWSDLDFVRSV  156 (338)
Q Consensus        80 ~vi~~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~--~~~~~~e~~~~~~~~~~~~  156 (338)
                      +|||+|+... .........+..+|+.++.+|+++|++.+ +++||++||.++||....  ...+++|+.         +
T Consensus        77 ~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~-i~~~i~~SS~~vyg~~~~~~~~~~~~e~~---------~  146 (347)
T d1z45a2          77 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYN-VSKFVFSSSATVYGDATRFPNMIPIPEEC---------P  146 (347)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT-CCEEEEEEEGGGGCCGGGSTTCCSBCTTS---------C
T ss_pred             EEEEccccccccccccCcccccccchhhhHHHHHHHHhcc-cceEEeecceeeecCcccCCCCCcccccc---------C
Confidence            9999999754 11122334788899999999999999998 999999999999984322  234566665         5


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHH--cCccEEEEcCCceeCCCCCCC-------CC-hhHHHhhhhcccC--CC-CCCCC
Q 040253          157 KMTGWMYFVSKTLAEQAAWKFAEE--NNIDFISIIPSLVVGPFLTSS-------MP-PSLITALSPITRN--EA-HYPII  223 (338)
Q Consensus       157 ~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~~ilRp~~v~G~~~~~~-------~~-~~~~~~~~~~~~~--~~-~~~~~  223 (338)
                      ..|.+.|+.+|.++|++++.+.+.  ++++++++||+++||+.....       .. ..+........+.  +. .++.+
T Consensus       147 ~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~  226 (347)
T d1z45a2         147 LGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDD  226 (347)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC---
T ss_pred             CCCCChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCC
Confidence            568899999999999999998765  489999999999999754321       11 1222222222222  21 22222


Q ss_pred             C------C-CccccHHHHHHHHHHhhcCC-------CCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCC-CCccccc
Q 040253          224 K------Q-GQFVHLDDLCSAHIFLFEHP-------NAKGRYIC-SSHPATILELAKFLREKYPEFNVPTEF-EDVDENM  287 (338)
Q Consensus       224 ~------~-~~~i~v~D~a~~~~~~l~~~-------~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~-~~~~~~~  287 (338)
                      .      . +|++++.|.+.++..+++..       ...++||+ ++.++|+.|+++.+.+.++. +.+... ...+.+.
T Consensus       227 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~  305 (347)
T d1z45a2         227 YDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGI-DLPYKVTGRRAGDV  305 (347)
T ss_dssp             ---CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHHHHHHTC-CCCC---------C
T ss_pred             ccccCCceeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHHHHHHCC-CCceEeCCCCCCCC
Confidence            1      1 46888888888888877531       12447888 56899999999999999874 344432 2334556


Q ss_pred             cccccchhhhhh-cCCcccccHHHHHHHHHHHHHHc
Q 040253          288 KNMLFSSKKLTD-LGFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       288 ~~~~~~~~~~~~-lg~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ....+|++++++ |||+|+++++|+|+++++|++++
T Consensus       306 ~~~~~d~sk~~~~lGw~p~~~lee~i~~ti~w~~~n  341 (347)
T d1z45a2         306 LNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTEN  341 (347)
T ss_dssp             CCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHC
T ss_pred             CEeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHhC
Confidence            667789999988 99999999999999999999987

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.6e-43  Score=306.64  Aligned_cols=289  Identities=16%  Similarity=0.175  Sum_probs=216.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      .|||||||||||||++|+++|+++|+.|+++++..                      +.|+.|.+.+.++++  ++|.|+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~----------------------~~~~~~~~~~~~~~~~~~~d~v~   59 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD----------------------ELNLLDSRAVHDFFASERIDQVY   59 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT----------------------TCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch----------------------hccccCHHHHHHHHhhcCCCEEE
Confidence            57999999999999999999999999887664332                      248888888888775  689999


Q ss_pred             EecccCCCC--CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           83 HLATPMDFE--SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        83 ~~a~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |+|+.....  ......+++..|+.++.+|+++|.+.+ +++|||+||.++||  .....+++|+.+...    .+..|.
T Consensus        60 ~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-v~~~i~~SS~~vyg--~~~~~~~~E~~~~~~----~~~~~~  132 (315)
T d1e6ua_          60 LAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQND-VNKLLFLGSSCIYP--KLAKQPMAESELLQG----TLEPTN  132 (315)
T ss_dssp             ECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEECCGGGSC--TTCCSSBCGGGTTSS----CCCGGG
T ss_pred             EcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcC-CCEEEEECCceEcC--CCCCCCccCCccccC----CCCCCC
Confidence            999765421  112234678899999999999999999 99999999999998  455556777653221    133456


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh--hHH----H--hhhhcccCC-CCCCCCCC-Ccccc
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP--SLI----T--ALSPITRNE-AHYPIIKQ-GQFVH  230 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~--~~~----~--~~~~~~~~~-~~~~~~~~-~~~i~  230 (338)
                      ++|+.+|.++|++++.+++++|++++++||+++|||+.......  ...    .  ......+.. ...+.+.. ++++|
T Consensus       133 ~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~  212 (315)
T d1e6ua_         133 EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLH  212 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEE
Confidence            78999999999999999999999999999999999986543221  111    0  111112222 22333333 78999


Q ss_pred             HHHHHHHHHHhhcCCC---------CCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccccccchhhhhhc
Q 040253          231 LDDLCSAHIFLFEHPN---------AKGRYIC-SSHPATILELAKFLREKYPEFNVPTEFEDVDENMKNMLFSSKKLTDL  300 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~---------~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  300 (338)
                      ++|+++++..+++...         ..+.++. .+.+.++.++++.+.+.++...........+........|++++++|
T Consensus       213 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k~L  292 (315)
T d1e6ua_         213 VDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQL  292 (315)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHHT
T ss_pred             eehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHHHc
Confidence            9999999999986532         2335666 56889999999999998875322222222344555567899999899


Q ss_pred             CCcccccHHHHHHHHHHHHHHc
Q 040253          301 GFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       301 g~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ||+|+++++|+|+++++||+++
T Consensus       293 g~~p~~~l~e~i~~ti~w~~~N  314 (315)
T d1e6ua_         293 GWYHEISLEAGLASTYQWFLEN  314 (315)
T ss_dssp             TCCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHc
Confidence            9999999999999999999975

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.3e-42  Score=306.17  Aligned_cols=306  Identities=16%  Similarity=0.140  Sum_probs=227.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc--HHHHHHHhcCC--CCCCcEEEEecccCCCCCchhhhC--Cc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN--KKKVKHLLELP--KASTHLTLWKADLAEEGNFDEPIR--GC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~--~~   78 (338)
                      .|++||||||||||+||+++|+++||+|++++|..+.  ...+..+....  .....++++.+|+++.+.+.+.++  ++
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~   80 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP   80 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence            3789999999999999999999999999999995432  11111111111  112568899999999999988875  78


Q ss_pred             cEEEEecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCC----CccEEEEecCceeeeccCCCCCCcCCCCCCchhhh
Q 040253           79 TGVFHLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAK----TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFV  153 (338)
Q Consensus        79 d~vi~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~  153 (338)
                      |+|||+|+..... ..+.+...+..|+.++.+++++++...    ...++++.||..+++   .....++|++       
T Consensus        81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~---~~~~~~~E~~-------  150 (339)
T d1n7ha_          81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFG---STPPPQSETT-------  150 (339)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGT---TSCSSBCTTS-------
T ss_pred             chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecc---cCCCCCCCCC-------
Confidence            9999999975521 112344778999999999999987542    145788888887774   4456788887       


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChh-HHH-hhhhcccCC-C-CCCCCCC-Ccc
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPS-LIT-ALSPITRNE-A-HYPIIKQ-GQF  228 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~-~~~-~~~~~~~~~-~-~~~~~~~-~~~  228 (338)
                        +..|.+.|+.+|..+|.++..+++.++++++++||+++|||+........ +.. ......+.. . ..+.+.+ +++
T Consensus       151 --~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~  228 (339)
T d1n7ha_         151 --PFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQASRDW  228 (339)
T ss_dssp             --CCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEESCTTCEEEC
T ss_pred             --CCCCcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEeCCCCccccc
Confidence              55689999999999999999999999999999999999999865543222 211 112222322 2 2333333 789


Q ss_pred             ccHHHHHHHHHHhhcCCCCCCceEEecCCCCHHHHHHHHHHhCCCCCCCC-C---CCCccccccccccchhhhhh-cCCc
Q 040253          229 VHLDDLCSAHIFLFEHPNAKGRYICSSHPATILELAKFLREKYPEFNVPT-E---FEDVDENMKNMLFSSKKLTD-LGFK  303 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~~~~~~~~~~~~~~t~~e~~~~i~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~-lg~~  303 (338)
                      +|++|+++++..+++++...+.+++.+...++.++++.+.+.++...... .   ....+........|++++++ |||+
T Consensus       229 ~~v~D~a~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~  308 (339)
T d1n7ha_         229 GFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWK  308 (339)
T ss_dssp             EEHHHHHHHHHHHHTSSSCCEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCC
T ss_pred             eeeehHHHHHHHHHhcCCCCccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCC
Confidence            99999999999999998766566678888999999999999987432111 1   11123445566779999987 9999


Q ss_pred             ccccHHHHHHHHHHHHHHc
Q 040253          304 FKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       304 ~~~~~~~~i~~~~~~~~~~  322 (338)
                      |+++++++|+++++|+.+.
T Consensus       309 P~~~le~gi~~ti~~~~~~  327 (339)
T d1n7ha_         309 PQVGFEKLVKMMVDEDLEL  327 (339)
T ss_dssp             CCSCHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998653

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.8e-42  Score=311.74  Aligned_cols=314  Identities=15%  Similarity=0.165  Sum_probs=222.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC---------------C--CcHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRD---------------P--DNKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      +|||||||||||||++|+++|+++||+|++++.-               +  .....+......  ..++++++.+|++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL--TGKSIELYVGDICD   78 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH--HCCCCEEEESCTTS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhh--cCCCcEEEEccCCC
Confidence            5899999999999999999999999999998610               0  111111111000  01578999999999


Q ss_pred             CCCchhhhC--CccEEEEecccCCCC----CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCC
Q 040253           68 EGNFDEPIR--GCTGVFHLATPMDFE----SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        68 ~~~~~~~~~--~~d~vi~~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                      .+.+.++++  ++|+|||+||.....    .......++..|+.++.+++++|++.+..++++++||..+|+...   .+
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~---~~  155 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN---ID  155 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS---SC
T ss_pred             HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccc---cc
Confidence            999999987  679999999865411    112233578899999999999999988566788888888886222   12


Q ss_pred             cCCCCCC-----chhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCC--------------
Q 040253          142 YDETSWS-----DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSM--------------  202 (338)
Q Consensus       142 ~~e~~~~-----~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~--------------  202 (338)
                      ..|....     ..+....+..|.++|+.+|+++|.+++.++++++++++++||+++|||+.....              
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~  235 (393)
T d1i24a_         156 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAV  235 (393)
T ss_dssp             BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTT
T ss_pred             cccccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccc
Confidence            2221100     001111245688899999999999999999999999999999999999754311              


Q ss_pred             -ChhHHHh-hhhcccCCC-CCCCCCC-CccccHHHHHHHHHHhhcCCCCCCceE---EecCCCCHHHHHHHHHHhCCCCC
Q 040253          203 -PPSLITA-LSPITRNEA-HYPIIKQ-GQFVHLDDLCSAHIFLFEHPNAKGRYI---CSSHPATILELAKFLREKYPEFN  275 (338)
Q Consensus       203 -~~~~~~~-~~~~~~~~~-~~~~~~~-~~~i~v~D~a~~~~~~l~~~~~~~~~~---~~~~~~t~~e~~~~i~~~~~~~~  275 (338)
                       ...+... .....+++. .++.+.+ ++|+|++|+++++..++++....+.|+   .+++.+|+.|+++.+.+..+...
T Consensus       236 ~~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~  315 (393)
T d1i24a_         236 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLG  315 (393)
T ss_dssp             TCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTT
T ss_pred             cccchhhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhC
Confidence             1111111 223334443 3344544 789999999999999999887777553   35577999999999988754322


Q ss_pred             CCCCC-----CCccccccccccchhhhhhcCCcccccHHHHHHHHHHHHHHcC
Q 040253          276 VPTEF-----EDVDENMKNMLFSSKKLTDLGFKFKYSLDDMFTGAVDTCRAKG  323 (338)
Q Consensus       276 ~~~~~-----~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~i~~~~~~~~~~~  323 (338)
                      .....     +..+....++..|++++++|||+|+++++++|+++++|++++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k  368 (393)
T d1i24a_         316 LDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFK  368 (393)
T ss_dssp             CCCCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTG
T ss_pred             CCcceeeccCCCCCCCccEecCCHHHHHHcCCccccCHHHHHHHHHHHHHHHH
Confidence            22111     1123445567788999988999999999999999999998753

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=100.00  E-value=3.3e-41  Score=299.00  Aligned_cols=313  Identities=26%  Similarity=0.406  Sum_probs=231.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+||||||+||||++|+++|+++|++|++++|+..+...+...............+.+|+.|.+.+.+++.++|+|+|
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            46899999999999999999999999999999998766665554443333334566788999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCC--CCCcCCCCCCchhhh-------h
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHR--KPVYDETSWSDLDFV-------R  154 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~--~~~~~e~~~~~~~~~-------~  154 (338)
                      +++.....  .....++..|+.++.+++++|.+.+.+++|||+||..+++...+.  ....+|..|+.....       .
T Consensus        90 ~a~~~~~~--~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~  167 (342)
T d1y1pa1          90 IASVVSFS--NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPES  167 (342)
T ss_dssp             CCCCCSCC--SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTT
T ss_pred             hccccccc--ccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccccccc
Confidence            99976643  334577889999999999999887548999999998665422222  334455555433221       1


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCCh-hHHHh-hhhcccCCCC-CCCCCCCccc
Q 040253          155 SVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPP-SLITA-LSPITRNEAH-YPIIKQGQFV  229 (338)
Q Consensus       155 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~~~~~~i  229 (338)
                      .+..|.+.|+.+|..+|.+++.+++++  +++++++||+.+|||...+.... ..... .....+.... ......++|+
T Consensus       168 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~v  247 (342)
T d1y1pa1         168 DPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYYV  247 (342)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHHHTCCSEEEE
T ss_pred             CCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCcccCCccceeee
Confidence            234466789999999999999998886  47788999999999975543322 22222 2233333322 2233336799


Q ss_pred             cHHHHHHHHHHhhcCCCCCCceE-EecCCCCHHHHHHHHHHhCCCCCCCCCCCCccccccc--cccchhhhhhcCCcccc
Q 040253          230 HLDDLCSAHIFLFEHPNAKGRYI-CSSHPATILELAKFLREKYPEFNVPTEFEDVDENMKN--MLFSSKKLTDLGFKFKY  306 (338)
Q Consensus       230 ~v~D~a~~~~~~l~~~~~~~~~~-~~~~~~t~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~  306 (338)
                      |++|+|++++.+++++...+.|+ ++++.+|+.|++++|.+.+|...++..+.........  ...+.++++.|||++.+
T Consensus       248 ~v~Dva~~~i~~l~~~~~~g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~~~~~~~~~s~~~~k~lg~~~~~  327 (342)
T d1y1pa1         248 SAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWR  327 (342)
T ss_dssp             EHHHHHHHHHHHHHCTTCCSCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCCCCEECCHHHHHHHHHTTCCSCC
T ss_pred             eHHHHHHHHHHhhcCccccceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcccccccchHHHHHHHHcCCCCCc
Confidence            99999999999999888777665 4678899999999999999877776655433222222  22344556669999999


Q ss_pred             cHHHHHHHHHHH
Q 040253          307 SLDDMFTGAVDT  318 (338)
Q Consensus       307 ~~~~~i~~~~~~  318 (338)
                      +++++|+++++-
T Consensus       328 ~lee~i~d~I~s  339 (342)
T d1y1pa1         328 SIEESIKDLVGS  339 (342)
T ss_dssp             CHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHh
Confidence            999999999863

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=3.8e-41  Score=303.21  Aligned_cols=307  Identities=21%  Similarity=0.218  Sum_probs=223.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHH-CCCeEEEEEc---------CCCcHHHHHH-HhcC-----CCCCCcEEEEecccCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLE-RGYAVRATVR---------DPDNKKKVKH-LLEL-----PKASTHLTLWKADLAEE   68 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r---------~~~~~~~~~~-~~~~-----~~~~~~~~~~~~Dl~d~   68 (338)
                      .|||||||||||||++|+++|++ .|++|+++++         .....+.... +...     .....++.++.+|++|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            46999999999999999999986 6899999974         1111221111 1111     11235689999999999


Q ss_pred             CCchhhhC---CccEEEEecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCC-----C
Q 040253           69 GNFDEPIR---GCTGVFHLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHR-----K  139 (338)
Q Consensus        69 ~~~~~~~~---~~d~vi~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~-----~  139 (338)
                      +.+.++++   ++|+|||+|+.... .........++.|+.++.+++++++..+ +++++++||.++|+.....     .
T Consensus        82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHK-CDKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccC-Ccccccccccccccccccccccccc
Confidence            98888875   67999999997552 1222344678999999999999999999 8999999999998733222     1


Q ss_pred             CCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCCh-----------hHHH
Q 040253          140 PVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPP-----------SLIT  208 (338)
Q Consensus       140 ~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~-----------~~~~  208 (338)
                      .++.|++         +..|.++|+.+|+.+|++++.+.+.+|++++++||+++|||+.......           .+..
T Consensus       161 ~~~~e~~---------~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~  231 (383)
T d1gy8a_         161 EPIDINA---------KKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGR  231 (383)
T ss_dssp             CCBCTTS---------CCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHH
T ss_pred             ccccccc---------CCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHH
Confidence            2334443         5568999999999999999999999999999999999999987653221           1111


Q ss_pred             hhhh-c-------------------ccCCCCCCCCCC-CccccHHHHHHHHHHhhcC---------CCCCCceEE-ecCC
Q 040253          209 ALSP-I-------------------TRNEAHYPIIKQ-GQFVHLDDLCSAHIFLFEH---------PNAKGRYIC-SSHP  257 (338)
Q Consensus       209 ~~~~-~-------------------~~~~~~~~~~~~-~~~i~v~D~a~~~~~~l~~---------~~~~~~~~~-~~~~  257 (338)
                      .+.. .                   .+.....+++.+ ++|+|++|+|+++..+++.         ....++||+ ++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~~~  311 (383)
T d1gy8a_         232 VMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTSRG  311 (383)
T ss_dssp             HHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCSCC
T ss_pred             HHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCccEEEeCCCCc
Confidence            1100 0                   011111223343 6899999999999999863         112347888 5688


Q ss_pred             CCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh-cCCcccccHHHHHHHH-HHHHHHc
Q 040253          258 ATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTGA-VDTCRAK  322 (338)
Q Consensus       258 ~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~~-~~~~~~~  322 (338)
                      +|+.|+++.+.+.+|. +.+.. ....+.+.....+|++++++ |||+|+++++|+|+++ +.|++.+
T Consensus       312 ~s~~el~~~i~~~~~~-~~~~~~~~~~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~  378 (383)
T d1gy8a_         312 YSVREVIEVARKTTGH-PIPVRECGRREGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTH  378 (383)
T ss_dssp             EEHHHHHHHHHHHHCC-CCCEEEECCCTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTC
T ss_pred             eeHHHHHHHHHHHhCC-CCceEECCCCCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhC
Confidence            9999999999998874 33332 22234456677889999998 9999999999999887 5888875

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=100.00  E-value=1.4e-39  Score=290.06  Aligned_cols=304  Identities=16%  Similarity=0.146  Sum_probs=220.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      +|||||||||||||++|+++|+++|++|++++|+..+...+......   .++++++.+|++|++.+.++++  .+|+|+
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~---~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc---ccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence            69999999999999999999999999999999977654433222221   1579999999999999988886  689999


Q ss_pred             EecccCCC-CCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           83 HLATPMDF-ESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        83 ~~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      |+|+.... ...+.+...+..|+.++.+++++++..+..+.+++.||..+++ ......+.+|++         +..|.+
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~---------~~~p~~  154 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYD-NKEWIWGYRENE---------AMGGYD  154 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBC-CCCSSSCBCTTS---------CBCCSS
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhcccccccccccccccccc-cccccccccccc---------ccCCCC
Confidence            99986542 1123345788999999999999999877456666666665553 333344555655         445788


Q ss_pred             hHHHHHHHHHHHHHHHHHH---------cCccEEEEcCCceeCCCCCCCCChhHHHhhhhc-ccCCCCCCCCCC-Ccccc
Q 040253          162 MYFVSKTLAEQAAWKFAEE---------NNIDFISIIPSLVVGPFLTSSMPPSLITALSPI-TRNEAHYPIIKQ-GQFVH  230 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~---------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~  230 (338)
                      +|+.+|...|..+..++.+         +++.++++||+++|||++.... ..+..+.... .+....+..+.+ ++++|
T Consensus       155 ~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (356)
T d1rkxa_         155 PYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALD-RIVPDILRAFEQSQPVIIRNPHAIRPWQH  233 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSS-CHHHHHHHHHHTTCCEECSCTTCEECCEE
T ss_pred             ccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhh-HHHHHHHHHHhCCCceEEeeccccccccc
Confidence            9999999999999887763         4688999999999999864321 2222222222 233333444443 77999


Q ss_pred             HHHHHHHHHHhhcCCCCCC-----ceEE---ecCCCCHHHHHHHHHHhCCCCC-CCCCCCCccccccccccchhhhhh-c
Q 040253          231 LDDLCSAHIFLFEHPNAKG-----RYIC---SSHPATILELAKFLREKYPEFN-VPTEFEDVDENMKNMLFSSKKLTD-L  300 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~~~~-----~~~~---~~~~~t~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-l  300 (338)
                      ++|+++++..++.+....+     ..+.   ....+++.++++.+.+.++... ........+.+......|++++++ |
T Consensus       234 v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~L  313 (356)
T d1rkxa_         234 VLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQL  313 (356)
T ss_dssp             THHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHH
T ss_pred             cccccchhhhhhhhhcccccccccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHH
Confidence            9999999999987654332     2222   2466899999999999887421 111122234556667889999987 9


Q ss_pred             CCcccccHHHHHHHHHHHHHHc
Q 040253          301 GFKFKYSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       301 g~~~~~~~~~~i~~~~~~~~~~  322 (338)
                      ||+|+++++++|+++++||++.
T Consensus       314 Gw~P~~~l~egi~~ti~wyk~~  335 (356)
T d1rkxa_         314 GWHPRWNLNTTLEYIVGWHKNW  335 (356)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999863

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=2e-39  Score=286.86  Aligned_cols=308  Identities=17%  Similarity=0.145  Sum_probs=218.1

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC--CCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEE
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRD--PDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVF   82 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi   82 (338)
                      ||||||||||||++|+++|+++|++|+++++-  ......+..+...    ++++++.+|++|.+.+.++++  ++|+||
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~----~~~~~i~~Di~~~~~l~~~~~~~~~d~Vi   77 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL----GNFEFVHGDIRNKNDVTRLITKYMPDSCF   77 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhcc----CCcEEEEcccCCHHHHHHHHHhcCCceEE
Confidence            79999999999999999999999999998752  2222323333222    589999999999999999987  579999


Q ss_pred             EecccCCCC-CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCC-------chhhhh
Q 040253           83 HLATPMDFE-SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS-------DLDFVR  154 (338)
Q Consensus        83 ~~a~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~-------~~~~~~  154 (338)
                      |+|+..... ...+....+++|+.++.+|++++...+ ++++++.||.++++.... ..+..+.+..       ......
T Consensus        78 h~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~-~~~~i~~sS~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  155 (338)
T d1orra_          78 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYN-SNCNIIYSSTNKVYGDLE-QYKYNETETRYTCVDKPNGYDES  155 (338)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEEEEGGGGTTCT-TSCEEECSSCEEETTCTTCBCTT
T ss_pred             eecccccccccccChHHHHHHHHHHHHHHHHhhhccc-cccccccccccccccccc-ccccccccccccccccccCcccC
Confidence            999976521 122335788999999999999999988 666666666555542221 1111111100       000011


Q ss_pred             hccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhH-----HHhhhhc--ccCCC-CCCCCCC-
Q 040253          155 SVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSL-----ITALSPI--TRNEA-HYPIIKQ-  225 (338)
Q Consensus       155 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~-----~~~~~~~--~~~~~-~~~~~~~-  225 (338)
                      .+..|.+.|+.+|...|.++..+.+.+++...++|++++||+..........     ...+...  .+++. .++.+.+ 
T Consensus       156 ~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~  235 (338)
T d1orra_         156 TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISGNGKQV  235 (338)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEESSSCCE
T ss_pred             CccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEeCCCcee
Confidence            2345788999999999999999999999999999999999876544322111     1111111  12222 2334433 


Q ss_pred             CccccHHHHHHHHHHhhcCCC--CCCceEEe---cCCCCHHHHHHHHHHhCCCCCCCCC-CCCccccccccccchhhhhh
Q 040253          226 GQFVHLDDLCSAHIFLFEHPN--AKGRYICS---SHPATILELAKFLREKYPEFNVPTE-FEDVDENMKNMLFSSKKLTD  299 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~~~--~~~~~~~~---~~~~t~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  299 (338)
                      ++|+|++|+++++..++++..  .+++|++.   +..+++.|+++.+.+..+. +.+.. ....+.+......|++++++
T Consensus       236 r~~~~v~D~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~d~~k~~~  314 (338)
T d1orra_         236 RDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNSLSLLELFKLLEDYCNI-DMRFTNLPVRESDQRVFVADIKKITN  314 (338)
T ss_dssp             EECEEHHHHHHHHHHHHHTHHHHTTCEEEESSCGGGEEEHHHHHHHHHHHHTC-CCCEEEECCCSSCCSEECBCCHHHHH
T ss_pred             EeeecccchhhHHHHHHhccccccCccccccccccccccHHHHHHHHHHHHCC-CceeEeCCCCCCCcCeeeECHHHHHH
Confidence            789999999999999997643  35678762   3668999999999998764 22222 22224445556779999987


Q ss_pred             -cCCcccccHHHHHHHHHHHHHH
Q 040253          300 -LGFKFKYSLDDMFTGAVDTCRA  321 (338)
Q Consensus       300 -lg~~~~~~~~~~i~~~~~~~~~  321 (338)
                       |||+|+++++++|+++++|++.
T Consensus       315 ~Lg~~p~~sl~e~i~~ti~W~k~  337 (338)
T d1orra_         315 AIDWSPKVSAKDGVQKMYDWTSS  337 (338)
T ss_dssp             HHCCCCCSCHHHHHHHHHHHHHH
T ss_pred             HHCCCcCCCHHHHHHHHHHHHHc
Confidence             9999999999999999999985

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=100.00  E-value=4.2e-36  Score=258.62  Aligned_cols=268  Identities=15%  Similarity=0.066  Sum_probs=203.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |||||||||||||++|+++|.++|++|++++|+.                       +|++|.+++.++++  ++|+|||
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~-----------------------~D~~d~~~~~~~l~~~~~d~vih   58 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD-----------------------LDITNVLAVNKFFNEKKPNVVIN   58 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT-----------------------CCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh-----------------------ccCCCHHHHHHHHHHcCCCEEEe
Confidence            6899999999999999999999999999998752                       48889888888886  7899999


Q ss_pred             ecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +|+... .............|+.....+.+.+....  ..+++.||..+|+  .....+.+|.+         +..|.+.
T Consensus        59 ~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~--~~~~~~ss~~v~~--~~~~~~~~e~~---------~~~~~~~  125 (281)
T d1vl0a_          59 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG--AEIVQISTDYVFD--GEAKEPITEFD---------EVNPQSA  125 (281)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGSC--SCCSSCBCTTS---------CCCCCSH
T ss_pred             eccccccccccccchhhccccccccccccccccccc--ccccccccceeee--ccccccccccc---------cccchhh
Confidence            998654 11222334667888989988888888776  6788899999987  55567778877         5568889


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLF  242 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  242 (338)
                      |+.+|..+|++++    +++.+++++||+++||++...  ...+.  .....+..........++++|++|+++++..++
T Consensus       126 ~~~~k~~~e~~~~----~~~~~~~i~R~~~vyG~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~  197 (281)
T d1vl0a_         126 YGKTKLEGENFVK----ALNPKYYIVRTAWLYGDGNNF--VKTMI--NLGKTHDELKVVHDQVGTPTSTVDLARVVLKVI  197 (281)
T ss_dssp             HHHHHHHHHHHHH----HHCSSEEEEEECSEESSSSCH--HHHHH--HHHHHCSEEEEESSCEECCEEHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHH----HhCCCccccceeEEeCCCccc--ccchh--hhhccCCceeecCCceeccchhhhhhhhhhhhh
Confidence            9999999998885    458899999999999997431  11111  111223222222233378999999999999999


Q ss_pred             cCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCC---CCCCccc---cccccccchhhhhh-cCCcccccHHHHHHH
Q 040253          243 EHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPT---EFEDVDE---NMKNMLFSSKKLTD-LGFKFKYSLDDMFTG  314 (338)
Q Consensus       243 ~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~  314 (338)
                      ++.. .|.||+ +++.+|+.|+++.+++.+|.. .++   .....+.   .+.+..+|++++++ +||+|+ +++++|++
T Consensus       198 ~~~~-~g~~~~~~~~~~s~~e~~~~i~~~~g~~-~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~~~~~l~~  274 (281)
T d1vl0a_         198 DEKN-YGTFHCTCKGICSWYDFAVEIFRLTGID-VKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKE  274 (281)
T ss_dssp             HHTC-CEEEECCCBSCEEHHHHHHHHHHHHCCC-CEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHH
T ss_pred             hhcc-cCceeEeCCCccchHHHHHHHHHHhCCC-ceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-CHHHHHHH
Confidence            8865 468876 678899999999999998742 211   1111111   12334579999998 999999 99999999


Q ss_pred             HHHHHH
Q 040253          315 AVDTCR  320 (338)
Q Consensus       315 ~~~~~~  320 (338)
                      ++++++
T Consensus       275 ~l~~l~  280 (281)
T d1vl0a_         275 YIDLLQ  280 (281)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999985

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-34  Score=252.15  Aligned_cols=292  Identities=15%  Similarity=0.125  Sum_probs=187.7

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEE-ecccCCCCCchhhhCCccEEEEec
Q 040253            8 VCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLW-KADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |||||||||||++|+++|+++|+ +|+++++-...... ..+....    -.... ..|+.+.......+..+++|+|+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~a   76 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-VNLVDLN----IADYMDKEDFLIQIMAGEEFGDVEAIFHEG   76 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG-HHHHTSC----CSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh-hcccccc----hhhhccchHHHHHHhhhhcccchhhhhhhc
Confidence            89999999999999999999995 78888643322111 1111110    00110 111111111112334689999999


Q ss_pred             ccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHH
Q 040253           86 TPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFV  165 (338)
Q Consensus        86 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~  165 (338)
                      +...... .+.......|+.++.+++++++..+ ++ +++.||..+++  .......+|+.         +..|.+.|+.
T Consensus        77 a~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-i~-~v~~ss~~~~~--~~~~~~~~~~~---------~~~~~~~Y~~  142 (307)
T d1eq2a_          77 ACSSTTE-WDGKYMMDNNYQYSKELLHYCLERE-IP-FLYASSAATYG--GRTSDFIESRE---------YEKPLNVYGY  142 (307)
T ss_dssp             SCCCTTC-CCHHHHHHHTHHHHHHHHHHHHHHT-CC-EEEEEEGGGGT--TCCSCBCSSGG---------GCCCSSHHHH
T ss_pred             ccccccc-ccccccccccccccccccccccccc-cc-ccccccccccc--ccccccccccc---------cccccccccc
Confidence            8655443 3445778888999999999999988 65 67777777775  33333334433         4467889999


Q ss_pred             HHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCC--CChhHHHhhhh-cccCCCCC--CCCCC-CccccHHHHHHHHH
Q 040253          166 SKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSS--MPPSLITALSP-ITRNEAHY--PIIKQ-GQFVHLDDLCSAHI  239 (338)
Q Consensus       166 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~-~~~~~~~~--~~~~~-~~~i~v~D~a~~~~  239 (338)
                      +|..+|.++..++++++++++++||+++|||+....  ........... ..++....  +.+.. ++|+|++|+++++.
T Consensus       143 ~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~  222 (307)
T d1eq2a_         143 SKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNL  222 (307)
T ss_dssp             HHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHH
T ss_pred             ccchhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeecCccceeeeeeecccHHHHHH
Confidence            999999999999999999999999999999976432  11112122222 22333222  22222 68999999999999


Q ss_pred             HhhcCCCCCCceEE-ecCCCCHHHHHHHHHHhCCCCCCCCC-CCC--ccccccccccchhhhhh-cCCcccccHHHHHHH
Q 040253          240 FLFEHPNAKGRYIC-SSHPATILELAKFLREKYPEFNVPTE-FED--VDENMKNMLFSSKKLTD-LGFKFKYSLDDMFTG  314 (338)
Q Consensus       240 ~~l~~~~~~~~~~~-~~~~~t~~e~~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~-lg~~~~~~~~~~i~~  314 (338)
                      .++++.. .+.||+ ++.+.|++|+++.+.+..+...+... ...  ..........|++++++ +||+|+++++|+|++
T Consensus       223 ~~~~~~~-~~~~~~~~~~~~si~~i~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~  301 (307)
T d1eq2a_         223 WFLENGV-SGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTE  301 (307)
T ss_dssp             HHHHHCC-CEEEEESCSCCBCHHHHHHHC---------------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHH
T ss_pred             HHhhhcc-ccccccccccchhHHHHHHHHHHhcCCCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHH
Confidence            9998754 567877 67899999999999887654333221 111  11223334568899988 899999999999999


Q ss_pred             HHHHH
Q 040253          315 AVDTC  319 (338)
Q Consensus       315 ~~~~~  319 (338)
                      +++|+
T Consensus       302 ~i~w~  306 (307)
T d1eq2a_         302 YMAWL  306 (307)
T ss_dssp             HHHHT
T ss_pred             HHHhC
Confidence            99996

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=100.00  E-value=2e-33  Score=243.63  Aligned_cols=276  Identities=12%  Similarity=0.061  Sum_probs=195.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      |||||||||||||++|+++|.++|+. ++++++...                   +.+|++|.+.+.++++  ++|+|||
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~~~-------------------~~~Dl~~~~~~~~~i~~~~~D~Vih   60 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNL-IALDVHSKE-------------------FCGDFSNPKGVAETVRKLRPDVIVN   60 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEE-EEECTTCSS-------------------SCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCE-EEEECCCcc-------------------ccCcCCCHHHHHHHHHHcCCCEEEE
Confidence            68999999999999999999988874 445554321                   2479999999988887  6799999


Q ss_pred             ecccCC-CCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           84 LATPMD-FESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        84 ~a~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +||... ......+...+..|+.++.+|+++++..+  .+++++||+.+|+  .....+++|.+         +..|.+.
T Consensus        61 ~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~ss~~~~~--~~~~~~~~E~~---------~~~p~~~  127 (298)
T d1n2sa_          61 AAAHTAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHYSTDYVFP--GTGDIPWQETD---------ATSPLNV  127 (298)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEEEEGGGSC--CCTTCCBCTTS---------CCCCSSH
T ss_pred             ecccccccccccCccccccccccccccchhhhhccc--ccccccccccccc--CCCCCCCcccc---------ccCCCch
Confidence            998655 22234445788999999999999999887  5799999999987  55667788887         5568899


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLF  242 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l  242 (338)
                      |+.+|..+|+.+..+    .....++|++..++...... ...+..  ....+...........+++|++|+++++..++
T Consensus       128 y~~~k~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i  200 (298)
T d1n2sa_         128 YGKTKLAGEKALQDN----CPKHLIFRTSWVYAGKGNNF-AKTMLR--LAKERQTLSVINDQYGAPTGAELLADCTAHAI  200 (298)
T ss_dssp             HHHHHHHHHHHHHHH----CSSEEEEEECSEECSSSCCH-HHHHHH--HHHHCSEEEEECSCEECCEEHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhHHhh----hcccccccccceeeccCCcc-chhhhh--hhcccceeecccceeecccccchHHHHHHHHH
Confidence            999999999988653    34556677666664432211 111111  11112222222233367999999999998887


Q ss_pred             c----CCCCCCceEEe-cCCCCHHHHHHHHHHhCCCCCCCCCC--------CCcccc---ccccccchhhhhh-cCCccc
Q 040253          243 E----HPNAKGRYICS-SHPATILELAKFLREKYPEFNVPTEF--------EDVDEN---MKNMLFSSKKLTD-LGFKFK  305 (338)
Q Consensus       243 ~----~~~~~~~~~~~-~~~~t~~e~~~~i~~~~~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~-lg~~~~  305 (338)
                      .    .....++||++ ++.++..++++.+.+..+........        ...+..   +....+|++|+++ +||+|+
T Consensus       201 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~  280 (298)
T d1n2sa_         201 RVALNKPEVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP  280 (298)
T ss_dssp             HHHHHCGGGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC
T ss_pred             hhhhccccccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCC
Confidence            5    34456789985 57899999999988754321111111        111111   2234579999988 999998


Q ss_pred             ccHHHHHHHHHHHHHHc
Q 040253          306 YSLDDMFTGAVDTCRAK  322 (338)
Q Consensus       306 ~~~~~~i~~~~~~~~~~  322 (338)
                       +++++|+++++++...
T Consensus       281 -~~~~gl~~~i~~~~~~  296 (298)
T d1n2sa_         281 -QWELGVKRMLTEMFTT  296 (298)
T ss_dssp             -BHHHHHHHHHHHHHSC
T ss_pred             -cHHHHHHHHHHHHHhh
Confidence             9999999999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=218.10  Aligned_cols=208  Identities=16%  Similarity=0.145  Sum_probs=158.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ++|+|||||||||||++++++|+++|+  +|++++|++.......        ..+++...+|+.+.+.+.++++++|+|
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~--------~~~i~~~~~D~~~~~~~~~~~~~~d~v   84 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--------YKNVNQEVVDFEKLDDYASAFQGHDVG   84 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--------GGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc--------cceeeeeeecccccccccccccccccc
Confidence            357999999999999999999999984  8999999765432111        157888899999999999999999999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      ||+++....  .....++.+.|+.++.+++++|.+.+ +++|||+||..++.                        .+.+
T Consensus        85 i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~-v~~fi~~Ss~~~~~------------------------~~~~  137 (232)
T d2bkaa1          85 FCCLGTTRG--KAGAEGFVRVDRDYVLKSAELAKAGG-CKHFNLLSSKGADK------------------------SSNF  137 (232)
T ss_dssp             EECCCCCHH--HHHHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT------------------------TCSS
T ss_pred             ccccccccc--ccchhhhhhhcccccceeeecccccC-ccccccCCcccccc------------------------Cccc
Confidence            999985431  12334778999999999999999999 99999999987763                        1345


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCcc-EEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNID-FISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  240 (338)
                      .|+.+|..+|+.+.    +.+++ ++|+||+.+||++........+   .....+.  ..........|+++|+|++++.
T Consensus       138 ~Y~~~K~~~E~~l~----~~~~~~~~IlRP~~i~G~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~I~~~dvA~a~i~  208 (232)
T d2bkaa1         138 LYLQVKGEVEAKVE----ELKFDRYSVFRPGVLLCDRQESRPGEWL---VRKFFGS--LPDSWASGHSVPVVTVVRAMLN  208 (232)
T ss_dssp             HHHHHHHHHHHHHH----TTCCSEEEEEECCEEECTTGGGSHHHHH---HHHHHCS--CCTTGGGGTEEEHHHHHHHHHH
T ss_pred             hhHHHHHHhhhccc----cccccceEEecCceeecCCCcCcHHHHH---HHHHhhc--cCCcccCCCeEEHHHHHHHHHH
Confidence            89999999999885    35764 8999999999987553211111   1111111  1111122458999999999999


Q ss_pred             hhcCCCCCCceEEec
Q 040253          241 LFEHPNAKGRYICSS  255 (338)
Q Consensus       241 ~l~~~~~~~~~~~~~  255 (338)
                      ++.++..++.+++++
T Consensus       209 ~~~~~~~~~~~i~~~  223 (232)
T d2bkaa1         209 NVVRPRDKQMELLEN  223 (232)
T ss_dssp             HHTSCCCSSEEEEEH
T ss_pred             HHhcCccCCeEEEcH
Confidence            998887777777754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-29  Score=208.03  Aligned_cols=200  Identities=17%  Similarity=0.165  Sum_probs=152.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .||||+||||||+||++++++|+++|++|++++|++++....        ...+++++.+|++|.+++.++++++|+|||
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~gD~~d~~~l~~al~~~d~vi~   73 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE--------GPRPAHVVVGDVLQAADVDKTVAGQDAVIV   73 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS--------SCCCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc--------cccccccccccccchhhHHHHhcCCCEEEE
Confidence            378999999999999999999999999999999987653211        125789999999999999999999999999


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchH
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMY  163 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y  163 (338)
                      ++|....      ......+..++.++++++++++ ++|||++||..+++  ....                .......|
T Consensus        74 ~~g~~~~------~~~~~~~~~~~~~l~~aa~~~~-v~r~i~~ss~~~~~--~~~~----------------~~~~~~~~  128 (205)
T d1hdoa_          74 LLGTRND------LSPTTVMSEGARNIVAAMKAHG-VDKVVACTSAFLLW--DPTK----------------VPPRLQAV  128 (205)
T ss_dssp             CCCCTTC------CSCCCHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS--CTTC----------------SCGGGHHH
T ss_pred             EeccCCc------hhhhhhhHHHHHHHHHHHHhcC-CCeEEEEeeeeccC--CCcc----------------cccccccc
Confidence            9986332      1234567889999999999999 99999999988875  1111                11123468


Q ss_pred             HHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhc
Q 040253          164 FVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       164 ~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~  243 (338)
                      ...|..+|++++    +.|++|+++||+.+++....+...              ..........+|+++|+|++++.+++
T Consensus       129 ~~~~~~~e~~l~----~~~~~~tiirp~~~~~~~~~~~~~--------------~~~~~~~~~~~i~~~DvA~~~~~~l~  190 (205)
T d1hdoa_         129 TDDHIRMHKVLR----ESGLKYVAVMPPHIGDQPLTGAYT--------------VTLDGRGPSRVISKHDLGHFMLRCLT  190 (205)
T ss_dssp             HHHHHHHHHHHH----HTCSEEEEECCSEEECCCCCSCCE--------------EESSSCSSCSEEEHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHHH----hcCCceEEEecceecCCCCcccEE--------------EeeCCCCCCCcCCHHHHHHHHHHHhC
Confidence            889999998774    479999999999998754322110              00111122569999999999999999


Q ss_pred             CCCCCC-ceEEe
Q 040253          244 HPNAKG-RYICS  254 (338)
Q Consensus       244 ~~~~~~-~~~~~  254 (338)
                      ++...| .+.++
T Consensus       191 ~~~~~g~~~~~s  202 (205)
T d1hdoa_         191 TDEYDGHSTYPS  202 (205)
T ss_dssp             CSTTTTCEEEEE
T ss_pred             CCCCCCEEEecC
Confidence            877534 44443

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.2e-27  Score=199.34  Aligned_cols=228  Identities=17%  Similarity=0.173  Sum_probs=158.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCe--EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYA--VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .|++|||||||||||++++++|+++|++  |+.+.|++++...+.         .+++++.+|+++.+.+.++++++|+|
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG---------GEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT---------CCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhcc---------CCcEEEEeeeccccccccccccceee
Confidence            5789999999999999999999999965  556667654433211         46799999999999999999999999


Q ss_pred             EEecccCCCC--------------CCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           82 FHLATPMDFE--------------SKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        82 i~~a~~~~~~--------------~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ||+|+.....              ..........+|+.++.++++.+.... .+.+.+.|+..++.  ...  +      
T Consensus        73 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~--~~~--~------  141 (252)
T d2q46a1          73 VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG-VKHIVVVGSMGGTN--PDH--P------  141 (252)
T ss_dssp             EECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT-CSEEEEEEETTTTC--TTC--G------
T ss_pred             EEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccc-ccccccccccccCC--CCc--c------
Confidence            9999753310              011223567788999999999998887 78888888765543  100  0      


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                             ....+...|...+...+.    +..+.+++++++||+++||+......         ...+..... .....+
T Consensus       142 -------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ilRp~~v~g~~~~~~~---------~~~~~~~~~-~~~~~~  200 (252)
T d2q46a1         142 -------LNKLGNGNILVWKRKAEQ----YLADSGTPYTIIRAGGLLDKEGGVRE---------LLVGKDDEL-LQTDTK  200 (252)
T ss_dssp             -------GGGGGGCCHHHHHHHHHH----HHHHSSSCEEEEEECEEECSCTTSSC---------EEEESTTGG-GGSSCC
T ss_pred             -------cccccccchhhhhhhhhh----hhhcccccceeecceEEECCCcchhh---------hhhccCccc-ccCCCC
Confidence                   011123345555555444    34567999999999999999743211         011111111 112257


