Citrus Sinensis ID: 040376

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVYDS
Secondary Structure (PSIPRED)
cccccccEEEEEcccccccccEEEEEccccccccccEEEEEEEEEccHHHHHHHHccccccccccccccccccccEEEEEEEccccccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEccccccHccEEEEccccccccccEEEEEEEEEEccHcHHHHcccccccccccccEEccccccEEEEEEcccccccccccEEEEEEcc
Coil and Loop (DISEMBL)
magkplmhavqynsygggaadlkhvelpvptpskdEVLLKLEAtalnpvdwkiqkgqlrpflprkfpcipgilvLPLIFCElesfnnfcpsrtyfdvyds
Flexible Loop (DISEMBL)
MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEAtalnpvdwkiQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVYDS
Low Complexity Region (SEG)
MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVYDS
Disordered region (IsUnstruct)
*********VQYNSYGGGAADLKHVELPV*****DEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY**
Disordered Region (DISOPRED)
****PLM*AVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVYDS
Disordered Region (DISEMBL)
MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVYDS
Disordered Region (DISPRO)
****PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVYDS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVYDS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q9SV68	329	Putative quinone-oxidored	yes	no	0.87	0.264	0.681	2e-28
Q8H0M1	329	Quinone-oxidoreductase ho	N/A	no	0.7	0.212	0.704	5e-24
O97764	330	Zeta-crystallin OS=Bos ta	yes	no	0.82	0.248	0.329	4e-05
Q28452	330	Quinone oxidoreductase OS	N/A	no	0.72	0.218	0.333	6e-05
Q0MVN8	329	Quinone oxidoreductase OS	yes	no	0.91	0.276	0.288	9e-05
Q54II4	352	Reticulon-4-interacting p	yes	no	0.65	0.184	0.367	0.0004

>sp|Q9SV68|QORH_ARATH Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MAGK LMHA+QYNSYGGGAA L+HV++PVPTP  +EV LKLEAT+LNPVDWKIQKG +RP
Sbjct: 1  MAGK-LMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRP 59

Query: 61 FLPRKFPCIPGILVLPLIFCELESFNNF 88
          FLPRKFPCIP   V   +        NF
Sbjct: 60 FLPRKFPCIPATDVAGEVVEVGSGVKNF 87

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8H0M1|QORH_SPIOL Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/71 (70%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MA K LMHA+QY+ YGGG   LKHVE+ VP P  DE+LLK+EA  LNP+DWKIQKG LRP
Sbjct: 1  MAAK-LMHAIQYSGYGGGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRP 59

Query: 61 FLPRKFPCIPG 71
           LPRKFP IPG
Sbjct: 60 LLPRKFPTIPG 70

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O97764|QOR_BOVIN Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 6/88 (6%)

Query: 3  GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRP 60
          G+ LM A++   +GG        ++ VP P   +VL+K++A  +NPVD  I+ G   ++P
Sbjct: 4  GQKLMRAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHNIKP 63

Query: 61 FLPRKFPCIPGILVLPLIFCELESFNNF 88
           LP      PG  V  +I    ES + F
Sbjct: 64 LLPYT----PGFDVAGIIEAVGESVSAF 87

Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding (By similarity). Has minimal or no quinone reductase activity. Binds strongly to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|Q28452|QOR_LAMGU Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 3  GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQL--RP 60
          G+ LM A++ + +GG        ++ VP P + +VL+K++A  +NPVD  I+ G    +P
Sbjct: 4  GQRLMRAIRVSEFGGPEVLKLQSDVAVPIPEEHQVLIKVQACGVNPVDTYIRSGTYSRKP 63

Query: 61 FLPRKFPCIPGILVLPLI 78
              + P  PG+ V  LI
Sbjct: 64 ----RLPYTPGLDVAGLI 77

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Lama guanicoe (taxid: 9840)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q0MVN8|QOR_PIG Quinone oxidoreductase OS=Sus scrofa GN=CRYZ PE=2 SV=1

 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 6/97 (6%)

Query: 3  GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRP 60
          G+ LM A++   +GG        ++ +P P  ++VL+K+ A  +NPVD  I+ G   ++P
Sbjct: 4  GQKLMSAIRVFKFGGPEVMKLQSDVAIPIPKDNQVLIKVHACGVNPVDTYIRSGTHNMKP 63