Q ss_pred             cccHHHHHHHHHHhhcCCCCCC-ceEEec----CCCCHHHHHHHHHHhCC
Q 040253          228 FVHLDDLCSAHIFLFEHPNAKG-RYICSS----HPATILELAKFLREKYP  272 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~~~~~-~~~~~~----~~~t~~e~~~~i~~~~~  272 (338)
                      ++|++|+|++++.+++++...+ +||+++    ...+++|+.+++.+..+
T Consensus       201 ~i~~~Dva~a~~~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~~  250 (252)
T d2q46a1         201 TVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTS  250 (252)
T ss_dssp             EEEHHHHHHHHHHHTTCGGGTTEEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred             eEEHHHHHHHHHHHhCCccccCcEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence            9999999999999999877655 788753    24678888887766543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.94  E-value=6.7e-28  Score=209.76  Aligned_cols=233  Identities=18%  Similarity=0.185  Sum_probs=163.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH--HHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK--KKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ++||||||||||||++++++|+++|++|++++|++...  .....+....  ..+++++.+|++|.+.+.+++.++++++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~v~~v~~d~~d~~~~~~~~~~~~~~~   80 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFK--QLGAKLIEASLDDHQRLVDALKQVDVVI   80 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHH--TTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhc--cCCcEEEEeecccchhhhhhccCcchhh
Confidence            57899999999999999999999999999999975432  2222111111  1578999999999999999999999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      ++++...          ...|.....++++++...+ ..++++.||.+++.   .     .+..         +..|...
T Consensus        81 ~~~~~~~----------~~~~~~~~~~~l~~a~~~~-~~~~v~~Ss~g~~~---~-----~~~~---------~~~~~~~  132 (312)
T d1qyda_          81 SALAGGV----------LSHHILEQLKLVEAIKEAG-NIKRFLPSEFGMDP---D-----IMEH---------ALQPGSI  132 (312)
T ss_dssp             ECCCCSS----------SSTTTTTHHHHHHHHHHSC-CCSEEECSCCSSCT---T-----SCCC---------CCSSTTH
T ss_pred             hhhhhcc----------cccchhhhhHHHHHHHHhc-CCcEEEEeeccccC---C-----Cccc---------ccchhhh
Confidence            9987532          2334555678888888887 56677888755442   1     1111         2234556


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC-CccccHHHHHHHHHHh
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ-GQFVHLDDLCSAHIFL  241 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~D~a~~~~~~  241 (338)
                      |...|..+++.    .+..+++++++||+.+||+............ . ...+....++.+.. ++|+|++|+|++++.+
T Consensus       133 ~~~~~~~~~~~----~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~  206 (312)
T d1qyda_         133 TFIDKRKVRRA----IEAASIPYTYVSSNMFAGYFAGSLAQLDGHM-M-PPRDKVLIYGDGNVKGIWVDEDDVGTYTIKS  206 (312)
T ss_dssp             HHHHHHHHHHH----HHHTTCCBCEEECCEEHHHHTTTSSCTTCCS-S-CCSSEECCBTTSCSEEEEECHHHHHHHHHHH
T ss_pred             hhHHHHHHHHh----hcccccceEEeccceeecCCccchhhHHHHh-h-hcccccccccccccccceeeHHHHHHHHHHH
Confidence            66666666654    4567999999999999997643321111111 1 11122233444433 7799999999999999


Q ss_pred             hcCCCCC-Cc-eEEe-cCCCCHHHHHHHHHHhCCC
Q 040253          242 FEHPNAK-GR-YICS-SHPATILELAKFLREKYPE  273 (338)
Q Consensus       242 l~~~~~~-~~-~~~~-~~~~t~~e~~~~i~~~~~~  273 (338)
                      +.++... +. |+++ ++.+|++|+++.+.+.+|.
T Consensus       207 l~~~~~~~~~~~~~~~~~~~s~~e~~~~~~~~~g~  241 (312)
T d1qyda_         207 IDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQ  241 (312)
T ss_dssp             TTCGGGSSSEEECCCGGGEEEHHHHHHHHHHHHTC
T ss_pred             hcCccccCceEEEeCCCcCCCHHHHHHHHHHHHCC
Confidence            9886654 44 5564 4679999999999998764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=2.1e-27  Score=195.40  Aligned_cols=191  Identities=18%  Similarity=0.114  Sum_probs=136.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh-hhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE-PIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~v   81 (338)
                      .|||||||||||||++++++|+++|+  +|.+++|++...            .+++.....|+   .++.+ +...+|+|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------------~~~~~~~~~d~---~~~~~~~~~~~d~v   66 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------------HPRLDNPVGPL---AELLPQLDGSIDTA   66 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------------CTTEECCBSCH---HHHGGGCCSCCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------------cccccccccch---hhhhhccccchhee
Confidence            58999999999999999999999997  677666654321            13444444443   22223 33468999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGW  161 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~  161 (338)
                      ||++|...... .....+...|+.++.+++++|+..+ +++|+++||..+++                        .+.+
T Consensus        67 i~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~-v~~~i~~Ss~~~~~------------------------~~~~  120 (212)
T d2a35a1          67 FCCLGTTIKEA-GSEEAFRAVDFDLPLAVGKRALEMG-ARHYLVVSALGADA------------------------KSSI  120 (212)
T ss_dssp             EECCCCCHHHH-SSHHHHHHHHTHHHHHHHHHHHHTT-CCEEEEECCTTCCT------------------------TCSS
T ss_pred             eeeeeeecccc-ccccccccchhhhhhhccccccccc-cccccccccccccc------------------------cccc
Confidence            99998543222 2234789999999999999999998 99999999987763                        1345


Q ss_pred             hHHHHHHHHHHHHHHHHHHcCc-cEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHH
Q 040253          162 MYFVSKTLAEQAAWKFAEENNI-DFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIF  240 (338)
Q Consensus       162 ~Y~~sK~~~E~~~~~~~~~~~~-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~  240 (338)
                      .|+.+|..+|+.++    +.++ +++|+||+.+||+.........    .    .........+.+++||++|+|++++.
T Consensus       121 ~y~~~K~~~E~~l~----~~~~~~~~I~Rp~~v~G~~~~~~~~~~----~----~~~~~~~~~~~~~~i~v~DvA~ai~~  188 (212)
T d2a35a1         121 FYNRVKGELEQALQ----EQGWPQLTIARPSLLFGPREEFRLAEI----L----AAPIARILPGKYHGIEACDLARALWR  188 (212)
T ss_dssp             HHHHHHHHHHHHHT----TSCCSEEEEEECCSEESTTSCEEGGGG----T----TCCCC----CHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHhhhcc----ccccccceeeCCcceeCCcccccHHHH----H----HHHHhhccCCCCcEEEHHHHHHHHHH
Confidence            89999999999875    3566 5999999999998754321111    1    11111111122567999999999999


Q ss_pred             hhcCCCCC
Q 040253          241 LFEHPNAK  248 (338)
Q Consensus       241 ~l~~~~~~  248 (338)
                      +++++..+
T Consensus       189 ~~~~~~~g  196 (212)
T d2a35a1         189 LALEEGKG  196 (212)
T ss_dssp             HHTCCCSE
T ss_pred             HHcCCCCC
Confidence            99886544

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.93  E-value=5.9e-27  Score=202.85  Aligned_cols=227  Identities=18%  Similarity=0.241  Sum_probs=158.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHH---HHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVK---HLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      +.|||||||||||||++++++|+++|++|++++|++.......   .+..+.  ..+++++.+|+.+...+.+.+.+++.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc--cCCcEEEEeecccchhhhhhhhhcee
Confidence            4789999999999999999999999999999999765432211   111111  14789999999999999999999999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTG  160 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~  160 (338)
                      |+|+++...              ..+..++++++...+ .+++++.||.....   .      +..         ...+.
T Consensus        80 vi~~~~~~~--------------~~~~~~~~~a~~~~~-~~~~~~~s~~~~~~---~------~~~---------~~~~~  126 (307)
T d1qyca_          80 VISTVGSLQ--------------IESQVNIIKAIKEVG-TVKRFFPSEFGNDV---D------NVH---------AVEPA  126 (307)
T ss_dssp             EEECCCGGG--------------SGGGHHHHHHHHHHC-CCSEEECSCCSSCT---T------SCC---------CCTTH
T ss_pred             eeecccccc--------------cchhhHHHHHHHHhc-cccceeeecccccc---c------ccc---------ccccc
Confidence            999987422              223456778888887 77788888753332   1      111         11123


Q ss_pred             chHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC-CCCCCCC-CCccccHHHHHHHH
Q 040253          161 WMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE-AHYPIIK-QGQFVHLDDLCSAH  238 (338)
Q Consensus       161 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~i~v~D~a~~~  238 (338)
                      ..+...+...+..+    ++.+++++++||+++||+...... ...   .....+.. ..++.+. .++|+|++|+|+++
T Consensus       127 ~~~~~~~~~~~~~~----~~~~~~~~i~r~~~v~g~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~  198 (307)
T d1qyca_         127 KSVFEVKAKVRRAI----EAEGIPYTYVSSNCFAGYFLRSLA-QAG---LTAPPRDKVVILGDGNARVVFVKEEDIGTFT  198 (307)
T ss_dssp             HHHHHHHHHHHHHH----HHHTCCBEEEECCEEHHHHTTTTT-CTT---CSSCCSSEEEEETTSCCEEEEECHHHHHHHH
T ss_pred             cccccccccccchh----hccCCCceecccceecCCCccchh-hhh---hhhhhcccceeeecccccccCCcHHHHHHHH
Confidence            34555555555554    456999999999999998643211 111   11111222 2233333 37899999999999


Q ss_pred             HHhhcCCCCCC--ceEE-ecCCCCHHHHHHHHHHhCCC
Q 040253          239 IFLFEHPNAKG--RYIC-SSHPATILELAKFLREKYPE  273 (338)
Q Consensus       239 ~~~l~~~~~~~--~~~~-~~~~~t~~e~~~~i~~~~~~  273 (338)
                      +.+++++...+  .|++ +++.+|+.|+++.+.+.+|.
T Consensus       199 ~~~l~~~~~~~~~~~~~~~~~~~s~~ei~~~~~~~~G~  236 (307)
T d1qyca_         199 IKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK  236 (307)
T ss_dssp             HTTSSCGGGTTEEEECCCGGGEEEHHHHHHHHHHHTTS
T ss_pred             HHHhcChhhcCceeEEeCCCCccCHHHHHHHHHHHHCC
Confidence            99999876543  4565 45889999999999999985

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.91  E-value=6.4e-24  Score=187.67  Aligned_cols=227  Identities=16%  Similarity=0.092  Sum_probs=158.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC-chhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN-FDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~~~~d~vi   82 (338)
                      ..|+|+|||||||||++++++|+++||+|++++|++++.... .+...    ++++++++|++|..+ +..++.++|+++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~-~~~~~----~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAE-ELQAI----PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHH-HHHTS----TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhh-hhccc----CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            468999999999999999999999999999999988765432 22221    589999999999654 566788899888


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCch
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWM  162 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~  162 (338)
                      +....           ....++....++++++.+.+ ++++++.||.....  ..                  ...+...
T Consensus        77 ~~~~~-----------~~~~~~~~~~~~~~aa~~ag-v~~~v~~Ss~~~~~--~~------------------~~~~~~~  124 (350)
T d1xgka_          77 INTTS-----------QAGDEIAIGKDLADAAKRAG-TIQHYIYSSMPDHS--LY------------------GPWPAVP  124 (350)
T ss_dssp             ECCCS-----------TTSCHHHHHHHHHHHHHHHS-CCSEEEEEECCCGG--GT------------------SSCCCCT
T ss_pred             eeccc-----------ccchhhhhhhHHHHHHHHhC-CCceEEEeeccccc--cC------------------Ccccchh
Confidence            76542           12345667889999999998 67777777754332  10                  1123446


Q ss_pred             HHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCC---CCCCCCCCCccccH-HHHHHHH
Q 040253          163 YFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNE---AHYPIIKQGQFVHL-DDLCSAH  238 (338)
Q Consensus       163 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~v-~D~a~~~  238 (338)
                      |..+|...|.++.    +.+++++++|++.+++.............  ....+..   ..........++++ +|+++++
T Consensus       125 ~~~~k~~~~~~~~----~~~~~~~~vr~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v  198 (350)
T d1xgka_         125 MWAPKFTVENYVR----QLGLPSTFVYAGIYNNNFTSLPYPLFQME--LMPDGTFEWHAPFDPDIPLPWLDAEHDVGPAL  198 (350)
T ss_dssp             TTHHHHHHHHHHH----TSSSCEEEEEECEEGGGCBSSSCSSCBEE--ECTTSCEEEEESSCTTSCEEEECHHHHHHHHH
T ss_pred             hhhhHHHHHHHHH----hhccCceeeeeceeecccccccccccccc--ccccccceeeecccCCCcceEEEeHHHHHHHH
Confidence            7788888887664    46899999999999875433221111000  0001111   11122223567775 8999999


Q ss_pred             HHhhcCCC---CCCceEEecCCCCHHHHHHHHHHhCCC
Q 040253          239 IFLFEHPN---AKGRYICSSHPATILELAKFLREKYPE  273 (338)
Q Consensus       239 ~~~l~~~~---~~~~~~~~~~~~t~~e~~~~i~~~~~~  273 (338)
                      ..++....   .+..|+++++.+|+.|+++.+.+.+|+
T Consensus       199 ~~~l~~~~~~~~G~~~~~~g~~~T~~eia~~l~~~~G~  236 (350)
T d1xgka_         199 LQIFKDGPQKWNGHRIALTFETLSPVQVCAAFSRALNR  236 (350)
T ss_dssp             HHHHHHCHHHHTTCEEEECSEEECHHHHHHHHHHHHTS
T ss_pred             HHHHhCChhhcCCeEEEEeCCcCCHHHHHHHHHHHHCC
Confidence            99996532   244778888889999999999998874

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=8.2e-21  Score=157.89  Aligned_cols=209  Identities=16%  Similarity=0.169  Sum_probs=153.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||++.||.++++.|+++|++|++.+|+++..+.+.....     .++.++.+|++|++++.++++       
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTAFG   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            47999999999999999999999999999999998766555443322     578899999999998877663       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+.++..+++|+.++..+.+.+    .+.+ ..++|++||...+.              
T Consensus        80 ~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~--------------  144 (244)
T d1nffa_          80 GLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLA--------------  144 (244)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--------------
T ss_pred             CCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC-cceEEecccccccc--------------
Confidence            69999999986442     122345678999999998887755    3333 56899999976552              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +......|+.+|...+.+.+.++.++   |+++..|-||.+..+..... .       ..  ....+.    
T Consensus       145 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~-------~~--~~~~pl----  202 (244)
T d1nffa_         145 --------GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV-P-------ED--IFQTAL----  202 (244)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS-C-------TT--CSCCSS----
T ss_pred             --------ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh-h-------HH--HHhccc----
Confidence                    11134589999999999999999885   89999999998865432110 0       00  001111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                       .++...+|+|+++++++....  ..| .+.+.+
T Consensus       203 -~R~~~p~diA~~v~fL~s~~s~~itG~~i~vDG  235 (244)
T d1nffa_         203 -GRAAEPVEVSNLVVYLASDESSYSTGAEFVVDG  235 (244)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -cCCCCHHHHHHHHHHHhChhhCCCcCCEEEECC
Confidence             458899999999999986432  234 455543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=2e-20  Score=155.66  Aligned_cols=204  Identities=17%  Similarity=0.151  Sum_probs=149.4

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |...+|+++||||++-||.+++++|++.|++|++.+|+.+..+.....       -+++.+.+|++|++++.++++    
T Consensus         1 M~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~~   73 (242)
T d1ulsa_           1 MRLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-------VGAHPVVMDVADPASVERGFAEALA   73 (242)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-------TTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------cCCeEEEEecCCHHHHHHHHHHHHH
Confidence            666789999999999999999999999999999999986655444321       356889999999998887663    


Q ss_pred             ---CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|++||+||....     ...+.++..+++|+.++..+.+++..    .+ ...++.+||....+           
T Consensus        74 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~ss~~~~~-----------  141 (242)
T d1ulsa_          74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTASRVYLG-----------  141 (242)
T ss_dssp             HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECCGGGGC-----------
T ss_pred             hcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeeccccccC-----------
Confidence               69999999986442     22234567889999999888876643    23 45677777754322           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  .+....|+.+|.+.+.+.+.++.++   |+++..+.||.+-.+.... .........   ... .++ 
T Consensus       142 ------------~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~-~~~~~~~~~---~~~-~pl-  203 (242)
T d1ulsa_         142 ------------NLGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK-VPEKVREKA---IAA-TPL-  203 (242)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS-SCHHHHHHH---HHT-CTT-
T ss_pred             ------------CCCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc-CCHHHHHHH---Hhc-CCC-
Confidence                        1134589999999999999998875   7999999999997654332 122211111   111 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                          .++...+|+|+++++++...
T Consensus       204 ----~R~~~pedia~~v~fL~S~~  223 (242)
T d1ulsa_         204 ----GRAGKPLEVAYAALFLLSDE  223 (242)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSGG
T ss_pred             ----CCCCCHHHHHHHHHHHhchh
Confidence                45788999999999998643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.8e-21  Score=157.80  Aligned_cols=206  Identities=15%  Similarity=0.149  Sum_probs=149.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---CccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---GCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~~d~   80 (338)
                      .+|++|||||++.||.+++++|++.|++|++.+|+.++.+++....      +++..+.+|++|.+++.++++   ++|+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iDi   79 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence            5799999999999999999999999999999999876655443322      467889999999998888775   6899


Q ss_pred             EEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           81 VFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        81 vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      +||+|+....     ...+.++..+++|+.++..+.+++..    .+...++|++||.....                  
T Consensus        80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------------  141 (244)
T d1pr9a_          80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------------  141 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------------
T ss_pred             EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc------------------
Confidence            9999986442     22234557889999998887775432    22257899999976542                  


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcc
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQF  228 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (338)
                          +.+....|+.+|.+.+.+.+.++.++   |+++..|.||.+..+.........- . ....... .+.     .++
T Consensus       142 ----~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~-~-~~~~~~~-~pl-----~R~  209 (244)
T d1pr9a_         142 ----AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPH-K-AKTMLNR-IPL-----GKF  209 (244)
T ss_dssp             ----CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHH-H-HHHHHTT-CTT-----CSC
T ss_pred             ----cccchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChH-H-HHHHHhc-CCC-----CCC
Confidence                11134589999999999999998875   8999999999887553221111110 0 0101111 111     468


Q ss_pred             ccHHHHHHHHHHhhcCC
Q 040253          229 VHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       229 i~v~D~a~~~~~~l~~~  245 (338)
                      ...+|+|+++++++...
T Consensus       210 ~~peevA~~v~fL~S~~  226 (244)
T d1pr9a_         210 AEVEHVVNAILFLLSDR  226 (244)
T ss_dssp             BCHHHHHHHHHHHHSGG
T ss_pred             cCHHHHHHHHHHHhCch
Confidence            89999999999998643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=5.9e-21  Score=158.25  Aligned_cols=206  Identities=17%  Similarity=0.139  Sum_probs=148.3

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      -++|++|||||++.||.+++++|++.|++|.+.+|+.+..             .++..+++|++|++++.++++      
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~Dv~~~~~v~~~~~~~~~~~   71 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-------------KGLFGVEVDVTDSDAVDRAFTAVEEHQ   71 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-------------TTSEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh-------------cCceEEEEecCCHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999999986653             356789999999998877653      


Q ss_pred             -CccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||...     ....+.++..+++|+.++..+.+++    ++.+ ..++|++||.....             
T Consensus        72 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~~~~-------------  137 (237)
T d1uzma1          72 GPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLW-------------  137 (237)
T ss_dssp             SSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC---------------
T ss_pred             CCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchhhcc-------------
Confidence             6999999998543     2222345678999999988776644    4445 56999999976653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +......|+.+|.+.+.+.+.++.++   |+++.++.||.+..+.... ........   .... .+.   
T Consensus       138 ---------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~-~~~~~~~~---~~~~-~pl---  200 (237)
T d1uzma1         138 ---------GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA-LDERIQQG---ALQF-IPA---  200 (237)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-SCHHHHHH---HGGG-CTT---
T ss_pred             ---------CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc-cCHHHHHH---HHhc-CCC---
Confidence                     11134589999999999999998875   8999999999886542111 11111111   1111 111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS  254 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~  254 (338)
                        .++...+|+|+++++++....  ..| .+.+.
T Consensus       201 --~R~~~pedvA~~v~fL~S~~s~~itG~~i~vd  232 (237)
T d1uzma1         201 --KRVGTPAEVAGVVSFLASEDASYISGAVIPVD  232 (237)
T ss_dssp             --CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred             --CCCcCHHHHHHHHHHHhCchhcCCcCCeEEEC
Confidence              458899999999999986433  244 44553

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=4e-21  Score=160.01  Aligned_cols=214  Identities=14%  Similarity=0.115  Sum_probs=155.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||++-||.+++++|++.|++|++.+|+.+..+.+.....     .++..+.+|++|.+++.++++       
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            47899999999999999999999999999999998776665544332     467889999999988877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+|+....     ...+.++..+++|+.++..+.+++.    +.+ ..++|++||.....              
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~--------------  142 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVGTM--------------  142 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH--------------
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhhcC--------------
Confidence            69999999985442     1223455788999999998887763    333 47899999986653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +.+....|+.+|.+.+.+.+.++.++   |+++..+.||.+-.+........ ...   .. ....+.    
T Consensus       143 --------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~-~~~---~~-~~~~pl----  205 (243)
T d1q7ba_         143 --------GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRALSDD-QRA---GI-LAQVPA----  205 (243)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHH-HHH---HH-HTTCTT----
T ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhhhhhh-HHH---HH-HhcCCC----
Confidence                    11134589999999999999999875   89999999998854422111111 111   11 111112    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                       .++...+|+|+++++++....  ..| .+.+.+
T Consensus       206 -~R~~~pedvA~~v~fL~S~~s~~itGq~i~vdG  238 (243)
T d1q7ba_         206 -GRLGGAQEIANAVAFLASDEAAYITGETLHVNG  238 (243)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCCCHHHHHHHHHHHhCchhcCCcCCeEEECC
Confidence             458899999999999996433  244 445543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=6e-21  Score=160.09  Aligned_cols=221  Identities=14%  Similarity=0.126  Sum_probs=156.8

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      -.+|+++||||++-||.+++++|++.|++|++.+|+.+..++.......  ...++..+.+|++|++++.++++      
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~--~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ--LGGQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--cCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3578999999999999999999999999999999987765555433221  12578999999999988877653      


Q ss_pred             -CccEEEEecccCCCC----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 -GCTGVFHLATPMDFE----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                       ++|++||+||.....    ..+.++..+++|+.++..+.+++.    +.+ ..++|++||.....              
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~~--------------  151 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN--------------  151 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC--------------
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchhc--------------
Confidence             799999999854421    223355788899999988877653    333 46899999976543              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +.+....|+.+|...+.+.+.++.++   |+++.+|-||.+-.+...............   .. .+.    
T Consensus       152 --------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~---~~-~pl----  215 (255)
T d1fmca_         152 --------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKML---QH-TPI----  215 (255)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHH---HT-CSS----
T ss_pred             --------cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhccCCHHHHHHHH---hc-CCC----
Confidence                    11234589999999999999998875   899999999998655322222222111111   11 112    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--CCC-ceEEecCC
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSSHP  257 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~~~  257 (338)
                       .++...+|+|+++++++....  ..| .+.+.+..
T Consensus       216 -~R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~  250 (255)
T d1fmca_         216 -RRLGQPQDIANAALFLCSPAASWVSGQILTVSGGG  250 (255)
T ss_dssp             -CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred             -CCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence             457889999999999986433  244 45565443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.85  E-value=1.6e-20  Score=157.24  Aligned_cols=217  Identities=18%  Similarity=0.158  Sum_probs=154.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.+++++|++.|++|++.+|+.+..+........  ...++..+.+|++|++++.++++       
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~--~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS--FGYESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT--TTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            478999999999999999999999999999999987766555443322  22578999999999998877664       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+|+....     ...+.++..+++|+.++..+.+++    ++.+ ..++|++||.....              
T Consensus        87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~--------------  151 (251)
T d2c07a1          87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGLT--------------  151 (251)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH--------------
T ss_pred             CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECCHHhcC--------------
Confidence            79999999985442     122345678889999998887765    3334 57999999976553              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +......|+.+|.+.+.+.+.++.++   |+++..|.||.+-.+..... ........   ... .+.    
T Consensus       152 --------~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~-~~~~~~~~---~~~-~pl----  214 (251)
T d2c07a1         152 --------GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI-SEQIKKNI---ISN-IPA----  214 (251)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C-CHHHHHHH---HTT-CTT----
T ss_pred             --------CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc-CHHHHHHH---Hhc-CCC----
Confidence                    11134589999999999999998875   89999999999976643322 11111111   111 112    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                       .++...+|+|+++++++....  ..| .+.+.+
T Consensus       215 -~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDG  247 (251)
T d2c07a1         215 -GRMGTPEEVANLACFLSSDKSGYINGRVFVIDG  247 (251)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHhCchhCCCcCcEEEECC
Confidence             458899999999999986543  244 444533

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.85  E-value=4.6e-20  Score=156.12  Aligned_cols=221  Identities=16%  Similarity=0.206  Sum_probs=155.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||..++++|+++|++|++.+|+.+..++........   ..+.++.+|++|++++.++++       
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999877666554443322   468889999999998887763       


Q ss_pred             CccEEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 GCTGVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                      ++|++||+||.....       ..+.++..+++|+.++..+.+++.    +.+ ..++|++||...+.  ..        
T Consensus        82 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~~--~~--------  150 (268)
T d2bgka1          82 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFT--AG--------  150 (268)
T ss_dssp             CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTC--CC--------
T ss_pred             CcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCccccccccccc--cc--------
Confidence            799999999854321       112345678899999888877653    334 56899999876542  10        


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                 ......|+.+|...+.+.+.++.++   |+++..+.||.+-.+.........-..............  
T Consensus       151 -----------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--  217 (268)
T d2bgka1         151 -----------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLK--  217 (268)
T ss_dssp             -----------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSC--
T ss_pred             -----------cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccC--
Confidence                       0122379999999999999998875   899999999998776543322111111111001111111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS  254 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~  254 (338)
                         .++...+|+|+++++++....  ..| .+.+.
T Consensus       218 ---gr~~~pedvA~~v~fL~S~~s~~itGq~i~VD  249 (268)
T d2bgka1         218 ---GTLLRAEDVADAVAYLAGDESKYVSGLNLVID  249 (268)
T ss_dssp             ---SCCCCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred             ---CCCcCHHHHHHHHHHHhChhhCCccCceEEEC
Confidence               357889999999999996433  234 45553

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=7.1e-21  Score=158.39  Aligned_cols=218  Identities=15%  Similarity=0.130  Sum_probs=155.3

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC---C
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR---G   77 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---~   77 (338)
                      |.-.+|++|||||++.||..++++|+++|++|++.+|+.+...++....      +++..+.+|++|.+++.++++   +
T Consensus         1 mdl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~   74 (242)
T d1cyda_           1 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGP   74 (242)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCC
Confidence            6667899999999999999999999999999999999876655443322      467899999999998888776   6


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+||....     ...+.++..+++|+.++..+.+++..    .+...++|++||.....               
T Consensus        75 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~---------------  139 (242)
T d1cyda_          75 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV---------------  139 (242)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS---------------
T ss_pred             CeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc---------------
Confidence            8999999985442     12234557889999999888775532    22246899999976542               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHHHhhhhcccCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                             +.+....|+.+|.+.+.+.+.++.++   |+++..+-||.+..+...... .........   .. .+.    
T Consensus       140 -------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~---~~-~pl----  204 (242)
T d1cyda_         140 -------TFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLK---ER-HPL----  204 (242)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHH---HH-STT----
T ss_pred             -------cCCccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHH---hc-CCC----
Confidence                   11134589999999999999999875   799999999988654211000 011111111   11 111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                       .++...+|+|+++++++....  ..| .+.+.+
T Consensus       205 -~R~~~peeva~~v~fL~S~~s~~itG~~i~vDG  237 (242)
T d1cyda_         205 -RKFAEVEDVVNSILFLLSDRSASTSGGGILVDA  237 (242)
T ss_dssp             -SSCBCHHHHHHHHHHHHSGGGTTCCSSEEEEST
T ss_pred             -CCCcCHHHHHHHHHHHhCchhcCcCCceEEeCc
Confidence             468889999999999986433  234 455543

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.84  E-value=5.5e-20  Score=154.39  Aligned_cols=218  Identities=14%  Similarity=0.166  Sum_probs=155.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |.-.+|+++||||++.||.++++.|+++|++|++.+|+.+..+.......     .++..+.+|++|++++.++++    
T Consensus         1 M~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----~~~~~~~~Dvt~~~~v~~~~~~~~~   75 (256)
T d1k2wa_           1 MRLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG-----PAACAIALDVTDQASIDRCVAELLD   75 (256)
T ss_dssp             CTTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CceEEEEeeCCCHHHHHHHHHHHHH
Confidence            66678999999999999999999999999999999998766555443322     578999999999998887764    


Q ss_pred             ---CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|++||+||.....     ..+.++..+++|+.++..+.+++.    +.++..++|++||.....           
T Consensus        76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-----------  144 (256)
T d1k2wa_          76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR-----------  144 (256)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------
T ss_pred             HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc-----------
Confidence               699999999865421     223456789999999988887542    222246899999976552           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcc-------
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPIT-------  214 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~-------  214 (338)
                                 +.+....|+.+|...+.+.+.++.++   |+++..|.||.+-.+....     +........       
T Consensus       145 -----------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~-----~~~~~~~~~~~~~~~~  208 (256)
T d1k2wa_         145 -----------GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDG-----VDAKFADYENLPRGEK  208 (256)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHH-----HHHHHHHHHTCCTTHH
T ss_pred             -----------ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhh-----hhhhhhhhccCChHHH
Confidence                       11234589999999999999998775   8999999999886553111     100000000       


Q ss_pred             ----cCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          215 ----RNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       215 ----~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                          ....++     .++...+|+|+++++++....  ..| .+.+.+
T Consensus       209 ~~~~~~~~Pl-----gR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDG  251 (256)
T d1k2wa_         209 KRQVGAAVPF-----GRMGRAEDLTGMAIFLATPEADYIVAQTYNVDG  251 (256)
T ss_dssp             HHHHHHHSTT-----SSCBCHHHHHHHHHHTTSGGGTTCCSCEEEEST
T ss_pred             HHHHHhcCCC-----CCCcCHHHHHHHHHHHhCchhCCccCceEEECc
Confidence                000111     458899999999999885433  234 455643

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.84  E-value=9.3e-20  Score=152.11  Aligned_cols=217  Identities=15%  Similarity=0.118  Sum_probs=148.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||++-||..+++.|++.|++|.+.+|++..... ..+...   ..++..+.+|++|++++.++++       
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~-~~~~~~---g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAE-AAIRNL---GRRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHH-HHHHHT---TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHH-HHHHHc---CCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999999997654222 112222   2578999999999998887653       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+.++..+++|+.++..+.+++.    +.+ ..++|++||.....              
T Consensus        80 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~--------------  144 (247)
T d2ew8a1          80 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWL--------------  144 (247)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGS--------------
T ss_pred             CCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhcc--------------
Confidence            79999999986442     1224456789999999998887653    334 47899999976542              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +.+....|+.+|...+.+.+.++.++   |+++..|.||.+-.+...........   ..........    
T Consensus       145 --------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~---~~~~~~~~~l----  209 (247)
T d2ew8a1         145 --------KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMF---DVLPNMLQAI----  209 (247)
T ss_dssp             --------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC---------------------CTTSSS----
T ss_pred             --------cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccccchhH---HHHHHHhccC----
Confidence                    11234589999999999999999875   89999999998876543221111000   0000110111    


Q ss_pred             CCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          225 QGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       225 ~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                       .++...+|+|+++++++....  ..| .+.+.+
T Consensus       210 -~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDG  242 (247)
T d2ew8a1         210 -PRLQVPLDLTGAAAFLASDDASFITGQTLAVDG  242 (247)
T ss_dssp             -CSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESS
T ss_pred             -CCCCCHHHHHHHHHHHhCchhcCCcCCeEEECC
Confidence             357788999999999986433  234 445543

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.84  E-value=5e-20  Score=154.10  Aligned_cols=218  Identities=15%  Similarity=0.177  Sum_probs=153.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.+++++|++.|++|.+.+|+.+..+.........   .++.++.+|++|++++.++++       
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4699999999999999999999999999999999877666555444332   578999999999998877664       


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+|+.....     ..+.++..+++|+.++..+.+++.    +.+...++|++||...+.              
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~--------------  147 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV--------------  147 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS--------------
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec--------------
Confidence            699999999865421     223345688999999988887653    333124899999976542              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE-----NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                              +.+....|+.+|...+.+.+.++.+     +|+++..|.||.+..+...........  .. . ....+.  
T Consensus       148 --------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~--~~-~-~~~~pl--  213 (251)
T d1zk4a1         148 --------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEA--MS-Q-RTKTPM--  213 (251)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHH--HT-S-TTTCTT--
T ss_pred             --------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHH--HH-H-HhCCCC--
Confidence                    1113458999999999988887754     489999999998865432111111100  00 0 111111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                         .++...+|+|+++++++....  ..| .+.+.+
T Consensus       214 ---~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDG  246 (251)
T d1zk4a1         214 ---GHIGEPNDIAYICVYLASNESKFATGSEFVVDG  246 (251)
T ss_dssp             ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ---CCCcCHHHHHHHHHHHhCchhCCCcCcEEEECc
Confidence               458899999999999986433  244 444533

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.83  E-value=2.4e-20  Score=155.59  Aligned_cols=215  Identities=13%  Similarity=0.100  Sum_probs=150.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.+++++|+++|++|.+.+|+.+..+..+.+        +...+++|++|.+++.++++       
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~--------~~~~~~~Dv~~~~~v~~~~~~~~~~~G   75 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI--------GGAFFQVDLEDERERVRFVEEAAYALG   75 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH--------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--------CCeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            479999999999999999999999999999999987765444332        45778999999988877653       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+.++..+++|+.++..+.+++.    +.+ ..++|++||...+.              
T Consensus        76 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~~~~~--------------  140 (248)
T d2d1ya1          76 RVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLF--------------  140 (248)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTS--------------
T ss_pred             CCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-cccccccccccccc--------------
Confidence            79999999985431     1223445788999999998887764    333 56999999986653              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC--ChhHHHhhhhcccCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM--PPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~  222 (338)
                              +.+....|+.+|...+.+.+.++.++   |+++.++.||.+-.+......  ........... ....+.  
T Consensus       141 --------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~-~~~~pl--  209 (248)
T d2d1ya1         141 --------AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDW-EDLHAL--  209 (248)
T ss_dssp             --------BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHH-HTTSTT--
T ss_pred             --------cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHH-HhcCCC--
Confidence                    11234589999999999999998885   899999999988543210000  00000000000 011111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                         .++...+|+++++++++....  ..| .+.+.+
T Consensus       210 ---~R~~~pedia~~v~fL~S~~s~~itG~~i~vDG  242 (248)
T d2d1ya1         210 ---RRLGKPEEVAEAVLFLASEKASFITGAILPVDG  242 (248)
T ss_dssp             ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ---CCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCc
Confidence               457889999999999986433  244 455533

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.83  E-value=8.6e-20  Score=152.86  Aligned_cols=220  Identities=13%  Similarity=0.078  Sum_probs=156.3

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC-CCCchhhh----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE-EGNFDEPI----   75 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~----   75 (338)
                      |...+|+||||||++-||..++++|+++|++|+++.|+.++......+..... ..++.++.+|+++ .+++.+++    
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP-KVNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT-TSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCC-CCCEEEEEeecCCCHHHHHHHHHHHH
Confidence            67778999999999999999999999999999999998777665554433221 2578999999984 44455544    


Q ss_pred             ---CCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHh----C--CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           76 ---RGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKN----A--KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        76 ---~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                         .++|++||+||...   .+..+..+++|+.++.++.+++..    .  +...++|++||...+.             
T Consensus        80 ~~~g~iDilvnnAG~~~---~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~-------------  143 (254)
T d1sbya1          80 DQLKTVDILINGAGILD---DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN-------------  143 (254)
T ss_dssp             HHHSCCCEEEECCCCCC---TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------------
T ss_pred             HHcCCCCEEEeCCCCCC---HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc-------------
Confidence               37999999999654   356678999999999888776532    1  2246899999977653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC-C
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP-I  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~  222 (338)
                               +......|+.+|.....+.+.++.++   |++++.|-||.+..+........         ......+. .
T Consensus       144 ---------~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~---------~~~~~~~~~~  205 (254)
T d1sbya1         144 ---------AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSW---------LDVEPRVAEL  205 (254)
T ss_dssp             ---------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCG---------GGSCTTHHHH
T ss_pred             ---------CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccc---------hhHHHHHHhc
Confidence                     11234589999999999999888775   89999999999976521100000         00000000 0


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCCCCceEEec
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNAKGRYICSS  255 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~~~  255 (338)
                      .........+++|++++.+++....+.++.+.+
T Consensus       206 ~~~~~~~~~e~va~~~~~~~~~~~tG~vi~vdg  238 (254)
T d1sbya1         206 LLSHPTQTSEQCGQNFVKAIEANKNGAIWKLDL  238 (254)
T ss_dssp             HTTSCCEEHHHHHHHHHHHHHHCCTTCEEEEET
T ss_pred             cccCCCCCHHHHHHHHHHhhhCCCCCCEEEECC
Confidence            001335679999999999988765555666654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.83  E-value=2.7e-20  Score=156.47  Aligned_cols=211  Identities=15%  Similarity=0.097  Sum_probs=149.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.+++++|++.|++|++.+|+.+..+........  ...++..+.+|++|++++.++++       
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS--KGFKVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            579999999999999999999999999999999987665554332221  12578899999999988776542       


Q ss_pred             -CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||....     ...+.++..+++|+.++..+.+++.    +.+ ..++|++||.....             
T Consensus        85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~-------------  150 (259)
T d2ae2a_          85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE-RGNVVFISSVSGAL-------------  150 (259)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS-SEEEEEECCGGGTS-------------
T ss_pred             CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhc-cccccccccccccc-------------
Confidence             48999999986442     1223455789999999988877653    334 57999999976542             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCCh-hHHHhhhhcccCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPP-SLITALSPITRNEAHYPI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~  222 (338)
                               +.+....|+.+|...+.+.+.++.++   |+++..|.||.+-.+........ ............ .+.  
T Consensus       151 ---------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-~pl--  218 (259)
T d2ae2a_         151 ---------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDR-CAL--  218 (259)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHT-STT--
T ss_pred             ---------ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhc-CCC--
Confidence                     11134589999999999999999885   79999999998864421110000 001111111111 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCC
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         .++...+|+|+++++++...
T Consensus       219 ---~R~g~pedvA~~v~fL~S~~  238 (259)
T d2ae2a_         219 ---RRMGEPKELAAMVAFLCFPA  238 (259)
T ss_dssp             ---CSCBCHHHHHHHHHHHHSGG
T ss_pred             ---CCCcCHHHHHHHHHHHhCch
Confidence               45888999999999998643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.83  E-value=1.3e-19  Score=151.41  Aligned_cols=214  Identities=18%  Similarity=0.139  Sum_probs=150.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.+++++|+++|++|++.+|+.+.........     ..++.++.+|++|.+++.++++       
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----CCceEEEEcccCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999999999876554443221     1578999999999998877663       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+|+....     ...+.++..+++|+.++..+.+++.    +.+ ..++|++||...+.              
T Consensus        79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS~~~~~--------------  143 (254)
T d1hdca_          79 SVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLM--------------  143 (254)
T ss_dssp             CCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--------------
T ss_pred             CccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccccchhcc--------------
Confidence            79999999986442     1223455789999999988887663    334 57999999976552              


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIK  224 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (338)
                              +......|+.+|.+.+.+.+.++.++   |+++.++-||.+..+..        ......  ..........
T Consensus       144 --------~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~~--------~~~~~~--~~~~~~~~~p  205 (254)
T d1hdca_         144 --------GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT--------AETGIR--QGEGNYPNTP  205 (254)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------HHHTCC--CSTTSCTTST
T ss_pred             --------cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCccc--------hhcCHH--HHHHHHhCCC
Confidence                    11134589999999999999999875   79999999998854321        000000  0000010000


Q ss_pred             CCcc-ccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          225 QGQF-VHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       225 ~~~~-i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ..++ ...+|+|+++++++....  ..| .+.+.+
T Consensus       206 l~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDG  240 (254)
T d1hdca_         206 MGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDG  240 (254)
T ss_dssp             TSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             CCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCC
Confidence            1234 357999999999986433  234 555643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=3.1e-20  Score=155.30  Aligned_cols=219  Identities=16%  Similarity=0.118  Sum_probs=152.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||++.||.+++++|++.|++|.+.+|+.+...+... +....  ..++..+.+|++|++++.++++      
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY--GVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            57999999999999999999999999999999998766544322 21111  1468899999999998877663      


Q ss_pred             -CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||....     ...+.++..+++|+.++..+.+++.    +.+ ..++|++||.....  .          
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~S~~~~~--~----------  148 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSLTVEE--V----------  148 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCGGGTC--C----------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccccchhcc--c----------
Confidence             69999999986442     1223455788999999988887653    333 56999999864321  0          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +......|+.+|...+.+.+.++.++   |+++..+.||.+-.+........  .......... .++   
T Consensus       149 ---------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~--~~~~~~~~~~-~pl---  213 (251)
T d1vl8a_         149 ---------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSD--PEKLDYMLKR-IPL---  213 (251)
T ss_dssp             ---------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTC--HHHHHHHHHT-CTT---
T ss_pred             ---------cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCC--HHHHHHHHhc-CCC---
Confidence                     11123589999999999999998875   89999999998865542110000  0001111111 112   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS  254 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~  254 (338)
                        .++...+|+|+++++++....  ..| .+.+.
T Consensus       214 --~R~~~pedvA~~v~fL~S~~a~~itG~~i~vD  245 (251)
T d1vl8a_         214 --GRTGVPEDLKGVAVFLASEEAKYVTGQIIFVD  245 (251)
T ss_dssp             --SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEES
T ss_pred             --CCCCCHHHHHHHHHHHhCchhCCCcCcEEEeC
Confidence              457789999999999886433  244 44453

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.83  E-value=5.1e-20  Score=154.66  Aligned_cols=212  Identities=16%  Similarity=0.145  Sum_probs=150.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||++-||..++++|++.|++|.+.+|+.+..+.............++..+.+|++|++++.++++       
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999999999999999877655543322211122478899999999998877653       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|++||+||....      ...+.++..+++|+.++..+.+++.    +.+ ..++|++||.....             
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~-------------  148 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR-------------  148 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS-------------
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhcc-------------
Confidence            69999999985321      1223456789999999999887653    333 56899999976542             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC----ChhHHHhhhhcccCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM----PPSLITALSPITRNEAH  219 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~  219 (338)
                               +.+....|+.+|...+.+.+.++.++   ||++..+.||.+..+......    ........... ....+
T Consensus       149 ---------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-~~~~p  218 (258)
T d1iy8a_         149 ---------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEF-IQVNP  218 (258)
T ss_dssp             ---------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHH-HTTCT
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHH-HhcCC
Confidence                     11234589999999999999998875   899999999988654211000    00000001101 11111


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .     .++...+|+|+++++++..
T Consensus       219 l-----~R~~~p~dvA~~v~fL~S~  238 (258)
T d1iy8a_         219 S-----KRYGEAPEIAAVVAFLLSD  238 (258)
T ss_dssp             T-----CSCBCHHHHHHHHHHHTSG
T ss_pred             C-----CCCcCHHHHHHHHHHHhCc
Confidence            1     4588899999999999864

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=9.4e-20  Score=153.08  Aligned_cols=207  Identities=15%  Similarity=0.148  Sum_probs=137.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||..++++|++.|++|++.+|+.+..++.......  ...++..+.+|+++.+++.++++       
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK--KGFQVTGSVCDASLRPEREKLMQTVSSMFG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            479999999999999999999999999999999987665554332221  12578999999999987766542       


Q ss_pred             -CccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       .+|++||+||...     ....+.++..+++|+.++..+.+++.    +.+ ..++|++||.....             
T Consensus        85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-------------  150 (259)
T d1xq1a_          85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV-------------  150 (259)
T ss_dssp             TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-------------------
T ss_pred             CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccccccccc-------------
Confidence             4899999998544     12223456788999999988887653    334 46899999976543             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               +......|+.+|.+.+.+.+.++.++   |+++.+|-||.+-.+............    ......++   
T Consensus       151 ---------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~----~~~~~~pl---  214 (259)
T d1xq1a_         151 ---------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKK----VVISRKPL---  214 (259)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------------------
T ss_pred             ---------cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhhchHHHHH----HHHhCCCC---
Confidence                     11134589999999999999998875   899999999988655432211111000    00011111   


Q ss_pred             CCCccccHHHHHHHHHHhhcC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~  244 (338)
                        .++...+|+|.++++++..
T Consensus       215 --~R~~~pedvA~~v~fL~S~  233 (259)
T d1xq1a_         215 --GRFGEPEEVSSLVAFLCMP  233 (259)
T ss_dssp             -----CCGGGGHHHHHHHTSG
T ss_pred             --CCCcCHHHHHHHHHHHhCc
Confidence              4578899999999999854

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.82  E-value=3.1e-20  Score=156.44  Aligned_cols=217  Identities=17%  Similarity=0.096  Sum_probs=144.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC-cHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD-NKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||++-||.+++++|+++|++|++.+|+.. ..++........ ...++.++.+|++|++++.++++      
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH-HTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHh-cCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999753 333332211100 11478899999999998887764      


Q ss_pred             -CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||....     ...+.++..+++|+.++..+.+++    ++.+ ..++|++||.....             
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-------------  147 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV-------------  147 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-------------
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeeccccccee-------------
Confidence             69999999986442     222345678899999988877665    3334 46999999976553             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhh-hhcccCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITAL-SPITRNEAHYPI  222 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~  222 (338)
                               +.+....|+.+|...+.+.+.++.++   |++++.|.||.+-.+.............. .........+..
T Consensus       148 ---------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (260)
T d1x1ta1         148 ---------ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSE  218 (260)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------CHHH
T ss_pred             ---------ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHh
Confidence                     11134589999999999999999875   89999999998865542221110000000 000000000000


Q ss_pred             -CCCCccccHHHHHHHHHHhhcC
Q 040253          223 -IKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       223 -~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                       -...++...+|+|+++++++..
T Consensus       219 ~~Pl~R~g~pediA~~v~fL~S~  241 (260)
T d1x1ta1         219 KQPSLQFVTPEQLGGTAVFLASD  241 (260)
T ss_dssp             HCTTCCCBCHHHHHHHHHHHHSG
T ss_pred             cCCCCCCcCHHHHHHHHHHHhCh
Confidence             0014588999999999999864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=151.91  Aligned_cols=205  Identities=15%  Similarity=0.163  Sum_probs=147.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.++++.|++.|++|++.+|+.+..+.+....      +++.++.+|++|++++.++++       
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRRFG   78 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999876655554332      468899999999998887663       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      ++|++||+||....      ...+.++..+++|+.++..+.+++...  ....++|++||.....               
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~~---------------  143 (250)
T d1ydea1          79 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAI---------------  143 (250)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHH---------------
T ss_pred             CCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccccccc---------------
Confidence            69999999985431      112334578899999999888766432  1125899999986653               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCC---CCCChhHHHhhhhcccCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLT---SSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                             +.+....|+.+|...+.+.+.++.++   |+++..|.||.+-.+...   .................  +.  
T Consensus       144 -------~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~--pl--  212 (250)
T d1ydea1         144 -------GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQ--PL--  212 (250)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTS--TT--
T ss_pred             -------cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcC--CC--
Confidence                   11234589999999999999999875   899999999988543210   00010001101101111  11  


Q ss_pred             CCCCccccHHHHHHHHHHhhc
Q 040253          223 IKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~  243 (338)
                         .++...+|+|+++++++.
T Consensus       213 ---~R~g~p~eva~~v~fL~S  230 (250)
T d1ydea1         213 ---GRMGQPAEVGAAAVFLAS  230 (250)
T ss_dssp             ---SSCBCHHHHHHHHHHHHH
T ss_pred             ---CCCCCHHHHHHHHHHHhC
Confidence               468899999999999885

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.82  E-value=2e-19  Score=151.33  Aligned_cols=211  Identities=17%  Similarity=0.147  Sum_probs=150.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.++++.|++.|++|++.+|+.+..++.......  ...++..+.+|++|.+++.++++       
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE--KGVEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT--TTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999999987766655443332  22578999999999988877663       


Q ss_pred             CccEEEEecccCCC------CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF------ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|++||+||....      ...+.++..+++|+.++..+.+++.    +.+ ..++|++||...+.             
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~~~-------------  147 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTASMAGVK-------------  147 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHS-------------
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhc-CCCCCeeechhhcc-------------
Confidence            69999999985431      1223355788899999988887653    233 57999999986653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCC------------CCChhHHHhhh
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTS------------SMPPSLITALS  211 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~------------~~~~~~~~~~~  211 (338)
                               +.+....|+.+|...+.+.+.++.++   |++++.+.||.+-.+....            ...........
T Consensus       148 ---------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (260)
T d1zema1         148 ---------GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQ  218 (260)
T ss_dssp             ---------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHH
T ss_pred             ---------CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHH
Confidence                     11124589999999999999999886   7999999999886542100            00000000000


Q ss_pred             hcccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          212 PITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ..... .+.     .++...+|+|+++++++...
T Consensus       219 ~~~~~-~Pl-----~R~g~pedvA~~v~fL~S~~  246 (260)
T d1zema1         219 QMIGS-VPM-----RRYGDINEIPGVVAFLLGDD  246 (260)
T ss_dssp             HHHHT-STT-----SSCBCGGGSHHHHHHHHSGG
T ss_pred             HHHhc-CCC-----CCCcCHHHHHHHHHHHhCch
Confidence            00011 111     45788999999999999643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.82  E-value=1.9e-19  Score=151.10  Aligned_cols=210  Identities=16%  Similarity=0.142  Sum_probs=147.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++-||.+++++|+++|++|++.+|+++..++.......  ....+.++.+|+++.+++.++++       
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~--~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~   82 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE--KGLNVEGSVCDLLSRTERDKLMQTVAHVFD   82 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            479999999999999999999999999999999987665554433321  12567889999999988776542       


Q ss_pred             -CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       .+|++||+|+....     ...+.+...+++|+.++..+.+++.    ..+ ..++|++||.....  .          
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~~~~~--~----------  149 (258)
T d1ae1a_          83 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFS--A----------  149 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTS--C----------
T ss_pred             CCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-cccccccccccccc--c----------
Confidence             48999999986442     1223456788999999988877653    334 67999999986653  1          


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh--HHHhhhhcccCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS--LITALSPITRNEAHYP  221 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~~~  221 (338)
                                .+....|+.+|...+.+.+.++.++   |+++.+|.||.+..+.........  ........... .+. 
T Consensus       150 ----------~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~-~pl-  217 (258)
T d1ae1a_         150 ----------LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVK-TPM-  217 (258)
T ss_dssp             ----------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHH-STT-
T ss_pred             ----------cccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhc-CCC-
Confidence                      1134589999999999999999885   799999999999766432211100  00001111111 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                          .++...+|+|+++++++..
T Consensus       218 ----gR~~~pediA~~v~fL~S~  236 (258)
T d1ae1a_         218 ----GRAGKPQEVSALIAFLCFP  236 (258)
T ss_dssp             ----CSCBCHHHHHHHHHHHHSG
T ss_pred             ----CCCcCHHHHHHHHHHHhCh
Confidence                4588999999999999954

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.82  E-value=4.9e-20  Score=154.30  Aligned_cols=219  Identities=14%  Similarity=0.104  Sum_probs=150.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|+++||||++-||.++++.|+++|++|++.+|+.+..+.+.....     .+..++.+|++|.+++.++++       
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   79 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----CCeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            46899999999999999999999999999999998766555544332     467889999999988877653       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      ++|++||+||....     ...+.++..+++|+.++..+.+++...  .+..++|++||.....                
T Consensus        80 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~----------------  143 (253)
T d1hxha_          80 TLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL----------------  143 (253)
T ss_dssp             SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS----------------
T ss_pred             CCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhc----------------
Confidence            69999999986442     122345678999999988877765332  1137899999976542                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhH-HHhhhhcccCCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSL-ITALSPITRNEAHYPII  223 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  223 (338)
                            +.+....|+.+|...+.+.+.++.+.     ++++..+-||.+..+.......... .....   .....   .
T Consensus       144 ------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~---~~~~~---~  211 (253)
T d1hxha_         144 ------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVL---HDPKL---N  211 (253)
T ss_dssp             ------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHB---CBTTT---B
T ss_pred             ------CccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHH---hCccc---c
Confidence                  11234589999999999888887653     5999999999886542110000000 00000   11000   0


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ...++...+|+|+++++++....  ..| .+.+.+
T Consensus       212 ~~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDG  246 (253)
T d1hxha_         212 RAGRAYMPERIAQLVLFLASDESSVMSGSELHADN  246 (253)
T ss_dssp             TTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             ccCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECc
Confidence            11358889999999999986433  234 455544

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.82  E-value=1.5e-19  Score=151.92  Aligned_cols=218  Identities=15%  Similarity=0.104  Sum_probs=150.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|+++||||++.||.+++++|++.|++|++.+|+.+. .+.... +...   ..++..+.+|++|++++.++++     
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~---g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV---GGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT---TCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999998643 333322 2222   2578899999999988877663     


Q ss_pred             --CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCC
Q 040253           77 --GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDET  145 (338)
Q Consensus        77 --~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~  145 (338)
                        ++|++||+||....     ...+.++..+++|+.++..+.+++    .+.+....+|++||.....            
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------  150 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------  150 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------------
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc------------
Confidence              79999999986442     122345678999999988887665    3334235689999975542            


Q ss_pred             CCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCC
Q 040253          146 SWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       146 ~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (338)
                                +.+....|+.+|...+.+.+.++.++   |+++.+|.||.+..+........  ....... ....++  
T Consensus       151 ----------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~--~~~~~~~-~~~~pl--  215 (261)
T d1geea_         151 ----------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFAD--PEQRADV-ESMIPM--  215 (261)
T ss_dssp             ----------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHS--HHHHHHH-HTTCTT--
T ss_pred             ----------cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCC--HHHHHHH-HhcCCC--
Confidence                      11134589999999999999998875   89999999998865431100000  0001111 111122  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS  254 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~  254 (338)
                         .++...+|+|+++++++....  ..| .+.+.
T Consensus       216 ---~R~~~pediA~~v~fL~S~~s~~itG~~i~vD  247 (261)
T d1geea_         216 ---GYIGEPEEIAAVAAWLASSEASYVTGITLFAD  247 (261)
T ss_dssp             ---SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred             ---CCCCCHHHHHHHHHHHhCchhcCCcCCeEEEC
Confidence               457889999999999986433  234 45553

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.6e-19  Score=152.32  Aligned_cols=222  Identities=13%  Similarity=0.074  Sum_probs=153.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcC-C-CCCCcEEEEecccCCCCCchhhhC----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLEL-P-KASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~-~-~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      .+|++|||||++-||.+++++|++.|++|++.+|+.++.+.... +... . ....++..+.+|++|++++.++++    
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   90 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   90 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999998776554433 2221 1 123578999999999998887663    


Q ss_pred             ---CccEEEEecccCC-----CCCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 ---GCTGVFHLATPMD-----FESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 ---~~d~vi~~a~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                         ++|++||+|+...     ....+.++..+++|+.++..+.+++..    .+ ..++|++||....+           
T Consensus        91 ~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~~-----------  158 (297)
T d1yxma1          91 TFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKAG-----------  158 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTTC-----------
T ss_pred             HhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-cccccccccccccc-----------
Confidence               6999999998543     122234557889999999988877643    23 45788877643221           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                  .+....|+.+|.+.+.+.+.++.++   |+++.+|.||.+..+.........-.......... .++ 
T Consensus       159 ------------~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~-~pl-  224 (297)
T d1yxma1         159 ------------FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK-IPA-  224 (297)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG-STT-
T ss_pred             ------------ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhc-CCC-
Confidence                        0124589999999999999999886   89999999999876542211111111111111011 111 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                          .++...+|+|.++++++....  ..| .+.+.+
T Consensus       225 ----gR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDG  257 (297)
T d1yxma1         225 ----KRIGVPEEVSSVVCFLLSPAASFITGQSVDVDG  257 (297)
T ss_dssp             ----SSCBCTHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----CCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCc
Confidence                458889999999999996433  244 445543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.81  E-value=8.2e-20  Score=151.85  Aligned_cols=204  Identities=19%  Similarity=0.195  Sum_probs=145.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      .+|++|||||++.||..++++|+++|++|++.+|+.++......  .+   ..++.++++|+++++++.++++       
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~--~~---~~~~~~~~~Dls~~~~i~~~~~~i~~~~g   78 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA--AL---EAEAIAVVADVSDPKAVEAVFAEALEEFG   78 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH--TC---CSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH--Hc---CCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999999999998765544322  12   2578899999999998877653       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      ++|++||+|+....     ...+.+...+++|+.+...+.+++.... ..+.++.+||.+...                 
T Consensus        79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~-----------------  141 (241)
T d2a4ka1          79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG-----------------  141 (241)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC-----------------
T ss_pred             CccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc-----------------
Confidence            69999999985431     1223345788899999999888775543 234555555543221                 


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCc
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQ  227 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (338)
                           . +....|+.+|.+.|.+.+.+++++   |+++.++.||.+-.+..............    .. .+.     .+
T Consensus       142 -----~-~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~----~~-~p~-----~r  205 (241)
T d2a4ka1         142 -----A-FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEV----GA-SPL-----GR  205 (241)
T ss_dssp             -----H-HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHH----HT-STT-----CS
T ss_pred             -----c-cCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHH----hC-CCC-----CC
Confidence                 0 124479999999999999999886   69999999998865532221111111111    11 111     45


Q ss_pred             cccHHHHHHHHHHhhcCC
Q 040253          228 FVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       228 ~i~v~D~a~~~~~~l~~~  245 (338)
                      +...+|+|+++++++...
T Consensus       206 ~~~p~dva~~v~fL~S~~  223 (241)
T d2a4ka1         206 AGRPEEVAQAALFLLSEE  223 (241)
T ss_dssp             CBCHHHHHHHHHHHHSGG
T ss_pred             CcCHHHHHHHHHHHhcch
Confidence            889999999999999643

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.81  E-value=2e-19  Score=151.48  Aligned_cols=228  Identities=16%  Similarity=0.172  Sum_probs=153.7

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC---
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR---   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~---   76 (338)
                      |+-++|++|||||++.||.+++++|++.|++|++.+|+.+...+... +.+.  ...++..+.+|++|++++.++++   
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~   82 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKTIQQID   82 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--hCCceEEEEccCCCHHHHHHHHHHHH
Confidence            44568999999999999999999999999999999998877554432 2111  11478999999999998877663   


Q ss_pred             ----CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcC
Q 040253           77 ----GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                          ++|++||+|+....     ...+.++..+++|+.++..+.+++.    +.+....++.+||.....   .....+.
T Consensus        83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~---~~~~~~~  159 (260)
T d1h5qa_          83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQI---INQSSLN  159 (260)
T ss_dssp             HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS---CCEEETT
T ss_pred             HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccc---ccccccc
Confidence                69999999985432     1223455788999999888776543    223245677777655432   1000000


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  .......|+.+|.+.+.+.+.++.++   |+++.+|.||.+-.+..... ........   .. ..+.
T Consensus       160 ------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~-~~~~~~~~---~~-~~pl  222 (260)
T d1h5qa_         160 ------------GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM-DKKIRDHQ---AS-NIPL  222 (260)
T ss_dssp             ------------EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS-CHHHHHHH---HH-TCTT
T ss_pred             ------------cCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhcc-CHHHHHHH---Hh-cCCC
Confidence                        11234589999999999999998775   89999999998865432211 11111111   11 1112


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                           .++...+|+|+++++++....  ..| .+.+.+
T Consensus       223 -----~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDG  255 (260)
T d1h5qa_         223 -----NRFAQPEEMTGQAILLLSDHATYMTGGEYFIDG  255 (260)
T ss_dssp             -----SSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECT
T ss_pred             -----CCCcCHHHHHHHHHHHhcchhCCCcCceEEECC
Confidence                 458889999999999986433  244 445543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.81  E-value=3.6e-19  Score=147.40  Aligned_cols=209  Identities=15%  Similarity=0.109  Sum_probs=145.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~d~vi   82 (338)
                      .+|++|||||++-||.+++++|++.|++|.+.+|+.+..++           .+.+++.+|+++. +.+.+.+.++|++|
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~-----------~~~~~~~~Dv~~~~~~~~~~~g~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR-----------SGHRYVVCDLRKDLDLLFEKVKEVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-----------TCSEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh-----------cCCcEEEcchHHHHHHHHHHhCCCcEEE
Confidence            46899999999999999999999999999999997543322           2447788999763 33444556899999


Q ss_pred             EecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhh
Q 040253           83 HLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFV  153 (338)
Q Consensus        83 ~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~  153 (338)
                      |+||....     ...+.++..+++|+.++..+.+++    ++.+ ..++|++||.....                    
T Consensus        72 nnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~S~~~~~--------------------  130 (234)
T d1o5ia_          72 LNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSFSVIS--------------------  130 (234)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS--------------------
T ss_pred             ecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccccccccc--------------------
Confidence            99985431     122334567889999888877765    3334 46899999976543                    


Q ss_pred             hhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCcccc
Q 040253          154 RSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVH  230 (338)
Q Consensus       154 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  230 (338)
                        +......|+.+|.+.+.+.+.++.++   |+++.+|.||.+-.+..............    ....+.     .++..
T Consensus       131 --~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~----~~~~pl-----~R~~~  199 (234)
T d1o5ia_         131 --PIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQV----ESQIPM-----RRMAK  199 (234)
T ss_dssp             --CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHSCHHHHHHH----HTTSTT-----SSCBC
T ss_pred             --cccccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhcCHHHHHHH----HhcCCC-----CCCcC
Confidence              11234589999999999999988875   89999999998865542211111111111    111122     46889


Q ss_pred             HHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          231 LDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       231 v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      .+|+|+++++++....  ..| .+.+.+
T Consensus       200 pediA~~v~fL~S~~s~~itG~~i~vDG  227 (234)
T d1o5ia_         200 PEEIASVVAFLCSEKASYLTGQTIVVDG  227 (234)
T ss_dssp             HHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             HHHHHHHHHHHhChhhcCCcCcEEEECc
Confidence            9999999999986433  244 444533

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.81  E-value=1.9e-19  Score=151.35  Aligned_cols=220  Identities=18%  Similarity=0.154  Sum_probs=154.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +|.+|||||++-||.+++++|+++|++|++.+|+.+..++.......  ...++..+.+|++|++++.++++       +
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~--~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE--AGVEADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            57889999999999999999999999999999987665554433221  12578999999999998877663       6


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhC------CCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNA------KTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      +|++||+||....     ...+.++..+++|+.++..+.+++..+      + ..++|++||...+.             
T Consensus        80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~-~g~Ii~i~S~~~~~-------------  145 (257)
T d2rhca1          80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG-TGRIVNIASTGGKQ-------------  145 (257)
T ss_dssp             CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHT-EEEEEEECCGGGTS-------------
T ss_pred             CCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcC-Cccccccccccccc-------------
Confidence            9999999986442     122345678999999999999877532      3 46899999876552             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCC-------CChhHHHhhhhcccC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSS-------MPPSLITALSPITRN  216 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~~~~  216 (338)
                               +.+....|+.+|...+.+.+.++.++   |+++..+.||.+-.+.....       ............. .
T Consensus       146 ---------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~-~  215 (257)
T d2rhca1         146 ---------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRIT-A  215 (257)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHH-T
T ss_pred             ---------ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHH-h
Confidence                     11134589999999999999999886   79999999998854321000       0000000000001 1


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ..+.     .++...+|+|+++++++....  ..| .+.+.+
T Consensus       216 ~~Pl-----gR~~~pedia~~v~fL~S~~s~~itG~~i~vDG  252 (257)
T d2rhca1         216 RVPI-----GRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCG  252 (257)
T ss_dssp             TSTT-----SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             cCCC-----CCCcCHHHHHHHHHHHhCchhcCCcCceEEECc
Confidence            1111     468899999999999996432  234 445543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-19  Score=152.06  Aligned_cols=220  Identities=16%  Similarity=0.093  Sum_probs=150.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ++|++|||||++-||.+++++|+++|++|.+++|+.+...+............++..+.+|++|.+++.++++       
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999999999999999887766554433322223578999999999998887663       


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHH----hC--CCccEEEEecCceeeeccCCCCCCcCCCCCCch
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACK----NA--KTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDL  150 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~--~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~  150 (338)
                      ++|++||+|+....   ++.++.+++|+.++..+..++.    +.  +...++|++||...+.                 
T Consensus        82 ~iDilVnnAg~~~~---~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~-----------------  141 (254)
T d2gdza1          82 RLDILVNNAGVNNE---KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM-----------------  141 (254)
T ss_dssp             CCCEEEECCCCCCS---SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-----------------
T ss_pred             CcCeeccccccccc---ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc-----------------
Confidence            69999999997553   4567889999988877766553    22  1135799999976542                 


Q ss_pred             hhhhhccCCCchHHHHHHHHHHHHHH--HHH---HcCccEEEEcCCceeCCCCCCCCChh-HHH---hhhhcccCCCCCC
Q 040253          151 DFVRSVKMTGWMYFVSKTLAEQAAWK--FAE---ENNIDFISIIPSLVVGPFLTSSMPPS-LIT---ALSPITRNEAHYP  221 (338)
Q Consensus       151 ~~~~~~~~p~~~Y~~sK~~~E~~~~~--~~~---~~~~~~~ilRp~~v~G~~~~~~~~~~-~~~---~~~~~~~~~~~~~  221 (338)
                           +.+....|+.+|...+.+.+.  ++.   .+|+++..|.||.+-.+......... ...   ..... ....+. 
T Consensus       142 -----~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-~~~~p~-  214 (254)
T d2gdza1         142 -----PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHI-KDMIKY-  214 (254)
T ss_dssp             -----CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHH-HHHHHH-
T ss_pred             -----CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHH-HhcCCC-
Confidence                 111345899999999988775  333   34899999999988543211000000 000   00000 000000 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCCCCC-ceEEe
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPNAKG-RYICS  254 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~  254 (338)
                          .++...+|+|+++++++......| ...+.
T Consensus       215 ----~r~~~pedvA~~v~fL~s~~~itG~~i~Vd  244 (254)
T d2gdza1         215 ----YGILDPPLIANGLITLIEDDALNGAIMKIT  244 (254)
T ss_dssp             ----HCCBCHHHHHHHHHHHHHCTTCSSCEEEEE
T ss_pred             ----CCCcCHHHHHHHHHHHHcCCCCCCCEEEEC
Confidence                246788999999999998665555 44553

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.81  E-value=4.1e-20  Score=155.16  Aligned_cols=219  Identities=16%  Similarity=0.175  Sum_probs=151.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Cc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~   78 (338)
                      |.+|||||++-||.+++++|+++|++|.+.+|+.+..+.........  ..++..+.+|++|++++.++++       ++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA--GGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--TCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            45699999999999999999999999999999877666554433211  2578999999999998877653       69


Q ss_pred             cEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           79 TGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        79 d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      |++||+||....     ...+.++..+++|+.++..+.+++.    ..+...+++++||...+.                
T Consensus        80 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~----------------  143 (255)
T d1gega_          80 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV----------------  143 (255)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS----------------
T ss_pred             cEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc----------------
Confidence            999999985441     1223456788999999988877653    333246799999976542                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHH--------hhhhcccCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLIT--------ALSPITRNEA  218 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~--------~~~~~~~~~~  218 (338)
                            +.+....|+.+|...+.+.+.++.++   |+++..|.||.+-.+..... ......        ..... ....
T Consensus       144 ------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~  215 (255)
T d1gega_         144 ------GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEI-DRQVSEAAGKPLGYGTAEF-AKRI  215 (255)
T ss_dssp             ------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHH-HHHHHHHHTCCTTHHHHHH-HTTC
T ss_pred             ------cCcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhh-hhhhHhhhcccchhHHHHH-HhcC
Confidence                  11234589999999999999998775   89999999998854321000 000000        00000 0111


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      ++     .++...+|+|+++++++....  ..| .+.+.+
T Consensus       216 pl-----~R~~~peevA~~v~fL~S~~a~~itG~~i~vDG  250 (255)
T d1gega_         216 TL-----GRLSEPEDVAACVSYLASPDSDYMTGQSLLIDG  250 (255)
T ss_dssp             TT-----CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESS
T ss_pred             CC-----CCCcCHHHHHHHHHHHhCchhCCccCcEEEecC
Confidence            11     458889999999999986433  234 445543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.80  E-value=1.5e-19  Score=150.48  Aligned_cols=204  Identities=18%  Similarity=0.169  Sum_probs=145.2

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC-CCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------C
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRD-PDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------G   77 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~   77 (338)
                      +.||||||++-||.+++++|++.|++|.+.+++ .+..+.+......  ...++..+.+|++|.+++.++++       +
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA--YGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH--cCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            479999999999999999999999999887654 4444444332221  12578899999999998877653       6


Q ss_pred             ccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           78 CTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        78 ~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      +|++||+|+....     ...+.++..+++|+.++..+.+++.    +.+ ..++|++||...+.               
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~---------------  143 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLI---------------  143 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHH---------------
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC-CcEEEEEcChhhcC---------------
Confidence            9999999986442     2233456789999999988877653    334 57999999976653               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQ  225 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (338)
                             +......|+.+|.+.+.+.+.++.++   |+++.++.||.+-.+.... +........   .. ..+.     
T Consensus       144 -------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~-~~~~~~~~~---~~-~~pl-----  206 (244)
T d1edoa_         144 -------GNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK-LGEDMEKKI---LG-TIPL-----  206 (244)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT-TCHHHHHHH---HT-SCTT-----
T ss_pred             -------CCCCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH-hhHHHHHHH---Hh-cCCC-----
Confidence                   11134589999999999999999885   8999999999885442111 111111111   11 1112     


Q ss_pred             CccccHHHHHHHHHHhhcC
Q 040253          226 GQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       226 ~~~i~v~D~a~~~~~~l~~  244 (338)
                      .++...+|+|+++.+++.+
T Consensus       207 ~R~~~p~dvA~~v~fLa~S  225 (244)
T d1edoa_         207 GRTGQPENVAGLVEFLALS  225 (244)
T ss_dssp             CSCBCHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHCC
Confidence            4588899999999998643

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.80  E-value=6.1e-19  Score=146.36  Aligned_cols=197  Identities=13%  Similarity=0.135  Sum_probs=146.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCe-------EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYA-------VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--   76 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--   76 (338)
                      +.||||||++-||.+++++|+++|++       |.+.+|+.+..++.......  ...++..+.+|++|.+++.++++  
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~--~g~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA--EGALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh--cCCcEEEEEecCCCHHHHHHHHHHH
Confidence            34899999999999999999999987       88888987766655443322  22578899999999998877653  


Q ss_pred             -----CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCc
Q 040253           77 -----GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVY  142 (338)
Q Consensus        77 -----~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~  142 (338)
                           ++|++||+|+....     ...+.++..+++|+.++..+.+++.    +.+ ..++|++||...+.         
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~---------  149 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVAATK---------  149 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS---------
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEechhhcC---------
Confidence                 69999999986442     2234456789999999988877663    334 46899999986653         


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCC
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAH  219 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~  219 (338)
                                   +.+....|+.+|...+.+.+.++.++   |++++.+.||.+-.+.....                  
T Consensus       150 -------------~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~------------------  198 (240)
T d2bd0a1         150 -------------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV------------------  198 (240)
T ss_dssp             -------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC------------------
T ss_pred             -------------CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc------------------
Confidence                         11134589999999999999988774   89999999998865432110                  


Q ss_pred             CCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          220 YPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       220 ~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                       .......+...+|+|+++++++..+.
T Consensus       199 -~~~~~~~~~~PedvA~~v~~l~s~~~  224 (240)
T d2bd0a1         199 -DDEMQALMMMPEDIAAPVVQAYLQPS  224 (240)
T ss_dssp             -CSTTGGGSBCHHHHHHHHHHHHTSCT
T ss_pred             -CHhhHhcCCCHHHHHHHHHHHHcCCc
Confidence             00001235678999999999998754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.5e-19  Score=149.42  Aligned_cols=213  Identities=17%  Similarity=0.154  Sum_probs=146.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------   76 (338)
                      ..|++|||||++-||.++++.|+++|++|++.+|+.++.+.............++..+.+|++|++++.++++       
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999999999999999877666654433322222578999999999998877653       


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCC-CccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                      ++|++||+|+....     ...+.++..++.|+.+...+.+++    +..+ ...++|++||.+.+.  ..         
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~--~~---------  157 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR--VL---------  157 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS--CC---------
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcC--CC---------
Confidence            69999999986441     222345578889998888876654    2322 246999999976542  00         


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH-----cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE-----NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                               +......|+.+|...+.+.+.++.+     +++++.++-||.+-.+...............   ..  .  
T Consensus       158 ---------p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~---~~--~--  221 (257)
T d1xg5a_         158 ---------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAA---TY--E--  221 (257)
T ss_dssp             ---------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHH---HH--C--
T ss_pred             ---------CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHh---cC--C--
Confidence                     1112346999999999999988865     4799999999877433210000000001000   00  1  


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                         ..+++..+|+|+++++++..+.
T Consensus       222 ---~~r~~~pedvA~~v~fL~s~~a  243 (257)
T d1xg5a_         222 ---QMKCLKPEDVAEAVIYVLSTPA  243 (257)
T ss_dssp             ------CBCHHHHHHHHHHHHHSCT
T ss_pred             ---CCCCcCHHHHHHHHHHHhCChh
Confidence               1458899999999999987754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=4.5e-19  Score=149.09  Aligned_cols=208  Identities=14%  Similarity=0.111  Sum_probs=143.6

Q ss_pred             CCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            4 IAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      .+|++|||||+|  -||.+++++|++.|++|.+.+|+.+.....+......   .+...+.+|++|.+++.++++     
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL---GGALLFRADVTQDEELDALFAGVKEA   83 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhcc---CcccccccccCCHHHHHHHHHHHHHh
Confidence            478999999998  6999999999999999998888765544443332221   356789999999988877653     


Q ss_pred             --CccEEEEecccCC---------CCCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 --GCTGVFHLATPMD---------FESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 --~~d~vi~~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                        ++|++||+|+...         ....+.....+++|+.+...+.+++...- +..++|++||.....           
T Consensus        84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~-----------  152 (256)
T d1ulua_          84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK-----------  152 (256)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS-----------
T ss_pred             cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC-----------
Confidence              6999999998533         11112233567889999988888775432 135799999876542           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCC-hhHHHhhhhcccCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMP-PSLITALSPITRNEAHY  220 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~  220 (338)
                                 +.+....|+.+|.+.+.+.+.++.++   |+++..+.||.+..+....... .......   ... .++
T Consensus       153 -----------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~---~~~-~pl  217 (256)
T d1ulua_         153 -----------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRV---AQT-APL  217 (256)
T ss_dssp             -----------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHH---HHH-STT
T ss_pred             -----------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHH---Hhc-CCC
Confidence                       11234589999999999999999875   8999999999887654322111 1111111   111 112


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                           .++...+|+|+++++++...
T Consensus       218 -----~R~~~pedvA~~v~fL~S~~  237 (256)
T d1ulua_         218 -----RRNITQEEVGNLGLFLLSPL  237 (256)
T ss_dssp             -----SSCCCHHHHHHHHHHHHSGG
T ss_pred             -----CCCcCHHHHHHHHHHHhCch
Confidence                 45788999999999998653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.79  E-value=6.7e-19  Score=149.36  Aligned_cols=211  Identities=16%  Similarity=0.173  Sum_probs=146.2

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      |.-.+|++|||||++-||++++++|+++|++|++.+|+.+...++.....     .++..+.+|+++.+++.++++    
T Consensus         1 M~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~   75 (276)
T d1bdba_           1 MKLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG-----DNVLGIVGDVRSLEDQKQAASRCVA   75 (276)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-----CCeeEEecccccHHHHHHHHHHHHH
Confidence            66678999999999999999999999999999999998766555443322     578999999999988877653    


Q ss_pred             ---CccEEEEecccCCCCC------CC----ccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCceeeeccCCCCCC
Q 040253           77 ---GCTGVFHLATPMDFES------KD----PENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~~~------~~----~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                         ++|++||+||......      .+    .++..+++|+.++..+.+++...  .+..++|++||...+.        
T Consensus        76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~~~--------  147 (276)
T d1bdba_          76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAGFY--------  147 (276)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS--------
T ss_pred             HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechhcc--------
Confidence               7999999998543211      11    14567889999998887765321  0125788888865432        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc--CccEEEEcCCceeCCCCCCCCChhHHHh-----hhhcc
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN--NIDFISIIPSLVVGPFLTSSMPPSLITA-----LSPIT  214 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~ilRp~~v~G~~~~~~~~~~~~~~-----~~~~~  214 (338)
                                    +.+....|+.+|...+.+.+.++.++  ++++..|.||.|-.+.............     .....
T Consensus       148 --------------~~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~  213 (276)
T d1bdba_         148 --------------PNGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADML  213 (276)
T ss_dssp             --------------TTSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHH
T ss_pred             --------------CCCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHH
Confidence                          11134479999999999999998876  5899999999886543221100000000     00000


Q ss_pred             cCCCCCCCCCCCccccHHHHHHHHHHhhc
Q 040253          215 RNEAHYPIIKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       215 ~~~~~~~~~~~~~~i~v~D~a~~~~~~l~  243 (338)
                      ....+.     .++...+|+|+++++++.
T Consensus       214 ~~~~Pl-----gR~g~peeva~~v~fL~S  237 (276)
T d1bdba_         214 KSVLPI-----GRMPEVEEYTGAYVFFAT  237 (276)
T ss_dssp             TTTCTT-----SSCCCGGGGSHHHHHHHC
T ss_pred             HhcCCC-----CCCcCHHHHHHHHHHHcC
Confidence            111111     457889999999998875

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=1.7e-18  Score=146.07  Aligned_cols=213  Identities=16%  Similarity=0.167  Sum_probs=142.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHh-cCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLL-ELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||++-||.+++++|+++|++|++.+|+.+..++..... .......++..+.+|++|.+++.++++      
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999877665554432 222223579999999999998877664      


Q ss_pred             -CccEEEEecccCCCC---------CCCccchhhhhhhHHHHHHHHHHHhC--CCccEEEEecCce-eeeccCCCCCCcC
Q 040253           77 -GCTGVFHLATPMDFE---------SKDPENEVIRPTINGMVSIMRACKNA--KTVRRLVFTSSAG-TLDVEEHRKPVYD  143 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~--~~~~~~v~~Ss~~-v~~~~~~~~~~~~  143 (338)
                       ++|++||+||.....         ..+.++..+++|+.+...+.+++...  +....+|.++|.. ...          
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~~~~~----------  153 (264)
T d1spxa_          84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH----------  153 (264)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS----------
T ss_pred             CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeeeccccc----------
Confidence             799999999853210         11234567889999998887766432  1124566666543 221          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-----ChhHHHhhhhccc
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-----PPSLITALSPITR  215 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-----~~~~~~~~~~~~~  215 (338)
                                  +.+....|+.+|.+.+.+.+.++.++   |+++..|.||.+-.+......     .............
T Consensus       154 ------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~  221 (264)
T d1spxa_         154 ------------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKE  221 (264)
T ss_dssp             ------------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHH
T ss_pred             ------------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHh
Confidence                        11123479999999999999998875   899999999988654322110     0000000000001


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      . .+.     .++...+|+|+++++++..
T Consensus       222 ~-~Pl-----~R~g~pedvA~~v~fL~S~  244 (264)
T d1spxa_         222 C-VPA-----GVMGQPQDIAEVIAFLADR  244 (264)
T ss_dssp             H-CTT-----SSCBCHHHHHHHHHHHHCH
T ss_pred             c-CCC-----CCCcCHHHHHHHHHHHhCC
Confidence            1 111     4588899999999999863

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.78  E-value=3.8e-18  Score=144.43  Aligned_cols=212  Identities=17%  Similarity=0.159  Sum_probs=145.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcC-CCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLEL-PKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||++-||.++++.|++.|++|++.+|+.++.+........ .....++..+.+|++|++++.++++      
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999988776665544332 2223578999999999998877663      


Q ss_pred             -CccEEEEecccCCCCCC-----C----ccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCc-eeeeccCCCCCCc
Q 040253           77 -GCTGVFHLATPMDFESK-----D----PENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSA-GTLDVEEHRKPVY  142 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~~-----~----~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~-~v~~~~~~~~~~~  142 (338)
                       ++|++||+||.......     +    .++..+++|+.++..+.+++...   + ...+|.++|. +...         
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~Ss~a~~~---------  153 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQ---------  153 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGGGSSS---------
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccchhcccc---------
Confidence             69999999986442110     1    24456789999998888766432   1 2355555553 3221         


Q ss_pred             CCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-ChhHH-Hhhhh--ccc
Q 040253          143 DETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPSLI-TALSP--ITR  215 (338)
Q Consensus       143 ~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~~~-~~~~~--~~~  215 (338)
                                   +.+....|+.+|.+.+.+.+.++.++   |+++..|.||.+-.+...... ..... .....  ...
T Consensus       154 -------------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~  220 (272)
T d1xkqa_         154 -------------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHK  220 (272)
T ss_dssp             -------------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred             -------------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHh
Confidence                         11124579999999999999998775   899999999988654311110 11110 00000  011


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhc
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~  243 (338)
                      ...+.     .++...+|+|+++++++.
T Consensus       221 ~~~Pl-----gR~g~pediA~~v~fL~S  243 (272)
T d1xkqa_         221 ECIPI-----GAAGKPEHIANIILFLAD  243 (272)
T ss_dssp             TTCTT-----SSCBCHHHHHHHHHHHHC
T ss_pred             cCCCC-----CCCcCHHHHHHHHHHHhC
Confidence            11122     458889999999999985

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.77  E-value=2.4e-18  Score=145.70  Aligned_cols=211  Identities=16%  Similarity=0.172  Sum_probs=147.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHh-cCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLL-ELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+++||||++-||.+++++|++.|++|++.+|+.+..+...... +......++..+.+|++|++++.++++      
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999999999999999876655554332 222222478999999999998877663      


Q ss_pred             -CccEEEEecccCCCC-------CCCccchhhhhhhHHHHHHHHHHH----hCCCccEEEEecCceeeeccCCCCCCcCC
Q 040253           77 -GCTGVFHLATPMDFE-------SKDPENEVIRPTINGMVSIMRACK----NAKTVRRLVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                       ++|++||+||.....       ..+.++..+++|+.++..+.+++.    +.+ ..+++++||.....           
T Consensus        83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~ii~~ss~~~~~-----------  150 (274)
T d1xhla_          83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQ-----------  150 (274)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSS-----------
T ss_pred             CCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccc-cccccchhhhhccc-----------
Confidence             689999999853211       112345678899999988877664    333 46777777754332           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC-Chh----HHHhhhhcccC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM-PPS----LITALSPITRN  216 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~-~~~----~~~~~~~~~~~  216 (338)
                                 +......|+.+|...+.+.+.++.++   |++++.+.||.+-.+...... ...    ....... ...
T Consensus       151 -----------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-~~~  218 (274)
T d1xhla_         151 -----------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGS-RKE  218 (274)
T ss_dssp             -----------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHH-CTT
T ss_pred             -----------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHH-HHc
Confidence                       11124489999999999999988875   899999999998654311111 111    1111111 111


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhc
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~  243 (338)
                      ..++     .++...+|+|+++++++.
T Consensus       219 ~iPl-----gR~g~pediA~~v~fL~S  240 (274)
T d1xhla_         219 CIPV-----GHCGKPEEIANIIVFLAD  240 (274)
T ss_dssp             TCTT-----SSCBCHHHHHHHHHHHHC
T ss_pred             CCCC-----CCCcCHHHHHHHHHHHcC
Confidence            1122     458899999999999985

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5e-19  Score=147.00  Aligned_cols=198  Identities=11%  Similarity=0.045  Sum_probs=146.9

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      -.+|+|+||||++-||.+++++|+++|++|++.+|+.++.++.......  .++++..+.+|++|++++.++++      
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~--~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG--LGAKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            3579999999999999999999999999999999988776665443322  22678999999999998877653      


Q ss_pred             -CccEEEEecccCCCCCC-----CccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFESK-----DPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+||.......     +..+..+++|+.+..++.+++    .+.+ ..++|++||.....             
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~~-------------  148 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHV-------------  148 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CC-------------
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhcC-------------
Confidence             69999999986542211     224578899999998887755    3444 57999999987653             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH------cCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE------NNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                               +.+....|+.+|.+.+.+.+.++.+      .|++++++.||.+--+....    ...             
T Consensus       149 ---------~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~----~~~-------------  202 (244)
T d1yb1a_         149 ---------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN----PST-------------  202 (244)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC----THH-------------
T ss_pred             ---------CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhC----cCc-------------
Confidence                     1112347999999999999998876      37999999999874432111    000             


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCC
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                         .....+..+|+++.+...+...
T Consensus       203 ---~~~~~~~pe~va~~i~~~~~~~  224 (244)
T d1yb1a_         203 ---SLGPTLEPEEVVNRLMHGILTE  224 (244)
T ss_dssp             ---HHCCCCCHHHHHHHHHHHHHTT
T ss_pred             ---cccCCCCHHHHHHHHHHHHhcC
Confidence               0023556899999998887664

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.77  E-value=2e-18  Score=144.53  Aligned_cols=211  Identities=17%  Similarity=0.105  Sum_probs=147.9

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-------Ccc
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-------GCT   79 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-------~~d   79 (338)
                      ++|||||++.||..++++|++.|++|.+.+|+.+..+.++....        ....+|++|.+++.++++       ++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~--------~~~~~dv~~~~~~~~~~~~~~~~~G~iD   73 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAE--------TYPQLKPMSEQEPAELIEAVTSAYGQVD   73 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHH--------HCTTSEECCCCSHHHHHHHHHHHHSCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhC--------cEEEeccCCHHHHHHHHHHHHHHcCCCC
Confidence            78999999999999999999999999999998877776655422        345689999988877653       799


Q ss_pred             EEEEecccCCC-C-----CCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           80 GVFHLATPMDF-E-----SKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        80 ~vi~~a~~~~~-~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                      ++||+|+.... .     ..+.++..+++|+.+...+.+++    ++.+ -.++|++||...+.                
T Consensus        74 iLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~----------------  136 (252)
T d1zmta1          74 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG----------------  136 (252)
T ss_dssp             EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS----------------
T ss_pred             EEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccccccccc----------------
Confidence            99999985321 1     11234567788999988877765    3334 46899999976553                


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHH----HhhhhcccCCCCCCC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLI----TALSPITRNEAHYPI  222 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~----~~~~~~~~~~~~~~~  222 (338)
                            +.+....|+.+|...+.+.+.++.++   |+++.+|.||.+-.+...........    ...... .+..++  
T Consensus       137 ------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~-~~~~pl--  207 (252)
T d1zmta1         137 ------PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHV-KKVTAL--  207 (252)
T ss_dssp             ------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHH-HHHSSS--
T ss_pred             ------ccccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHH-HhcCCC--
Confidence                  11123589999999999999998875   89999999999976643322111100    000000 111111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCCC--CC-ceEEe
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPNA--KG-RYICS  254 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~~--~~-~~~~~  254 (338)
                         .++...+|+|+++++++.....  .| .+.+.
T Consensus       208 ---~R~g~pedvA~~v~fL~S~~s~~iTG~~i~vd  239 (252)
T d1zmta1         208 ---QRLGTQKELGELVAFLASGSCDYLTGQVFWLA  239 (252)
T ss_dssp             ---SSCBCHHHHHHHHHHHHTTSCGGGTTCEEEES
T ss_pred             ---CCCcCHHHHHHHHHHHhCchhcCCcCCeEEEC
Confidence               3588999999999999965432  34 44453

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.5e-19  Score=146.00  Aligned_cols=219  Identities=15%  Similarity=0.155  Sum_probs=149.8

Q ss_pred             CC-CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh---C
Q 040253            1 MG-SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI---R   76 (338)
Q Consensus         1 m~-~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~   76 (338)
                      |. -.+|++|||||++-||+++++.|+++|++|++.+|++++.+++   .+    ..+++...+|+.+.+.+....   .
T Consensus         1 m~~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~---~~----~~~~~~~~~d~~~~~~~~~~~~~~~   73 (245)
T d2ag5a1           1 MGRLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL---EK----YPGIQTRVLDVTKKKQIDQFANEVE   73 (245)
T ss_dssp             CCTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG---GG----STTEEEEECCTTCHHHHHHHHHHCS
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH---Hh----ccCCceeeeeccccccccccccccc
Confidence            55 3579999999999999999999999999999999986544332   22    156888888987766555443   4


Q ss_pred             CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHh----CCCccEEEEecCceeeeccCCCCCCcCCCCC
Q 040253           77 GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKN----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSW  147 (338)
Q Consensus        77 ~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~  147 (338)
                      ++|++||+||....     ...+.++..+++|+.++..+.+++..    .+ ..++|++||...--      .       
T Consensus        74 ~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~~------~-------  139 (245)
T d2ag5a1          74 RLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASSV------K-------  139 (245)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTT------B-------
T ss_pred             cceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC-Cceeeeeechhhcc------C-------
Confidence            79999999986542     12234567889999999988876643    33 46899999853210      0       


Q ss_pred             CchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCC--ChhHHHhhhhcccCCCCCCC
Q 040253          148 SDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSM--PPSLITALSPITRNEAHYPI  222 (338)
Q Consensus       148 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~  222 (338)
                              +......|+.+|...+.+++.++.++   |+++.+|.||.+-.|......  .............. .+.  
T Consensus       140 --------~~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~-~pl--  208 (245)
T d2ag5a1         140 --------GVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKR-QKT--  208 (245)
T ss_dssp             --------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHT-CTT--
T ss_pred             --------CccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhc-CCC--
Confidence                    11244589999999999999999885   899999999998765321000  00000001101111 111  


Q ss_pred             CCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe
Q 040253          223 IKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS  254 (338)
Q Consensus       223 ~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~  254 (338)
                         .++...+|+++++.+++....  ..| .+.+.
T Consensus       209 ---~R~~~pedva~~v~fL~s~~s~~iTG~~i~VD  240 (245)
T d2ag5a1         209 ---GRFATAEEIAMLCVYLASDESAYVTGNPVIID  240 (245)
T ss_dssp             ---SSCEEHHHHHHHHHHHHSGGGTTCCSCEEEEC
T ss_pred             ---CCCcCHHHHHHHHHHHhChhhCCCcCceEEeC
Confidence               468899999999999997543  244 34443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.77  E-value=9e-18  Score=142.25  Aligned_cols=213  Identities=16%  Similarity=0.111  Sum_probs=145.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||++-||..++++|+++|++|++.+|+.+. .+.......  ....++..+.+|++|++++.+.++      
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~--~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK--KNGSDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHH--hhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            46999999999999999999999999999999887543 232222211  112578999999999988877654      