Query: 61 FLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV 97
           LP      PG+ V  ++    E  ++F      F V
Sbjct: 64 LLPYT----PGLDVAGIVEAVGEHVSSFKKGDRVFTV 96

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q54II4|RT4I1_DICDI Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=rtn4ip1 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 7  MHAVQYNSYGGGAADLKH-VELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF--LP 63
          M  +  N YG     L++  +LPVP P K +VL+K+ +T++NP+D  ++KG       L 
Sbjct: 1  MKGILLNGYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLK 60

Query: 64 RKFPCIPG 71
           K P I G
Sbjct: 61 LKLPIILG 68

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
312283475	329	unnamed protein product [Thellungiella h	0.7	0.212	0.802	5e-27
15235549	329	putative quinone-oxidoreductase-like pro	0.87	0.264	0.681	6e-27
297790792	329	oxidoreductase [Arabidopsis lyrata subsp	0.87	0.264	0.681	9e-27
224056699	332	predicted protein [Populus trichocarpa]	0.7	0.210	0.774	2e-26
224060149	335	predicted protein [Populus trichocarpa]	0.73	0.217	0.756	3e-25
356567800	329	PREDICTED: putative quinone-oxidoreducta	0.69	0.209	0.739	2e-24
118488767	329	unknown [Populus trichocarpa]	0.7	0.212	0.746	3e-24
224121506	329	predicted protein [Populus trichocarpa]	0.71	0.215	0.763	5e-24
255580501	109	conserved hypothetical protein [Ricinus	0.69	0.633	0.771	1e-23
224060147	279	predicted protein [Populus trichocarpa]	0.66	0.236	0.772	2e-23

>gi|312283475|dbj|BAJ34603.1| unnamed protein product [Thellungiella halophila]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/71 (80%), Positives = 64/71 (90%), Gaps = 1/71 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MAGK LMHA+QY SYGGGAA LKHV++PVP+P  +EVLLKLEAT+LNPVDWKIQKG +RP
Sbjct: 1  MAGK-LMHALQYESYGGGAAALKHVQVPVPSPMSNEVLLKLEATSLNPVDWKIQKGMIRP 59

Query: 61 FLPRKFPCIPG 71
          FLPRKFPCIP 
Sbjct: 60 FLPRKFPCIPA 70

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235549|ref|NP_193037.1| putative quinone-oxidoreductase-like protein [Arabidopsis thaliana] gi|67460977|sp|Q9SV68.1|QORH_ARATH RecName: Full=Putative quinone-oxidoreductase homolog, chloroplastic gi|15724256|gb|AAL06521.1|AF412068_1 AT4g13010/F25G13_100 [Arabidopsis thaliana] gi|5123942|emb|CAB45500.1| putative protein [Arabidopsis thaliana] gi|7268003|emb|CAB78343.1| putative protein [Arabidopsis thaliana] gi|15028001|gb|AAK76531.1| unknown protein [Arabidopsis thaliana] gi|15912237|gb|AAL08252.1| AT4g13010/F25G13_100 [Arabidopsis thaliana] gi|21436057|gb|AAM51229.1| unknown protein [Arabidopsis thaliana] gi|332657813|gb|AEE83213.1| putative quinone-oxidoreductase-like protein [Arabidopsis thaliana]

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MAGK LMHA+QYNSYGGGAA L+HV++PVPTP  +EV LKLEAT+LNPVDWKIQKG +RP
Sbjct: 1  MAGK-LMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRP 59

Query: 61 FLPRKFPCIPGILVLPLIFCELESFNNF 88
          FLPRKFPCIP   V   +        NF
Sbjct: 60 FLPRKFPCIPATDVAGEVVEVGSGVKNF 87

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790792|ref|XP_002863281.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297309115|gb|EFH39540.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score =  124 bits (310), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 68/88 (77%), Gaps = 1/88 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MAGK LMHA+QY+SYGGGAA LKHV++PVPTP  +EV LKLEAT+LNPVDWKIQKG +RP
Sbjct: 1  MAGK-LMHALQYDSYGGGAAALKHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRP 59

Query: 61 FLPRKFPCIPGILVLPLIFCELESFNNF 88
          FLPRKFPCIP   V   +        NF
Sbjct: 60 FLPRKFPCIPATDVAGEVVEVGSGVKNF 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056699|ref|XP_002298979.1| predicted protein [Populus trichocarpa] gi|222846237|gb|EEE83784.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/71 (77%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MAGK LMHA+QY+SY GG A LKHVE+P+P+P K EVLLKLEAT+LNP+DWKIQKG+LRP
Sbjct: 3  MAGK-LMHAIQYDSYDGGPAALKHVEVPLPSPQKYEVLLKLEATSLNPIDWKIQKGKLRP 61

Query: 61 FLPRKFPCIPG 71
          F PRKFP IPG
Sbjct: 62 FFPRKFPYIPG 72

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060149|ref|XP_002300061.1| predicted protein [Populus trichocarpa] gi|222847319|gb|EEE84866.1| predicted protein [Populus trichocarpa]

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/74 (75%), Positives = 64/74 (86%), Gaps = 1/74 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MAGK LMHAVQY++YGGGAA LKHVE+PVP+  +DEVLLKLEAT+LNPVDWK+QKG LRP
Sbjct: 1  MAGK-LMHAVQYSTYGGGAAGLKHVEVPVPSAKRDEVLLKLEATSLNPVDWKMQKGLLRP 59

Query: 61 FLPRKFPCIPGILV 74
           LPR+FP IP   V
Sbjct: 60 LLPRRFPYIPETFV 73

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567800|ref|XP_003552103.1| PREDICTED: putative quinone-oxidoreductase homolog, chloroplastic-like [Glycine max]

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/69 (73%), Positives = 59/69 (85%)

Query: 3  GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFL 62
          GK LMHAVQY+SYGGG A LKHVE+P+PTPSKDEVL+K+EA ++NP DWK+QK  L P L
Sbjct: 2  GKKLMHAVQYDSYGGGPAGLKHVEVPIPTPSKDEVLIKVEAASINPFDWKVQKRMLWPLL 61

Query: 63 PRKFPCIPG 71
          PRKFP IPG
Sbjct: 62 PRKFPHIPG 70

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488767|gb|ABK96194.1| unknown [Populus trichocarpa]

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/71 (74%), Positives = 62/71 (87%), Gaps = 1/71 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MAGK LMHAVQY++YGGGAA LKHVE+PVP+  +DEVLLKLEAT+LNPVDWK+Q G LRP
Sbjct: 1  MAGK-LMHAVQYSTYGGGAAGLKHVEVPVPSAKRDEVLLKLEATSLNPVDWKMQNGLLRP 59

Query: 61 FLPRKFPCIPG 71
           LP +FP +PG
Sbjct: 60 LLPWRFPYVPG 70

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121506|ref|XP_002330717.1| predicted protein [Populus trichocarpa] gi|222872493|gb|EEF09624.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 64/72 (88%), Gaps = 1/72 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MAGK LMHA+QY+SYGGGAA LKHVE+PVP+  KDEVLLKLEAT+LNP D++IQKG +RP
Sbjct: 1  MAGK-LMHALQYDSYGGGAAGLKHVEVPVPSAKKDEVLLKLEATSLNPYDFRIQKGVVRP 59

Query: 61 FLPRKFPCIPGI 72
          FLPR FP IPG+
Sbjct: 60 FLPRSFPYIPGL 71

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580501|ref|XP_002531075.1| conserved hypothetical protein [Ricinus communis] gi|223529321|gb|EEF31289.1| conserved hypothetical protein [Ricinus communis]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/70 (77%), Positives = 61/70 (87%), Gaps = 1/70 (1%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          MA K LMHAVQY+ YGGGAA LKHVE+PVP+P KDE+LLKLEAT++NPVDWKIQKG LRP
Sbjct: 1  MAAK-LMHAVQYDKYGGGAAGLKHVEVPVPSPKKDEILLKLEATSINPVDWKIQKGILRP 59

Query: 61 FLPRKFPCIP 70
            PR+FP IP
Sbjct: 60 IFPRRFPFIP 69

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060147|ref|XP_002300060.1| predicted protein [Populus trichocarpa] gi|222847318|gb|EEE84865.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 57/66 (86%)

Query: 6  LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRK 65
          LMHAVQY+SYGGGAA LKHVE+PVP+  +DEVLLKLEAT+LN  DWKIQKG LRP  PR+
Sbjct: 5  LMHAVQYSSYGGGAAGLKHVEVPVPSAKRDEVLLKLEATSLNAADWKIQKGILRPLFPRR 64