Q ss_pred             -CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCCc
Q 040253           77 -GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSD  149 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~  149 (338)
                       ++|++||+++....     ...+.....++.|+.++..+.+++...- ...+.++++|.....  .             
T Consensus        95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~--~-------------  159 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA--K-------------  159 (272)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC--S-------------
T ss_pred             CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc--c-------------
Confidence             68999999985442     2223345678889999999888775432 235778887754221  0             


Q ss_pred             hhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCC--------C--CCCChhHHHhhhhcccC
Q 040253          150 LDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFL--------T--SSMPPSLITALSPITRN  216 (338)
Q Consensus       150 ~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~--------~--~~~~~~~~~~~~~~~~~  216 (338)
                            +......|+.+|.+.+.+.+.++.++   |++++.|.||.+-.+..        .  .............  ..
T Consensus       160 ------~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  231 (272)
T d1g0oa_         160 ------AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAA--VQ  231 (272)
T ss_dssp             ------SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHH--HH
T ss_pred             ------cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHH--Hc
Confidence                  11234579999999999999998875   89999999998854320        0  0000000000000  01


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCC
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ..+.     .++...+|+|.++++++....
T Consensus       232 ~~Pl-----gR~~~peevA~~v~fL~s~~s  256 (272)
T d1g0oa_         232 WSPL-----RRVGLPIDIARVVCFLASNDG  256 (272)
T ss_dssp             SCTT-----CSCBCHHHHHHHHHHHHSGGG
T ss_pred             cCCC-----CCCcCHHHHHHHHHHHhCchh
Confidence            1111     468899999999999996543

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.76  E-value=1.3e-18  Score=146.66  Aligned_cols=206  Identities=16%  Similarity=0.151  Sum_probs=143.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhc-CCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      ..+||||||+|.||.+++++|+++|+ +|++++|+..+.+..+.+.. +.....++.++.+|++|.+++.++++      
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~   88 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV   88 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence            46999999999999999999999998 58888886433222222111 11122579999999999988877664      


Q ss_pred             CccEEEEecccCCCCCC-----CccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCCcCCCCCCchh
Q 040253           77 GCTGVFHLATPMDFESK-----DPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLD  151 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~  151 (338)
                      .+|.|||+++.......     +.....+..|+.+..++.+++...+ ..++|++||.....  .               
T Consensus        89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~-~~~iv~~SS~a~~~--g---------------  150 (259)
T d2fr1a1          89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELD-LTAFVLFSSFASAF--G---------------  150 (259)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSC-CSEEEEEEEHHHHT--C---------------
T ss_pred             cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccC-CceEeeecchhhcc--C---------------
Confidence            48999999986552211     2234567889999999999888777 78999999976653  1               


Q ss_pred             hhhhccCCCchHHHHHHHHHHHHHHHHHHcCccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccH
Q 040253          152 FVRSVKMTGWMYFVSKTLAEQAAWKFAEENNIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHL  231 (338)
Q Consensus       152 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v  231 (338)
                           ......|+.+|...+.+.++++. .|++++.|.||.+.+++....   .....+   ...        ....+..
T Consensus       151 -----~~~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~~---~~~~~~---~~~--------G~~~~~~  210 (259)
T d2fr1a1         151 -----APGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEG---PVADRF---RRH--------GVIEMPP  210 (259)
T ss_dssp             -----CTTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC---------------C---TTT--------TEECBCH
T ss_pred             -----CcccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCccccc---hHHHHH---Hhc--------CCCCCCH
Confidence                 11344799999999998887765 599999999998877653211   010000   000        1346789


Q ss_pred             HHHHHHHHHhhcCCCCC
Q 040253          232 DDLCSAHIFLFEHPNAK  248 (338)
Q Consensus       232 ~D~a~~~~~~l~~~~~~  248 (338)
                      +++++++..++.+....
T Consensus       211 ~~~~~~l~~~l~~~~~~  227 (259)
T d2fr1a1         211 ETACRALQNALDRAEVC  227 (259)
T ss_dssp             HHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHhCCCce
Confidence            99999999999876543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.76  E-value=5.6e-18  Score=142.44  Aligned_cols=223  Identities=15%  Similarity=0.086  Sum_probs=148.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|+||||||+|-||.++++.|++.|++|++..|+... .+........  ...++..+.+|++|.+++.+.++      
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~--~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK--LGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH--cCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            36999999999999999999999999999987765443 3333332221  12578999999999988877654      


Q ss_pred             -CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCcee-eeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGT-LDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v-~~~~~~~~~~~~e~~~~  148 (338)
                       ++|++||+||....     ...+.++..+++|+.+...+.+++..+- +..+++.++|.+. ..               
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~---------------  147 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMT---------------  147 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCC---------------
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccccc---------------
Confidence             69999999986542     1223345788999999988888775431 1346666666432 21               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCC--------CC-CCChhHHHhhhhcccC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFL--------TS-SMPPSLITALSPITRN  216 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~--------~~-~~~~~~~~~~~~~~~~  216 (338)
                             +.+....|+.+|.+.+.+.+.++.++   |+++.+|.||.+-.+..        .. ................
T Consensus       148 -------~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (259)
T d1ja9a_         148 -------GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM  220 (259)
T ss_dssp             -------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT
T ss_pred             -------CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhC
Confidence                   01123489999999999999999875   89999999998853310        00 0000001111111111


Q ss_pred             CCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEecC
Q 040253          217 EAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSSH  256 (338)
Q Consensus       217 ~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~~  256 (338)
                       .+.     .++...+|+++++.+++....  ..| .+.+.+.
T Consensus       221 -~pl-----~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG  257 (259)
T d1ja9a_         221 -NPL-----KRIGYPADIGRAVSALCQEESEWINGQVIKLTGG  257 (259)
T ss_dssp             -STT-----SSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             -CCC-----CCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCC
Confidence             111     468899999999999997544  244 4555443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.75  E-value=1.1e-17  Score=143.39  Aligned_cols=220  Identities=13%  Similarity=0.058  Sum_probs=143.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH-HhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH-LLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      .+|++|||||+|.||.+++++|++.|++|++.+|+.++...... +....  ..++..+.+|+++.+++.+++.      
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~--g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT--GNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc--CCceEEEEecccChHHHHHHhhhhhhhc
Confidence            35999999999999999999999999999999998765444322 22111  1467899999999988776553      


Q ss_pred             -CccEEEEecccCCCCCC-----CccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDFESK-----DPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~~-----~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       ++|++||+|+.......     ......+..|......+...+    ........++.+||.....             
T Consensus       102 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~-------------  168 (294)
T d1w6ua_         102 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET-------------  168 (294)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH-------------
T ss_pred             cccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh-------------
Confidence             79999999986542211     123345666776666654433    2222245677777654332             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                               .......|+.+|.+.+.+.+.++.++   |+++.+|.||.+-.+.........-.. .... ....+.   
T Consensus       169 ---------~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~-~~~~-~~~~pl---  234 (294)
T d1w6ua_         169 ---------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTF-EKEM-IGRIPC---  234 (294)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHH-HHHH-HTTCTT---
T ss_pred             ---------cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHH-HHHH-hhcCCC---
Confidence                     11134479999999999999999875   899999999999766432211111000 0000 111111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS  254 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~  254 (338)
                        .++...+|+|+++.+++....  ..| ...+.
T Consensus       235 --~R~~~pediA~~v~fL~sd~s~~itG~~i~vD  266 (294)
T d1w6ua_         235 --GRLGTVEELANLAAFLCSDYASWINGAVIKFD  266 (294)
T ss_dssp             --SSCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred             --CCCCCHHHHHHHHHHHhCchhcCCCCcEEEEC
Confidence              458889999999999996533  344 44453

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=1e-17  Score=139.99  Aligned_cols=169  Identities=17%  Similarity=0.175  Sum_probs=126.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHH---CCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----
Q 040253            5 AETVCVTGASGFIGSWLIMRLLE---RGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----   76 (338)
                      ||+||||||++-||.+++++|++   .|++|++.+|+.++.+.++.+....   +++.++.+|++|++++.++++     
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~i~~~   78 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH---SNIHILEIDLRNFDAYDKLVADIEGV   78 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC---TTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcC---CcEEEEEEEeccHHHHHHHHhhhHHH
Confidence            78999999999999999999974   6899999999988877666544322   689999999999998876542     


Q ss_pred             ----CccEEEEecccCCCC------CCCccchhhhhhhHHHHHHHHHHHhC---------------CCccEEEEecCcee
Q 040253           77 ----GCTGVFHLATPMDFE------SKDPENEVIRPTINGMVSIMRACKNA---------------KTVRRLVFTSSAGT  131 (338)
Q Consensus        77 ----~~d~vi~~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~---------------~~~~~~v~~Ss~~v  131 (338)
                          ++|++||+||.....      ..+..+..+++|+.+...+.+++...               + ..++|++||...
T Consensus        79 ~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~-~g~ii~i~S~~g  157 (248)
T d1snya_          79 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVG-RAAIINMSSILG  157 (248)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTT-TCEEEEECCGGG
T ss_pred             hhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccc-cccccccccccc
Confidence                589999999864321      11123467889999998887765321               2 468999998643


Q ss_pred             eeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCC
Q 040253          132 LDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGP  196 (338)
Q Consensus       132 ~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~  196 (338)
                      .-  ..  .               +......|+.||.+...+.+.++.++   |++++.+.||.+--+
T Consensus       158 ~~--~~--~---------------~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~  206 (248)
T d1snya_         158 SI--QG--N---------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD  206 (248)
T ss_dssp             CS--TT--C---------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred             cc--CC--C---------------CCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence            21  00  0               11234489999999999998888765   799999999988543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.5e-17  Score=139.24  Aligned_cols=221  Identities=17%  Similarity=0.131  Sum_probs=145.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEE---cCCCcHHHHHHHh-cCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATV---RDPDNKKKVKHLL-ELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~---r~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      .|.||||||++-||.+++++|++.|.+|+.+.   |+.+....+.... .......++..+.+|++|.+++.++++    
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            35678999999999999999999997755544   4444444443322 223334689999999999998877663    


Q ss_pred             -CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCCCC
Q 040253           77 -GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDETS  146 (338)
Q Consensus        77 -~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~  146 (338)
                       .+|+++|+|+....     ...+..+..+++|+.++.++.+++    ++.+ ..++|++||.....             
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS~~g~~-------------  147 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLM-------------  147 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTS-------------
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEechhhcC-------------
Confidence             58999999985442     222345578889999998887765    3444 57999999976542             


Q ss_pred             CCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHH-----------Hhhhh
Q 040253          147 WSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLI-----------TALSP  212 (338)
Q Consensus       147 ~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~-----------~~~~~  212 (338)
                               +.+....|+.+|.+.+.+.+.++.+.   |+++++|.||.+--+.........-.           .....
T Consensus       148 ---------~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (285)
T d1jtva_         148 ---------GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQY  218 (285)
T ss_dssp             ---------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHH
T ss_pred             ---------CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHH
Confidence                     11234589999999999999998875   89999999998865432211110000           00000


Q ss_pred             c-ccCCCCCCCCCCCccccHHHHHHHHHHhhcCCCCCCceEE
Q 040253          213 I-TRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPNAKGRYIC  253 (338)
Q Consensus       213 ~-~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~~~~~  253 (338)
                      . ......     .......+|+|++++.+++.+.+.-.|..
T Consensus       219 ~~~~~~~~-----~~~~~~PeeVA~~v~~~~~~~~p~~ry~~  255 (285)
T d1jtva_         219 LAHSKQVF-----REAAQNPEEVAEVFLTALRAPKPTLRYFT  255 (285)
T ss_dssp             HHHHHHHH-----HHHCBCHHHHHHHHHHHHHCSSCCSEEES
T ss_pred             HHHHhhhh-----cccCCCHHHHHHHHHHHHhCCCCCeEEec
Confidence            0 000000     01255789999999999988655444543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2.1e-17  Score=141.42  Aligned_cols=198  Identities=19%  Similarity=0.127  Sum_probs=137.3

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc------HHHHHHHhcCCCCCCcEEEEecccCCCCCchhh
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN------KKKVKHLLELPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      |.-.+|++|||||++.||.+++++|+++|++|++.+|+.+.      ....+.+.....  .....+.+|+.|.++..++
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~   80 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR--RRGGKAVANYDSVEAGEKL   80 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHH--HTTCEEEEECCCGGGHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHh--hcccccccccchHHHHHHH
Confidence            44457999999999999999999999999999999875431      111211111000  1234566788888776665


Q ss_pred             hC-------CccEEEEecccCCC-----CCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCC
Q 040253           75 IR-------GCTGVFHLATPMDF-----ESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHR  138 (338)
Q Consensus        75 ~~-------~~d~vi~~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~  138 (338)
                      ++       ++|++||+||....     ...+.++..+++|+.++..+.+++    ++.+ ..++|++||.+...     
T Consensus        81 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~~~-----  154 (302)
T d1gz6a_          81 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASGIY-----  154 (302)
T ss_dssp             HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHHHH-----
T ss_pred             HHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhhcC-----
Confidence            43       79999999986442     122345678899999999888765    3334 47999999987653     


Q ss_pred             CCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhccc
Q 040253          139 KPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITR  215 (338)
Q Consensus       139 ~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~  215 (338)
                                       +......|+.+|...+.+.+.++.+.   |++++++-||.+--+.. ..+...          
T Consensus       155 -----------------~~~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~-~~~~~~----------  206 (302)
T d1gz6a_         155 -----------------GNFGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTE-TVMPED----------  206 (302)
T ss_dssp             -----------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTG-GGSCHH----------
T ss_pred             -----------------CCCCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchh-hcCcHh----------
Confidence                             11134589999999999999999885   89999999986521110 000000          


Q ss_pred             CCCCCCCCCCCccccHHHHHHHHHHhhc
Q 040253          216 NEAHYPIIKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       216 ~~~~~~~~~~~~~i~v~D~a~~~~~~l~  243 (338)
                               ..+.+..+|+|.++++++.
T Consensus       207 ---------~~~~~~PedvA~~v~fL~S  225 (302)
T d1gz6a_         207 ---------LVEALKPEYVAPLVLWLCH  225 (302)
T ss_dssp             ---------HHHHSCGGGTHHHHHHHTS
T ss_pred             ---------hHhcCCHHHHHHHHHHHcC
Confidence                     0234567999999999885

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.72  E-value=4.1e-17  Score=136.40  Aligned_cols=202  Identities=17%  Similarity=0.184  Sum_probs=135.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+||||||++-||.+++++|+++|+  +|++.+|+.+..+.+....     ..++.++.+|++|.+++.++++      
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~-----~~~~~~~~~Dvs~~~~v~~~~~~i~~~~   77 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK-----DSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCC-----CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhh-----CCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence            48999999999999999999999984  7888899877665544321     2579999999999988776542      


Q ss_pred             ---CccEEEEecccCCC-C--C---CCccchhhhhhhHHHHHHHHHHHh----CC----------CccEEEEecCceeee
Q 040253           77 ---GCTGVFHLATPMDF-E--S---KDPENEVIRPTINGMVSIMRACKN----AK----------TVRRLVFTSSAGTLD  133 (338)
Q Consensus        77 ---~~d~vi~~a~~~~~-~--~---~~~~~~~~~~n~~~~~~l~~~~~~----~~----------~~~~~v~~Ss~~v~~  133 (338)
                         ++|++||+||.... .  .   .+..+..+++|+.++..+.+++..    .+          ...+++.+|+....-
T Consensus        78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~  157 (250)
T d1yo6a1          78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI  157 (250)
T ss_dssp             GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred             CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccc
Confidence               38999999986431 1  1   122346889999999988777532    10          124677777654432


Q ss_pred             ccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhh
Q 040253          134 VEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITAL  210 (338)
Q Consensus       134 ~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~  210 (338)
                      ......               ....+...|+.||.+...+.+.++.++   |++++++-||.|--+-.            
T Consensus       158 ~~~~~~---------------~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~------------  210 (250)
T d1yo6a1         158 TDNTSG---------------SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLG------------  210 (250)
T ss_dssp             TTCCST---------------TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-----------------
T ss_pred             cCCccc---------------ccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCC------------
Confidence            111100               011244579999999999999999875   89999999987742210            


Q ss_pred             hhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCCce
Q 040253          211 SPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKGRY  251 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~~  251 (338)
                          +.         ...+..++.++.++..+....  ..|.|
T Consensus       211 ----~~---------~~~~~~e~~a~~~~~~~~~~~~~~sG~f  240 (250)
T d1yo6a1         211 ----GK---------NAALTVEQSTAELISSFNKLDNSHNGRF  240 (250)
T ss_dssp             ---------------------HHHHHHHHHHHTTCCGGGTTCE
T ss_pred             ----CC---------CCCCCHHHHHHHHHHHHhcCCCCCCeEE
Confidence                00         113457888888888886533  24555

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3.2e-18  Score=144.07  Aligned_cols=210  Identities=18%  Similarity=0.158  Sum_probs=146.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHH---CCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC----
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLE---RGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR----   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----   76 (338)
                      .+|.++||||++.||.+++++|++   +|++|++++|+.+..+.+...........++..+.+|++|++++.++++    
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            368899999999999999999986   6999999999887766654433222222578999999999988777652    


Q ss_pred             -------CccEEEEecccCCCC--------CCCccchhhhhhhHHHHHHHHHHHhCC-----CccEEEEecCceeeeccC
Q 040253           77 -------GCTGVFHLATPMDFE--------SKDPENEVIRPTINGMVSIMRACKNAK-----TVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        77 -------~~d~vi~~a~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~~~v~~Ss~~v~~~~~  136 (338)
                             ..|++||+||.....        ..+.++..+++|+.+...+.+++...-     ...++|++||...+.   
T Consensus        85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~---  161 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ---  161 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS---
T ss_pred             hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC---
Confidence                   467999999854311        112344678899999999988775431     135899999976542   


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-CccEEEEcCCceeCCCCCC----CCChhHHHhhh
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-NIDFISIIPSLVVGPFLTS----SMPPSLITALS  211 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-~~~~~ilRp~~v~G~~~~~----~~~~~~~~~~~  211 (338)
                                         +.+....|+.+|...+.+.+.++.+. |+++..+.||.+-.+....    .........+.
T Consensus       162 -------------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~  222 (259)
T d1oaaa_         162 -------------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQ  222 (259)
T ss_dssp             -------------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHH
T ss_pred             -------------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHH
Confidence                               11234589999999999999998775 8999999999886542110    00000000000


Q ss_pred             hcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          212 PITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       212 ~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      ..    ..     ...+...+|+|++++.+++.
T Consensus       223 ~~----~~-----~~r~~~p~evA~~i~~ll~~  246 (259)
T d1oaaa_         223 KL----KS-----DGALVDCGTSAQKLLGLLQK  246 (259)
T ss_dssp             HH----HH-----TTCSBCHHHHHHHHHHHHHH
T ss_pred             hc----CC-----CCCCCCHHHHHHHHHHHhhh
Confidence            00    00     03467899999999998864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-16  Score=131.66  Aligned_cols=206  Identities=15%  Similarity=0.146  Sum_probs=143.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~   76 (338)
                      .+|++|||||++.||.+++++|+++|++|++++|+.+..+.......     .+......|+.+.+.+.+..       .
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGKFG   78 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC-----CCcccccccccccccccccccccccccc
Confidence            57999999999999999999999999999999999887766544332     46788888998876655443       3


Q ss_pred             CccEEEEecccCCCC-----------CCCccchhhhhhhHHHHHHHHHHHhC---------CCccEEEEecCceeeeccC
Q 040253           77 GCTGVFHLATPMDFE-----------SKDPENEVIRPTINGMVSIMRACKNA---------KTVRRLVFTSSAGTLDVEE  136 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----------~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~~v~~Ss~~v~~~~~  136 (338)
                      ..|.++++++.....           ..+..+..+++|+.++.++.+++...         ....++|++||...+.   
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~---  155 (248)
T d2o23a1          79 RVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE---  155 (248)
T ss_dssp             CCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH---
T ss_pred             cccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc---
Confidence            678888887532211           11234467889999999988876332         1135899999987653   


Q ss_pred             CCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhc
Q 040253          137 HRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPI  213 (338)
Q Consensus       137 ~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~  213 (338)
                                         +.+....|+.+|.+.+.+.+.++.++   |+++..+.||.+..+..... .....   ...
T Consensus       156 -------------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~~-~~~~~---~~~  212 (248)
T d2o23a1         156 -------------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL-PEKVC---NFL  212 (248)
T ss_dssp             -------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC--------------CHH
T ss_pred             -------------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhcC-CHHHH---HHH
Confidence                               11234589999999999999999886   89999999998865542211 11110   001


Q ss_pred             ccCCCCCCCCCCCccccHHHHHHHHHHhhcCC
Q 040253          214 TRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       214 ~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                      ....+..     .++...+|+|++++++++..
T Consensus       213 ~~~~pl~-----~R~g~peevA~~v~fL~s~~  239 (248)
T d2o23a1         213 ASQVPFP-----SRLGDPAEYAHLVQAIIENP  239 (248)
T ss_dssp             HHTCSSS-----CSCBCHHHHHHHHHHHHHCT
T ss_pred             HhcCCCC-----CCCcCHHHHHHHHHHHHhCC
Confidence            1111111     35778999999999998753

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.4e-16  Score=132.43  Aligned_cols=217  Identities=14%  Similarity=0.094  Sum_probs=144.6

Q ss_pred             CCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh------
Q 040253            4 IAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI------   75 (338)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~------   75 (338)
                      .+|+||||||+|  -||.++++.|++.|++|++.+|+.+.....+.+....   .+...+..|+.+..+....+      
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELGKV   80 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhc---CCcceeecccchHHHHHHHHHHhhhc
Confidence            479999999998  7999999999999999999999876655554443322   35677788888876655544      


Q ss_pred             -CCccEEEEecccCCCCCC----------CccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcC
Q 040253           76 -RGCTGVFHLATPMDFESK----------DPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYD  143 (338)
Q Consensus        76 -~~~d~vi~~a~~~~~~~~----------~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~  143 (338)
                       ...|++||+++.......          +........|+.+...+.+++...- +...+|++||.....          
T Consensus        81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~----------  150 (258)
T d1qsga_          81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  150 (258)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred             ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc----------
Confidence             268999999975431111          1122345566666666666665432 235688888865432          


Q ss_pred             CCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCC
Q 040253          144 ETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHY  220 (338)
Q Consensus       144 e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~  220 (338)
                                  +.+....|+.+|.+.+.+.+.++.++   |+++.++.||.+..+...........  ....... .+.
T Consensus       151 ------------~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~--~~~~~~~-~pl  215 (258)
T d1qsga_         151 ------------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKM--LAHCEAV-TPI  215 (258)
T ss_dssp             ------------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHH--HHHHHHH-STT
T ss_pred             ------------CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhH--HHHHHhC-CCC
Confidence                        11134579999999999999999886   79999999999976653321111111  1111111 111


Q ss_pred             CCCCCCccccHHHHHHHHHHhhcCCC--CCCc-eEE
Q 040253          221 PIIKQGQFVHLDDLCSAHIFLFEHPN--AKGR-YIC  253 (338)
Q Consensus       221 ~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~~-~~~  253 (338)
                           .++...+|+|.++.+++....  ..|. +.+
T Consensus       216 -----~R~~~peeia~~v~fL~s~~s~~itG~~i~v  246 (258)
T d1qsga_         216 -----RRTVTIEDVGNSAAFLCSDLSAGISGEVVHV  246 (258)
T ss_dssp             -----SSCCCHHHHHHHHHHHTSGGGTTCCSCEEEE
T ss_pred             -----CCCcCHHHHHHHHHHHhCchhcCccCceEEE
Confidence                 458889999999999996433  3454 444

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.8e-16  Score=134.38  Aligned_cols=212  Identities=14%  Similarity=0.048  Sum_probs=138.4

Q ss_pred             CcEE-EEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------
Q 040253            5 AETV-CVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------   76 (338)
Q Consensus         5 ~~~i-lVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------   76 (338)
                      +|+| |||||++-||.+++++|+++ |++|++.+|+.++.+........  ...++.++.+|++|.+++.++++      
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~--~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA--EGLSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH--TTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh--cCCcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            4665 89999999999999999986 89999999988776554332221  12578999999999988876653      


Q ss_pred             -CccEEEEecccCCCCC-CC----ccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCC---------
Q 040253           77 -GCTGVFHLATPMDFES-KD----PENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKP---------  140 (338)
Q Consensus        77 -~~d~vi~~a~~~~~~~-~~----~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~---------  140 (338)
                       ++|++||+||...... .+    ..+..+++|+.++..+.+++...- ...++|++||...........+         
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~~  159 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSE  159 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCS
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhccc
Confidence             6999999999654211 11    233578899999999998876531 1358999999755321110000         


Q ss_pred             CcCCCCCC----------chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-------CccEEEEcCCceeCCCCCCCCC
Q 040253          141 VYDETSWS----------DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-------NIDFISIIPSLVVGPFLTSSMP  203 (338)
Q Consensus       141 ~~~e~~~~----------~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------~~~~~ilRp~~v~G~~~~~~~~  203 (338)
                      ...+....          ..........+...|+.||.....+.+.++++.       +++++.+-||.|--+-...   
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~---  236 (275)
T d1wmaa1         160 TITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP---  236 (275)
T ss_dssp             SCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT---
T ss_pred             ccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccC---
Confidence            00000000          000000122345689999999888776655442       8999999999875332100   


Q ss_pred             hhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhc
Q 040253          204 PSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFE  243 (338)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~  243 (338)
                                            ......+|.|+.++++..
T Consensus       237 ----------------------~~~~~pee~A~~~~~~a~  254 (275)
T d1wmaa1         237 ----------------------KATKSPEEGAETPVYLAL  254 (275)
T ss_dssp             ----------------------TCSBCHHHHTHHHHHHHS
T ss_pred             ----------------------cccCCHHHHHHHHHHHHc
Confidence                                  113357889988888754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.3e-16  Score=129.61  Aligned_cols=190  Identities=16%  Similarity=0.104  Sum_probs=132.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh-------hhC-
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE-------PIR-   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-------~~~-   76 (338)
                      +|+||||||+|.||.+++++|+++|++|.+++|+.....            .....+..|..+.++...       .+. 
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------------SASVIVKMTDSFTEQADQVTAEVGKLLGD   69 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------------SEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------------cccceeecccCcHHHHHHHHHHHHHHhCC
Confidence            689999999999999999999999999999988654321            233445555554433322       222 


Q ss_pred             -CccEEEEecccCC---CCCC---CccchhhhhhhHHHHHHHHHHHhC-CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 -GCTGVFHLATPMD---FESK---DPENEVIRPTINGMVSIMRACKNA-KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 -~~d~vi~~a~~~~---~~~~---~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                       ++|++||+||...   ....   +..+..++.|+.+..++.+++..+ +...++|++||.....               
T Consensus        70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~---------------  134 (236)
T d1dhra_          70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD---------------  134 (236)
T ss_dssp             CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS---------------
T ss_pred             CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC---------------
Confidence             5899999998432   1111   223456889999998888776543 2246899999976552               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                             +.+....|+.||.+.+.+.+.++.+.     |++++.+.||.+.-+..        ..    .... .     
T Consensus       135 -------~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~--------~~----~~~~-~-----  189 (236)
T d1dhra_         135 -------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMN--------RK----SMPE-A-----  189 (236)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHH--------HH----HSTT-S-----
T ss_pred             -------CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcc--------hh----hCcc-c-----
Confidence                   11134589999999999999998763     69999999998864321        00    0011 0     


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN  246 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~  246 (338)
                      ....++..+++++.+..++....
T Consensus       190 ~~~~~~~pe~va~~~~~l~s~~~  212 (236)
T d1dhra_         190 DFSSWTPLEFLVETFHDWITGNK  212 (236)
T ss_dssp             CGGGSEEHHHHHHHHHHHHTTTT
T ss_pred             hhhcCCCHHHHHHHHHHHhCCCc
Confidence            11347889999999999987543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=1.3e-15  Score=126.45  Aligned_cols=204  Identities=17%  Similarity=0.168  Sum_probs=137.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC------Ccc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR------GCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------~~d   79 (338)
                      |++|||||++.||++++++|+++|++|++.+|+.+.              .+....++|+.+......+..      ..+
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~--------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   67 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG--------------EDLIYVEGDVTREEDVRRAVARAQEEAPLF   67 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS--------------SSSEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc--------------ccceEeeccccchhhhHHHHHhhhcccccc
Confidence            799999999999999999999999999999998654              345778899988765555432      445


Q ss_pred             EEEEecccCC---------CCCCCccchhhhhhhHHHHHHHHHHHhC---------CCccEEEEecCceeeeccCCCCCC
Q 040253           80 GVFHLATPMD---------FESKDPENEVIRPTINGMVSIMRACKNA---------KTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        80 ~vi~~a~~~~---------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                      .+++.++...         ....+..+..++.|+.+...+...+...         +...++|++||...+.        
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~--------  139 (241)
T d1uaya_          68 AVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE--------  139 (241)
T ss_dssp             EEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH--------
T ss_pred             chhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc--------
Confidence            5555554221         1111223456788888887776654321         1145899999976653        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCC
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEA  218 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~  218 (338)
                                    +......|+.+|...+.+.+.++.++   |+++..|.||.+..+.............    ..+..
T Consensus       140 --------------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~----~~~~~  201 (241)
T d1uaya_         140 --------------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGLPEKAKASL----AAQVP  201 (241)
T ss_dssp             --------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTSCHHHHHHH----HTTCC
T ss_pred             --------------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchhhhhHHHHH----HhcCC
Confidence                          11234589999999999999999875   8999999999886543222111111111    11111


Q ss_pred             CCCCCCCCccccHHHHHHHHHHhhcCCCCCC-ceEEe
Q 040253          219 HYPIIKQGQFVHLDDLCSAHIFLFEHPNAKG-RYICS  254 (338)
Q Consensus       219 ~~~~~~~~~~i~v~D~a~~~~~~l~~~~~~~-~~~~~  254 (338)
                      ..     .++...+|+|+++++++...-..| .+.+.
T Consensus       202 ~~-----~R~g~pedvA~~v~fL~s~~~iTG~~i~VD  233 (241)
T d1uaya_         202 FP-----PRLGRPEEYAALVLHILENPMLNGEVVRLD  233 (241)
T ss_dssp             SS-----CSCCCHHHHHHHHHHHHHCTTCCSCEEEES
T ss_pred             CC-----CCCcCHHHHHHHHHHHHhCCCCCCCEEEEC
Confidence            11     357789999999999987544445 34453

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=4e-16  Score=129.04  Aligned_cols=188  Identities=15%  Similarity=0.159  Sum_probs=128.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh-------hh--
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE-------PI--   75 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-------~~--   75 (338)
                      ..|||||||+|-||.+++++|+++|++|++++|+.....            .....+.+|..+.+....       .+  
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA------------DSNILVDGNKNWTEQEQSILEQTASSLQG   69 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc------------cccceeccccCchhHHHHHHHHHHHHhcC
Confidence            368999999999999999999999999999999765321            233455666655443222       12  


Q ss_pred             CCccEEEEecccCCC---CCC---CccchhhhhhhHHHHHHHHHHHhCC-CccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           76 RGCTGVFHLATPMDF---ESK---DPENEVIRPTINGMVSIMRACKNAK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~---~~~---~~~~~~~~~n~~~~~~l~~~~~~~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      .++|++||+||....   ...   +..+..+++|+.++..+.+++..+- ...++|++||...+.               
T Consensus        70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~---------------  134 (235)
T d1ooea_          70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG---------------  134 (235)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS---------------
T ss_pred             CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC---------------
Confidence            258999999985321   111   1233568899999888877765431 136899999976553               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                             +.+....|+.+|.+.+.+.+.++.++     +++++.+.||.+--+.        .....    ..      .
T Consensus       135 -------~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~--------~~~~~----~~------~  189 (235)
T d1ooea_         135 -------PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM--------NRKWM----PN------A  189 (235)
T ss_dssp             -------CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH--------HHHHS----TT------C
T ss_pred             -------CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcc--------hhhhC----cC------C
Confidence                   11134589999999999999998774     6788889998774321        11110    11      1


Q ss_pred             CCCccccHHHHHHHHHHhhcC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      ....++..+|+++.++..+..
T Consensus       190 ~~~~~~~~~~va~~~~~~l~~  210 (235)
T d1ooea_         190 DHSSWTPLSFISEHLLKWTTE  210 (235)
T ss_dssp             CGGGCBCHHHHHHHHHHHHHC
T ss_pred             ccccCCCHHHHHHHHHHHhcC
Confidence            113588899999998766544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.4e-16  Score=129.99  Aligned_cols=200  Identities=15%  Similarity=0.005  Sum_probs=137.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-------C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-------R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-------~   76 (338)
                      .+|++|||||++.||.+++++|+++|++|++++|+.++.+........ .....+..+.+|+.+.+......       .
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLE-LGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhh-hhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999988766555332110 11146788889998876665543       3


Q ss_pred             CccEEEEecccCCCC-----CCCccchhhhhhhHHHHHHHHHHHhC---CCccEEEEecCceeeeccCCCCCCcCCCCCC
Q 040253           77 GCTGVFHLATPMDFE-----SKDPENEVIRPTINGMVSIMRACKNA---KTVRRLVFTSSAGTLDVEEHRKPVYDETSWS  148 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~  148 (338)
                      .+|+++++|+.....     ..+.....+++|+.+...+.+++...   + ..++|++||.+.+.               
T Consensus        92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~-~G~ii~isS~~~~~---------------  155 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKV---------------  155 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTS---------------
T ss_pred             CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc-CCcceEeccchhcC---------------
Confidence            689999999854311     11223467889999888877765321   1 25899999876542               


Q ss_pred             chhhhhhccCCCchHHHHHHHHHHHHHHHHHHc-----CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          149 DLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN-----NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       149 ~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                             +.+....|+.||.+.+.+.+.++.++     +++++.+.||.|-.+.        .....   .+..      
T Consensus       156 -------~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~--------~~~~~---~~~~------  211 (269)
T d1xu9a_         156 -------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET--------AMKAV---SGIV------  211 (269)
T ss_dssp             -------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH--------HHHHS---CGGG------
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcH--------HHHhc---cCCc------
Confidence                   11234589999999999999988763     5889999998774321        11110   0110      


Q ss_pred             CCCccccHHHHHHHHHHhhcCC
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHP  245 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~  245 (338)
                       .......+++++.+...+...
T Consensus       212 -~~~~~~~e~~a~~i~~~~~~~  232 (269)
T d1xu9a_         212 -HMQAAPKEECALEIIKGGALR  232 (269)
T ss_dssp             -GGGCBCHHHHHHHHHHHHHTT
T ss_pred             -cccCCCHHHHHHHHHHHhhcC
Confidence             023556788888888776553

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.62  E-value=5e-15  Score=125.35  Aligned_cols=219  Identities=11%  Similarity=0.095  Sum_probs=136.6

Q ss_pred             CCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh------
Q 040253            4 IAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI------   75 (338)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~------   75 (338)
                      .+|++|||||+|  -||.+++++|+++|++|++.+|+.+..+..+.+.+..   ....++..|+++..+..+++      
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL---NSPYVYELDVSKEEHFKSLYNSVKKD   80 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhC---CceeEeeecccchhhHHHHHHHHHHH
Confidence            479999999987  7999999999999999999999876555555544322   45677899999987776655      


Q ss_pred             -CCccEEEEecccCCCC--CC----Cccchhhhh---hhHHHHHHHHHHHhCCCccE-EEEecCceeeeccCCCCCCcCC
Q 040253           76 -RGCTGVFHLATPMDFE--SK----DPENEVIRP---TINGMVSIMRACKNAKTVRR-LVFTSSAGTLDVEEHRKPVYDE  144 (338)
Q Consensus        76 -~~~d~vi~~a~~~~~~--~~----~~~~~~~~~---n~~~~~~l~~~~~~~~~~~~-~v~~Ss~~v~~~~~~~~~~~~e  144 (338)
                       ..+|++||+++.....  ..    .........   +......+...+....+... ++.+|+.....           
T Consensus        81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~-----------  149 (274)
T d2pd4a1          81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK-----------  149 (274)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS-----------
T ss_pred             cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc-----------
Confidence             3799999999864411  01    111111111   12222233333332221233 44444443332           


Q ss_pred             CCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCC
Q 040253          145 TSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYP  221 (338)
Q Consensus       145 ~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (338)
                                 .......|+.+|...+.+.+.++.++   |+++.++.||.+.-+............... ....  +. 
T Consensus       150 -----------~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~-~~~~--p~-  214 (274)
T d2pd4a1         150 -----------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWN-EINA--PL-  214 (274)
T ss_dssp             -----------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHH-HHHS--TT-
T ss_pred             -----------ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHH-hhhh--hc-
Confidence                       11234589999999999999888775   899999999988765432221111111110 0111  11 


Q ss_pred             CCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          222 IIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       222 ~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                          .++...+|+|.++.+++....  ..| .+.+.+
T Consensus       215 ----~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDG  247 (274)
T d2pd4a1         215 ----RKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDA  247 (274)
T ss_dssp             ----SSCCCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             ----cCCcCHHHHHHHHHHHhChhhCCCcCceEEECC
Confidence                468899999999999987533  244 445533

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=2.3e-14  Score=121.85  Aligned_cols=216  Identities=17%  Similarity=0.128  Sum_probs=133.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc-HHHHHHHhcCCCCCCcEEE-----------------EecccC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN-KKKVKHLLELPKASTHLTL-----------------WKADLA   66 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~Dl~   66 (338)
                      +..++||||++-||.+++++|++.|++|++.+|+... .+.+........ ......                 +.+|++
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~dv~   80 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGSAPVT   80 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCCCC----CCCBC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhc-CCceEEEEeecccccccccccccccccCC
Confidence            4578999999999999999999999999998876543 333322211100 023333                 445566


Q ss_pred             CCCCchhhh-------CCccEEEEecccCCCCCC-----Ccc--------------chhhhhhhHHHHHHHHHHHh----
Q 040253           67 EEGNFDEPI-------RGCTGVFHLATPMDFESK-----DPE--------------NEVIRPTINGMVSIMRACKN----  116 (338)
Q Consensus        67 d~~~~~~~~-------~~~d~vi~~a~~~~~~~~-----~~~--------------~~~~~~n~~~~~~l~~~~~~----  116 (338)
                      +.+++.+++       .++|++||+||.......     +..              ...+..|+.+...+.+++..    
T Consensus        81 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~  160 (284)
T d1e7wa_          81 LFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG  160 (284)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence            666666554       379999999986432110     111              12467788887777765432    


Q ss_pred             -----CCCccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEE
Q 040253          117 -----AKTVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISI  188 (338)
Q Consensus       117 -----~~~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~il  188 (338)
                           .+....+++++|.....                      +......|+.+|...+.+.+.++.++   |+++.++
T Consensus       161 ~~~~~~~~~~~ii~~~s~~~~~----------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I  218 (284)
T d1e7wa_         161 TPAKHRGTNYSIINMVDAMTNQ----------------------PLLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGV  218 (284)
T ss_dssp             SCGGGSCSCEEEEEECCTTTTS----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred             hHHHhcCCCCcccccccccccC----------------------CccceeeeccccccchhhhHHHHHHhCCcccccccc
Confidence                 12134677777764332                      11234589999999999999999875   8999999


Q ss_pred             cCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEe
Q 040253          189 IPSLVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICS  254 (338)
Q Consensus       189 Rp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~  254 (338)
                      -||.+--..   .+........   .......     .++...+|+|+++++++....  ..| .+.+.
T Consensus       219 ~PG~t~~~~---~~~~~~~~~~---~~~~pl~-----~R~~~peeiA~~v~fL~S~~s~~itG~~i~VD  276 (284)
T d1e7wa_         219 GPGLSVLVD---DMPPAVWEGH---RSKVPLY-----QRDSSAAEVSDVVIFLCSSKAKYITGTCVKVD  276 (284)
T ss_dssp             EESSBCCGG---GSCHHHHHHH---HTTCTTT-----TSCBCHHHHHHHHHHHHSGGGTTCCSCEEEES
T ss_pred             ccccccccc---cCCHHHHHHH---HhcCCCC-----CCCCCHHHHHHHHHHHhCchhcCccCCeEEEC
Confidence            998642211   1122111111   1111111     357789999999999986533  244 44553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.57  E-value=7.9e-15  Score=123.69  Aligned_cols=221  Identities=11%  Similarity=-0.009  Sum_probs=132.9

Q ss_pred             CCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh------
Q 040253            4 IAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI------   75 (338)
Q Consensus         4 ~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~------   75 (338)
                      .+|++|||||+|  .||.+++++|+++|++|++.+|+..+..  +.+.+..  ..+...+++|+.+.++..+++      
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~--~~~~~~~--~~~~~~~~~dv~~~~~~~~~~~~v~~~   80 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI--QRITDRL--PAKAPLLELDVQNEEHLASLAGRVTEA   80 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH--HHHHTTS--SSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH--HHHHHHc--CCceeeEeeecccccccccccchhhhc
Confidence            479999999765  5999999999999999999998765432  2222211  246778899999987655443      


Q ss_pred             ----CCccEEEEecccCCCCC--C-C-------ccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeeeccCCCCCC
Q 040253           76 ----RGCTGVFHLATPMDFES--K-D-------PENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLDVEEHRKPV  141 (338)
Q Consensus        76 ----~~~d~vi~~a~~~~~~~--~-~-------~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~~~~~~~~~  141 (338)
                          ..+|+++|+++......  . .       .....+..|+...................+.++|.....        
T Consensus        81 ~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~--------  152 (268)
T d2h7ma1          81 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSR--------  152 (268)
T ss_dssp             HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSS--------
T ss_pred             cccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccc--------
Confidence                25799999998543111  0 1       111233445555555555554433223344444433221        


Q ss_pred             cCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCC----CCCChh----HHHhh
Q 040253          142 YDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLT----SSMPPS----LITAL  210 (338)
Q Consensus       142 ~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~----~~~~~~----~~~~~  210 (338)
                                    ..+....|+.+|.+.+.+.+.++.++   |+++..|.||.+-.+...    ......    .....
T Consensus       153 --------------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~  218 (268)
T d2h7ma1         153 --------------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLE  218 (268)
T ss_dssp             --------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             --------------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHH
Confidence                          11124489999999999999998875   799999999988643210    000100    00111


Q ss_pred             hhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          211 SPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      .......+..     +.+...+|+|+++.+++....  ..| ++.+.+
T Consensus       219 ~~~~~~~pl~-----rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDG  261 (268)
T d2h7ma1         219 EGWDQRAPIG-----WNMKDATPVAKTVCALLSDWLPATTGDIIYADG  261 (268)
T ss_dssp             HHHHHHCTTC-----CCTTCCHHHHHHHHHHHSSSCTTCCSEEEEEST
T ss_pred             HHHHhcCCCC-----CCCCCHHHHHHHHHHHhCchhcCccCCEEEECc
Confidence            1111111111     457889999999999995432  244 345543

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.53  E-value=1.9e-13  Score=116.89  Aligned_cols=213  Identities=13%  Similarity=-0.007  Sum_probs=129.6

Q ss_pred             CCCcEEEEeCCch--hhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCC--------C-C---CcEEEEeccc---
Q 040253            3 SIAETVCVTGASG--FIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPK--------A-S---THLTLWKADL---   65 (338)
Q Consensus         3 ~~~~~ilVtGatG--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--------~-~---~~~~~~~~Dl---   65 (338)
                      ..+|++|||||+|  -||..++++|+++|.+|++..|++..............        . .   .++..+..++   
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNP   85 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSG
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcccc
Confidence            3579999999987  89999999999999999999886543222222111100        0 0   0222232222   


Q ss_pred             ---------------CCCCCchhh-------hCCccEEEEecccCCC-------CCCCccchhhhhhhHHHHHHHHHHHh
Q 040253           66 ---------------AEEGNFDEP-------IRGCTGVFHLATPMDF-------ESKDPENEVIRPTINGMVSIMRACKN  116 (338)
Q Consensus        66 ---------------~d~~~~~~~-------~~~~d~vi~~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~  116 (338)
                                     .+.....++       +.++|++||+||....       ...+.+...+++|+.+...+.+++..
T Consensus        86 ~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~  165 (297)
T d1d7oa_          86 EDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLP  165 (297)
T ss_dssp             GGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred             ccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHHH
Confidence                           223333333       2379999999985331       11223456788999999998888765


Q ss_pred             CC-CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH----cCccEEEEcCC
Q 040253          117 AK-TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE----NNIDFISIIPS  191 (338)
Q Consensus       117 ~~-~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~  191 (338)
                      .. ...+.+.+++.+...   .                  .......|..+|...+.+.+.++.+    +|++++.+.||
T Consensus       166 ~~~~~g~~~~~~~~~~~~---~------------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG  224 (297)
T d1d7oa_         166 IMNPGGASISLTYIASER---I------------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAG  224 (297)
T ss_dssp             GEEEEEEEEEEECGGGTS---C------------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             HhhcCCcceeeeehhhcc---c------------------ccccccceecccccccccccccchhccccceEEecccccc
Confidence            43 123455555544331   0                  1113347999998888776665543    48999999999


Q ss_pred             ceeCCCCCCCCChhHHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcC
Q 040253          192 LVVGPFLTSSMPPSLITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEH  244 (338)
Q Consensus       192 ~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~  244 (338)
                      .+..+.......  ........... .++     .++...+|+|+++++++..
T Consensus       225 ~i~T~~~~~~~~--~~~~~~~~~~~-~Pl-----gR~~~peevA~~v~fL~S~  269 (297)
T d1d7oa_         225 PLGSRAAKAIGF--IDTMIEYSYNN-API-----QKTLTADEVGNAAAFLVSP  269 (297)
T ss_dssp             CCBCCCSSCCSH--HHHHHHHHHHH-SSS-----CCCBCHHHHHHHHHHHTSG
T ss_pred             cccchhhhhccC--CHHHHHHHHhC-CCC-----CCCCCHHHHHHHHHHHhCc
Confidence            997765432211  11111111111 112     4588999999999999964

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.52  E-value=9.3e-13  Score=110.59  Aligned_cols=215  Identities=17%  Similarity=0.140  Sum_probs=129.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH-HHHH-HHhcCCCCCCcEEEEecccCCCCCchh----------
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK-KKVK-HLLELPKASTHLTLWKADLAEEGNFDE----------   73 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~----------   73 (338)
                      .+.|||||++-||..++++|+++|++|++.+|+.++. +.+. .+....  ......+..|..+.....+          
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR--AGSAVLCKGDLSLSSSLLDCCEDIIDCSF   79 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS--TTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhc--CCceEEEecccccchhHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999986643 2221 121111  1456777777766543322          


Q ss_pred             -hhCCccEEEEecccCCCCCCC----------------ccchhhhhhhHHHHHHHHHHHhCC--------CccEEEEecC
Q 040253           74 -PIRGCTGVFHLATPMDFESKD----------------PENEVIRPTINGMVSIMRACKNAK--------TVRRLVFTSS  128 (338)
Q Consensus        74 -~~~~~d~vi~~a~~~~~~~~~----------------~~~~~~~~n~~~~~~l~~~~~~~~--------~~~~~v~~Ss  128 (338)
                       .+.++|++||+||........                ....++..|+..............        ....++.+|+
T Consensus        80 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (266)
T d1mxha_          80 RAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD  159 (266)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECC
T ss_pred             HHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhh
Confidence             223699999999854321100                011233444444444333332211        1234555555


Q ss_pred             ceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChh
Q 040253          129 AGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPS  205 (338)
Q Consensus       129 ~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~  205 (338)
                      .....                      +.+....|+.+|...+.+.+.++.++   |+++..+.||.+.-+...   ...
T Consensus       160 ~~~~~----------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~---~~~  214 (266)
T d1mxha_         160 AMTDL----------------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAM---PQE  214 (266)
T ss_dssp             GGGGS----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSS---CHH
T ss_pred             ccccc----------------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccC---CHH
Confidence            43321                      11234589999999999999998874   899999999987654321   222


Q ss_pred             HHHhhhhcccCCCCCCCCCCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          206 LITALSPITRNEAHYPIIKQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                      .....   .... ++  +  +.+...+|+|+++++++....  ..| .+.+.+
T Consensus       215 ~~~~~---~~~~-pl--~--r~~~~peeva~~v~fL~s~~s~~itG~~i~vDG  259 (266)
T d1mxha_         215 TQEEY---RRKV-PL--G--QSEASAAQIADAIAFLVSKDAGYITGTTLKVDG  259 (266)
T ss_dssp             HHHHH---HTTC-TT--T--SCCBCHHHHHHHHHHHHSGGGTTCCSCEEEEST
T ss_pred             HHHHH---HhcC-CC--C--CCCCCHHHHHHHHHHHhCchhCCccCCeEEECc
Confidence            21111   1111 11  1  335789999999999997543  344 455543

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.43  E-value=8e-13  Score=114.38  Aligned_cols=169  Identities=11%  Similarity=0.044  Sum_probs=112.5

Q ss_pred             CcEEEEeC--CchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCC----------CCCcEEEEe----------
Q 040253            5 AETVCVTG--ASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPK----------ASTHLTLWK----------   62 (338)
Q Consensus         5 ~~~ilVtG--atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~~~~~----------   62 (338)
                      .|.+||||  ++.-||..+++.|++.|.+|.+..++...............          .........          
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence            57899999  55699999999999999999998886654333222211100          001112222          


Q ss_pred             ----------cccCCCCCchhhh-------CCccEEEEecccCCC-------CCCCccchhhhhhhHHHHHHHHHHHhCC
Q 040253           63 ----------ADLAEEGNFDEPI-------RGCTGVFHLATPMDF-------ESKDPENEVIRPTINGMVSIMRACKNAK  118 (338)
Q Consensus        63 ----------~Dl~d~~~~~~~~-------~~~d~vi~~a~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~~  118 (338)
                                .|+.+.+++.+++       .++|++||+||....       ...+.+...+++|+.+...+.+++...-
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m  161 (329)
T d1uh5a_          82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM  161 (329)
T ss_dssp             CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred             cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence                      2555666555543       379999999985432       1123345678889998888888776542


Q ss_pred             -CccEEEEecCceeeeccCCCCCCcCCCCCCchhhhhhccCCCchHHHHHHHHHHHHHHHHHH----cCccEEEEcCCce
Q 040253          119 -TVRRLVFTSSAGTLDVEEHRKPVYDETSWSDLDFVRSVKMTGWMYFVSKTLAEQAAWKFAEE----NNIDFISIIPSLV  193 (338)
Q Consensus       119 -~~~~~v~~Ss~~v~~~~~~~~~~~~e~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~~~~~~ilRp~~v  193 (338)
                       ...++|.+||.+...   .                  .+.+...|+.+|...+.+.+.++.+    +||++..|.||.+
T Consensus       162 ~~~GsIv~iss~~~~~---~------------------~p~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i  220 (329)
T d1uh5a_         162 KPQSSIISLTYHASQK---V------------------VPGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPL  220 (329)
T ss_dssp             EEEEEEEEEECGGGTS---C------------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCC
T ss_pred             ccccccccceeehhcc---c------------------ccccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcc
Confidence             245899998765432   0                  1112347999999999988888754    4899999999977


Q ss_pred             e
Q 040253          194 V  194 (338)
Q Consensus       194 ~  194 (338)
                      -
T Consensus       221 ~  221 (329)
T d1uh5a_         221 K  221 (329)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.41  E-value=3.8e-12  Score=106.20  Aligned_cols=222  Identities=16%  Similarity=0.148  Sum_probs=121.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh--------hC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP--------IR   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~--------~~   76 (338)
                      ||.|+||||+|.||.+++++|++.|++|++++|+....                   ..|+.+.+.....        ..
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~-------------------~~d~~~~~~~~~~~~~~~~~~~~   61 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV-------------------IADLSTAEGRKQAIADVLAKCSK   61 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE-------------------ECCTTSHHHHHHHHHHHHTTCTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH-------------------HHHhcCHHHHHHHHHHHHHHhCC
Confidence            68899999999999999999999999999999875421                   2355444322221        13


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHH----HhCCCccEEEEecCceeeeccCCCCCCcCC---CCCCc
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRAC----KNAKTVRRLVFTSSAGTLDVEEHRKPVYDE---TSWSD  149 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~~v~~Ss~~v~~~~~~~~~~~~e---~~~~~  149 (338)
                      .+|+++++|+....  .+........|..+...+.+..    .... ......+++................   .....
T Consensus        62 ~id~lv~~Ag~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  138 (257)
T d1fjha_          62 GMDGLVLCAGLGPQ--TKVLGNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSVASAHLAFDKNPLALALEAGEEAK  138 (257)
T ss_dssp             CCSEEEECCCCCTT--CSSHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHH
T ss_pred             CCcEEEEcCCCCCc--HHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCcceeeeeccccchhhhhhhhhhhccCCcEEE
Confidence            58999999985432  1233455667777766655543    3333 4455555554322100000000000   00000


Q ss_pred             hhhh-h--hccCCCchHHHHHHHHHHHHHHHHHHc---CccEEEEcCCceeCCCCCCCCChhHHHhhhhcccCCCCCCCC
Q 040253          150 LDFV-R--SVKMTGWMYFVSKTLAEQAAWKFAEEN---NIDFISIIPSLVVGPFLTSSMPPSLITALSPITRNEAHYPII  223 (338)
Q Consensus       150 ~~~~-~--~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (338)
                      .... .  ....+...|+.+|.+.+.+.+.++.++   |+++..+.||.+-.+.........-.  .........+.   
T Consensus       139 i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~--~~~~~~~~~Pl---  213 (257)
T d1fjha_         139 ARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRY--GESIAKFVPPM---  213 (257)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----------------------CCCST---
T ss_pred             EeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHH--HHHHHhcCCCC---
Confidence            0000 0  001122369999999999999988765   89999999999866542221110000  00000111111   


Q ss_pred             CCCccccHHHHHHHHHHhhcCCC--CCC-ceEEec
Q 040253          224 KQGQFVHLDDLCSAHIFLFEHPN--AKG-RYICSS  255 (338)
Q Consensus       224 ~~~~~i~v~D~a~~~~~~l~~~~--~~~-~~~~~~  255 (338)
                        .++...+|+++++.+++....  ..| .+.+.+
T Consensus       214 --gR~g~p~eva~~v~fL~S~~s~~itG~~i~vDG  246 (257)
T d1fjha_         214 --GRRAEPSEMASVIAFLMSPAASYVHGAQIVIDG  246 (257)
T ss_dssp             --TSCCCTHHHHHHHHHHTSGGGTTCCSCEEEEST
T ss_pred             --CCCcCHHHHHHHHHHHhCchhCCccCceEEeCC
Confidence              457889999999999986433  344 344533

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.29  E-value=6.6e-14  Score=111.55  Aligned_cols=81  Identities=17%  Similarity=0.187  Sum_probs=68.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+|+||||+|.||..+++.|++.|++|++++|+.++...........   .++....+|+.|.+++.+++.++|+|||
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            5799999999999999999999999999999999987765554332211   3456788999999999999999999999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +|+.
T Consensus        99 ~Ag~  102 (191)
T d1luaa1          99 AGAI  102 (191)
T ss_dssp             CCCT
T ss_pred             cCcc
Confidence            9985

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.67  E-value=1e-07  Score=70.84  Aligned_cols=115  Identities=16%  Similarity=0.147  Sum_probs=79.2

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            7 TVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      ||.|+||+|.+|++++-.|..+|  .++..++.++...... ++.... .......+    ....+..+.++++|+||.+
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~-Dl~~~~-~~~~~~~~----~~~~~~~~~~~~aDivVit   75 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA-DLSHIE-TRATVKGY----LGPEQLPDCLKGCDVVVIP   75 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH-HHTTSS-SSCEEEEE----ESGGGHHHHHTTCSEEEEC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH-HHhhhh-hhcCCCeE----EcCCChHHHhCCCCEEEEC
Confidence            89999999999999999998887  4788888765433322 221111 11111111    1234556778899999999


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||.......+. .++++.|+...+.+++.+.++++...++.+|.
T Consensus        76 ag~~~~~g~sR-~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          76 AGVPRKPGMTR-DDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             CSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCcCCCCCCCc-chHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            99655444443 47899999999999999999884456665554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.57  E-value=4.6e-08  Score=72.04  Aligned_cols=72  Identities=18%  Similarity=0.189  Sum_probs=60.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      |+|+|+|+ |.+|+++++.|.+.|++|++++++++....+...       .++.++.||.+|++.+.++ ++++|+++-+
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-------IDALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------CSSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-------hhhhhccCcccchhhhhhcChhhhhhhccc
Confidence            69999996 9999999999999999999999988766655432       2568899999999988887 4689999865


Q ss_pred             c
Q 040253           85 A   85 (338)
Q Consensus        85 a   85 (338)
                      .
T Consensus        73 t   73 (132)
T d1lssa_          73 T   73 (132)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.56  E-value=8.7e-07  Score=66.14  Aligned_cols=119  Identities=16%  Similarity=0.202  Sum_probs=79.7

Q ss_pred             CCC-CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHH-HHHh-cCCCCCCcEEEEecccCCCCCchhhh
Q 040253            1 MGS-IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKV-KHLL-ELPKASTHLTLWKADLAEEGNFDEPI   75 (338)
Q Consensus         1 m~~-~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~   75 (338)
                      |.. ..+||.|+|+ |.+|++++-.|+.+|  .++..++++++..... .++. ........+.....|.       +.+
T Consensus         1 m~~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l   72 (148)
T d1ldna1           1 MKNNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDC   72 (148)
T ss_dssp             CTTTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGT
T ss_pred             CCCCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHh
Confidence            444 3579999996 999999999999887  4788888866442211 1111 1111112344444443       457


Q ss_pred             CCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           76 RGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        76 ~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +++|+||.+|+......... .+.+..|+...+.+.+.+.++.+...++.+|.
T Consensus        73 ~daDvvvitag~~~~~~~~R-~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          73 RDADLVVICAGANQKPGETR-LDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             TTCSEEEECCSCCCCTTTCS-GGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             ccceeEEEecccccccCcch-hHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            78999999998655443333 37789999999999999988874556666553

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.55  E-value=3.9e-07  Score=67.79  Aligned_cols=115  Identities=12%  Similarity=0.129  Sum_probs=73.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ..|||.|+|+ |++|+.++..|+.+|  .++..++++....+.. .++..............+|.       +.++++|+
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-------~~~~~adi   75 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-------SDCKDADL   75 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-------GGGTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-------HHhccccE
Confidence            3679999995 999999999999987  6899999876433221 11211111112334455553       34578999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      ||.+|+.......+. .+.+..|+.....+.+.+.+.++...++.+|
T Consensus        76 vvitag~~~~~g~~r-~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          76 VVITAGAPQKPGESR-LDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             EEECCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEecccccCCCCCH-HHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            999998655333333 3678999999999999999887445555554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=4.7e-07  Score=67.18  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=77.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC---CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER---GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |||.|+|++|.+|++++-.|..+   ..++..++..+.......++...... .....+.    ..++ .+.+++.|+||
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~-~~~~~~~----~~~~-~~~~~~aDvvv   74 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTA-VKIKGFS----GEDA-TPALEGADVVL   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSS-CEEEEEC----SSCC-HHHHTTCSEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccc-cCCcEEE----cCCC-ccccCCCCEEE
Confidence            69999999999999999887543   36888888754332222222221111 1222221    1222 34678999999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      .+||.......+. .+++..|....+.+.+.+.++.+...++.+|.
T Consensus        75 itaG~~~k~g~~R-~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          75 ISAGVRRKPGMDR-SDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             ECCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             ECCCccCCCCcch-hhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            9999765444443 47899999999999999998874455666664

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.44  E-value=1.3e-06  Score=64.72  Aligned_cols=116  Identities=11%  Similarity=0.077  Sum_probs=75.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcH--HH-HHHHhc-CCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNK--KK-VKHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~--~~-~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      |||.|+||+|.+|++++..|+.++  .++..+++++...  +. ..++.. ......+.+.....    ....+.++++|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~----~~d~~~l~~aD   76 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDESD   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCC----cchHHHhccce
Confidence            689999999999999999999888  5888888875321  11 111111 11111222222111    11124677899


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +||-+||.......+. .+.+..|+...+.+.+.+.++. .+.++.+|
T Consensus        77 vVVitAG~~~~~g~sR-~dl~~~Na~iv~~i~~~i~~~~-~~~iivVt  122 (145)
T d1hyea1          77 VVIITSGVPRKEGMSR-MDLAKTNAKIVGKYAKKIAEIC-DTKIFVIT  122 (145)
T ss_dssp             EEEECCSCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHC-CCEEEECS
T ss_pred             EEEEecccccCCCCCh-hhhhhhhHHHHHHHHHHHhccC-CCeEEEEc
Confidence            9999998655433333 4788999999999999998887 45555443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.37  E-value=2.5e-06  Score=62.81  Aligned_cols=113  Identities=14%  Similarity=0.047  Sum_probs=75.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCc--HH-HHHHHhc-CCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDN--KK-KVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~--~~-~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      .||.|+||+|.+|++++-.|..++.  ++..++.+...  .. ...++.. .+. ..+.....+|.       +.++++|
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~-~~~~~i~~~~~-------~~~~~aD   72 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAY-DSNTRVRQGGY-------EDTAGSD   72 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTT-TCCCEEEECCG-------GGGTTCS
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccc-cCCceEeeCCH-------HHhhhcC
Confidence            3899999999999999999999873  67777753221  11 1112211 111 13344444443       2456899


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +|+-+||.......+. .+.++.|+...+.+.+.+.+.++...++.+|
T Consensus        73 iVvitaG~~~~~g~~R-~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          73 VVVITAGIPRQPGQTR-IDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             EEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             EEEEecccccccCCch-hhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence            9999998654433333 4789999999999999999987445566555

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.32  E-value=4.1e-06  Score=61.79  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=71.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHH-HHHHHhc-CCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKK-KVKHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +||.|+|+ |.+|+.++-.|+.++  .++..++++++... ...++.. .+. .+......+|       .+.++++|+|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~-~~~~~~~~~~-------~~~~~~adiv   72 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPF-MGQMSLYAGD-------YSDVKDCDVI   72 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCC-TTCEEEC--C-------GGGGTTCSEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCccc-CCCeeEeeCc-------HHHhCCCceE
Confidence            58999996 999999999999887  48999998765422 1222221 211 1233333332       2457789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +-+|+.......+. .+.+..|+.....+++.+.++++...++.+|
T Consensus        73 vitag~~~~~~~~r-~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          73 VVTAGANRKPGETR-LDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             EECCCC------CH-HHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             EEecccccCcCcch-hHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            99998655433333 4788999999999999999887445566555

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.27  E-value=1.5e-06  Score=65.24  Aligned_cols=122  Identities=13%  Similarity=0.077  Sum_probs=77.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHH-HHHhcCCCCCCcEEEEecccCCCCCchhhhCCc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKV-KHLLELPKASTHLTLWKADLAEEGNFDEPIRGC   78 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (338)
                      |....+||.|+|+ |.+|+.++..|...+ .++..++.++...... .++...... .+.   ...+....++.++++++
T Consensus         3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~-~~~---~~~~~~~~~~~~~~~~a   77 (154)
T d1pzga1           3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSV-VDT---NVSVRAEYSYEAALTGA   77 (154)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHH-TTC---CCCEEEECSHHHHHTTC
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccc-cCC---eeEEeccCchhhhhcCC
Confidence            4556789999996 999999998888777 4888888776543322 111100000 000   00111123345678899


Q ss_pred             cEEEEecccCCCCCC----CccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           79 TGVFHLATPMDFESK----DPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        79 d~vi~~a~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      |+|+-+++......+    ..-.+++..|+.....+++.+.+.++...++.+|
T Consensus        78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            999999986542221    1224678899999999999999888444555454

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.27  E-value=6.1e-07  Score=69.44  Aligned_cols=74  Identities=22%  Similarity=0.306  Sum_probs=56.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .|+|+|.|| |++|+++++.|.++|++|++++|+.++...+....      +.......+..+.......+...|.++.+
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC------TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc------cccccccccccchhhhHhhhhccceeEee
Confidence            589999985 99999999999999999999999988766654321      34455555665666666677788888865


Q ss_pred             c
Q 040253           85 A   85 (338)
Q Consensus        85 a   85 (338)
                      .
T Consensus        75 ~   75 (182)
T d1e5qa1          75 I   75 (182)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.26  E-value=1.4e-05  Score=59.81  Aligned_cols=116  Identities=14%  Similarity=0.065  Sum_probs=77.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHH-HHHHh-cCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKK-VKHLL-ELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      +.+||.|+|+ |.+|+.++-.|..+|.  ++..++++++.... ..++. .....+.......+|.       +.++++|
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-------~~~~~ad   90 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-------SVTANSK   90 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-------GGGTTCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-------hhccccc
Confidence            3579999995 9999999999999984  78888886544321 11121 1111111222222332       4567889


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +||.+||.......+. .+..+.|+...+.++..+.+.+...-++.+|.
T Consensus        91 iVVitAg~~~~~g~tR-~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          91 IVVVTAGVRQQEGESR-LNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             EEEECCSCCCCTTCCG-GGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEEecCCccccCcch-HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            9999999765444444 37789999999999999988874455666664

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=3.9e-06  Score=61.84  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=74.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH--HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK--VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |||.|+|+ |.+|++++-.|+.++  .++..+++++.....  ++.....+.. .+.....+|.       +.++++|+|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~-~~~~~~~~~~-------~~~~~adiv   71 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFT-RRANIYAGDY-------ADLKGSDVV   71 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEEECCG-------GGGTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccc-ccccccCCcH-------HHhcCCCEE
Confidence            68999996 999999999888876  588888876543222  1111111111 2333333332       457789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      |-+|+......... .+.+..|+.....+.+.+.+..+...++.+|
T Consensus        72 vitag~~~~~g~~r-~dl~~~N~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          72 IVAAGVPQKPGETR-LQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             EECCCCCCCSSCCH-HHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEecccccCCCcch-hhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence            99998655433333 3778889999999999999887445555544

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.25  E-value=1e-05  Score=59.54  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH-HHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK-VKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .||.|+|+ |.+|++++-.|..+|  .++..+++++..... ..++.......+.......     +++ +.++++|+||
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~-----~~~-~~~~daDvVV   74 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS-----DDP-EICRDADMVV   74 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE-----SCG-GGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC-----CCH-HHhhCCcEEE
Confidence            58999996 999999999999887  478888877644322 1112111101112222221     122 3567889999


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      -+||.......+.. +.+..|+...+.+...+.++++...++.+|
T Consensus        75 itaG~~~~~g~~R~-dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          75 ITAGPRQKPGQSRL-ELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             ECCCCCCCTTCCHH-HHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EecccccCCCCchh-hhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            99997654444443 788999999999999998887445555555

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.25  E-value=2.3e-06  Score=63.40  Aligned_cols=114  Identities=11%  Similarity=0.008  Sum_probs=75.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHHH-HHhcCC-CCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKVK-HLLELP-KASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~-~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |||.|+|| |.+|++++..|+..+  .++..+++++....... .+.... ....+.++...  .|    .+.++++|+|
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~----~~~~~dadvv   73 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--ND----YADTANSDIV   73 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SC----GGGGTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CC----HHHhcCCeEE
Confidence            68999995 999999999999887  58999998876543322 111110 00112222211  11    2456789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +-+||.......+. .+....|+.....+.+.+.++.+...++.+|
T Consensus        74 vitag~~~~~g~~r-~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1guza1          74 IITAGLPRKPGMTR-EDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (142)
T ss_dssp             EECCSCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             EEEEecCCCCCCch-HHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence            99998655333333 4778999999999999998877445555554

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=7.7e-07  Score=67.02  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCC----e-E-EEEEcCCCcHHHHHHHhc--CCCCCCcEEEEecccCCCCCch
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGY----A-V-RATVRDPDNKKKVKHLLE--LPKASTHLTLWKADLAEEGNFD   72 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~----~-V-~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~~~~~   72 (338)
                      |+ .++||.|+||+|++|++++-.|...+.    . + .-+..........+....  .....+....+..    .....
T Consensus         1 m~-~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~   75 (154)
T d1y7ta1           1 MK-APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEA----TDDPK   75 (154)
T ss_dssp             CC-CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE----ESCHH
T ss_pred             CC-CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccccccccccc----CCchh
Confidence            44 367999999999999999999987642    1 1 112222223333222110  0011122222222    23345


Q ss_pred             hhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCc-cEEEEecC
Q 040253           73 EPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTV-RRLVFTSS  128 (338)
Q Consensus        73 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~v~~Ss  128 (338)
                      +.++++|+||-++|.......+. .+++..|+...+.+.+.+.+..+. ..++.+|.
T Consensus        76 ~~~~~advViitaG~~~~pg~~r-~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN  131 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMER-RDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN  131 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             hhcccccEEEeecCcCCCCCCcH-HHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            77889999999999765443343 478899999999999999885412 34555553

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.16  E-value=1.9e-05  Score=58.05  Aligned_cols=112  Identities=12%  Similarity=0.025  Sum_probs=73.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH----HHHHhcCCCCCCcEEEEe-cccCCCCCchhhhCCc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK----VKHLLELPKASTHLTLWK-ADLAEEGNFDEPIRGC   78 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~~~   78 (338)
                      |||.|+|+ |.+|++++-.|+.+|  .++..++++++....    +.+......  ....... .|       .+.++++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~--~~~~i~~~~d-------~~~~~~a   70 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGID--KYPKIVGGAD-------YSLLKGS   70 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTT--CCCEEEEESC-------GGGGTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccC--CCCccccCCC-------HHHhccc
Confidence            69999995 999999999998887  478888877644222    111111111  1112221 22       2467789


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |+||-.|+.......+. .+....|+.....+.+.+.+.++...++.+|.
T Consensus        71 diVvitag~~~~~g~~r-~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          71 EIIVVTAGLARKPGMTR-LDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             SEEEECCCCCCCSSCCH-HHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cEEEEeccccCCCCCch-HHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            99999998655433333 47888999999999999998874455555553

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.16  E-value=1.1e-05  Score=59.61  Aligned_cols=114  Identities=13%  Similarity=0.108  Sum_probs=72.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHHH-HHHh-cCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKKV-KHLL-ELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~-~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      |||.|+| +|.+|+.++-.|+.+|  .++..+++++...... .++. ..............|.       +.++++|+|
T Consensus         2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-------~~l~~adiV   73 (146)
T d1hyha1           2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-------AALADADVV   73 (146)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-------GGGTTCSEE
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH-------HHhccccEE
Confidence            7999999 5999999999999887  4788888765542221 1111 1111112233334332       456789999


Q ss_pred             EEecccCCCCCCC---ccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESKD---PENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      |-+||........   .-.+....|+.....+.+.+.+..+...++.+|
T Consensus        74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            9999854311111   123567889999999999999887445566555

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.14  E-value=1e-06  Score=64.74  Aligned_cols=72  Identities=19%  Similarity=0.139  Sum_probs=57.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      |+++|+| .|.+|+++++.|.+.|++|++++.+++....+..        .....+.+|.++++.+.++ ++++|.||-+
T Consensus         1 k~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           1 KQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--------TCSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--------hCCcceeeecccchhhhccCCccccEEEEE
Confidence            5788887 5999999999999999999999988766544322        3457888999999988877 6789988765


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      .+
T Consensus        72 ~~   73 (134)
T d2hmva1          72 IG   73 (134)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=2.1e-05  Score=58.91  Aligned_cols=115  Identities=14%  Similarity=0.129  Sum_probs=75.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCCcHHH-HHHHhc-CCCCCCcEEEEecccCCCCCchhhhCCccE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPDNKKK-VKHLLE-LPKASTHLTLWKADLAEEGNFDEPIRGCTG   80 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~-~~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (338)
                      ..||.|+|+ |.+|++++-.|..+|  .++..++++++.... ..++.. .............|.       +.+.++|+
T Consensus        19 ~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-------~~~~~adi   90 (159)
T d2ldxa1          19 RCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-------NVSANSKL   90 (159)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-------GGGTTEEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-------hhhccccE
Confidence            458999995 999999999999887  478888877544321 122221 111111222222332       34578899


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ||-+||.......+.. +.++.|+.....+...+.+.++...++.+|.
T Consensus        91 vvitag~~~~~~~~R~-dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          91 VIITAGARMVSGQTRL-DLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             EEECCSCCCCTTTCSS-CTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             EEEecccccCCCCCHH-HHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            9999986554444443 6789999999999888887774455666554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.97  E-value=4.8e-05  Score=55.93  Aligned_cols=113  Identities=9%  Similarity=0.079  Sum_probs=68.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHH-HHHhcCCC-CCCcEEEE-ecccCCCCCchhhhCCccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKV-KHLLELPK-ASTHLTLW-KADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~-~~~~~~~~-~~~~~~~~-~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +||.|+|+ |.+|++++-.|..++ .++..++.+++..... .++..... ......+. ..|      + +.+.+.|+|
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d------~-~~~~~advv   73 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNN------Y-ADTANSDVI   73 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC------G-GGGTTCSEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCc------H-HHhcCCCEE
Confidence            68999995 999999999888877 4888888876643322 11111000 00111111 122      2 345678999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      |-+||.......+. .+.+..|+.....+++.+.+..+...++.+|
T Consensus        74 vitag~~~~~~~~r-~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          74 VVTSGAPRKPGMSR-EDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             EECCSCC----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             EEeeeccCCcCcch-hHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence            99998655333333 3678899999999999999887444555444

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.95  E-value=4e-06  Score=62.89  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=37.4

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      |++.+++|.|+||.|.+|+.+++.|.++||+|.+.+|+...
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~   45 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA   45 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence            56778999999999999999999999999999999987654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.93  E-value=1.2e-05  Score=61.36  Aligned_cols=117  Identities=9%  Similarity=0.081  Sum_probs=72.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC---C--CeEEEEEcCCC-cHHHHHHH----hcCCCCCCcEEEEecccCCCCCchhh
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER---G--YAVRATVRDPD-NKKKVKHL----LELPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~---g--~~V~~~~r~~~-~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      ..||.|+||+|.||++++-.|+..   |  ..+.+...+.. ....++.+    ....  .+....+..    .....+.
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a--~~~~~~~~~----~~~~~~~   97 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSL--YPLLREVSI----GIDPYEV   97 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTT--CTTEEEEEE----ESCHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccc--cccccCccc----cccchhh
Confidence            357999999999999999999874   3  23333333322 22222211    1111  112222111    2234577


Q ss_pred             hCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCC-ccEEEEecC
Q 040253           75 IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKT-VRRLVFTSS  128 (338)
Q Consensus        75 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~v~~Ss  128 (338)
                      ++++|+||-++|.......+. .+++..|+...+.+.+++.++.+ -.+++.+|.
T Consensus        98 ~~~aDvVvi~ag~~rkpg~tR-~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N  151 (175)
T d7mdha1          98 FEDVDWALLIGAKPRGPGMER-AALLDINGQIFADQGKALNAVASKNVKVLVVGN  151 (175)
T ss_dssp             TTTCSEEEECCCCCCCTTCCH-HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             ccCCceEEEeeccCCCCCCcH-HHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence            889999999998765444444 47899999999999999988642 245655553

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.93  E-value=3.5e-06  Score=66.07  Aligned_cols=42  Identities=21%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH   47 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~   47 (338)
                      |||.|+||+|.+|++|++.|++.|++|.+.+|++++...+..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~   42 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAA   42 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            689999999999999999999999999999998876655543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.92  E-value=7.6e-05  Score=55.23  Aligned_cols=116  Identities=12%  Similarity=0.056  Sum_probs=73.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHH-HhcC-CCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKH-LLEL-PKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .+||.|+|+ |.+|++++..|...+ .++..+++++........ +... .....+..+...      ...+.++++|+|
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~------~~~~~~~~advv   75 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS------NTYDDLAGADVV   75 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE------CCGGGGTTCSEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEec------ccccccCCCcEE
Confidence            468999995 999999998777776 478888887755333211 1100 000011122211      123566789999


Q ss_pred             EEecccCCCCCC----CccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESK----DPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +-+++.......    ....+.+..|+...+.+.+.+++..+...++.+|
T Consensus        76 vitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          76 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            999985442211    1234678999999999999999887445556555

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.89  E-value=1.8e-05  Score=61.03  Aligned_cols=81  Identities=15%  Similarity=0.070  Sum_probs=54.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .|||.|+| +|.+|..++..|.++|++|.+++|+++..+.+..........+..+..........++.+.++++|+||-+
T Consensus         1 sk~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            37999998 59999999999999999999999987666555443221111112222222222234567788899999976


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        80 v~   81 (184)
T d1bg6a2          80 VP   81 (184)
T ss_dssp             SC
T ss_pred             Ec
Confidence            53

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=2.9e-05  Score=57.25  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=27.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC----CeEEEEEcCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG----YAVRATVRDPD   40 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~   40 (338)
                      ||||.|.||||++|+.+++.|+++.    .+++.+.++..
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s   40 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL   40 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccc
Confidence            5799999999999999999888753    35666655433

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.85  E-value=0.00013  Score=54.45  Aligned_cols=118  Identities=11%  Similarity=0.017  Sum_probs=70.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-----C--eEEEEEcCCCcHHHHHHHhc--CCCCCCcEEEEecccCCCCCchhh
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-----Y--AVRATVRDPDNKKKVKHLLE--LPKASTHLTLWKADLAEEGNFDEP   74 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-----~--~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~~~~~~~   74 (338)
                      .++||.|+||+|.+|++++-.|+..+     .  .+..++.+ ......+.+..  .....+....+..    .....+.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~   76 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT-PMMGVLDGVLMELQDCALPLLKDVIA----TDKEEIA   76 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG-GGHHHHHHHHHHHHHTCCTTEEEEEE----ESCHHHH
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc-cchhhhhhhhhhhccccccccccccc----Ccccccc
Confidence            46899999999999999999998643     2  23333322 22222222210  0001122222221    1223467


Q ss_pred             hCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCcc-EEEEec
Q 040253           75 IRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVR-RLVFTS  127 (338)
Q Consensus        75 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~v~~S  127 (338)
                      ++++|+||-++|.......... +.+..|+...+.+.+.+.++.+.. .++.+|
T Consensus        77 ~~~~dvVVitag~~~~~g~sr~-dll~~N~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          77 FKDLDVAILVGSMPRRDGMERK-DLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             TTTCSEEEECCSCCCCTTCCTT-TTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cCCceEEEEecccCCCCCCchh-HHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence            7889999999986654433443 678999999999999887653133 455455

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.83  E-value=1.3e-05  Score=60.95  Aligned_cols=65  Identities=25%  Similarity=0.273  Sum_probs=45.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |||.|+| .|.+|+.+++.|.++|++|++++|+++..+.....        ++    .|  ......++++++|+||-+.
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~--------~~----~~--~~~~~~~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER--------QL----VD--EAGQDLSLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TS----CS--EEESCGGGGTTCSEEEECS
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh--------hc----cc--eeeeecccccccccccccC
Confidence            6899997 69999999999999999999999986655443321        11    01  1112235677899988543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.80  E-value=2.8e-05  Score=61.10  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=50.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEE------EEecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLT------LWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      |||.|.| .||+|..++..|+++|++|++++.+++..+.+..-. .+...+...      .....+.-..++.++++++|
T Consensus         1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~-~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d   78 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccC-CcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence            6899996 999999999999999999999998765444332110 000000000      00011112344566677899


Q ss_pred             EEEEecccC
Q 040253           80 GVFHLATPM   88 (338)
Q Consensus        80 ~vi~~a~~~   88 (338)
                      +++-|.+..
T Consensus        79 ~i~i~VpTP   87 (202)
T d1mv8a2          79 VSFICVGTP   87 (202)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEecCcc
Confidence            999888743

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.73  E-value=7.5e-05  Score=54.94  Aligned_cols=94  Identities=18%  Similarity=0.099  Sum_probs=53.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC---CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG---YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .|+|.|.||||++|+.+++.|.+++   .++..+..+....+             .+....-|+.-.+.-...+.++|++
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk-------------~i~~~~~~~~~~~~~~~~~~~~d~v   68 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ-------------RMGFAESSLRVGDVDSFDFSSVGLA   68 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC-------------EEEETTEEEECEEGGGCCGGGCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc-------------ceeeccccchhccchhhhhccceEE
Confidence            4799999999999999999997654   36665544333221             2221111111111111234578988


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      |.+++.          .       .+..+...+.+.+  .++|-.||..
T Consensus        69 f~a~p~----------~-------~s~~~~~~~~~~g--~~VID~Ss~f   98 (144)
T d2hjsa1          69 FFAAAA----------E-------VSRAHAERARAAG--CSVIDLSGAL   98 (144)
T ss_dssp             EECSCH----------H-------HHHHHHHHHHHTT--CEEEETTCTT
T ss_pred             EecCCc----------c-------hhhhhccccccCC--ceEEeechhh
Confidence            877642          1       1344555555666  4688777753

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=2.8e-05  Score=50.26  Aligned_cols=45  Identities=33%  Similarity=0.384  Sum_probs=39.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHL   48 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~   48 (338)
                      ..++|||+||+|-+|+..++.+...|++|+++.+++++.+.++.+
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~l   75 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL   75 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHC
Confidence            357899999999999999999999999999999998887766543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.67  E-value=1.1e-05  Score=62.57  Aligned_cols=81  Identities=16%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .|+||.|+| +|-.|++++..|.++|++|.+.+|+++..+.+......+...+++.. .-++.-..++.++++++|+||.
T Consensus         6 ~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~ad~iii   83 (189)
T d1n1ea2           6 YLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQL-ASNITFTSDVEKAYNGAEIILF   83 (189)
T ss_dssp             CEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTCSCEEE
T ss_pred             eeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccc-ccccccchhhhhccCCCCEEEE
Confidence            367899998 89999999999999999999999987766655544333222223221 1123233457788889999986


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        84 avP   86 (189)
T d1n1ea2          84 VIP   86 (189)
T ss_dssp             CSC
T ss_pred             cCc
Confidence            553

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.67  E-value=3.1e-05  Score=59.71  Aligned_cols=101  Identities=16%  Similarity=0.204  Sum_probs=67.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-----CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-----RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   78 (338)
                      ...+|||+||+|-+|...++.....|.+|+++++++++.+..+.+.        ...+ .|..+.+..+..+     .++
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~G--------a~~v-i~~~~~~~~~~~~~~~~~~Gv   99 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIG--------FDAA-FNYKTVNSLEEALKKASPDGY   99 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------CSEE-EETTSCSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhh--------hhhh-cccccccHHHHHHHHhhcCCC
Confidence            3679999999999999999999999999999999876655554432        1111 2444444444333     369


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      |+|+++.|.          +.       ....++.++..+   +++.++..+.|+
T Consensus       100 d~v~D~vG~----------~~-------~~~~~~~l~~~G---~~v~~G~~~~~~  134 (182)
T d1v3va2         100 DCYFDNVGG----------EF-------LNTVLSQMKDFG---KIAICGAISVYN  134 (182)
T ss_dssp             EEEEESSCH----------HH-------HHHHGGGEEEEE---EEEECCCGGGTT
T ss_pred             ceeEEecCc----------hh-------hhhhhhhccCCC---eEEeecceeecc
Confidence            999999873          11       123444444444   788777666554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.60  E-value=4.2e-05  Score=57.72  Aligned_cols=66  Identities=14%  Similarity=0.233  Sum_probs=50.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      |++|.++| .|.+|+.++++|+++||+|.+.+|++...+.+...               .........+++..+|+|+-+
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~---------------~~~~~~~~~e~~~~~diii~~   64 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA---------------GASAARSARDAVQGADVVISM   64 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---------------TCEECSSHHHHHTSCSEEEEC
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhh---------------hccccchhhhhccccCeeeec
Confidence            57899997 99999999999999999999999987665544331               111223456778889998877


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        65 v~   66 (162)
T d3cuma2          65 LP   66 (162)
T ss_dssp             CS
T ss_pred             cc
Confidence            64

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.57  E-value=0.00013  Score=53.55  Aligned_cols=95  Identities=15%  Similarity=0.014  Sum_probs=53.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC----CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhhCCccE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG----YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPIRGCTG   80 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~d~   80 (338)
                      |||.|.|||||+|+.+++.|++..    .++..+..+.....             ...+..-+.... ..-...++++|+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk-------------~~~~~~~~~~~~~~~~~~~~~~~Dv   67 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP-------------APNFGKDAGMLHDAFDIESLKQLDA   67 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB-------------CCCSSSCCCBCEETTCHHHHTTCSE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccccc-------------ccccCCcceeeecccchhhhccccE
Confidence            689999999999999999888643    34554443322211             000000011100 111234678999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      ||.+...       .  .        +..+...+.+.+....+|=.|+..
T Consensus        68 vF~alp~-------~--~--------s~~~~~~l~~~g~~~~VIDlSsdf  100 (147)
T d1mb4a1          68 VITCQGG-------S--Y--------TEKVYPALRQAGWKGYWIDAASTL  100 (147)
T ss_dssp             EEECSCH-------H--H--------HHHHHHHHHHTTCCSEEEESSSTT
T ss_pred             EEEecCc-------h--H--------HHHHhHHHHHcCCceEEEeCCccc
Confidence            9988752       1  1        355666666666223577777754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.56  E-value=5.1e-05  Score=56.92  Aligned_cols=71  Identities=21%  Similarity=0.202  Sum_probs=54.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|||+|+ |-+|..+++.|...|. ++++..|+.++...+....       +.+     ..+.+++.+.+.++|+||
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~-------~~~-----~~~~~~~~~~l~~~Divi   89 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL-------GGE-----AVRFDELVDHLARSDVVV   89 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH-------TCE-----ECCGGGHHHHHHTCSEEE
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh-------hcc-----cccchhHHHHhccCCEEE
Confidence            4689999996 9999999999999996 6999999876665554322       112     223456777888999999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      .+.+.
T Consensus        90 ~atss   94 (159)
T d1gpja2          90 SATAA   94 (159)
T ss_dssp             ECCSS
T ss_pred             EecCC
Confidence            99874

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=6.1e-05  Score=56.92  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK   42 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   42 (338)
                      |||+|+|+ |.+|+.++..|.+.|++|.+++|++...
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY   36 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence            69999986 9999999999999999999999987643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=4.9e-05  Score=58.07  Aligned_cols=96  Identities=18%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh---h--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP---I--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~--~~~   78 (338)
                      ...+|||+||+|-+|...++.+...|.+|+++++++++.+..+.+.        +..+ .|.++.+..+++   .  +++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~G--------a~~v-i~~~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNG--------AHEV-FNHREVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------CSEE-EETTSTTHHHHHHHHHCTTCE
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccC--------cccc-cccccccHHHHhhhhhccCCc
Confidence            4679999999999999999999999999999998765544444321        1111 255554433332   2  258


Q ss_pred             cEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           79 TGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |+|+.+.+.          ..       ....++.++..|   +++.++.
T Consensus        99 d~v~d~~g~----------~~-------~~~~~~~l~~~G---~iv~~G~  128 (174)
T d1yb5a2          99 DIIIEMLAN----------VN-------LSKDLSLLSHGG---RVIVVGS  128 (174)
T ss_dssp             EEEEESCHH----------HH-------HHHHHHHEEEEE---EEEECCC
T ss_pred             eEEeecccH----------HH-------HHHHHhccCCCC---EEEEEec
Confidence            999988762          11       233455555544   7887764

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=4.7e-05  Score=58.03  Aligned_cols=74  Identities=22%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|||+||+|-+|...++.+...|.+|+++++++++.+..+.+..        ..+ .|..+.........++|+||.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa--------~~~-i~~~~~~~~~~~~~g~D~v~d   97 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA--------EEA-ATYAEVPERAKAWGGLDLVLE   97 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC--------SEE-EEGGGHHHHHHHTTSEEEEEE
T ss_pred             CCCEEEEEeccccchhhhhhhhccccccccccccccccccccccccc--------cee-eehhhhhhhhhcccccccccc
Confidence            46799999999999999999999999999999998776665554321        111 132221111122357999999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.|
T Consensus        98 ~~G  100 (171)
T d1iz0a2          98 VRG  100 (171)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            876

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=4.5e-05  Score=58.02  Aligned_cols=74  Identities=16%  Similarity=0.177  Sum_probs=44.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      |+||.|.||||++|..|++.|.+.. .++..+..+......+.....      ... -..++ ...+.....+++|+|+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p------~~~-~~~~~-~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFP------STL-ENSIL-SEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCG------GGC-CCCBC-BCCCHHHHHHHCSEEEE
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCc------hhh-ccccc-cccCHhHhccccceEEE
Confidence            6899999999999999999998865 466666544444333333221      100 00111 11223344457899986


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        73 a~p   75 (176)
T d1vkna1          73 ALP   75 (176)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.50  E-value=0.00014  Score=55.43  Aligned_cols=96  Identities=17%  Similarity=0.248  Sum_probs=63.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhh--CCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPI--RGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~--~~~d~v   81 (338)
                      ..+|||+||+|-+|+..++.+...|.+|++.++++++.+..+.+...       ..+  |..+. +...+..  +++|+|
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~-------~vi--~~~~~~~~~~~~~~~~gvD~v  102 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK-------EVL--AREDVMAERIRPLDKQRWAAA  102 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS-------EEE--ECC---------CCSCCEEEE
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc-------eee--ecchhHHHHHHHhhccCcCEE
Confidence            46899999999999999999999999999999998888777665321       122  22111 1111222  379999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      |.+.+.      ..           ....++.++..|   |++.++..
T Consensus       103 id~vgg------~~-----------~~~~l~~l~~~G---riv~~G~~  130 (176)
T d1xa0a2         103 VDPVGG------RT-----------LATVLSRMRYGG---AVAVSGLT  130 (176)
T ss_dssp             EECSTT------TT-----------HHHHHHTEEEEE---EEEECSCC
T ss_pred             EEcCCc------hh-----------HHHHHHHhCCCc---eEEEeecc
Confidence            999873      11           133445555544   88877764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.48  E-value=0.00012  Score=55.24  Aligned_cols=75  Identities=24%  Similarity=0.345  Sum_probs=52.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~   83 (338)
                      ..+|||+||+|-+|...++.....|.+|+++++++++.+.++.+...     .+ +..-|. +.+.+... -+++|+|+.
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad-----~v-i~~~~~-~~~~~~~~~~~gvd~vid   96 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS-----EV-ISREDV-YDGTLKALSKQQWQGAVD   96 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS-----EE-EEHHHH-CSSCCCSSCCCCEEEEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc-----ce-Eeccch-hchhhhcccCCCceEEEe
Confidence            34799999999999999999888999999999999988887776431     11 111111 11222221 137999999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.+
T Consensus        97 ~vg   99 (167)
T d1tt7a2          97 PVG   99 (167)
T ss_dssp             SCC
T ss_pred             cCc
Confidence            887