Query: 66 FPCIPG 71
          FP IPG
Sbjct: 65 FPYIPG 70

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
TAIR|locus:2123206	329	AT4G13010 [Arabidopsis thalian	0.69	0.209	0.814	8.2e-28
TIGR_CMR|BA_3435	317	BA_3435 "alcohol dehydrogenase	0.64	0.201	0.338	4.9e-06
UNIPROTKB|Q28452	330	CRYZ "Quinone oxidoreductase"	0.74	0.224	0.355	1.5e-05
UNIPROTKB|O53146	328	qor "NADPH2:quinone reductase"	0.6	0.182	0.369	2.4e-05
UNIPROTKB|O97764	330	CRYZ "Zeta-crystallin" [Bos ta	0.82	0.248	0.329	3.1e-05
TIGR_CMR|BA_3566	332	BA_3566 "alcohol dehydrogenase	0.63	0.189	0.323	3.1e-05
UNIPROTKB|G4NG94	356	MGG_12228 "Uncharacterized pro	0.38	0.106	0.552	3.5e-05
UNIPROTKB|Q0MVN8	329	CRYZ "Quinone oxidoreductase"	0.91	0.276	0.288	4e-05
UNIPROTKB|Q19QT8	330	CRYZ "Uncharacterized protein"	0.91	0.275	0.288	4e-05
DICTYBASE|DDB_G0288729	352	DDB_G0288729 "zinc-containing	0.65	0.184	0.367	4.5e-05

TAIR|locus:2123206 AT4G13010 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 57/70 (81%), Positives = 64/70 (91%)

Query:     1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
             MAGK LMHA+QYNSYGGGAA L+HV++PVPTP  +EV LKLEAT+LNPVDWKIQKG +RP
Sbjct:     1 MAGK-LMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRP 59

Query:    61 FLPRKFPCIP 70
             FLPRKFPCIP
Sbjct:    60 FLPRKFPCIP 69

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

TIGR_CMR|BA_3435 BA_3435 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 112 (44.5 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 22/65 (33%), Positives = 38/65 (58%)

Query:     7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
             M A+    YG  +  L+ +E+  P    ++VL+++ A  +NPVDWKI++G L+  +   F
Sbjct:     1 MKAIGLTQYGDKSV-LQEIEMQTPLLGDNDVLIEVYAAGVNPVDWKIREGLLQDVISYDF 59

Query:    67 PCIPG 71
             P + G
Sbjct:    60 PLVLG 64

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

UNIPROTKB|Q28452 CRYZ "Quinone oxidoreductase" [Lama guanicoe (taxid:9840)]

 Score = 108 (43.1 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 27/76 (35%), Positives = 42/76 (55%)

Query:     3 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFL 62
             G+ LM A++ + +GG        ++ VP P + +VL+K++A  +NPVD  I+ G      
Sbjct:     4 GQRLMRAIRVSEFGGPEVLKLQSDVAVPIPEEHQVLIKVQACGVNPVDTYIRSGTYSR-K 62

Query:    63 PRKFPCIPGILVLPLI 78
             PR  P  PG+ V  LI
Sbjct:    63 PR-LPYTPGLDVAGLI 77

GO:0003730 "mRNA 3'-UTR binding" evidence=ISS

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0042178 "xenobiotic catabolic process" evidence=ISS

GO:0070402 "NADPH binding" evidence=ISS

GO:0070404 "NADH binding" evidence=ISS

UNIPROTKB|O53146 qor "NADPH2:quinone reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 106 (42.4 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query:     7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
             MHA++    GG    L+HV+ P P P   E+L+K EA  +N +D   + GQ     PR+ 
Sbjct:     1 MHAIEVTETGGPGV-LRHVDQPQPQPGHGELLIKAEAIGVNFIDTYFRSGQY----PREL 55

Query:    67 PCIPG 71
             P + G
Sbjct:    56 PFVIG 60

GO:0005576 "extracellular region" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|O97764 CRYZ "Zeta-crystallin" [Bos taurus (taxid:9913)]

 Score = 105 (42.0 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 29/88 (32%), Positives = 45/88 (51%)

Query:     3 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRP 60
             G+ LM A++   +GG        ++ VP P   +VL+K++A  +NPVD  I+ G   ++P
Sbjct:     4 GQKLMRAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHNIKP 63