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.47  E-value=0.0003  Score=52.18  Aligned_cols=65  Identities=20%  Similarity=0.228  Sum_probs=47.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |||-|+| .|.+|+.+++.|+++|++|++.+|+++.........        +     .+  .+...++++++|+||-+.
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~--------~-----~~--~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERART--------V-----GV--TETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHH--------H-----TC--EECCHHHHHTSSEEEECS
T ss_pred             CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhc--------c-----cc--cccHHHHHhhcCeEEEEe
Confidence            5899997 899999999999999999999888776654433211        1     11  123557788999999775


Q ss_pred             c
Q 040253           86 T   86 (338)
Q Consensus        86 ~   86 (338)
                      .
T Consensus        65 ~   65 (152)
T d1i36a2          65 T   65 (152)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=5.3e-05  Score=58.32  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=60.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++|+|+|+ |..|+.++..|.+.|. +++++.|+++..++...+...-...-.......++.+.+.+...+..+|+||
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiI   95 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT   95 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceec
Confidence            4689999984 7889999999999985 8999999988766654432110000123455667777777777888999999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      |+...
T Consensus        96 N~Tp~  100 (182)
T d1vi2a1          96 NGTKV  100 (182)
T ss_dssp             ECSST
T ss_pred             cccCC
Confidence            99853

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=6.9e-05  Score=57.43  Aligned_cols=75  Identities=13%  Similarity=0.066  Sum_probs=55.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh---h--CCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP---I--RGC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~--~~~   78 (338)
                      .+.+|+|+||+|-+|..+++.+...|.+|+++++++++.+..+.+...       ++  .|..+.+...++   -  .++
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~-------~v--i~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAW-------QV--INYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCS-------EE--EETTTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCe-------EE--EECCCCCHHHHHHHHhCCCCe
Confidence            357999999999999999999999999999999998877776655321       22  355554433332   2  258


Q ss_pred             cEEEEeccc
Q 040253           79 TGVFHLATP   87 (338)
Q Consensus        79 d~vi~~a~~   87 (338)
                      |+|+.+.+.
T Consensus        99 d~v~d~~g~  107 (179)
T d1qora2          99 RVVYDSVGR  107 (179)
T ss_dssp             EEEEECSCG
T ss_pred             EEEEeCccH
Confidence            999998873

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00011  Score=51.22  Aligned_cols=68  Identities=16%  Similarity=0.119  Sum_probs=54.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      ...||.|.| +|.+|+-++....+.|+++++++.++......          -.-+++.+|+.|.+.+.++..  ++|+|
T Consensus        10 ~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~----------va~~~i~~~~~d~~~l~~~~~~~~~Dvi   78 (111)
T d1kjqa2          10 AATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAMH----------VAHRSHVINMLDGDALRRVVELEKPHYI   78 (111)
T ss_dssp             TCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGGG----------GSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchhh----------cCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence            457899998 89999999999999999999999876543211          012678899999998888764  67988


Q ss_pred             E
Q 040253           82 F   82 (338)
Q Consensus        82 i   82 (338)
                      -
T Consensus        79 T   79 (111)
T d1kjqa2          79 V   79 (111)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.44  E-value=0.00049  Score=52.49  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATV   36 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~   36 (338)
                      |+||.|.|||||+|+.|++.|.+.. .++..+.
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~   33 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT   33 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence            6899999999999999999999874 5665543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.43  E-value=0.0003  Score=53.21  Aligned_cols=97  Identities=20%  Similarity=0.164  Sum_probs=61.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC--CCCchhhh-----C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE--EGNFDEPI-----R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~-----~   76 (338)
                      ...+|+|+| +|-+|...++.+...|.+|+++++++.+.+..+.+..      . ..+..|-.+  ...+.+.+     .
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga------~-~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA------D-VTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC------S-EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC------c-EEEeccccccccchhhhhhhccccc
Confidence            357899997 7889999999998999999999998777665554321      1 222222222  12222222     3


Q ss_pred             CccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           77 GCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      ++|+||.+++.       +  .       .....++.++..|   +++.++
T Consensus        98 g~D~vid~~g~-------~--~-------~~~~a~~~~~~~G---~iv~~G  129 (170)
T d1e3ja2          98 LPNVTIDCSGN-------E--K-------CITIGINITRTGG---TLMLVG  129 (170)
T ss_dssp             CCSEEEECSCC-------H--H-------HHHHHHHHSCTTC---EEEECS
T ss_pred             CCceeeecCCC-------h--H-------HHHHHHHHHhcCC---ceEEEe
Confidence            68999999873       1  1       1233455566555   788766

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=6e-05  Score=58.02  Aligned_cols=73  Identities=18%  Similarity=0.138  Sum_probs=51.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh---h--CCcc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP---I--RGCT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~---~--~~~d   79 (338)
                      +.+|||+||+|-+|...++.+...|.+|+++++++++.+.++..        ++..+ .|..+.+...++   .  +++|
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~--------Ga~~v-i~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL--------GVEYV-GDSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT--------CCSEE-EETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCEEEEECCCCCcccccchhhccccccceeeecccccccccccc--------ccccc-ccCCccCHHHHHHHHhCCCCEE
Confidence            57999999999999999999999999999999876655544432        22221 244444322332   2  3699


Q ss_pred             EEEEecc
Q 040253           80 GVFHLAT   86 (338)
Q Consensus        80 ~vi~~a~   86 (338)
                      +||.+.+
T Consensus        97 ~v~d~~g  103 (183)
T d1pqwa_          97 VVLNSLA  103 (183)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999887

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00022  Score=54.36  Aligned_cols=71  Identities=25%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~   83 (338)
                      .+|||+||+|-+|+..++.....|.+|++++|++++.+.++.+.        ...+ .|..+.+. .+.+.  ..|.+|+
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lG--------ad~v-i~~~~~~~-~~~l~~~~~~~vvD  102 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG--------ASRV-LPRDEFAE-SRPLEKQVWAGAID  102 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT--------EEEE-EEGGGSSS-CCSSCCCCEEEEEE
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhc--------cccc-cccccHHH-HHHHHhhcCCeeEE
Confidence            48999999999999999999999999999999988877776653        2322 23333332 23332  4688998


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.+
T Consensus       103 ~Vg  105 (177)
T d1o89a2         103 TVG  105 (177)
T ss_dssp             SSC
T ss_pred             Ecc
Confidence            876

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.41  E-value=6.4e-05  Score=56.59  Aligned_cols=65  Identities=18%  Similarity=0.293  Sum_probs=49.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |||-|+| .|.+|+.+++.|+++|++|++.+|+++..+.+...        +...       .....++++++|+||-+.
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~--------~~~~-------~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA--------GAET-------ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--------TCEE-------CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh--------hhhh-------cccHHHHHhCCCeEEEEc
Confidence            5899997 89999999999999999999999987766655431        2221       234566777899998776


Q ss_pred             c
Q 040253           86 T   86 (338)
Q Consensus        86 ~   86 (338)
                      .
T Consensus        65 ~   65 (161)
T d1vpda2          65 P   65 (161)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.35  E-value=0.0024  Score=45.57  Aligned_cols=88  Identities=13%  Similarity=0.086  Sum_probs=60.1

Q ss_pred             CCcEEEEeCCc---hhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            4 IAETVCVTGAS---GFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         4 ~~~~ilVtGat---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      ..++|.|.|||   |..|..+++.|.+.| ++|+.+..+....                    ..+.-..++.++-..+|
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i--------------------~G~~~y~sl~dlp~~vD   66 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV--------------------QGVKAYKSVKDIPDEID   66 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE--------------------TTEECBSSTTSCSSCCS
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc--------------------CCeEeecchhhcCCCCc
Confidence            46899999999   999999999998766 6888875543211                    12223344444445789


Q ss_pred             EEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           80 GVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        80 ~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      .++-+...          +       .+..+++.+.+.+ ++.++.+|+.
T Consensus        67 lvvi~vp~----------~-------~~~~~~~~~~~~g-~~~~vi~s~G   98 (129)
T d2csua1          67 LAIIVVPK----------R-------FVKDTLIQCGEKG-VKGVVIITAG   98 (129)
T ss_dssp             EEEECSCH----------H-------HHHHHHHHHHHHT-CCEEEECCCS
T ss_pred             eEEEecCh----------H-------HhHHHHHHHHHcC-CCEEEEeccc
Confidence            88866541          1       1466788888888 7888877763

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00024  Score=52.79  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=57.2

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH-HHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK-KVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      .|+|+| .|-+|..+++.|.+.|++|+++..+++... ..+....     .++.++.||.+|++.|.++ ++++|+||-+
T Consensus         5 HiII~G-~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           5 HFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             EEEEEC-CCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            477877 599999999999999999999998875432 2222222     4789999999999988765 4579999866


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        79 ~~   80 (153)
T d1id1a_          79 SD   80 (153)
T ss_dssp             SS
T ss_pred             cc
Confidence            53

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.00024  Score=53.75  Aligned_cols=74  Identities=14%  Similarity=0.027  Sum_probs=53.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC-CCCchhhhCCccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE-EGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~~~~d~vi   82 (338)
                      .+.+|+|+|+ |-+|...++.+...|.+|+++++++++.+..+.+...       +++  |..+ .+......++.|+++
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~-------~~i--~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGAD-------HYI--ATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS-------EEE--EGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhccCCc-------EEe--eccchHHHHHhhhcccceEE
Confidence            3679999986 8999999998888899999999998887776665321       222  2222 333334445799999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      .+.+.
T Consensus        97 ~~~~~  101 (168)
T d1piwa2          97 VCASS  101 (168)
T ss_dssp             ECCSC
T ss_pred             EEecC
Confidence            98764

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.31  E-value=0.00021  Score=54.82  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=29.4

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCC
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPD   40 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~   40 (338)
                      .+..||.|.|||||+|+.|++.|.+.. .++..+.-+..
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~   41 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRK   41 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTT
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEecccc
Confidence            346789999999999999999998875 46665554333

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.29  E-value=0.00019  Score=54.35  Aligned_cols=41  Identities=22%  Similarity=0.427  Sum_probs=33.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCCCcHHHHH
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDPDNKKKVK   46 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~   46 (338)
                      ||+|+|+| .|.+|..+++.|.+.|+  +|++++|+++..+...
T Consensus         1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~   43 (171)
T d2g5ca2           1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV   43 (171)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH
Confidence            57899997 79999999999999985  7888888766555443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.25  E-value=0.00059  Score=52.08  Aligned_cols=79  Identities=18%  Similarity=0.189  Sum_probs=50.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCC-CCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKA-STHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      |+|.|+| +|-.|+.++..|.++|++|.+.+|..+. +..+.+...... .-.......++.-.+++.++++++|+||.+
T Consensus         1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~a   78 (180)
T d1txga2           1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDT-EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLG   78 (180)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGH-HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEEC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccH-HHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcc
Confidence            6999998 7999999999999999999999885443 222333221110 001111111223345677888899999875


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        79 vp   80 (180)
T d1txga2          79 VS   80 (180)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.25  E-value=0.00013  Score=54.24  Aligned_cols=65  Identities=15%  Similarity=0.104  Sum_probs=48.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |||.++| +|-+|+++++.|.+.|+++++..|++++...+.....              +.-..+..++++++|+||-+.
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g--------------~~~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLA--------------LPYAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHT--------------CCBCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccc--------------eeeechhhhhhhccceeeeec
Confidence            6899997 9999999999999999999999998766655543221              111234567778899888654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00048  Score=51.96  Aligned_cols=74  Identities=15%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+.+|+|.|+ |-+|...++.+...|.+++++++++++.+..+.+...       .+  .|..+.+......+++|++|.
T Consensus        30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad-------~~--i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD-------EV--VNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-------EE--EETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHHhccCCc-------EE--EECchhhHHHHhcCCCceeee
Confidence            4679999986 8899999999988999999999887776655554321       12  244454444455568999999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +.+.
T Consensus       100 ~~g~  103 (168)
T d1uufa2         100 TVAA  103 (168)
T ss_dssp             CCSS
T ss_pred             eeec
Confidence            9873

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.06  E-value=0.0011  Score=49.00  Aligned_cols=25  Identities=40%  Similarity=0.497  Sum_probs=22.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY   30 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~   30 (338)
                      =||.|.|||||+|..|++.|.+..+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~f   26 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTL   26 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCC
Confidence            3799999999999999999987753

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.06  E-value=0.0016  Score=46.39  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=26.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRAT   35 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~   35 (338)
                      |||.|.|++|..|+.+++.+.+.|+++.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~   30 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK   30 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence            689999999999999999988889887654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0019  Score=48.62  Aligned_cols=74  Identities=16%  Similarity=0.078  Sum_probs=49.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-----CCc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-----RGC   78 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~~   78 (338)
                      +.+|+|+|+ |-+|...++.+...|. +|+++++++.+.+..+.+..       -..+..+-.+.....+.+     .++
T Consensus        27 gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga-------~~~~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          27 GHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA-------DLVLQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC-------SEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC-------cccccccccccccccccccccCCCCc
Confidence            578999985 9999999999999997 79999888766655444311       122222222333233322     268


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||.+.+
T Consensus        99 Dvvid~~G  106 (171)
T d1pl8a2          99 EVTIECTG  106 (171)
T ss_dssp             SEEEECSC
T ss_pred             eEEEeccC
Confidence            99999987

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00041  Score=54.86  Aligned_cols=73  Identities=14%  Similarity=0.068  Sum_probs=51.3

Q ss_pred             CCcEEEEeCC----------------chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC
Q 040253            4 IAETVCVTGA----------------SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGa----------------tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   67 (338)
                      .+++||||+|                ||..|.+|++.+..+|++|+.+.-.....        .|   +.+..+...  +
T Consensus         5 ~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~--------~p---~~~~~~~~~--t   71 (223)
T d1u7za_           5 KHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP--------TP---PFVKRVDVM--T   71 (223)
T ss_dssp             TTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC--------CC---TTEEEEECC--S
T ss_pred             CCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC--------cc---cccccceeh--h
Confidence            3689999887                79999999999999999999887533211        01   345555432  3


Q ss_pred             CCC----chhhhCCccEEEEecccCC
Q 040253           68 EGN----FDEPIRGCTGVFHLATPMD   89 (338)
Q Consensus        68 ~~~----~~~~~~~~d~vi~~a~~~~   89 (338)
                      .++    +.+.+.+.|++|++|+...
T Consensus        72 ~~~m~~~~~~~~~~~D~~i~aAAvsD   97 (223)
T d1u7za_          72 ALEMEAAVNASVQQQNIFIGCAAVAD   97 (223)
T ss_dssp             HHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             hHHHHHHHHhhhccceeEeeeechhh
Confidence            333    3334568999999998655

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.88  E-value=0.00047  Score=51.05  Aligned_cols=41  Identities=17%  Similarity=0.389  Sum_probs=34.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKH   47 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~   47 (338)
                      |||.++| +|-+|+++++.|++.| ++|++.+|+++..+.+..
T Consensus         1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~   42 (152)
T d1yqga2           1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEK   42 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHH
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhh
Confidence            6899997 6999999999998887 899999998776665543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.81  E-value=0.0071  Score=41.88  Aligned_cols=94  Identities=14%  Similarity=0.089  Sum_probs=62.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|+|+| +|-+|..-++.|++.|.+|++++......  ...+...    .+++++.....+     ..+.+++.|+.
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~~~--~~~~~~~----~~i~~~~~~~~~-----~dl~~~~lv~~   78 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIPQ--FTVWANE----GMLTLVEGPFDE-----TLLDSCWLAIA   78 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCHH--HHHHHTT----TSCEEEESSCCG-----GGGTTCSEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCChH--HHHHHhc----CCceeeccCCCH-----HHhCCCcEEee
Confidence            478999998 88999999999999999999988755432  2222221    456777655532     34567788875


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      +.+       ++.     .    ...+.+.|++.+   .+|++..
T Consensus        79 at~-------d~~-----~----n~~i~~~a~~~~---ilVNv~D  104 (113)
T d1pjqa1          79 ATD-------DDT-----V----NQRVSDAAESRR---IFCNVVD  104 (113)
T ss_dssp             CCS-------CHH-----H----HHHHHHHHHHTT---CEEEETT
T ss_pred             cCC-------CHH-----H----HHHHHHHHHHcC---CEEEeCC
Confidence            533       111     1    346777888877   4676553

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00083  Score=51.56  Aligned_cols=100  Identities=11%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEE-EEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh---hh-CCccE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVR-ATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE---PI-RGCTG   80 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~-~~~d~   80 (338)
                      .+|||+||+|-+|+..++.+...|.+++ +++++.++...+....       +.. ...|..+.+..+.   .. +++|+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~-------gad-~vi~~~~~~~~~~~~~~~~~GvDv  103 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL-------GFD-AAVNYKTGNVAEQLREACPGGVDV  103 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS-------CCS-EEEETTSSCHHHHHHHHCTTCEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc-------cce-EEeeccchhHHHHHHHHhccCceE
Confidence            6799999999999999999988997544 4455444433332211       111 1224444332222   11 27999


Q ss_pred             EEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           81 VFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        81 vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      |+.+.|.          +.       ....++.++..   .+++.+++.+.|.
T Consensus       104 v~D~vGg----------~~-------~~~~~~~l~~~---G~iv~~G~~s~~~  136 (187)
T d1vj1a2         104 YFDNVGG----------DI-------SNTVISQMNEN---SHIILCGQISQYN  136 (187)
T ss_dssp             EEESSCH----------HH-------HHHHHTTEEEE---EEEEEC-------
T ss_pred             EEecCCc----------hh-------HHHHhhhcccc---ccEEEeccccccc
Confidence            9999872          11       12334444433   4888888766653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.0013  Score=49.55  Aligned_cols=72  Identities=15%  Similarity=0.148  Sum_probs=50.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+|+|.| +|-.+++++..|.+.|.+|+++.|+.++...+.......   ..++.+..+  +     .....+|+||+
T Consensus        17 ~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~---~~~~~~~~~--~-----~~~~~~dliIN   85 (170)
T d1nyta1          17 PGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT---GSIQALSMD--E-----LEGHEFDLIIN   85 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG---SSEEECCSG--G-----GTTCCCSEEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhc---ccccccccc--c-----ccccccceeec
Confidence            468999998 577899999999999999999999887766655433211   123332222  1     11246899999


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus        86 ~Tp   88 (170)
T d1nyta1          86 ATS   88 (170)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            975

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.73  E-value=0.00092  Score=50.75  Aligned_cols=74  Identities=14%  Similarity=0.163  Sum_probs=51.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +.+|-++| .|.+|+.|++.|+++|++|++.+|++++.+.+.......   ....    .....+.+.+.+..+|.++-+
T Consensus         2 ~~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---~~~~----~a~~~~~~~~~~~~~~~ii~~   73 (176)
T d2pgda2           2 QADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG---TKVL----GAHSLEEMVSKLKKPRRIILL   73 (176)
T ss_dssp             CBSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT---SSCE----ECSSHHHHHHHBCSSCEEEEC
T ss_pred             CCcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccc---cccc----chhhhhhhhhhhcccceEEEe
Confidence            46899998 899999999999999999999999988776654321110   0000    122344455666788888876


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus        74 ~~   75 (176)
T d2pgda2          74 VK   75 (176)
T ss_dssp             SC
T ss_pred             cC
Confidence            54

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.73  E-value=0.0022  Score=48.27  Aligned_cols=73  Identities=14%  Similarity=0.157  Sum_probs=52.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|+|.| +|-.|+.++..|.+.+.+|+++.|+.++...+.......   .++..+..|-.       .+..+|+||+
T Consensus        17 ~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~~~~~-------~~~~~diiIN   85 (171)
T d1p77a1          17 PNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY---GNIQAVSMDSI-------PLQTYDLVIN   85 (171)
T ss_dssp             TTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG---SCEEEEEGGGC-------CCSCCSEEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc---cccchhhhccc-------cccccceeee
Confidence            468999998 577799999999988889999999987777665543321   23444444321       2457899999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus        86 ~tp~   89 (171)
T d1p77a1          86 ATSA   89 (171)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9753

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.71  E-value=0.0035  Score=47.57  Aligned_cols=62  Identities=24%  Similarity=0.260  Sum_probs=49.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|.|.| .|-||+.+++.|...|.+|.+.+|.+...                     +..-.+++.+++..+|+|+.
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~---------------------~~~~~~~l~ell~~sDiv~~   98 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEG---------------------PWRFTNSLEEALREARAAVC   98 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCS---------------------SSCCBSCSHHHHTTCSEEEE
T ss_pred             cCceEEEec-cccccccceeeeecccccccccccccccc---------------------ceeeeechhhhhhccchhhc
Confidence            368999998 89999999999999999999998865421                     11223467889999999987


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus        99 ~~pl  102 (181)
T d1qp8a1          99 ALPL  102 (181)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            6653

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.68  E-value=0.00092  Score=50.83  Aligned_cols=42  Identities=24%  Similarity=0.383  Sum_probs=37.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHL   48 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~   48 (338)
                      |||-|+| .|.+|..++++|+++||+|.+.+|++++...+...
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~   43 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA   43 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred             CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence            6799997 99999999999999999999999988877666544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.0012  Score=50.43  Aligned_cols=73  Identities=18%  Similarity=0.201  Sum_probs=49.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC--Cc----hhhh--
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG--NF----DEPI--   75 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~--~~----~~~~--   75 (338)
                      +.+|+|+|+ |-+|...++.+...|. +|+++++++++.+..+.+..      . ..+  |..+.+  +.    .+..  
T Consensus        29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa------~-~vi--~~~~~~~~~~~~~i~~~~~~   98 (182)
T d1vj0a2          29 GKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA------D-LTL--NRRETSVEERRKAIMDITHG   98 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC------S-EEE--ETTTSCHHHHHHHHHHHTTT
T ss_pred             CCEEEEECC-Cccchhheecccccccccccccccccccccccccccc------e-EEE--eccccchHHHHHHHHHhhCC
Confidence            579999986 8899999999999996 79999998777665554321      1 222  333322  12    2222  


Q ss_pred             CCccEEEEeccc
Q 040253           76 RGCTGVFHLATP   87 (338)
Q Consensus        76 ~~~d~vi~~a~~   87 (338)
                      .++|+||.+.|.
T Consensus        99 ~g~Dvvid~vG~  110 (182)
T d1vj0a2          99 RGADFILEATGD  110 (182)
T ss_dssp             SCEEEEEECSSC
T ss_pred             CCceEEeecCCc
Confidence            268999999873

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.66  E-value=0.0012  Score=49.64  Aligned_cols=75  Identities=15%  Similarity=0.146  Sum_probs=51.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh-----CC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI-----RG   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-----~~   77 (338)
                      ...+|+|+|++|-+|...++.+...| .+|+++++++++.+..+.+..      . ..+  |..+.+...+..     .+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga------~-~~i--~~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA------D-YVI--NASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC------S-EEE--ETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC------c-eee--ccCCcCHHHHHHHHhhccc
Confidence            35789999999999999999998888 588888888766555554321      1 222  333333333332     25


Q ss_pred             ccEEEEeccc
Q 040253           78 CTGVFHLATP   87 (338)
Q Consensus        78 ~d~vi~~a~~   87 (338)
                      +|+||.+++.
T Consensus        98 ~d~vid~~g~  107 (170)
T d1jvba2          98 VDAVIDLNNS  107 (170)
T ss_dssp             EEEEEESCCC
T ss_pred             chhhhccccc
Confidence            8999999873

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.57  E-value=0.0013  Score=47.02  Aligned_cols=69  Identities=20%  Similarity=0.235  Sum_probs=53.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhh-hCCccEEEEe
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEP-IRGCTGVFHL   84 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vi~~   84 (338)
                      |.|+|+| -|-+|..+++.|  ++++|.++..++........        .++.++.||.++++.|.++ +.+++.++-+
T Consensus         1 kHivI~G-~g~~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~   69 (129)
T d2fy8a1           1 RHVVICG-WSESTLECLREL--RGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVN   69 (129)
T ss_dssp             CCEEEES-CCHHHHHHHHTS--CGGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTTCTTCSEEEEC
T ss_pred             CEEEEEC-CCHHHHHHHHHH--cCCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhhhhcCcEEEEe
Confidence            3477887 688999999998  46778888888776655543        5789999999999888775 4578988865


Q ss_pred             c
Q 040253           85 A   85 (338)
Q Consensus        85 a   85 (338)
                      .
T Consensus        70 ~   70 (129)
T d2fy8a1          70 L   70 (129)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0012  Score=50.92  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=34.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK   43 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~   43 (338)
                      +.++|.|+|| |.+|+.++..++..|++|++++++++..+
T Consensus         3 ~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           3 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             eeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence            4589999995 99999999999999999999999876543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.54  E-value=0.0016  Score=52.19  Aligned_cols=38  Identities=37%  Similarity=0.473  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      |+.+.++|+|+| +|..|...+..|.++|++|.++.|+.
T Consensus         2 ~~~~~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           2 MMHSQKRVVVLG-SGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            555678999998 89999999999999999999999864

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.49  E-value=0.0046  Score=46.63  Aligned_cols=74  Identities=20%  Similarity=0.180  Sum_probs=49.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhh-----C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPI-----R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~-----~   76 (338)
                      .+.+|+|.|+.| +|...+..+...| .+|+++++++++.+....+.        .... .|..+. +.+.+..     .
T Consensus        28 ~GdtVlV~GaGG-~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G--------a~~~-i~~~~~~~~~~~~~~~~~~~   97 (176)
T d2jhfa2          28 QGSTCAVFGLGG-VGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG--------ATEC-VNPQDYKKPIQEVLTEMSNG   97 (176)
T ss_dssp             TTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT--------CSEE-ECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCC-cHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC--------CeeE-EecCCchhHHHHHHHHHhcC
Confidence            357899999855 8999999998887 58888888887766655432        1211 122232 3333322     2


Q ss_pred             CccEEEEeccc
Q 040253           77 GCTGVFHLATP   87 (338)
Q Consensus        77 ~~d~vi~~a~~   87 (338)
                      ++|++|.+.+.
T Consensus        98 G~D~vid~~G~  108 (176)
T d2jhfa2          98 GVDFSFEVIGR  108 (176)
T ss_dssp             CBSEEEECSCC
T ss_pred             CCCEEEecCCc
Confidence            79999999873

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.0012  Score=49.11  Aligned_cols=95  Identities=20%  Similarity=0.274  Sum_probs=54.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEE-cCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER-GYAVRATV-RDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      +.+||.|.|++|.+|+.+++.+.+. +.++.+.. |..... ....+....    +.  ...++.-..++...++.+|+|
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~-~g~d~~~~~----~~--~~~~~~~~~~~~~~~~~~DVi   75 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL-LGSDAGELA----GA--GKTGVTVQSSLDAVKDDFDVF   75 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTT-CSCCTTCSS----SS--SCCSCCEESCSTTTTTSCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchh-ccchhhhhh----cc--ccCCceeeccHHHHhcccceE
Confidence            4689999999999999999999876 55655543 322110 000000000    00  001111123445566789999


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEE
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLV  124 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v  124 (338)
                      |.+.-+                 ..+..++++|.+.+ ++ +|
T Consensus        76 IDFs~p-----------------~~~~~~~~~a~~~~-~~-~V   99 (162)
T d1diha1          76 IDFTRP-----------------EGTLNHLAFCRQHG-KG-MV   99 (162)
T ss_dssp             EECSCH-----------------HHHHHHHHHHHHTT-CE-EE
T ss_pred             EEeccH-----------------HHHHHHHHHHHhcc-ce-eE
Confidence            987542                 12466778888888 43 44

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.43  E-value=0.001  Score=49.38  Aligned_cols=103  Identities=10%  Similarity=0.132  Sum_probs=72.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +-+|+|+| .|-.|..-++.....|.+|.+++++.+..+.++....     .+++..   ..+.+.+.+.++++|+||.+
T Consensus        32 pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~---~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          32 PGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELL---YSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEE---ECCHHHHHHHHHTCSEEEEC
T ss_pred             CcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceee---hhhhhhHHHhhccCcEEEEe
Confidence            56899998 8999999999999999999999999887777766543     233333   33456678888899999998


Q ss_pred             cccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCc
Q 040253           85 ATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSA  129 (338)
Q Consensus        85 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~  129 (338)
                      +-......   + .++      ++..++.++...   -+|=++..
T Consensus       103 alipG~~a---P-~lI------t~~mv~~Mk~GS---VIVDvaid  134 (168)
T d1pjca1         103 VLVPGRRA---P-ILV------PASLVEQMRTGS---VIVDVAVD  134 (168)
T ss_dssp             CCCTTSSC---C-CCB------CHHHHTTSCTTC---EEEETTCT
T ss_pred             eecCCccc---C-eee------cHHHHhhcCCCc---EEEEeecC
Confidence            86544221   1 111      345555555544   46666653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.0025  Score=45.02  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=32.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .+++++|.| +|+||..++..|.+.|.+|+++.|++.
T Consensus        22 ~p~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          22 IPKRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEEC-CCchHHHHHHHHHhhCcceeEEEeccc
Confidence            468999998 899999999999999999999988653

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.41  E-value=0.026  Score=39.04  Aligned_cols=82  Identities=18%  Similarity=0.295  Sum_probs=56.6

Q ss_pred             cEEEEeCCc---hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGAS---GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      |+|.|.|+|   |..|..+++.|++.||+|+.+..+...                   + ..+.-..++.++-..+|.++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~-------------------i-~G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE-------------------I-EGLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-------------------E-TTEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc-------------------c-cCccccccchhccccceEEE
Confidence            689999988   889999999999999998877433211                   1 13333445555556789887


Q ss_pred             EecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEE
Q 040253           83 HLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF  125 (338)
Q Consensus        83 ~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~  125 (338)
                      -+...          +       .+..+++.+.+.+ ++.+++
T Consensus        62 i~vp~----------~-------~~~~~l~~~~~~g-~k~v~~   86 (116)
T d1y81a1          62 FVVPP----------K-------VGLQVAKEAVEAG-FKKLWF   86 (116)
T ss_dssp             ECSCH----------H-------HHHHHHHHHHHTT-CCEEEE
T ss_pred             EEeCH----------H-------HHHHHHHHHHhcC-CceEEe
Confidence            65431          1       1466777888888 776654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.39  E-value=0.003  Score=48.65  Aligned_cols=63  Identities=14%  Similarity=0.062  Sum_probs=47.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +++|.|.| .|.||+.+++.|...|.+|.+.++........                  +......+.++++.+|+|+.+
T Consensus        43 gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~------------------~~~~~~~l~~~l~~sDii~~~  103 (197)
T d1j4aa1          43 DQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRNPELEK------------------KGYYVDSLDDLYKQADVISLH  103 (197)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH------------------TTCBCSCHHHHHHHCSEEEEC
T ss_pred             CCeEEEec-ccccchhHHHhHhhhcccccccCccccccccc------------------ceeeecccccccccccccccc
Confidence            68999998 99999999999999999999998765432211                  112345677888889988877


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus       104 ~p  105 (197)
T d1j4aa1         104 VP  105 (197)
T ss_dssp             SC
T ss_pred             CC
Confidence            65

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.38  E-value=0.0032  Score=44.01  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .+++|+|.| +|++|..++..|.+.|.+|+++.|.+.
T Consensus        21 ~p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence            468999998 899999999999999999999998654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.35  E-value=0.0034  Score=44.05  Aligned_cols=37  Identities=22%  Similarity=0.163  Sum_probs=32.8

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      ..+++++|+| +|+||-.++..|.+.|.+|+++.|+..
T Consensus        20 ~~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          20 NVPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             SCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence            3468999998 899999999999999999999998653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.35  E-value=0.0063  Score=45.66  Aligned_cols=102  Identities=18%  Similarity=0.084  Sum_probs=66.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC-----------------
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE-----------------   67 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-----------------   67 (338)
                      +-+|+|+| .|-.|.+-++.....|.+|.+++.+....+.++.+..        .++..+..+                 
T Consensus        29 pa~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~--------~~i~~~~~~~~~~~~~~gyA~~~s~~   99 (183)
T d1l7da1          29 PARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG--------KFITVDDEAMKTAETAGGYAKEMGEE   99 (183)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC--------EECCC---------------------
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc--------ceEEEeccccccccccccchhhcCHH
Confidence            35899998 8999999999999999999999999999888877543        233222111                 


Q ss_pred             -----CCCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           68 -----EGNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        68 -----~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                           .+.+.+.+.++|+||-.+-.....  .|  .++      ++..++.++...   -+|=++.
T Consensus       100 ~~~~~~~~l~~~l~~aDlVI~talipG~~--aP--~li------t~~mv~~Mk~GS---VIVDvai  152 (183)
T d1l7da1         100 FRKKQAEAVLKELVKTDIAITTALIPGKP--AP--VLI------TEEMVTKMKPGS---VIIDLAV  152 (183)
T ss_dssp             --CCHHHHHHHHHTTCSEEEECCCCTTSC--CC--CCS------CHHHHTTSCTTC---EEEETTG
T ss_pred             HHHHHHHHHHHHHHhhhhheeeeecCCcc--cc--eee------hHHHHHhcCCCc---EEEEEee
Confidence                 122444567899999888544322  11  111      344555555544   4666664

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.33  E-value=0.024  Score=40.64  Aligned_cols=85  Identities=14%  Similarity=0.073  Sum_probs=58.1

Q ss_pred             CcEEEEeCCc---hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGAS---GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .++|.|.|+|   +..|..+++.|.+.||+|+.+..+...                   + ....-..++.++-..+|.|
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~-------------------i-~G~~~~~sl~dlp~~iD~v   78 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE-------------------V-LGRKCYPSVLDIPDKIEVV   78 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-------------------E-TTEECBSSGGGCSSCCSEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc-------------------c-CCCcccccccccCccceEE
Confidence            5789999998   899999999999999998877543221                   1 1222244455555578988


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEec
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTS  127 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~S  127 (338)
                      +-+...                 .....+++.+.+.+ ++.+++.+
T Consensus        79 ~i~vp~-----------------~~~~~~~~e~~~~g-~k~v~~~~  106 (139)
T d2d59a1          79 DLFVKP-----------------KLTMEYVEQAIKKG-AKVVWFQY  106 (139)
T ss_dssp             EECSCH-----------------HHHHHHHHHHHHHT-CSEEEECT
T ss_pred             EEEeCH-----------------HHHHHHHHHHHHhC-CCEEEEec
Confidence            766542                 12466778888888 77666543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.018  Score=43.74  Aligned_cols=95  Identities=13%  Similarity=0.029  Sum_probs=61.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|.|.| .|.||+.+++.|...|.+|.+.++......            .       .......+.++++.+|+|+.
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~------------~-------~~~~~~~l~ell~~sDii~i  102 (188)
T d1sc6a1          43 RGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPL------------G-------NATQVQHLSDLLNMSDVVSL  102 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCC------------T-------TCEECSCHHHHHHHCSEEEE
T ss_pred             cceEEEEee-cccchhhhhhhcccccceEeeccccccchh------------h-------hhhhhhhHHHHHhhccceee
Confidence            357899996 999999999999999999999987543211            0       11122467788889999887


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceee
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTL  132 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~  132 (338)
                      +....... ..    ++      ....++.++.   -..||.+|=..+.
T Consensus       103 ~~plt~~T-~~----li------~~~~l~~mk~---~a~lIN~aRG~lv  137 (188)
T d1sc6a1         103 HVPENPST-KN----MM------GAKEISLMKP---GSLLINASRGTVV  137 (188)
T ss_dssp             CCCSSTTT-TT----CB------CHHHHHHSCT---TEEEEECSCSSSB
T ss_pred             cccCCcch-hh----hc------cHHHHhhCCC---CCEEEEcCcHHhh
Confidence            76543211 11    11      1344555543   2467777765444

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.0037  Score=46.76  Aligned_cols=44  Identities=18%  Similarity=0.298  Sum_probs=36.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHL   48 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~   48 (338)
                      ..++|+|+| +|..|++++..|.+.|. +|.++.|+.++...+...
T Consensus        16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~   60 (167)
T d1npya1          16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAAL   60 (167)
T ss_dssp             TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHh
Confidence            357899998 58999999999999995 899999988776666543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.035  Score=36.88  Aligned_cols=71  Identities=18%  Similarity=0.194  Sum_probs=46.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|.++|-.|--=+.|++.|.++|++|.+.++......  +.+..     .++.+..+.-  +    +.+.++|.||.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~--~~L~~-----~Gi~v~~g~~--~----~~i~~~d~vV~   73 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVT--QRLAQ-----AGAKIYIGHA--E----EHIEGASVVVV   73 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHH--HHHHH-----TTCEEEESCC--G----GGGTTCSEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhh--hHHHH-----CCCeEEECCc--c----ccCCCCCEEEE
Confidence            3578988874443336789999999999999998754322  22222     3555555432  1    23467899998


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      ..|.
T Consensus        74 S~AI   77 (96)
T d1p3da1          74 SSAI   77 (96)
T ss_dssp             CTTS
T ss_pred             CCCc
Confidence            8774

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.25  E-value=0.002  Score=48.74  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=49.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC---chhhhC--C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN---FDEPIR--G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~--~   77 (338)
                      ...+|+|.|+ |-+|...++.+...|. +|+++++++.+.+..+.+..       -+++  |..+.+.   +.+...  +
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-------~~~i--~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-------TDIL--NYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-------SEEE--CGGGSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-------cccc--cccchhHHHHHHHHhhccC
Confidence            3578999975 9999999999988896 79988887766555554421       1222  3333322   222222  5


Q ss_pred             ccEEEEeccc
Q 040253           78 CTGVFHLATP   87 (338)
Q Consensus        78 ~d~vi~~a~~   87 (338)
                      +|+||.+++.
T Consensus        97 ~D~vid~~g~  106 (174)
T d1jqba2          97 VDRVIMAGGG  106 (174)
T ss_dssp             EEEEEECSSC
T ss_pred             cceEEEccCC
Confidence            9999999984

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.25  E-value=0.0085  Score=45.68  Aligned_cols=40  Identities=13%  Similarity=0.184  Sum_probs=33.2

Q ss_pred             CcEEEE-eCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH
Q 040253            5 AETVCV-TGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK   44 (338)
Q Consensus         5 ~~~ilV-tGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~   44 (338)
                      +.+++| +||+|-+|...++.....|.+|++++|+++..+.
T Consensus        29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~   69 (189)
T d1gu7a2          29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDE   69 (189)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHH
T ss_pred             CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccch
Confidence            356666 6999999999999998899999999998766543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0062  Score=44.87  Aligned_cols=66  Identities=21%  Similarity=0.147  Sum_probs=49.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+++|+| .|.||+.+++.|...|.+|.+..++|-.  .++...              |-.....+.+++...|+||-
T Consensus        23 ~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~--al~A~~--------------dG~~v~~~~~a~~~adivvt   85 (163)
T d1li4a1          23 AGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPIN--ALQAAM--------------EGYEVTTMDEACQEGNIFVT   85 (163)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH--HHHHHH--------------TTCEECCHHHHTTTCSEEEE
T ss_pred             cCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccch--hHHhhc--------------CceEeeehhhhhhhccEEEe
Confidence            478999997 9999999999999999999999887633  222221              33333346677788898887


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +.+
T Consensus        86 aTG   88 (163)
T d1li4a1          86 TTG   88 (163)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            766

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.18  E-value=0.0041  Score=43.75  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .++|+|.| +|++|..++..|.++|.+|+++.|++.
T Consensus        30 ~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEEC-cchhHHHHHHHhhcccceEEEEeeccc
Confidence            57899987 899999999999999999999998653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.10  E-value=0.008  Score=45.13  Aligned_cols=73  Identities=15%  Similarity=0.100  Sum_probs=47.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCC-CCCchhhh-----C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAE-EGNFDEPI-----R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d-~~~~~~~~-----~   76 (338)
                      ...+|+|.|++ .+|...++.+...|. .|+++++++.+.+..+.+-..       +.+  |..+ .+...+.+     .
T Consensus        28 ~G~tVlI~GaG-GvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~-------~~i--~~~~~~~~~~~~~~~~~~~   97 (176)
T d2fzwa2          28 PGSVCAVFGLG-GVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT-------ECI--NPQDFSKPIQEVLIEMTDG   97 (176)
T ss_dssp             TTCEEEEECCS-HHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS-------EEE--CGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEecch-hHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc-------EEE--eCCchhhHHHHHHHHHcCC
Confidence            35789999975 589999999988885 666666666666555554221       222  3322 33333333     3


Q ss_pred             CccEEEEecc
Q 040253           77 GCTGVFHLAT   86 (338)
Q Consensus        77 ~~d~vi~~a~   86 (338)
                      ++|+||.+.+
T Consensus        98 g~D~vid~~G  107 (176)
T d2fzwa2          98 GVDYSFECIG  107 (176)
T ss_dssp             CBSEEEECSC
T ss_pred             CCcEeeecCC
Confidence            7999999987

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.06  E-value=0.0042  Score=43.79  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=31.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRD   38 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (338)
                      .+++++|+| +|+||..++..|.+.|.+|+++.|+
T Consensus        19 ~P~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence            467899998 8999999999999999999999875

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.05  E-value=0.0027  Score=48.47  Aligned_cols=39  Identities=15%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKK   43 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~   43 (338)
                      ..++|.|+|| |.+|+.++..++..|++|++++++++..+
T Consensus         3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~   41 (186)
T d1wdka3           3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIE   41 (186)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHh
Confidence            4678999995 99999999999999999999999876543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.02  E-value=0.0067  Score=46.44  Aligned_cols=67  Identities=15%  Similarity=0.087  Sum_probs=48.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+++|.|.| .|-||+.+++.|...|.+|.+.++.........                ..+....++.++++.+|+|+.
T Consensus        48 ~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~----------------~~~~~~~~l~~ll~~sD~i~~  110 (193)
T d1mx3a1          48 RGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLSDGVERA----------------LGLQRVSTLQDLLFHSDCVTL  110 (193)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH----------------HTCEECSSHHHHHHHCSEEEE
T ss_pred             eCceEEEec-cccccccceeeeeccccceeeccCcccccchhh----------------hccccccchhhccccCCEEEE
Confidence            368999997 999999999999999999999988654322211                012224467778888898876


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus       111 ~~pl  114 (193)
T d1mx3a1         111 HCGL  114 (193)
T ss_dssp             CCCC
T ss_pred             eecc
Confidence            6653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.02  E-value=0.0061  Score=42.97  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      ..++|+|.| +|++|..++..|.+.|.+|+++.|.+
T Consensus        29 ~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence            457899997 89999999999999999999998854

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.01  E-value=0.001  Score=50.13  Aligned_cols=118  Identities=14%  Similarity=0.090  Sum_probs=67.7

Q ss_pred             CcEEEEeCCchhhHHH--HHHHHHHC----CCeEEEEEcCCCcHHHHHHHhcC--CCCCCcEEEEecccCCCCCchhhhC
Q 040253            5 AETVCVTGASGFIGSW--LIMRLLER----GYAVRATVRDPDNKKKVKHLLEL--PKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      .|||.|+|| |.+|..  ++..|+..    +.++..++++++..+........  .......     .+....+..+++.
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~-----~i~~~td~~eaL~   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL-----KFEKTMNLDDVII   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCC-----EEEEESCHHHHHT
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCe-----EEEEeCChhhccc
Confidence            479999995 888865  34444432    46899999987654432211110  0000112     2223345677889


Q ss_pred             CccEEEEecccCCCCC------------------CC-------ccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           77 GCTGVFHLATPMDFES------------------KD-------PENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~------------------~~-------~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ++|+|+..++......                  ..       .......-|+.....+++.+++..+...++.+|-
T Consensus        76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TN  152 (171)
T d1obba1          76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAAN  152 (171)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECC
Confidence            9999999986322100                  00       0001123488888889998888774556666653

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0055  Score=42.69  Aligned_cols=36  Identities=25%  Similarity=0.200  Sum_probs=32.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .+++|+|.| +|++|..++..|.+.|.+|+++.|.+.
T Consensus        20 ~p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          20 LPERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence            357899997 899999999999999999999998653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.93  E-value=0.0073  Score=45.40  Aligned_cols=73  Identities=14%  Similarity=0.052  Sum_probs=46.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCe-EEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh---hhC-Cc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYA-VRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE---PIR-GC   78 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~---~~~-~~   78 (338)
                      .+.+|+|.|+ |-+|...++.+...|.+ |++.++++.+.+..+.+..       .+++  |..+.+..++   +.. ++
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-------~~~i--~~~~~~~~~~i~~~t~gg~   97 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-------THVI--NSKTQDPVAAIKEITDGGV   97 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-------SEEE--ETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-------eEEE--eCCCcCHHHHHHHHcCCCC
Confidence            3578999986 99999999999888875 4555666655555444321       1333  4444332222   212 59


Q ss_pred             cEEEEecc
Q 040253           79 TGVFHLAT   86 (338)
Q Consensus        79 d~vi~~a~   86 (338)
                      |+||.+.+
T Consensus        98 D~vid~~G  105 (174)
T d1f8fa2          98 NFALESTG  105 (174)
T ss_dssp             EEEEECSC
T ss_pred             cEEEEcCC
Confidence            99999987

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.87  E-value=0.0049  Score=43.07  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      +++|+|.| +|++|-.++..|.+.|.+|+++.|.+
T Consensus        22 p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEEC-CchHHHHHHHHHHhccccceeeehhc
Confidence            57899998 89999999999999999999999854

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.042  Score=35.91  Aligned_cols=69  Identities=12%  Similarity=0.094  Sum_probs=44.8

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEec
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   85 (338)
                      |+|.++|-.|-==+.|++.|.++|+.|.+.++.....  .+.+.+     .++.+..+  .+++.    ++++|.||...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~--t~~L~~-----~Gi~i~~g--h~~~~----i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETER--TAYLRK-----LGIPIFVP--HSADN----WYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHHHH-----TTCCEESS--CCTTS----CCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChh--HHHHHH-----CCCeEEee--ecccc----cCCCCEEEEec
Confidence            6788877444333468899999999999999875432  222322     35555443  23333    35789999888


Q ss_pred             cc
Q 040253           86 TP   87 (338)
Q Consensus        86 ~~   87 (338)
                      +.
T Consensus        69 AI   70 (89)
T d1j6ua1          69 AV   70 (89)
T ss_dssp             TC
T ss_pred             Cc
Confidence            75

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.82  E-value=0.015  Score=43.68  Aligned_cols=74  Identities=20%  Similarity=0.111  Sum_probs=49.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCC-CCchhhh-----C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEE-GNFDEPI-----R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~-----~   76 (338)
                      .+.+|+|+| +|-||...++.+...|. +|++.++++.+.+..+.+..       -..+  |.... +......     .
T Consensus        28 ~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-------~~~i--~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          28 PGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-------TDCL--NPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-------SEEE--CGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-------Cccc--CCccchhhhhhhHhhhhcC
Confidence            357899997 69999999999999996 67777887776655554321       1222  22222 2222222     3


Q ss_pred             CccEEEEeccc
Q 040253           77 GCTGVFHLATP   87 (338)
Q Consensus        77 ~~d~vi~~a~~   87 (338)
                      ++|+||.+.|.
T Consensus        98 G~d~vie~~G~  108 (174)
T d1e3ia2          98 GVDYSLDCAGT  108 (174)
T ss_dssp             CBSEEEESSCC
T ss_pred             CCcEEEEeccc
Confidence            79999999883

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.81  E-value=0.00085  Score=51.01  Aligned_cols=77  Identities=8%  Similarity=0.095  Sum_probs=47.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..|+|+|.| +|..++.++..|.+.| +|+++.|+.++.+.+.............     ...+...+.......|++|+
T Consensus        17 ~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~dliIn   89 (177)
T d1nvta1          17 KDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFG-----EEVKFSGLDVDLDGVDIIIN   89 (177)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHH-----HHEEEECTTCCCTTCCEEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhh-----hhhhhhhhhhccchhhhhcc
Confidence            468999998 6678999999997666 8999999887766654322110000000     00111223344557899999


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      +...
T Consensus        90 ~tp~   93 (177)
T d1nvta1          90 ATPI   93 (177)
T ss_dssp             CSCT
T ss_pred             CCcc
Confidence            8753

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.78  E-value=0.038  Score=41.09  Aligned_cols=95  Identities=9%  Similarity=0.054  Sum_probs=53.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC-CCeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER-GYAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+||.|.| +|++|+..++.|.+. +.+++++.. ++....             .....     ...++..+..++|+|+
T Consensus         3 kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~-------------~~~~~-----~~~~~~~~~~~~D~Vv   63 (170)
T d1f06a1           3 NIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT-------------KTPVF-----DVADVDKHADDVDVLF   63 (170)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS-------------SSCEE-----EGGGGGGTTTTCSEEE
T ss_pred             cceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc-------------ccccc-----cchhhhhhccccceEE
Confidence            46899998 799999999999875 566665554 432211             11111     1223344556899998


Q ss_pred             EecccCCC---------CCCCc--cchhhhhhhHHHHHHHHHHHhCC
Q 040253           83 HLATPMDF---------ESKDP--ENEVIRPTINGMVSIMRACKNAK  118 (338)
Q Consensus        83 ~~a~~~~~---------~~~~~--~~~~~~~n~~~~~~l~~~~~~~~  118 (338)
                      .+.....+         ...+-  .+.....+......|.+++++.+
T Consensus        64 i~tp~~~h~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~  110 (170)
T d1f06a1          64 LCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (170)
T ss_dssp             ECSCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             EeCCCcccHHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcC
Confidence            87753221         11100  01123344555566777777766

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.77  E-value=0.016  Score=43.56  Aligned_cols=73  Identities=15%  Similarity=0.064  Sum_probs=51.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchh-h---h--CC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDE-P---I--RG   77 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~---~--~~   77 (338)
                      ..+|+|+| +|-+|...++.+...| .+|+++++++++.+..+.+...       ..+  |..+.+...+ .   .  .+
T Consensus        30 g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~-------~~i--n~~~~~~~~~~~~~~~~g~G   99 (176)
T d1d1ta2          30 GSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT-------ECI--SPKDSTKPISEVLSEMTGNN   99 (176)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS-------EEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred             CCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc-------EEE--CccccchHHHHHHHHhcccc
Confidence            57899998 5999999999999998 5899999998887766655321       222  3334333222 2   2  37


Q ss_pred             ccEEEEeccc
Q 040253           78 CTGVFHLATP   87 (338)
Q Consensus        78 ~d~vi~~a~~   87 (338)
                      +|++|.+.+.
T Consensus       100 ~d~vi~~~g~  109 (176)
T d1d1ta2         100 VGYTFEVIGH  109 (176)
T ss_dssp             CCEEEECSCC
T ss_pred             ceEEEEeCCc
Confidence            9999999873

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0079  Score=42.46  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=31.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      +++++|.| +|++|-.++..|.+.|.+|+++.|++
T Consensus        22 pk~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEc-CCccHHHHHHHHhcCCcEEEEEeecc
Confidence            58999998 89999999999999999999999965

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.72  E-value=0.0071  Score=42.02  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=31.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      .+++++|.| +|++|-.++..|.+.|.+|+++.|.+
T Consensus        20 ~p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHhhcccceEEEeeec
Confidence            358899987 89999999999999999999998854

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.71  E-value=0.01  Score=44.03  Aligned_cols=44  Identities=20%  Similarity=0.202  Sum_probs=35.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHL   48 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~   48 (338)
                      ...+|+|.|+ |-+|...++.+...|.+|+++++++.+.+..+.+
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            3578999885 8899999998888999999999987666555443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.65  E-value=0.033  Score=42.48  Aligned_cols=74  Identities=14%  Similarity=0.011  Sum_probs=47.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC---chhhhC--C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN---FDEPIR--G   77 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~---~~~~~~--~   77 (338)
                      .+.+|+|.| +|-+|...+..+...|. +|+++++++++.+..+.+        ++..+. |-.+.+.   +.++..  +
T Consensus        25 ~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~--------Ga~~~~-~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          25 PGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ--------GFEIAD-LSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCEEEE-TTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc--------cccEEE-eCCCcCHHHHHHHHhCCCC
Confidence            367999998 59999888888877775 788888876655544432        233332 3333222   222322  6


Q ss_pred             ccEEEEeccc
Q 040253           78 CTGVFHLATP   87 (338)
Q Consensus        78 ~d~vi~~a~~   87 (338)
                      +|++|.+.|.
T Consensus        95 ~D~vid~vG~  104 (195)
T d1kola2          95 VDCAVDAVGF  104 (195)
T ss_dssp             EEEEEECCCT
T ss_pred             cEEEEECccc
Confidence            9999999874

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.63  E-value=0.017  Score=43.85  Aligned_cols=67  Identities=21%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      ..++|.|.| .|-||+.+++.|...|.+|...+|...........               .+....++.++++.+|+|+.
T Consensus        43 ~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~---------------~~~~~~~l~~~l~~sD~v~~  106 (188)
T d2naca1          43 EAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL---------------NLTWHATREDMYPVCDVVTL  106 (188)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH---------------TCEECSSHHHHGGGCSEEEE
T ss_pred             cccceeecc-ccccchhhhhhhhccCceEEEEeeccccccccccc---------------cccccCCHHHHHHhccchhh
Confidence            357899987 99999999999999999999999866544332221               12234566778888898876


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      +..
T Consensus       107 ~~p  109 (188)
T d2naca1         107 NCP  109 (188)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.61  E-value=0.0068  Score=42.71  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=32.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .+++++|.| +|++|-.++..|.+.|.+|+++.|++.
T Consensus        24 ~p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            468999998 899999999999999999999998654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.58  E-value=0.0078  Score=45.11  Aligned_cols=74  Identities=18%  Similarity=0.077  Sum_probs=45.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhh--CCccEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPI--RGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~v   81 (338)
                      ..+|+|.|+ |.+|...++.+...|. .|+++++++++.+..+.+.       ..+++..+-.+.+.+.+..  .++|+|
T Consensus        33 g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~g-------a~~~i~~~~~~~~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          33 GAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLG-------ADHVVDARRDPVKQVMELTRGRGVNVA  104 (172)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTT-------CSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcc-------cceeecCcccHHHHHHHhhCCCCceEE
Confidence            578999885 9999999999888774 6777777766555544432       1133322211112222222  269999


Q ss_pred             EEecc
Q 040253           82 FHLAT   86 (338)
Q Consensus        82 i~~a~   86 (338)
                      |.+++
T Consensus       105 id~~g  109 (172)
T d1h2ba2         105 MDFVG  109 (172)
T ss_dssp             EESSC
T ss_pred             EEecC
Confidence            99987

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.56  E-value=0.02  Score=43.96  Aligned_cols=66  Identities=20%  Similarity=0.145  Sum_probs=46.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-CccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-GCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi   82 (338)
                      .+++|.|-| .|.+|+++++.|.+.|.+|++.+.+.........        .+.+.+        ...+++. ++|+++
T Consensus        26 ~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~--------~g~~~~--------~~~~~~~~~~DI~i   88 (201)
T d1c1da1          26 DGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA--------LGHTAV--------ALEDVLSTPCDVFA   88 (201)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH--------TTCEEC--------CGGGGGGCCCSEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHh--------hccccc--------Cccccccccceeee
Confidence            468999997 9999999999999999999988776544433322        122222        1234454 799999


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      -||.
T Consensus        89 PcA~   92 (201)
T d1c1da1          89 PCAM   92 (201)
T ss_dssp             ECSC
T ss_pred             cccc
Confidence            8875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.55  E-value=0.0089  Score=42.73  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      ..++|+|.| +|++|..++..|.+.|.+|+++.+.+.
T Consensus        34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeeccc
Confidence            358999997 899999999999999999999998654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.52  E-value=0.019  Score=43.04  Aligned_cols=73  Identities=19%  Similarity=0.088  Sum_probs=50.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCC-chhhh-----C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGN-FDEPI-----R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~-~~~~~-----~   76 (338)
                      ...+|+|.|+ |-+|...++.+...|. +|+++++++++.+..+.+-..       .++  |..+.+. +.+..     .
T Consensus        27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~-------~~i--~~~~~d~~~~~~~~~~~~~   96 (174)
T d1p0fa2          27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT-------ECL--NPKDYDKPIYEVICEKTNG   96 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS-------EEE--CGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc-------EEE--cCCCchhHHHHHHHHhcCC
Confidence            3578999985 8999999999998885 788888887776665554221       222  3333332 22222     2


Q ss_pred             CccEEEEecc
Q 040253           77 GCTGVFHLAT   86 (338)
Q Consensus        77 ~~d~vi~~a~   86 (338)
                      ++|+||.+.+
T Consensus        97 G~d~vid~~g  106 (174)
T d1p0fa2          97 GVDYAVECAG  106 (174)
T ss_dssp             CBSEEEECSC
T ss_pred             CCcEEEEcCC
Confidence            7999999887

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.50  E-value=0.022  Score=40.54  Aligned_cols=71  Identities=15%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             EEEEeCCchhhHHHHHHHHHHC-CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-----CccE
Q 040253            7 TVCVTGASGFIGSWLIMRLLER-GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-----GCTG   80 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-----~~d~   80 (338)
                      ||.|.|++|..|+.+++.+.+. ++++.+..-..+.......        .++. +..|++.|+...+.++     ++-.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~--------~~~D-vvIDFS~p~~~~~~~~~~~~~~~~~   71 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTD--------GNTE-VVIDFTHPDVVMGNLEFLIDNGIHA   71 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHT--------TTCS-EEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhcc--------ccCC-EEEEcccHHHHHHHHHHHHhcCCCE
Confidence            7999999999999999988775 5676554432222222111        1222 4568888887766553     5667


Q ss_pred             EEEecc
Q 040253           81 VFHLAT   86 (338)
Q Consensus        81 vi~~a~   86 (338)
                      |+=+-|
T Consensus        72 ViGTTG   77 (135)
T d1yl7a1          72 VVGTTG   77 (135)
T ss_dssp             EECCCC
T ss_pred             EEeccc
Confidence            764333

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.48  E-value=0.0079  Score=42.28  Aligned_cols=34  Identities=35%  Similarity=0.483  Sum_probs=30.5

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      ++|+|.| +|++|-.++..|.+.|.+|+++.|++.
T Consensus        33 ~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             CcEEEEC-CcHHHHHHHHHhhcccceEEEEecccc
Confidence            6788887 899999999999999999999988653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.48  E-value=0.01  Score=41.88  Aligned_cols=35  Identities=14%  Similarity=0.135  Sum_probs=31.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      .+++++|.| +|+||-.++..|.+.|.+|+++.|.+
T Consensus        25 ~p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            468999998 89999999999999999999998855

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0086  Score=39.79  Aligned_cols=71  Identities=18%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+|+|.|. |-.|..+++.|.++|++|++.+.+...... ..   ..   ..+..+.+..     -...+.++|.||-
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-~~---~~---~~~~~~~~~~-----~~~~~~~~d~vi~   70 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGL-DK---LP---EAVERHTGSL-----NDEWLMAADLIVA   70 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTG-GG---SC---TTSCEEESBC-----CHHHHHHCSEEEE
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhH-HH---Hh---hccceeeccc-----chhhhccCCEEEE
Confidence            4689999985 889999999999999999999985543211 00   00   2233333332     1234557788887


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      .-|.
T Consensus        71 SPGi   74 (93)
T d2jfga1          71 SPGI   74 (93)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            6663

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.39  E-value=0.02  Score=43.61  Aligned_cols=67  Identities=13%  Similarity=0.022  Sum_probs=48.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .+++.|.| .|.||+.+++.|...|.+|.+.++...........               .....+++.++++.+|+|+.+
T Consensus        47 g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~---------------~~~~~~~l~~ll~~sD~v~l~  110 (191)
T d1gdha1          47 NKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASY---------------QATFHDSLDSLLSVSQFFSLN  110 (191)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH---------------TCEECSSHHHHHHHCSEEEEC
T ss_pred             ccceEEee-cccchHHHHHHHHhhccccccccccccccchhhcc---------------cccccCCHHHHHhhCCeEEec
Confidence            58999997 99999999999999999999998865543322211               112235577888889988766


Q ss_pred             ccc
Q 040253           85 ATP   87 (338)
Q Consensus        85 a~~   87 (338)
                      ...
T Consensus       111 ~pl  113 (191)
T d1gdha1         111 APS  113 (191)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.28  E-value=0.01  Score=45.59  Aligned_cols=62  Identities=19%  Similarity=0.164  Sum_probs=46.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .++|.|.| .|-||+.+++.|...|.+|++.++.......           ..+        +..++.++++.+|+|+.+
T Consensus        45 ~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~--------~~~~l~~l~~~~D~v~~~  104 (199)
T d1dxya1          45 QQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-----------PDF--------DYVSLEDLFKQSDVIDLH  104 (199)
T ss_dssp             GSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCSSCC-----------TTC--------EECCHHHHHHHCSEEEEC
T ss_pred             ceeeeeee-cccccccccccccccceeeeccCCccchhhh-----------cch--------hHHHHHHHHHhcccceee
Confidence            58999997 9999999999999999999999886543110           111        234567788889988876


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus       105 ~p  106 (199)
T d1dxya1         105 VP  106 (199)
T ss_dssp             CC
T ss_pred             ec
Confidence            54

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.26  E-value=0.016  Score=43.91  Aligned_cols=65  Identities=20%  Similarity=0.125  Sum_probs=47.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .+++.|.| .|.||+.+++.|...|.+|.+.++..........         .+        ...++.++++++|+|+.+
T Consensus        44 ~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~---------~~--------~~~~l~ell~~sDiv~~~  105 (184)
T d1ygya1          44 GKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL---------GI--------ELLSLDDLLARADFISVH  105 (184)
T ss_dssp             TCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH---------TC--------EECCHHHHHHHCSEEEEC
T ss_pred             ceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChhHHhhc---------Cc--------eeccHHHHHhhCCEEEEc
Confidence            57888887 8999999999999999999999886654332211         11        123466788889988766


Q ss_pred             ccc
Q 040253           85 ATP   87 (338)
Q Consensus        85 a~~   87 (338)
                      ...
T Consensus       106 ~Pl  108 (184)
T d1ygya1         106 LPK  108 (184)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.05  E-value=0.008  Score=46.10  Aligned_cols=38  Identities=26%  Similarity=0.318  Sum_probs=30.7

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      |||.|.| .||+|..++..| ++|++|++++-++...+.+
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l   38 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSKVDKI   38 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHHHHHH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHHHHHH
Confidence            6899996 999999998755 6799999998876554443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.04  E-value=0.014  Score=46.57  Aligned_cols=38  Identities=21%  Similarity=0.345  Sum_probs=33.5

Q ss_pred             CCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            2 GSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         2 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      ++..+||+|+| +|..|..++..|.++|++|.++.|++.
T Consensus         1 ~~~~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           1 SPTTDRIAVVG-GSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCCCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            35678999998 899999999999999999999988643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.022  Score=42.00  Aligned_cols=57  Identities=21%  Similarity=0.223  Sum_probs=44.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+|+|.|.+..+|+.++..|.++|.+|+.......+                             +.+..+++|+||.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~-----------------------------l~~~~~~ADivI~   86 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN-----------------------------LRHHVENADLLIV   86 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC-----------------------------HHHHHHHCSEEEE
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhccccccccccch-----------------------------hHHHHhhhhHhhh
Confidence            47999999999999999999999999999876443222                             3344556788888


Q ss_pred             ecccCC
Q 040253           84 LATPMD   89 (338)
Q Consensus        84 ~a~~~~   89 (338)
                      .+|...
T Consensus        87 a~G~p~   92 (166)
T d1b0aa1          87 AVGKPG   92 (166)
T ss_dssp             CSCCTT
T ss_pred             hccCcc
Confidence            887544

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.97  E-value=0.0036  Score=46.77  Aligned_cols=117  Identities=10%  Similarity=0.149  Sum_probs=62.5

Q ss_pred             CcEEEEeCCchhhHHH-HHHHHHHC-----CCeEEEEEcCCCcHHHHHHHhcC--CCCCCcEEEEecccCCCCCchhhhC
Q 040253            5 AETVCVTGASGFIGSW-LIMRLLER-----GYAVRATVRDPDNKKKVKHLLEL--PKASTHLTLWKADLAEEGNFDEPIR   76 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~~~~~~~   76 (338)
                      ..||.|+||. .+|.. ++..|+..     +.++..++.+++..+........  .......+...     ..+..++++
T Consensus         3 ~~KI~iIGaG-sv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~eal~   76 (167)
T d1u8xx1           3 SFSIVIAGGG-STFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA-----TTDPEEAFT   76 (167)
T ss_dssp             CEEEEEECTT-SSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE-----ESCHHHHHS
T ss_pred             CceEEEECCC-hhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe-----cCChhhccC
Confidence            4589999974 45544 44555542     24788888877654422111110  00001112211     234567889


Q ss_pred             CccEEEEecccCCCCCCCccchhh--------------------hhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           77 GCTGVFHLATPMDFESKDPENEVI--------------------RPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        77 ~~d~vi~~a~~~~~~~~~~~~~~~--------------------~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      ++|+||.+|+.......... +.+                    .-|+...+.+++.+.+..+-..++.+|-
T Consensus        77 ~AD~Vvitag~~~~~g~~rd-~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TN  147 (167)
T d1u8xx1          77 DVDFVMAHIRVGKYAMRALD-EQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSN  147 (167)
T ss_dssp             SCSEEEECCCTTHHHHHHHH-HHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCEEEECCCcCCCCceeHH-HhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            99999999985331111111 111                    2245666777777777764566776664

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.012  Score=37.38  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      +|+|.|.| +|.+|+-++..-...|+++.+++.+++.
T Consensus         1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            58999998 8999999999999999999999876543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.79  E-value=0.021  Score=39.73  Aligned_cols=35  Identities=20%  Similarity=0.060  Sum_probs=31.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .++|+|.| +|++|..++..|...|.+|.++.|.+.
T Consensus        22 ~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          22 GSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence            57899987 899999999999999999999998653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.022  Score=42.87  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      ..|+|+|+| +|..|...+..|.++||+|+++.+.+.-
T Consensus        42 ~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          42 QKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHSEI   78 (179)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccCcc
Confidence            468999998 8999999999999999999999987643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.68  E-value=0.045  Score=40.94  Aligned_cols=82  Identities=12%  Similarity=0.153  Sum_probs=46.6

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcC-CC--CCCcE-EEEecccCCCCCchhhhCCcc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLEL-PK--ASTHL-TLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~-~~--~~~~~-~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      |-||.|-| .|.||+.++|.|.+++ .+|+++....+.......+... ..  ..... .+-...+.-...+.+++.++|
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD   79 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD   79 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence            45899998 8999999999999875 5777776543332222111111 00  00000 000111222334556667899


Q ss_pred             EEEEeccc
Q 040253           80 GVFHLATP   87 (338)
Q Consensus        80 ~vi~~a~~   87 (338)
                      +|+-|.+.
T Consensus        80 iViecTG~   87 (178)
T d1b7go1          80 IVVDTTPN   87 (178)
T ss_dssp             EEEECCST
T ss_pred             EEEECCCC
Confidence            99999874

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=94.64  E-value=0.11  Score=36.74  Aligned_cols=85  Identities=13%  Similarity=0.070  Sum_probs=53.9

Q ss_pred             CcEEEEeCCc---hhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            5 AETVCVTGAS---GFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~ilVtGat---G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .++|.|.|||   +..|..+++.|.+.||++..+.-++..                 ..+. ...-..++.++-..+|.|
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-----------------~~i~-g~~~~~~l~~i~~~iD~v   74 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-----------------EELF-GEEAVASLLDLKEPVDIL   74 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-----------------SEET-TEECBSSGGGCCSCCSEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-----------------ceee-ceecccchhhccCCCceE
Confidence            5789999999   789999999999999998877543221                 0111 222233444444578988


Q ss_pred             EEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEE
Q 040253           82 FHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVF  125 (338)
Q Consensus        82 i~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~  125 (338)
                      +-+...         +.        ...+++.|.+.+ ++.+++
T Consensus        75 ~v~~p~---------~~--------v~~~v~~~~~~g-~k~i~~  100 (136)
T d1iuka_          75 DVFRPP---------SA--------LMDHLPEVLALR-PGLVWL  100 (136)
T ss_dssp             EECSCH---------HH--------HTTTHHHHHHHC-CSCEEE
T ss_pred             EEeccH---------HH--------HHHHHHHHHhhC-CCeEEE
Confidence            866542         11        234566666667 665554

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.64  E-value=0.018  Score=42.72  Aligned_cols=43  Identities=21%  Similarity=0.145  Sum_probs=34.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKH   47 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~   47 (338)
                      ...+|+|.| +|-+|...++.+...|.+|+++++++++....+.
T Consensus        27 ~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          27 PGEWVAIYG-IGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             TTCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEee-cccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            357899987 5889999999998899999999887776655544

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.62  E-value=0.0073  Score=45.16  Aligned_cols=120  Identities=10%  Similarity=-0.032  Sum_probs=63.3

Q ss_pred             cEEEEeCC-chhhHHHHHHHHHHCC----CeEEEEEcCCCc--HHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCc
Q 040253            6 ETVCVTGA-SGFIGSWLIMRLLERG----YAVRATVRDPDN--KKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGC   78 (338)
Q Consensus         6 ~~ilVtGa-tG~iG~~l~~~L~~~g----~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (338)
                      +||.|+|| +.+.+..++..+....    .++..++.++..  .+.............+.   ...+....+..++++++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~---~~~~~~~td~~~al~ga   78 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV---PIEIHLTLDRRRALDGA   78 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC---CCEEEEESCHHHHHTTC
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCC---CceeeecCCchhhcCCC
Confidence            68999996 3344555555554432    378888876543  33222211100000000   01112234456778899


Q ss_pred             cEEEEecccCCCCCCCc-------------------cchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           79 TGVFHLATPMDFESKDP-------------------ENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        79 d~vi~~a~~~~~~~~~~-------------------~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                      |+||.+|+.........                   .-.....|+...+.+++.+.+..+-..++.+|-
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtN  147 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTN  147 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence            99999997432100000                   001234577778888888888874556665553

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.49  E-value=0.021  Score=41.45  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=29.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~   39 (338)
                      ||+|.|.|+||.||...+.-+.+.  .++|.+++-+.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~   37 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK   37 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            689999999999999999988776  37888887543

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.39  E-value=0.046  Score=39.55  Aligned_cols=35  Identities=31%  Similarity=0.344  Sum_probs=30.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~   39 (338)
                      +|+|.|.|+||-||.....-+.+.  .++|.+++-+.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            689999999999999999988775  47888887654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.24  E-value=0.026  Score=46.66  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=31.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      +|+|+|+| +|+-|...|..|.++|++|.++-++..
T Consensus         2 ~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            58999998 999999999999999999999987654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.19  E-value=0.052  Score=42.37  Aligned_cols=68  Identities=15%  Similarity=-0.005  Sum_probs=47.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-CccEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-GCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi   82 (338)
                      ..++|+|-| -|.+|+++++.|.+.|.+|++.+.+...........       +.+.+     +.+   +++. ++|+++
T Consensus        38 ~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~-------g~~~~-----~~~---~~~~~~cDIl~  101 (230)
T d1leha1          38 EGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE-------GADAV-----APN---AIYGVTCDIFA  101 (230)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-------CCEEC-----CGG---GTTTCCCSEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc-------CCccc-----CCc---ccccccccEec
Confidence            468999997 999999999999999999998876654443333221       22222     222   3333 799999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      -||-.
T Consensus       102 PcA~~  106 (230)
T d1leha1         102 PCALG  106 (230)
T ss_dssp             ECSCS
T ss_pred             ccccc
Confidence            99963

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.15  E-value=0.025  Score=42.81  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=31.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPD   40 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   40 (338)
                      ++||+|+| +|..|...+..|.++|+ +|+++.|++.
T Consensus         4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            68999998 89999999999999998 5999988654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.11  E-value=0.29  Score=36.06  Aligned_cols=76  Identities=16%  Similarity=0.266  Sum_probs=46.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEc-CCCcHHHHHHHhcCCCCCCcEEEEec-----------ccCCCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVR-DPDNKKKVKHLLELPKASTHLTLWKA-----------DLAEEGN   70 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------Dl~d~~~   70 (338)
                      |.+||.|-| -|-||+.+++.|.+++ .+|.++.. ++......  +...     ++..+..           .+.....
T Consensus         1 M~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~--l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   72 (172)
T d2czca2           1 MKVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYR--AKEL-----GIPVYAASEEFIPRFEKEGFEVAGT   72 (172)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHH--HHHT-----TCCEEESSGGGHHHHHHHTCCCSCB
T ss_pred             CcEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEecCCChHHHHH--hhhc-----CceeecccccceeeecccCccccch
Confidence            357999998 7999999999998765 56666654 33222211  1111     1111111           1122345


Q ss_pred             chhhhCCccEEEEeccc
Q 040253           71 FDEPIRGCTGVFHLATP   87 (338)
Q Consensus        71 ~~~~~~~~d~vi~~a~~   87 (338)
                      +..+++++|+|+-|.|.
T Consensus        73 ~~~~~~~vDvViEcTG~   89 (172)
T d2czca2          73 LNDLLEKVDIIVDATPG   89 (172)
T ss_dssp             HHHHHTTCSEEEECCST
T ss_pred             hhhhhccCCEEEECCCC
Confidence            56667799999999884

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.023  Score=41.38  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRD   38 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (338)
                      .+++|||+|| |.+|..-++.|++.|.+|+++...
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999995 999999999999999999999753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.95  E-value=0.022  Score=45.78  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=29.3

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      .|+|+| +|..|..++.+|.++|++|.++.++.
T Consensus         6 DvvIIG-aGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIG-GGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            399997 89999999999999999999998864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.73  E-value=0.098  Score=38.76  Aligned_cols=74  Identities=16%  Similarity=0.142  Sum_probs=47.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCc-hhhh-----C
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNF-DEPI-----R   76 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~-~~~~-----~   76 (338)
                      ...+|+|.|+.| +|...+..+...| .+|+++++++++.+....+-.       -+.+  |..+.+.. .+..     .
T Consensus        28 ~g~~VlI~G~Gg-~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA-------d~~i--n~~~~~~~~~~~~~~~~~~   97 (175)
T d1cdoa2          28 PGSTCAVFGLGA-VGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA-------TDFV--NPNDHSEPISQVLSKMTNG   97 (175)
T ss_dssp             TTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-------CEEE--CGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEEecCC-ccchHHHHHHHHhhchheeecchHHHHHHHHHcCC-------cEEE--cCCCcchhHHHHHHhhccC
Confidence            357899998655 7777777777776 578888888777666555422       1222  33333322 2222     2


Q ss_pred             CccEEEEeccc
Q 040253           77 GCTGVFHLATP   87 (338)
Q Consensus        77 ~~d~vi~~a~~   87 (338)
                      ++|+|+.+.+.
T Consensus        98 G~d~vid~~G~  108 (175)
T d1cdoa2          98 GVDFSLECVGN  108 (175)
T ss_dssp             CBSEEEECSCC
T ss_pred             CcceeeeecCC
Confidence            79999999873

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.68  E-value=0.047  Score=39.78  Aligned_cols=37  Identities=16%  Similarity=0.128  Sum_probs=30.3

Q ss_pred             CcEEEEe-CCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            5 AETVCVT-GASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         5 ~~~ilVt-GatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      .+.++|. .|.||+|..++..|.++|.+|+++.+.+.-
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            4566665 357999999999999999999999986543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=93.62  E-value=0.0095  Score=43.60  Aligned_cols=62  Identities=13%  Similarity=0.135  Sum_probs=36.2

Q ss_pred             EEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEecc
Q 040253            9 CVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHLAT   86 (338)
Q Consensus         9 lVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   86 (338)
                      -++| +|.+|++|++.|.+.++.+.+.+|++++.+.+......               ...+..++++..|+||-+..
T Consensus         3 gfIG-~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~---------------~~~~~~~~~~~~DiVil~v~   64 (153)
T d2i76a2           3 NFVG-TGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGG---------------KAATLEKHPELNGVVFVIVP   64 (153)
T ss_dssp             EEES-CCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCC---------------CCCSSCCCCC---CEEECSC
T ss_pred             EEEe-CcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccc---------------cccchhhhhccCcEEEEecc
Confidence            3555 99999999998866555456788887777666543211               11233456677899986653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.30  E-value=0.041  Score=45.29  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      ..++|+|+| +|..|...+..|.++|++|.++.+++
T Consensus        29 ~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            468999998 89999999999999999999997754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.22  E-value=0.059  Score=42.14  Aligned_cols=37  Identities=30%  Similarity=0.342  Sum_probs=32.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      ..++|+|+| +|+.|...+..|.++|++|+++.++..-
T Consensus        48 ~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          48 NKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecccc
Confidence            468999998 8999999999999999999999876543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=93.06  E-value=0.052  Score=40.21  Aligned_cols=34  Identities=18%  Similarity=0.090  Sum_probs=29.2

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY--AVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   39 (338)
                      +|||+|.| +|++|..++..|.+.+.  +|+++.+++
T Consensus         2 gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            68999998 89999999999998874  788877654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.06  E-value=0.035  Score=44.93  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      |+|+|+| +|.-|...+.+|.++|++|.++-+++.
T Consensus         1 m~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVG-GGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEEC-CBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            5899998 699999999999999999999977543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.02  E-value=0.044  Score=44.40  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=30.7

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      .|||+|+| +|.-|...+.+|.++|++|.++.+++
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            48999997 89999999999999999999997754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.93  E-value=0.053  Score=45.00  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=31.3

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCC--CeEEEEEcCCC
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERG--YAVRATVRDPD   40 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g--~~V~~~~r~~~   40 (338)
                      +.+|+|+|+| +|.-|..++..|+++|  ++|+++-|+..
T Consensus         2 ~~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           2 PTIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CSCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            3478999998 8999999999998876  69999988653

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.1  Score=44.83  Aligned_cols=76  Identities=17%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCCCcHHH-------------------H-HHHhcCCCCCCcEEEEecc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGY-AVRATVRDPDNKKK-------------------V-KHLLELPKASTHLTLWKAD   64 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-------------------~-~~~~~~~~~~~~~~~~~~D   64 (338)
                      +||||.|+ |-+|.++++.|+..|. ++.+++.+.-...-                   . +.+.... ..-++..+..+
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~~~~~  115 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV-PNCNVVPHFNK  115 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS-TTCCCEEECSC
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhC-CCCceEeeecc
Confidence            58999996 5599999999999995 78888753211111                   1 1111111 01345666666


Q ss_pred             cCCCCCchhhhCCccEEEEec
Q 040253           65 LAEEGNFDEPIRGCTGVFHLA   85 (338)
Q Consensus        65 l~d~~~~~~~~~~~d~vi~~a   85 (338)
                      +.+..  ...+++.|+||.+.
T Consensus       116 i~~~~--~~~~~~~DlVi~~~  134 (426)
T d1yovb1         116 IQDFN--DTFYRQFHIIVCGL  134 (426)
T ss_dssp             GGGBC--HHHHTTCSEEEECC
T ss_pred             ccchH--HHHHHhcchheecc
Confidence            65533  46778999999765

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.15  Score=45.17  Aligned_cols=109  Identities=15%  Similarity=0.133  Sum_probs=64.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHH--------------------HhcCCCCCCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKH--------------------LLELPKASTHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~   63 (338)
                      ..+|+|.|+ |-+|.++++.|+..| .++++++.+.-....+..                    +..+.. .-+++.+..
T Consensus        25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp-~v~i~~~~~  102 (529)
T d1yova1          25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNS-DVSGSFVEE  102 (529)
T ss_dssp             HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCT-TSBCCEESS
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCC-CCcEEEEcC
Confidence            368999985 669999999999999 478887654322222211                    111110 023444444


Q ss_pred             ccCCC-CCchhhhCCccEEEEecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCceeee
Q 040253           64 DLAEE-GNFDEPIRGCTGVFHLATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAGTLD  133 (338)
Q Consensus        64 Dl~d~-~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~v~~  133 (338)
                      +..+. +...+.+.+.|+||.+..        +        ......+-++|+..+ ++ ||+.++.+.||
T Consensus       103 ~~~~~~~~~~~~~~~~dvVv~~~~--------~--------~~~~~~l~~~c~~~~-ip-~i~~~~~G~~G  155 (529)
T d1yova1         103 SPENLLDNDPSFFCRFTVVVATQL--------P--------ESTSLRLADVLWNSQ-IP-LLICRTYGLVG  155 (529)
T ss_dssp             CHHHHHHSCGGGGGGCSEEEEESC--------C--------HHHHHHHHHHHHHHT-CC-EEEEEEETTEE
T ss_pred             CchhhhhhHHHHhcCCCEEEECCC--------C--------HHHHHHHHHHHHHcC-CC-EEEEeccCCEE
Confidence            43321 122345667899996642        1        112345677888877 54 88887766665

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.74  E-value=0.085  Score=36.91  Aligned_cols=93  Identities=10%  Similarity=0.027  Sum_probs=56.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHH-CCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC-CccEEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLE-RGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR-GCTGVFH   83 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~d~vi~   83 (338)
                      -+|+|.| +|.+|+.+++++.. .++++.++..+.+.... +.+       .++.++.     .+.+.+..+ .++.++-
T Consensus         4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G-~~I-------~Gi~V~~-----~~~l~~~~~~~i~iai~   69 (126)
T d2dt5a2           4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVG-RPV-------RGGVIEH-----VDLLPQRVPGRIEIALL   69 (126)
T ss_dssp             EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT-CEE-------TTEEEEE-----GGGHHHHSTTTCCEEEE
T ss_pred             ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC-CEE-------CCEEEec-----HHHHHHHHhhcccEEEE
Confidence            4799998 89999999997753 47888888765433210 000       2445442     344555554 4555554


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecCce
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSSAG  130 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss~~  130 (338)
                      +...                 .....+++.+.+.+ ++.+..++...
T Consensus        70 ~i~~-----------------~~~~~I~d~l~~~g-Ik~I~~f~~~~   98 (126)
T d2dt5a2          70 TVPR-----------------EAAQKAADLLVAAG-IKGILNFAPVV   98 (126)
T ss_dssp             CSCH-----------------HHHHHHHHHHHHHT-CCEEEECSSSC
T ss_pred             eCCH-----------------HHHHHHHHHHHHcC-CCEEeecCcee
Confidence            3321                 11345777788888 88888776644

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.041  Score=45.03  Aligned_cols=35  Identities=17%  Similarity=0.158  Sum_probs=30.9

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      |..|+|+| +|+-|..++.+|.++|++|.++.++..
T Consensus         1 M~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVG-SGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            56899998 899999999999999999999977543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.36  Score=35.38  Aligned_cols=39  Identities=18%  Similarity=0.138  Sum_probs=34.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNK   42 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~   42 (338)
                      .+|+|+|.|-+..+|+.++..|.++|.+|+.......+.
T Consensus        38 ~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l   76 (170)
T d1a4ia1          38 AGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHL   76 (170)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSH
T ss_pred             ccceEEEEecCCccchHHHHHHHhccCceEEEecccccH
Confidence            479999999999999999999999999999887655443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=92.49  E-value=0.12  Score=37.57  Aligned_cols=67  Identities=16%  Similarity=0.148  Sum_probs=49.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .+|+++|.| =|.+|+-++++|...|.+|+++-.+|-.  .++...      .++++        ..+.++++..|+||-
T Consensus        22 aGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~--alqA~m------dGf~v--------~~~~~a~~~aDi~vT   84 (163)
T d1v8ba1          22 SGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPIC--AIQAVM------EGFNV--------VTLDEIVDKGDFFIT   84 (163)
T ss_dssp             TTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHH--HHHHHT------TTCEE--------CCHHHHTTTCSEEEE
T ss_pred             cCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchh--hHHHHh------cCCcc--------CchhHccccCcEEEE
Confidence            468999997 9999999999999999999998877633  333221      23333        344577888888887


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      .-|.
T Consensus        85 aTGn   88 (163)
T d1v8ba1          85 CTGN   88 (163)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            7664

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.30  E-value=0.087  Score=38.33  Aligned_cols=37  Identities=19%  Similarity=0.116  Sum_probs=29.3

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHH
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKV   45 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (338)
                      ||-++| .|.+|+.++++|++.|+.+ +..|+.++....
T Consensus         2 kIg~IG-lG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~   38 (156)
T d2cvza2           2 KVAFIG-LGAMGYPMAGHLARRFPTL-VWNRTFEKALRH   38 (156)
T ss_dssp             CEEEEC-CSTTHHHHHHHHHTTSCEE-EECSSTHHHHHH
T ss_pred             eEEEEe-HHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHH
Confidence            688887 7999999999999988865 567776655443

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.09  E-value=1.1  Score=32.55  Aligned_cols=81  Identities=19%  Similarity=0.204  Sum_probs=52.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCC----cEE------------EEecccCCCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKAST----HLT------------LWKADLAEEG   69 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~------------~~~~Dl~d~~   69 (338)
                      |||.|=| =|-||+.+.|.|.+++.+|.++.- ....+.+..+....+.+.    .++            +....-.|++
T Consensus         1 ikigING-fGRIGR~~~R~l~~~~i~iv~INd-~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~   78 (168)
T d2g82a1           1 MKVGING-FGRIGRQVFRILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (168)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEC-SSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             CEEEEEC-CcHHHHHHHHHHhcCCCEEEEECC-CcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence            4788876 899999999999999988877764 445666666655433221    111            1111223455


Q ss_pred             CchhhhCCccEEEEecccC
Q 040253           70 NFDEPIRGCTGVFHLATPM   88 (338)
Q Consensus        70 ~~~~~~~~~d~vi~~a~~~   88 (338)
                      .+...-.++|+|+-|.|..
T Consensus        79 ~i~W~~~gvdiViEcTG~f   97 (168)
T d2g82a1          79 EIPWAEAGVGVVIESTGVF   97 (168)
T ss_dssp             GCCTGGGTEEEEEECSSSC
T ss_pred             HCcccccCCceeEeccccc
Confidence            5444445899999999853

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.09  E-value=0.078  Score=39.43  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=28.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      .++|+|.| +|++|-.++..|.+.|.+|.++.+.+
T Consensus         3 ~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEEC-CcHHHHHHHHHHHHcCCceEEEEecC
Confidence            57899987 89999999999999998877766544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.16  Score=42.39  Aligned_cols=100  Identities=18%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             cEEE-EeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC-CchhhhCCccEEEE
Q 040253            6 ETVC-VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG-NFDEPIRGCTGVFH   83 (338)
Q Consensus         6 ~~il-VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~d~vi~   83 (338)
                      .+|+ +.+|+|.+|..|++    ++.+|+++.-+++.....+....... -.+++++.+|..+.- ........+|+||-
T Consensus       214 ~~vlDLycG~G~fsl~La~----~~~~V~gvE~~~~ai~~A~~na~~n~-i~n~~~~~~~~~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         214 DRVLDLFCGMGNFTLPLAT----QAASVVGVEGVPALVEKGQQNARLNG-LQNVTFYHENLEEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             CEEEEESCTTTTTHHHHHT----TSSEEEEEESCHHHHHHHHHHHHHTT-CCSEEEEECCTTSCCSSSGGGTTCCSEEEE
T ss_pred             ceEEEecccccccchhccc----cccEEEeccCcHHHHHHHHHhHHhcc-cccceeeecchhhhhhhhhhhhccCceEEe
Confidence            4555 78999999988754    56899999887765444433222111 157899999887643 33333346898872


Q ss_pred             ecccCCCCCCCccchhhhhhhHHHHHHHHHHHhCCCccEEEEecC
Q 040253           84 LATPMDFESKDPENEVIRPTINGMVSIMRACKNAKTVRRLVFTSS  128 (338)
Q Consensus        84 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~v~~Ss  128 (338)
                                +|+..=       ...+++.+.+.+ .+++||+|.
T Consensus       289 ----------DPPR~G-------~~~~~~~l~~~~-~~~ivYVSC  315 (358)
T d1uwva2         289 ----------DPARAG-------AAGVMQQIIKLE-PIRIVYVSC  315 (358)
T ss_dssp             ----------CCCTTC-------CHHHHHHHHHHC-CSEEEEEES
T ss_pred             ----------CCCCcc-------HHHHHHHHHHcC-CCEEEEEeC
Confidence                      222111       112344444445 689999995

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.15  Score=34.97  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=33.1

Q ss_pred             CCCcEEEEeCCc----------hhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            3 SIAETVCVTGAS----------GFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         3 ~~~~~ilVtGat----------G~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      +..++|||+|+.          -|.+.+.++.|.+.|++++.+.-+|+.
T Consensus         2 t~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           2 TDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            457899999973          378999999999999999998877764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.01  E-value=0.97  Score=33.06  Aligned_cols=32  Identities=16%  Similarity=0.322  Sum_probs=26.4

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVR   37 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r   37 (338)
                      |++|.|-| -|-||+.+++.|.+++ .+|.++..
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence            67999997 8999999999998876 46666654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.86  E-value=0.087  Score=39.88  Aligned_cols=33  Identities=21%  Similarity=0.120  Sum_probs=27.9

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDP   39 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~   39 (338)
                      |||+|.| +|++|..++..|.+.  +.+|+++.|++
T Consensus         1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6899998 789999999999886  45788888754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=91.69  E-value=0.16  Score=34.80  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=29.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHH---CCCeEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLE---RGYAVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~---~g~~V~~~~r~~~   40 (338)
                      .+++++|.| .|++|-.++..|.+   .|.+|.++.|.+.
T Consensus        17 ~p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          17 APKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             cCCeEEEEC-CChHHHHHHHHhHhhcccccccceeccccc
Confidence            358999998 89999999987654   3789999998653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.65  E-value=0.11  Score=35.63  Aligned_cols=36  Identities=19%  Similarity=0.091  Sum_probs=28.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHC---CCeEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLER---GYAVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~   40 (338)
                      .+++++|.| +|++|-.++..|.+.   |.+|+++.|.+.
T Consensus        19 ~p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          19 PPRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             cCCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            358999998 599999999776654   568999988543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.48  E-value=0.078  Score=39.20  Aligned_cols=34  Identities=21%  Similarity=0.159  Sum_probs=30.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVR   37 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (338)
                      .+|+|+|.|-+.-+|+-|+..|+++|..|+....
T Consensus        28 ~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~   61 (171)
T d1edza1          28 YGKKCIVINRSEIVGRPLAALLANDGATVYSVDV   61 (171)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECS
T ss_pred             CCCEEEEECCccccHHHHHHHHHHCCCEEEEecc
Confidence            4699999999999999999999999999987654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.46  E-value=0.081  Score=41.24  Aligned_cols=33  Identities=24%  Similarity=0.179  Sum_probs=29.3

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .|+|+| +|.-|...+..|.++|++|.++.+++.
T Consensus         7 DviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLG-TGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            378887 999999999999999999999988653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.14  E-value=0.31  Score=39.18  Aligned_cols=33  Identities=24%  Similarity=0.151  Sum_probs=29.6

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVR   37 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (338)
                      ..++|+|-| .|.+|+++++.|.+.|.+|++++-
T Consensus        35 ~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1          35 GDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence            358999998 799999999999999999998864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.08  E-value=0.053  Score=40.56  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=26.5

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVR   37 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (338)
                      ..+|+|+| +|++|-.++..|.+.|.++.++.+
T Consensus         3 ~a~VvIIG-gG~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           3 KAPVVVLG-AGLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             CSSEEEEC-CSHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCCEEEEC-ccHHHHHHHHHHHhcCCceEEEEE
Confidence            45799998 999999999999999876655554

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.07  E-value=0.15  Score=39.01  Aligned_cols=77  Identities=17%  Similarity=0.145  Sum_probs=55.6

Q ss_pred             CcEEEEeC-CchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTG-ASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      +++||=.| |+|..-.++++.. ..| +|++++.++...+.+......   .+++.++.+|..++......+..+|+|+|
T Consensus        57 g~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis~~~i~~a~~~a~~---~~ni~~i~~d~~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          57 DERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYSAKPFEKLLELVRE---RNNIIPLLFDASKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCCHHHHHHHHHHHHH---CSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCCHHHHHHHHHHhhc---cCCceEEEeeccCccccccccceEEEEEe
Confidence            57888555 5688888887764 344 899999887665554443322   26899999999998887777778888887


Q ss_pred             ecc
Q 040253           84 LAT   86 (338)
Q Consensus        84 ~a~   86 (338)
                      ...
T Consensus       132 ~~~  134 (209)
T d1nt2a_         132 DIA  134 (209)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.86  E-value=0.91  Score=33.84  Aligned_cols=84  Identities=18%  Similarity=0.141  Sum_probs=50.0

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCC-----CeEEEEEcCCCcHHHHHHHhcCCCCCC----cEEEEe------------
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERG-----YAVRATVRDPDNKKKVKHLLELPKAST----HLTLWK------------   62 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~------------   62 (338)
                      |++||.|=| =|-||+.+.|++++++     .+|..+.-.....+.+..+.+..+.+.    .++.-.            
T Consensus         1 M~ikigING-FGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i   79 (190)
T d1k3ta1           1 MPIKVGING-FGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLV   79 (190)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEE
T ss_pred             CCeEEEEEC-CChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceE
Confidence            357999998 9999999999998864     245554443345555555554432211    121111            


Q ss_pred             --c-------ccCCCCCchhhhCCccEEEEecccC
Q 040253           63 --A-------DLAEEGNFDEPIRGCTGVFHLATPM   88 (338)
Q Consensus        63 --~-------Dl~d~~~~~~~~~~~d~vi~~a~~~   88 (338)
                        +       .-.|++++...-.++|+|+-|.|..
T Consensus        80 ~~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f  114 (190)
T d1k3ta1          80 VNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLF  114 (190)
T ss_dssp             ETTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSC
T ss_pred             EcCceEEecccCCChhHCCHhhcCCcEEEEecccc
Confidence              0       1234444433334899999999853

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.69  E-value=0.09  Score=42.36  Aligned_cols=34  Identities=24%  Similarity=0.200  Sum_probs=30.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .+|+|.| +|..|..++..|.+.|++|.++.|+++
T Consensus         3 ~~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIG-AGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3799998 789999999999999999999988753

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.43  Score=36.16  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=43.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHH------HHHHhcCCCCCCcEEEEe-cccCCCCCchhhhC--
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKK------VKHLLELPKASTHLTLWK-ADLAEEGNFDEPIR--   76 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~-~Dl~d~~~~~~~~~--   76 (338)
                      |||+|.| ++-.|..+++.|.+.|++|.++.-.+++...      +......    .++.++. .++.+.+. .+.++  
T Consensus         1 Mkiv~~~-~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~----~~i~~~~~~~~~~~~~-~~~i~~~   74 (203)
T d2blna2           1 MKTVVFA-YHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAE----RGIPVYAPDNVNHPLW-VERIAQL   74 (203)
T ss_dssp             CEEEEEE-CHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHH----HTCCEECCSCCCSHHH-HHHHHHT
T ss_pred             CeEEEEe-cCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHH----cCCcceecccccchhh-hhhhhhh
Confidence            6888886 5557999999999999999777643322110      1111000    2344444 34444443 33333  


Q ss_pred             CccEEEEecc
Q 040253           77 GCTGVFHLAT   86 (338)
Q Consensus        77 ~~d~vi~~a~   86 (338)
                      ++|++|....
T Consensus        75 ~~Dlii~~g~   84 (203)
T d2blna2          75 SPDVIFSFYY   84 (203)
T ss_dssp             CCSEEEEESC
T ss_pred             cccceeeeec
Confidence            7898887764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.19  E-value=0.19  Score=39.89  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=30.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPD   40 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~   40 (338)
                      +++|+|+| +|..|..++..|.+.| ++|.++-|++.
T Consensus         1 ~~~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAG-AGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            36899998 8999999999999999 58888888653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=90.18  E-value=0.17  Score=36.77  Aligned_cols=39  Identities=31%  Similarity=0.303  Sum_probs=25.7

Q ss_pred             CCCCCcEEEEeCCchhhHHHH-HHHHHHCC-CeEEEE-EcCCCc
Q 040253            1 MGSIAETVCVTGASGFIGSWL-IMRLLERG-YAVRAT-VRDPDN   41 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l-~~~L~~~g-~~V~~~-~r~~~~   41 (338)
                      |+. ..||.|.| +|.+|+.+ .+.|.... .++.++ +|++..
T Consensus         1 M~k-kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~   42 (157)
T d1nvmb1           1 MNQ-KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAAS   42 (157)
T ss_dssp             CCS-CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTC
T ss_pred             CCC-CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhc
Confidence            553 57999999 99999865 55554443 466665 455543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.17  E-value=0.021  Score=44.78  Aligned_cols=28  Identities=32%  Similarity=0.325  Sum_probs=24.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRA   34 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~   34 (338)
                      |||+|+| +|.+|...+.+|+++|++|.+
T Consensus         1 mkV~VIG-aGi~GlstA~~L~~~G~~v~v   28 (246)
T d1kifa1           1 MRVVVIG-AGVIGLSTALCIHERYHSVLQ   28 (246)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHHTTTSS
T ss_pred             CEEEEEC-chHHHHHHHHHHHHCCCCceE
Confidence            6899998 899999999999999976543

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.31  Score=39.25  Aligned_cols=27  Identities=30%  Similarity=0.289  Sum_probs=24.0

Q ss_pred             CchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253           13 ASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus        13 atG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      .||..|.++++.|+.+|++|+.+.+..
T Consensus        44 SSGk~G~alA~~~~~~Ga~V~li~g~~   70 (290)
T d1p9oa_          44 SSGRRGATSAEAFLAAGYGVLFLYRAR   70 (290)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CchHHHHHHHHHHHHcCCEEEEEecCC
Confidence            379999999999999999999997643

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.03  E-value=0.14  Score=40.94  Aligned_cols=32  Identities=22%  Similarity=0.162  Sum_probs=28.8

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      -|+|+| +|..|..++.+|.++|++|.++.+..
T Consensus         5 DvvIIG-aGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVG-AGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            488887 89999999999999999999998753

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.95  E-value=0.071  Score=39.18  Aligned_cols=75  Identities=16%  Similarity=0.122  Sum_probs=43.4

Q ss_pred             cEEEEeCCchhhHHHHHH-HHHHC-----CCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCcc
Q 040253            6 ETVCVTGASGFIGSWLIM-RLLER-----GYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCT   79 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~-~L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d   79 (338)
                      |||.|+|| |.+|...+- .|+..     ..++..++.++++......+...... .......     ..+..+.++++|
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~-~~~~~~~-----t~~~~~~l~~aD   73 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK-DRFKVLI-----SDTFEGAVVDAK   73 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT-TSSEEEE-----CSSHHHHHTTCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc-cCceEEE-----ecCcccccCCCC
Confidence            68999997 546655553 33321     35899999877665443332211000 1112211     233457889999


Q ss_pred             EEEEeccc
Q 040253           80 GVFHLATP   87 (338)
Q Consensus        80 ~vi~~a~~   87 (338)
                      +||..|+.
T Consensus        74 vVVita~~   81 (162)
T d1up7a1          74 YVIFQFRP   81 (162)
T ss_dssp             EEEECCCT
T ss_pred             EEEEeccc
Confidence            99999985

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.87  E-value=0.41  Score=37.05  Aligned_cols=79  Identities=13%  Similarity=0.098  Sum_probs=57.8

Q ss_pred             CCcEEEEeC-CchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTG-ASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+++||=.| |+|..-+++++.. ..+-+|++++.++.....+......   .+++..+..|..+++.+......+|+|+
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~V-G~~G~V~aVD~s~~~l~~a~~~a~~---~~~~~~i~~d~~~~~~~~~~~~~vD~i~  148 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIV-GWEGKIFGIEFSPRVLRELVPIVEE---RRNIVPILGDATKPEEYRALVPKVDVIF  148 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHSS---CTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCEEEEeccCCCHHHHHHHHHh-CCCCEEEEEeCcHHHHHHHHHHHHh---cCCceEEEEECCCcccccccccceEEEE
Confidence            367888555 6699999998865 2335799999987766555544332   2678999999999888777777889888


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      +...
T Consensus       149 ~d~~  152 (227)
T d1g8aa_         149 EDVA  152 (227)
T ss_dssp             ECCC
T ss_pred             EEcc
Confidence            7544

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=89.85  E-value=1.8  Score=31.46  Aligned_cols=81  Identities=14%  Similarity=0.075  Sum_probs=50.7

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCC----CcEEEE------------ecccCCCCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKAS----THLTLW------------KADLAEEGN   70 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~------------~~Dl~d~~~   70 (338)
                      ||.|-| =|-||+.+.+++++.+.+|..+.-...+.+.+..+.+..+.+    ..++.-            ...-.+++.
T Consensus         2 kIgING-fGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGING-FGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEEC-CcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            677876 899999999999999888877665444555555655543322    112111            111124444


Q ss_pred             chhhhCCccEEEEecccC
Q 040253           71 FDEPIRGCTGVFHLATPM   88 (338)
Q Consensus        71 ~~~~~~~~d~vi~~a~~~   88 (338)
                      +...-.++|+|+-|.|..
T Consensus        81 i~W~~~gvD~ViEcTG~f   98 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVF   98 (169)
T ss_dssp             CCHHHHTCCEEEECSSSC
T ss_pred             CCccccCCCEEEecCceE
Confidence            433334899999999863

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=89.55  E-value=0.14  Score=41.44  Aligned_cols=32  Identities=25%  Similarity=0.602  Sum_probs=28.4

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP   39 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (338)
                      +|+|+| +|.+|..++.+|.++|. +|.++.|+.
T Consensus         3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            689998 89999999999999996 699998864

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.12  E-value=0.72  Score=35.62  Aligned_cols=78  Identities=9%  Similarity=0.057  Sum_probs=54.9

Q ss_pred             CCcEEEEeC-CchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTG-ASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+++||=.| |+|+.-+++++.. . +-.|++++.++.-...+.....   ..+++..+.+|..++..+......+|+++
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~~-~-~g~V~aVDiS~~~i~~a~~~a~---~~~ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADIA-D-KGIVYAIEYAPRIMRELLDACA---ERENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHT-T-TSEEEEEESCHHHHHHHHHHTT---TCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             CCCEEEEeCEEcCHHHHHHHHhC-C-CCEEEEEeCcHHHHHHHHHHHh---hhcccceEEEeeccCcccccccceeEEee
Confidence            367899666 5699999999852 3 3489999998766555544322   23688999999998887766555666666


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      +...
T Consensus       149 ~~~~  152 (230)
T d1g8sa_         149 EDVA  152 (230)
T ss_dssp             ECCC
T ss_pred             cccc
Confidence            5443

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.03  E-value=0.35  Score=33.48  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=32.8

Q ss_pred             CCcEEEEeCC----------chhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            4 IAETVCVTGA----------SGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         4 ~~~~ilVtGa----------tG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      ..++|||+|+          --|.+.+.+++|.+.|++++.+.-+++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            4589999998          4478999999999999999999888765

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.24  Score=40.45  Aligned_cols=35  Identities=23%  Similarity=0.171  Sum_probs=30.3

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      ...||+|+| +|.-|...+..|.++|++|.++-++.
T Consensus         4 ~~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            346799998 89999999999999999999986543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.81  E-value=0.24  Score=34.97  Aligned_cols=34  Identities=26%  Similarity=0.397  Sum_probs=28.0

Q ss_pred             CcEEEEeCCchhhHHHHHHHHH----HCCCeEEEEEcCC
Q 040253            5 AETVCVTGASGFIGSWLIMRLL----ERGYAVRATVRDP   39 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~----~~g~~V~~~~r~~   39 (338)
                      .++|+|.| +||+|-.++..|.    +.|.+|+.+.+++
T Consensus        37 ~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            46899997 7999999998885    3588999988754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.72  E-value=0.2  Score=36.41  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=26.2

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      ||+|.| +|++|-.++..|. ++.+|+++.|.+
T Consensus         2 rVvIIG-gG~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVG-NGPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             EEEEEC-CSHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             eEEEEC-CcHHHHHHHHHHH-cCCCEEEEeccc
Confidence            789998 8999999999985 478999988743

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.13  E-value=0.94  Score=35.16  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=27.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHH-CCCeEEEEEc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLE-RGYAVRATVR   37 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~-~g~~V~~~~r   37 (338)
                      ..++|+|-| -|.+|+++++.|.+ .|.+|+++.-
T Consensus        31 ~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1          31 KGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccc
Confidence            468999997 79999999999976 5888887764

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.11  E-value=0.3  Score=36.31  Aligned_cols=68  Identities=10%  Similarity=0.162  Sum_probs=41.1

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC-CCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccEE
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER-GYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTGV   81 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~v   81 (338)
                      .||.|+| +|.+|+..++.|... +.+|.++ +++++...........+   +...+       .+++.++++  ++|+|
T Consensus         2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~ll~~~~iD~v   70 (184)
T d1ydwa1           2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP---ESTKI-------HGSYESLLEDPEIDAL   70 (184)
T ss_dssp             EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC---TTCEE-------ESSHHHHHHCTTCCEE
T ss_pred             eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccc---cceee-------cCcHHHhhhcccccee
Confidence            5899998 689999999999776 5677755 45544444333322211   11111       244566663  68988


Q ss_pred             EEe
Q 040253           82 FHL   84 (338)
Q Consensus        82 i~~   84 (338)
                      +-+
T Consensus        71 ~I~   73 (184)
T d1ydwa1          71 YVP   73 (184)
T ss_dssp             EEC
T ss_pred             eec
Confidence            844

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.04  E-value=0.88  Score=35.20  Aligned_cols=33  Identities=30%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHH-HCCCeEEEEEc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLL-ERGYAVRATVR   37 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~r   37 (338)
                      ..++|.|-| .|-+|+++++.|. +.|.+|++++-
T Consensus        30 ~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          30 KKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence            468999997 9999999999996 46999888763

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=87.57  E-value=1.3  Score=35.13  Aligned_cols=77  Identities=10%  Similarity=0.089  Sum_probs=47.7

Q ss_pred             CCcEEEEeC-CchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            4 IAETVCVTG-ASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         4 ~~~~ilVtG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ..++||=+| |+|.+...++++.   |.+|++++-++...+..+.......-.++++++.+|..+... .  -..+|+|+
T Consensus        67 ~~~~vLDiGcG~G~~~~~la~~~---~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~-~--~~sfD~V~  140 (282)
T d2o57a1          67 RQAKGLDLGAGYGGAARFLVRKF---GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC-E--DNSYDFIW  140 (282)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH---CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS-C--TTCEEEEE
T ss_pred             CCCEEEEeCCCCcHHHhhhhccC---CcEEEEEeccchhhhhhhcccccccccccccccccccccccc-c--ccccchhh
Confidence            357899665 4677666665543   789999998765544333322211112579999999877531 1  13589998


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      ....
T Consensus       141 ~~~~  144 (282)
T d2o57a1         141 SQDA  144 (282)
T ss_dssp             EESC
T ss_pred             ccch
Confidence            6654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=87.31  E-value=0.38  Score=37.59  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=29.8

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVR   37 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (338)
                      ..++|+|-| -|.+|+++++.|.+.|.+|++++-
T Consensus        30 ~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          30 EGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence            468999997 999999999999999999988774

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=87.26  E-value=0.8  Score=37.30  Aligned_cols=78  Identities=12%  Similarity=-0.016  Sum_probs=50.4

Q ss_pred             CcEEE-EeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC-CchhhhCCccEEE
Q 040253            5 AETVC-VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG-NFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~il-VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~d~vi   82 (338)
                      +++|| +..|+|..+.+++    ..+.+|++++.++...+..+.......- .+++++.+|..+.. .+...-+..|.|+
T Consensus       146 g~rVLDl~~gtG~~s~~~a----~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi  220 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLA----LGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVV  220 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHH----HHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeeeccCCCCcHHHHHHH----hcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEE
Confidence            56777 6667787776554    3467899999988776665544332221 46899999886632 2333334789999


Q ss_pred             Eeccc
Q 040253           83 HLATP   87 (338)
Q Consensus        83 ~~a~~   87 (338)
                      .-...
T Consensus       221 ~DpP~  225 (318)
T d1wxxa2         221 LDPPA  225 (318)
T ss_dssp             ECCCC
T ss_pred             EcCCc
Confidence            76543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=87.19  E-value=0.63  Score=33.79  Aligned_cols=41  Identities=15%  Similarity=0.159  Sum_probs=26.8

Q ss_pred             cEEEEeCCchhhHHH-HHHHHHHC-CCeEEEEEcCCCcHHHHHH
Q 040253            6 ETVCVTGASGFIGSW-LIMRLLER-GYAVRATVRDPDNKKKVKH   47 (338)
Q Consensus         6 ~~ilVtGatG~iG~~-l~~~L~~~-g~~V~~~~r~~~~~~~~~~   47 (338)
                      +||.|+| +|.+|+. .+..|... +.++.+.+++++.......
T Consensus         2 irvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~   44 (167)
T d1xeaa1           2 LKIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLAT   44 (167)
T ss_dssp             EEEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHH
T ss_pred             eEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            6899998 6778865 45566555 4577666666555555443

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=87.19  E-value=0.83  Score=32.99  Aligned_cols=65  Identities=12%  Similarity=0.162  Sum_probs=40.0

Q ss_pred             cEEEEeCCchhhHHH-HHHHHHHC-CCeEEEEE-cCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            6 ETVCVTGASGFIGSW-LIMRLLER-GYAVRATV-RDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         6 ~~ilVtGatG~iG~~-l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      ++|.|+| +|.+|.. .+..|... +.++.++. ++++..........       +     +.  .+.+..+++++|+|+
T Consensus         2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-------~-----~~--~~~~~~l~~~~D~V~   66 (164)
T d1tlta1           2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-------I-----PY--ADSLSSLAASCDAVF   66 (164)
T ss_dssp             EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-------C-----CB--CSSHHHHHTTCSEEE
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-------c-----cc--cccchhhhhhccccc
Confidence            6899998 6999975 46666554 56766554 66666555433221       1     11  334556667899987


Q ss_pred             Eec
Q 040253           83 HLA   85 (338)
Q Consensus        83 ~~a   85 (338)
                      -+.
T Consensus        67 I~t   69 (164)
T d1tlta1          67 VHS   69 (164)
T ss_dssp             ECS
T ss_pred             ccc
Confidence            543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=87.11  E-value=0.27  Score=38.39  Aligned_cols=32  Identities=28%  Similarity=0.285  Sum_probs=28.3

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCC-eEEEEEcCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGY-AVRATVRDP   39 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   39 (338)
                      +|+|+| +|.-|...+..|.++|+ +|+++-+++
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            689998 89999999999999996 699998754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.03  E-value=0.31  Score=39.50  Aligned_cols=35  Identities=34%  Similarity=0.465  Sum_probs=31.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      -.|+|+| +|+.|..++.+|.++|.+|.++.+++.-
T Consensus         8 ~dV~IIG-AG~sGl~~a~~L~~~G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           8 VDVLVVG-AGFSGLYALYRLRELGRSVHVIETAGDV   42 (298)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEEC-ccHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence            4699998 8999999999999999999999887653

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=86.81  E-value=0.38  Score=37.92  Aligned_cols=33  Identities=21%  Similarity=0.205  Sum_probs=29.7

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVR   37 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (338)
                      ..++|.|-| .|-+|+++++.|.+.|.+|++++-
T Consensus        35 ~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          35 VGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             TTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence            568999998 899999999999999999988763

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=86.68  E-value=0.34  Score=40.26  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=28.6

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      -|+|+| +|+-|..++.+|.++|++|.++-+..
T Consensus         4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            378887 99999999999999999999998853

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.68  E-value=0.61  Score=35.26  Aligned_cols=31  Identities=19%  Similarity=0.298  Sum_probs=27.0

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVR   37 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (338)
                      |||++.| ++..|..+++.|.+.|++|.++.-
T Consensus         1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t   31 (203)
T d2bw0a2           1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFT   31 (203)
T ss_dssp             CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEc
Confidence            6899997 778899999999999999987764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.48  E-value=0.42  Score=39.05  Aligned_cols=31  Identities=26%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             EEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            8 VCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         8 ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      |+|+| +|.-|...+.+|.++|++|.++-++.
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEEC-CCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            78887 89999999999999999999998754

>d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Leuconostoc mesenteroides [TaxId: 1245]

Probab=85.24  E-value=1.8  Score=32.23  Aligned_cols=87  Identities=15%  Similarity=0.267  Sum_probs=53.7

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHH-HHH---HC-----CCeEEEEEcCCCcHHHHHHHhc----CCC--------CCCcEE
Q 040253            1 MGSIAETVCVTGASGFIGSWLIM-RLL---ER-----GYAVRATVRDPDNKKKVKHLLE----LPK--------ASTHLT   59 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~-~L~---~~-----g~~V~~~~r~~~~~~~~~~~~~----~~~--------~~~~~~   59 (338)
                      |+.....++|.||||=+...-+- .|.   ..     +..|+++.|+..+.+.+.....    ...        -..++.
T Consensus         1 ~~e~~t~lVIFGaTGDLa~RKL~PAL~~L~~~g~lp~~~~Iig~aR~~~~~e~f~~~v~~~l~~~~~~~~~~~~~~~~~~   80 (195)
T d1h9aa1           1 VSEIKTLVTFFGGTGDLAKRKLYPSVFNLYKKGYLQKHFAIVGTARQALNDDEFKQLVRDSIKDFTDDQAQAEAFIEHFS   80 (195)
T ss_dssp             CCCCCEEEEEETTTSHHHHHTHHHHHHHHHHTTSSCSSEEEEEEESSCCCHHHHHHHHHHHHGGGCSCHHHHHHHHTTEE
T ss_pred             CCCCceEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCCEEEEEECCcCcHHHHHHHHHHHHhhccchHhhHHHHhhccc
Confidence            55544455688999988775432 332   22     3679999998766555432211    000        015789


Q ss_pred             EEecccCCCCCchhhhC-----------CccEEEEeccc
Q 040253           60 LWKADLAEEGNFDEPIR-----------GCTGVFHLATP   87 (338)
Q Consensus        60 ~~~~Dl~d~~~~~~~~~-----------~~d~vi~~a~~   87 (338)
                      ++.+|+.+++++.++.+           ....++++|-+
T Consensus        81 y~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~rifYLAvp  119 (195)
T d1h9aa1          81 YRAHDVTDAASYAVLKEAIEEAADKFDIDGNRIFYMSVA  119 (195)
T ss_dssp             EEECCTTCTTTHHHHHHHHHHHHHHHTCCSCEEEEECSC
T ss_pred             eeeEeeccHhhHHHHHHHHHHHHhhcCCCcceEEEEecC
Confidence            99999999887765432           23478888853

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=0.39  Score=37.58  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=27.1

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCC-eEEEEEc
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGY-AVRATVR   37 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (338)
                      ..+|+|.| .|-+|++++..|...|- ++++++.
T Consensus        30 ~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          30 DSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             CCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC
Confidence            36899998 77799999999999995 7777764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.01  E-value=0.68  Score=35.58  Aligned_cols=79  Identities=11%  Similarity=0.052  Sum_probs=46.9

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCC----------------CCCCcEEEEecccCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELP----------------KASTHLTLWKADLAE   67 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Dl~d   67 (338)
                      .+.+||..|+ |- | ..+..|+++|++|++++-++...+..+......                ....+++++.+|+.+
T Consensus        45 ~~~rvLd~GC-G~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          45 SGLRVFFPLC-GK-A-VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CSCEEEETTC-TT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCEEEEeCC-CC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            3578999883 33 3 345566778999999988876554433322110                112467888888755


Q ss_pred             CCCchhhhCCccEEEEeccc
Q 040253           68 EGNFDEPIRGCTGVFHLATP   87 (338)
Q Consensus        68 ~~~~~~~~~~~d~vi~~a~~   87 (338)
                      ...  ......|+|+..+..
T Consensus       122 l~~--~~~~~fd~i~~~~~l  139 (229)
T d2bzga1         122 LPR--TNIGKFDMIWDRGAL  139 (229)
T ss_dssp             GGG--SCCCCEEEEEESSST
T ss_pred             ccc--cccCceeEEEEEEEE
Confidence            431  111246777766654

>d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose 6-phosphate dehydrogenase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.82  E-value=1.2  Score=33.56  Aligned_cols=83  Identities=13%  Similarity=0.149  Sum_probs=53.5

Q ss_pred             CcEEEEeCCchhhHHHHH-HHH---HHC-----CCeEEEEEcCCCcHHHHHHHhcC--CCC----------CCcEEEEec
Q 040253            5 AETVCVTGASGFIGSWLI-MRL---LER-----GYAVRATVRDPDNKKKVKHLLEL--PKA----------STHLTLWKA   63 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~-~~L---~~~-----g~~V~~~~r~~~~~~~~~~~~~~--~~~----------~~~~~~~~~   63 (338)
                      ..+++|.||||=+...-+ ..|   ...     +.+|+++.|++-+.+..+.....  ...          ..++.++.+
T Consensus        20 ~~t~VIFGatGDLA~RKL~PALf~L~~~g~Lp~~~~Iig~aR~~~s~e~fr~~~~~~~~~~~~~~~~~~~f~~~~~Y~~~   99 (203)
T d1qkia1          20 THIFIIMGASGDLAKKKIYPTIWWLFRDGLLPENTFIVGYARSRLTVADIRKQSEPFFKATPEEKLKLEDFFARNSYVAG   99 (203)
T ss_dssp             CEEEEEETTTSHHHHHTHHHHHHHHHHTTCSCSSEEEEEEBSSCCSCHHHHHHHSCCTTCCGGGHHHHHHHHTTEECCBC
T ss_pred             CcEEEEECcccHHHHhHHHHHHHHHHHcCCCCCCcEEEEEECCCCCHHHHHHHHHHHHhhchhhHHHHHHHHHhhccccC
Confidence            457999999998876543 233   233     46899999977654444332221  100          147899999


Q ss_pred             ccCCCCCchhhhC---------CccEEEEeccc
Q 040253           64 DLAEEGNFDEPIR---------GCTGVFHLATP   87 (338)
Q Consensus        64 Dl~d~~~~~~~~~---------~~d~vi~~a~~   87 (338)
                      |++|++++.++-+         ....|+++|-+
T Consensus       100 d~~~~~~~~~L~~~l~~~~~~~~~~rifYLAvp  132 (203)
T d1qkia1         100 QYDDAASYQRLNSHMNALHLGSQANRLFYLALP  132 (203)
T ss_dssp             CTTCHHHHHHHHHHHHHTTTTTTSEEEEEECSC
T ss_pred             cCCChhhHHHHHHHHHHHhcCCCcceEEEEecC
Confidence            9999887766421         34578888863

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=84.77  E-value=5.3  Score=28.67  Aligned_cols=82  Identities=13%  Similarity=0.069  Sum_probs=50.4

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCC----cEEEEe------------cccCCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKAST----HLTLWK------------ADLAEE   68 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~------------~Dl~d~   68 (338)
                      +||.|-| =|-||+.+.|.+.++. .+|.++.- ....+.+..+.+..+.+.    .++.-.            ..-.++
T Consensus         2 ikigING-FGRIGR~v~R~~~~~~~i~ivaINd-~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p   79 (166)
T d1gado1           2 IKVGING-FGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (166)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCSSEEEEEEEC-SSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             eEEEEEC-CcHHHHHHHHHHhhCCCeEEEEEeC-CCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh
Confidence            5888887 8999999999999885 56666654 455666666665433221    122110            111234


Q ss_pred             CCchhhhCCccEEEEecccCC
Q 040253           69 GNFDEPIRGCTGVFHLATPMD   89 (338)
Q Consensus        69 ~~~~~~~~~~d~vi~~a~~~~   89 (338)
                      +.+...-.++|+|+-|.|...
T Consensus        80 ~~i~W~~~gvDiViEcTG~f~  100 (166)
T d1gado1          80 ANLKWDEVGVDVVAEATGLFL  100 (166)
T ss_dssp             GGGCHHHHTCSEEEECSSSCC
T ss_pred             HHCCccccCCCEEEEcccccc
Confidence            443333348999999998633

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=84.70  E-value=0.77  Score=34.72  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=28.4

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      ..|||+++| ++..+..+++.|.+.|++|.++.-.+
T Consensus         2 ~~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~   36 (206)
T d1fmta2           2 ESLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQP   36 (206)
T ss_dssp             CCCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            457899997 67889999999999999988776443

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.54  E-value=0.48  Score=33.94  Aligned_cols=74  Identities=19%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             CCcEEE-EeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVC-VTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~il-VtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      .+++|| +..|||.+|-..    +.+| .+|+++..++...+..+..........+++++++|..+.  +.....+.|+|
T Consensus        14 ~g~~vlDl~~GtG~~~iea----~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~--l~~~~~~fDiI   87 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEA----VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA--IDCLTGRFDLV   87 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHH----HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH--HHHBCSCEEEE
T ss_pred             CCCeEEEcCCccCHHHHHH----HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc--cccccccccee
Confidence            356777 777889888753    3456 489999888776655544444333336799999987542  23334578988


Q ss_pred             EE
Q 040253           82 FH   83 (338)
Q Consensus        82 i~   83 (338)
                      +-
T Consensus        88 f~   89 (152)
T d2esra1          88 FL   89 (152)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=83.39  E-value=0.88  Score=36.92  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=23.2

Q ss_pred             cEEEEeC-Cch-hh--HHHHHHHHHHCCCeEEEEEcCC
Q 040253            6 ETVCVTG-ASG-FI--GSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         6 ~~ilVtG-atG-~i--G~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      |||+|++ ||| -+  ..+|+++|.++||+|..++...
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~~   38 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTAD   38 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            5778766 443 22  2247789989999999887543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=83.35  E-value=0.81  Score=35.04  Aligned_cols=70  Identities=13%  Similarity=0.137  Sum_probs=39.4

Q ss_pred             cEEEEeCCchhhHH-HHHHHHHHC-CCeEEEE-EcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhC--CccE
Q 040253            6 ETVCVTGASGFIGS-WLIMRLLER-GYAVRAT-VRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIR--GCTG   80 (338)
Q Consensus         6 ~~ilVtGatG~iG~-~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~   80 (338)
                      -+|.|+| +|.+|+ +++..+... +.+|.++ +|+++...........+.  .+       .....++.++++  ++|+
T Consensus        34 iriaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~--~~-------~~~~~d~~ell~~~~iD~  103 (221)
T d1h6da1          34 FGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDP--RK-------IYDYSNFDKIAKDPKIDA  103 (221)
T ss_dssp             EEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCG--GG-------EECSSSGGGGGGCTTCCE
T ss_pred             EEEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccc--cc-------ccccCchhhhccccccee
Confidence            4799998 689996 566666554 5677754 455555554433322110  01       112344556664  6888


Q ss_pred             EEEec
Q 040253           81 VFHLA   85 (338)
Q Consensus        81 vi~~a   85 (338)
                      |+-+.
T Consensus       104 V~I~t  108 (221)
T d1h6da1         104 VYIIL  108 (221)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            87544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=83.34  E-value=0.57  Score=36.31  Aligned_cols=35  Identities=23%  Similarity=0.138  Sum_probs=30.6

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCc
Q 040253            6 ETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDN   41 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (338)
                      -.|+|+| +|..|...+..|.++|++|.++.+++..
T Consensus         3 yDViIIG-aG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           3 YDVIVIG-GGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            3588998 8999999999999999999999987654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=83.17  E-value=1.8  Score=35.45  Aligned_cols=73  Identities=19%  Similarity=0.262  Sum_probs=52.3

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHH-CC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGASGFIGSWLIMRLLE-RG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~-~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      .+++.|+| +|..+..-++.+.. .+ .+|.+.+|++++..+........   .++++..+     ++++++++++|+|+
T Consensus       128 a~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~---~g~~v~~~-----~s~~eav~~ADIi~  198 (340)
T d1x7da_         128 ARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY---SGLTIRRA-----SSVAEAVKGVDIIT  198 (340)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC---TTCEEEEC-----SSHHHHHTTCSEEE
T ss_pred             CceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc---cCCCceec-----CCHHHHHhcCCcee
Confidence            47889998 89999988887765 35 68999999987766654433211   34555443     45778999999998


Q ss_pred             Eecc
Q 040253           83 HLAT   86 (338)
Q Consensus        83 ~~a~   86 (338)
                      -+-+
T Consensus       199 t~Ta  202 (340)
T d1x7da_         199 TVTA  202 (340)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            7654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=83.06  E-value=1.9  Score=32.71  Aligned_cols=75  Identities=15%  Similarity=0.026  Sum_probs=45.2

Q ss_pred             CcEEEEeCC-chhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEE
Q 040253            5 AETVCVTGA-SGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFH   83 (338)
Q Consensus         5 ~~~ilVtGa-tG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   83 (338)
                      .++||=+|+ +|..-    ..|++.|.+|++++-++.-....+..... ...++++++.+|..+.. +.  -...|+|+.
T Consensus        16 ~~rVLDiGcG~G~~~----~~l~~~~~~v~gvD~s~~~i~~A~~~~~~-~~~~~i~~~~~d~~~l~-~~--~~~fD~v~~   87 (231)
T d1vl5a_          16 NEEVLDVATGGGHVA----NAFAPFVKKVVAFDLTEDILKVARAFIEG-NGHQQVEYVQGDAEQMP-FT--DERFHIVTC   87 (231)
T ss_dssp             CCEEEEETCTTCHHH----HHHGGGSSEEEEEESCHHHHHHHHHHHHH-TTCCSEEEEECCC-CCC-SC--TTCEEEEEE
T ss_pred             cCEEEEecccCcHHH----HHHHHhCCEEEEEECCHHHHhhhhhcccc-ccccccccccccccccc-cc--ccccccccc
Confidence            578996663 44333    44556789999998876544333222111 11268999999987653 11  135799987


Q ss_pred             eccc
Q 040253           84 LATP   87 (338)
Q Consensus        84 ~a~~   87 (338)
                      ..+.
T Consensus        88 ~~~l   91 (231)
T d1vl5a_          88 RIAA   91 (231)
T ss_dssp             ESCG
T ss_pred             cccc
Confidence            7654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=83.00  E-value=0.73  Score=37.65  Aligned_cols=78  Identities=14%  Similarity=0.039  Sum_probs=48.6

Q ss_pred             CcEEE-EeCCchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCC-CchhhhCCccEE
Q 040253            5 AETVC-VTGASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEG-NFDEPIRGCTGV   81 (338)
Q Consensus         5 ~~~il-VtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~-~~~~~~~~~d~v   81 (338)
                      +++|| +..|+|..+.+++    ..| .+|++++.++...+..+.......-..+++++.+|..+.- .+...-...|+|
T Consensus       146 g~~VLDl~~g~G~~si~~a----~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         146 GDRVLDVFTYTGGFAIHAA----IAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             TCEEEETTCTTTHHHHHHH----HTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeeecccCcccchhhhhh----hcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            56777 4556677776654    345 4899999988776655544333322257899999885421 122222468999


Q ss_pred             EEecc
Q 040253           82 FHLAT   86 (338)
Q Consensus        82 i~~a~   86 (338)
                      |.-..
T Consensus       222 i~DpP  226 (324)
T d2as0a2         222 VLDPP  226 (324)
T ss_dssp             EECCC
T ss_pred             hcCCc
Confidence            96654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.61  E-value=0.66  Score=35.51  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=29.3

Q ss_pred             cEEEEeCCchhhHHHHHHHHHHC--CCeEEEEEcCCC
Q 040253            6 ETVCVTGASGFIGSWLIMRLLER--GYAVRATVRDPD   40 (338)
Q Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~   40 (338)
                      .+|+|+| +|--|...+.+|.++  |++|+++.+.+.
T Consensus         2 ~kv~iIG-aGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVG-SGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            4899998 899999999999765  789999988654

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=82.44  E-value=0.68  Score=38.99  Aligned_cols=33  Identities=15%  Similarity=-0.027  Sum_probs=25.0

Q ss_pred             cEEEEe---------CCchhhHHHHHHHHHHCCCeEEEEEcC
Q 040253            6 ETVCVT---------GASGFIGSWLIMRLLERGYAVRATVRD   38 (338)
Q Consensus         6 ~~ilVt---------GatG~iG~~l~~~L~~~g~~V~~~~r~   38 (338)
                      ||||++         ||.|-.-.+|++.|.++||+|.++...
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp~   42 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPS   42 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            577774         455555577899999999999998743

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=81.66  E-value=0.54  Score=31.39  Aligned_cols=36  Identities=17%  Similarity=0.019  Sum_probs=29.2

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCC
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPD   40 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   40 (338)
                      .+|+|+|.| +|.-|.-++..|.....+++...|+..
T Consensus        31 ~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          31 VGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            368999998 789999999999888777766666543

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.49  E-value=0.73  Score=34.99  Aligned_cols=35  Identities=14%  Similarity=0.029  Sum_probs=27.9

Q ss_pred             CCCcEEEEeCCchhhHHHHHHHHHHCCC--eEEEEEcC
Q 040253            3 SIAETVCVTGASGFIGSWLIMRLLERGY--AVRATVRD   38 (338)
Q Consensus         3 ~~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~   38 (338)
                      +...+++|.| +|+.|-.++..|.+.|+  +|+++++.
T Consensus         2 p~~~~~vIvG-~G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           2 PSHVPFLLIG-GGTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             CSEEEEEEES-CSHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCCCCEEEEC-CcHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            3446778887 69999999999988875  58888764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.23  E-value=2.3  Score=31.41  Aligned_cols=74  Identities=16%  Similarity=0.124  Sum_probs=45.8

Q ss_pred             CcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            5 AETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      +.+||=+|+ | .|. .+..|+++|++|++++.++...+..+...... .-+++++...|+.+...    -...|+|+..
T Consensus        31 ~grvLDiGc-G-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~~d~~~~~~----~~~fD~I~~~  102 (198)
T d2i6ga1          31 PGRTLDLGC-G-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAE-GLDNLQTDLVDLNTLTF----DGEYDFILST  102 (198)
T ss_dssp             SCEEEEETC-T-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCTTEEEEECCTTTCCC----CCCEEEEEEE
T ss_pred             CCcEEEECC-C-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhc-cccchhhhheecccccc----cccccEEEEe
Confidence            358887763 3 344 33466678999999998876655544333221 11467888888766442    1357988865


Q ss_pred             cc
Q 040253           85 AT   86 (338)
Q Consensus        85 a~   86 (338)
                      ..
T Consensus       103 ~~  104 (198)
T d2i6ga1         103 VV  104 (198)
T ss_dssp             SC
T ss_pred             ee
Confidence            54

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.22  E-value=10  Score=30.16  Aligned_cols=72  Identities=14%  Similarity=0.129  Sum_probs=43.4

Q ss_pred             CcEEEEeCC-chhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEE
Q 040253            5 AETVCVTGA-SGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVF   82 (338)
Q Consensus         5 ~~~ilVtGa-tG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   82 (338)
                      +++||-.|+ +|.++.    .+++.| .+|++++.++.. ..............+++++.+|+.+.+.   -...+|+|+
T Consensus        34 ~~~VLDiGcG~G~ls~----~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~---~~~~~D~iv  105 (316)
T d1oria_          34 DKVVLDVGSGTGILCM----FAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVEL---PVEKVDIII  105 (316)
T ss_dssp             TCEEEEETCTTSHHHH----HHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---SSSCEEEEE
T ss_pred             cCEEEEEecCCcHHHH----HHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHccc---ccceeEEEe
Confidence            578887763 455543    344556 579999977543 3322222222223679999999877542   123678887


Q ss_pred             Ee
Q 040253           83 HL   84 (338)
Q Consensus        83 ~~   84 (338)
                      ..
T Consensus       106 s~  107 (316)
T d1oria_         106 SE  107 (316)
T ss_dssp             EC
T ss_pred             ee
Confidence            64

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=81.01  E-value=2.7  Score=33.08  Aligned_cols=78  Identities=19%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             cEEE-EeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEEEEe
Q 040253            6 ETVC-VTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGVFHL   84 (338)
Q Consensus         6 ~~il-VtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   84 (338)
                      .+++ +.||+|-||..+++   ..+.+|++++.++....-.+.-........++.++.+|+.++  +.....++|+||.+
T Consensus       112 ~~vld~g~GsG~i~~~la~---~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~--~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         112 KTVADIGTGSGAIGVSVAK---FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP--FKEKFASIEMILSN  186 (271)
T ss_dssp             CEEEEESCTTSHHHHHHHH---HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG--GGGGTTTCCEEEEC
T ss_pred             cEEEEeeeeeehhhhhhhh---cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc--cccccCcccEEEEc
Confidence            3455 66677778777653   356789999988766444433222222224677888888654  22334578999977


Q ss_pred             cccC
Q 040253           85 ATPM   88 (338)
Q Consensus        85 a~~~   88 (338)
                      -..+
T Consensus       187 PPYI  190 (271)
T d1nv8a_         187 PPYV  190 (271)
T ss_dssp             CCCB
T ss_pred             cccc
Confidence            6544

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=80.73  E-value=6.6  Score=30.04  Aligned_cols=77  Identities=9%  Similarity=-0.108  Sum_probs=45.9

Q ss_pred             CCcEEEEeC-CchhhHHHHHHHHHHCC-CeEEEEEcCCCcHHHHHHHhcCCCCCCcEEEEecccCCCCCchhhhCCccEE
Q 040253            4 IAETVCVTG-ASGFIGSWLIMRLLERG-YAVRATVRDPDNKKKVKHLLELPKASTHLTLWKADLAEEGNFDEPIRGCTGV   81 (338)
Q Consensus         4 ~~~~ilVtG-atG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   81 (338)
                      ..++||=.| |+|.   .+. .|.+.| .+|++++.++...+..+.-........++.++.+|.......  .-+..|+|
T Consensus        24 ~~~~VLDlGCG~G~---~~~-~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~--~~~~fD~V   97 (252)
T d1ri5a_          24 RGDSVLDLGCGKGG---DLL-KYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD--LGKEFDVI   97 (252)
T ss_dssp             TTCEEEEETCTTTT---THH-HHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC--CSSCEEEE
T ss_pred             CcCEEEEecccCcH---HHH-HHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc--ccccceEE
Confidence            457898666 3343   333 444555 479999998776555443322222235799999998544321  12358998


Q ss_pred             EEecc
Q 040253           82 FHLAT   86 (338)
Q Consensus        82 i~~a~   86 (338)
                      +...+
T Consensus        98 ~~~~~  102 (252)
T d1ri5a_          98 SSQFS  102 (252)
T ss_dssp             EEESC
T ss_pred             EEcce
Confidence            87654

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.65  E-value=2.2  Score=30.58  Aligned_cols=43  Identities=14%  Similarity=0.201  Sum_probs=32.1

Q ss_pred             CCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCCCcHHHHHHH
Q 040253            4 IAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDPDNKKKVKHL   48 (338)
Q Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~   48 (338)
                      .+++|.|++.+|..|.-++..+.+.|-++--  -+++..++++.+
T Consensus         2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~--l~~~t~~~L~~~   44 (163)
T d2csua3           2 RGNKVAIMTNAGGPGVLTADELDKRGLKLAT--LEEKTIEELRSF   44 (163)
T ss_dssp             SSSEEEEEESCHHHHHHHHHHHHTTTCEECC--CCHHHHHHHHHH
T ss_pred             CCCeEEEEECChHHHHHHHHHHHHcCCccCC--CCHHHHHHHHHh
Confidence            4689999999999999999999988876533  234445555444

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=80.28  E-value=0.87  Score=34.37  Aligned_cols=32  Identities=19%  Similarity=0.030  Sum_probs=28.4

Q ss_pred             EEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            7 TVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      .|+|+| +|+.|...+..+.+.|.+|.++.++.
T Consensus         4 DvvVIG-~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIG-GGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            478898 69999999999999999999998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.10  E-value=0.47  Score=35.38  Aligned_cols=38  Identities=11%  Similarity=0.017  Sum_probs=31.6

Q ss_pred             CCCCCcEEEEeCCchhhHHHHHHHHHHCCCeEEEEEcCC
Q 040253            1 MGSIAETVCVTGASGFIGSWLIMRLLERGYAVRATVRDP   39 (338)
Q Consensus         1 m~~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   39 (338)
                      |....++|+|+| +|..|...+..|.+.|.+|.++.+..
T Consensus         1 m~~~~~~VvIIG-gGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           1 LETHNTRLCIVG-SGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             CEEEEEEEEEEC-CSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             CCcccceEEEEC-CCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            444568999998 89999999999999999999887543