Query:    61 FLPRKFPCIPGILVLPLIFCELESFNNF 88
              LP      PG  V  +I    ES + F
Sbjct:    64 LLPYT----PGFDVAGIIEAVGESVSAF 87

GO:0005829 "cytosol" evidence=ISS;IDA

GO:0050661 "NADP binding" evidence=IDA

GO:0003960 "NADPH:quinone reductase activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TIGR_CMR|BA_3566 BA_3566 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 105 (42.0 bits), Expect = 3.1e-05, P = 3.1e-05
 Identities = 21/65 (32%), Positives = 40/65 (61%)

Query:     7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
             M A+  + YG     ++  E+P+P  ++ EVL ++ A ++NP+D+KI+ G+++  L  + 
Sbjct:     1 MKAMIIDKYG--KVPMRMAEVPIPEINEHEVLAEIHAASINPIDFKIRDGKVKMLLKYEM 58

Query:    67 PCIPG 71
             P I G
Sbjct:    59 PLILG 63

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

UNIPROTKB|G4NG94 MGG_12228 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 105 (42.0 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query:    17 GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQ 54
             G   DL   E PVPTP   EVL++  A A+NPVDWK+Q
Sbjct:    14 GVGEDLVLKEQPVPTPGASEVLIRNHALAVNPVDWKLQ 51

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0MVN8 CRYZ "Quinone oxidoreductase" [Sus scrofa (taxid:9823)]

 Score = 104 (41.7 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 28/97 (28%), Positives = 48/97 (49%)

Query:     3 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRP 60
             G+ LM A++   +GG        ++ +P P  ++VL+K+ A  +NPVD  I+ G   ++P
Sbjct:     4 GQKLMSAIRVFKFGGPEVMKLQSDVAIPIPKDNQVLIKVHACGVNPVDTYIRSGTHNMKP 63

Query:    61 FLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV 97
              LP      PG+ V  ++    E  ++F      F V
Sbjct:    64 LLPYT----PGLDVAGIVEAVGEHVSSFKKGDRVFTV 96

GO:0005829 "cytosol" evidence=ISS

GO:0070404 "NADH binding" evidence=ISS

GO:0070402 "NADPH binding" evidence=ISS

GO:0042178 "xenobiotic catabolic process" evidence=ISS

GO:0003730 "mRNA 3'-UTR binding" evidence=ISS

GO:0003960 "NADPH:quinone reductase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q19QT8 CRYZ "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 104 (41.7 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 28/97 (28%), Positives = 48/97 (49%)

Query:     3 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRP 60
             G+ LM A++   +GG        ++ +P P  ++VL+K+ A  +NPVD  I+ G   ++P
Sbjct:     4 GQRLMRAIRVFKFGGPEVMKLQSDVAIPIPKDNQVLIKVHACGVNPVDTYIRSGTHNMKP 63

Query:    61 FLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV 97
              LP      PG+ V  ++    E  ++F      F V
Sbjct:    64 LLPYT----PGLDVAGIVEAVGEHVSSFKKGDRVFTV 96

GO:0070402 "NADPH binding" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0042178 "xenobiotic catabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0003960 "NADPH:quinone reductase activity" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

DICTYBASE|DDB_G0288729 DDB_G0288729 "zinc-containing alcohol dehydrogenase (ADH)" [Dictyostelium discoideum (taxid:44689)]

 Score = 104 (41.7 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 25/68 (36%), Positives = 38/68 (55%)

Query:     7 MHAVQYNSYGGGAADLKH-VELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF--LP 63
             M  +  N YG     L++  +LPVP P K +VL+K+ +T++NP+D  ++KG       L 
Sbjct:     1 MKGILLNGYGESLDLLEYKTDLPVPKPIKSQVLIKIHSTSINPLDNVMRKGYASSIVDLK 60

Query:    64 RKFPCIPG 71
              K P I G
Sbjct:    61 LKLPIILG 68

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	100
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	3e-21
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	1e-20
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	1e-15
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-13
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-11
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-11
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	8e-11
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	9e-11
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	2e-08
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	5e-08
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	1e-07
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	2e-07
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	2e-07
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	3e-07
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	5e-07
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	5e-07
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-06
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	4e-06
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	5e-06
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	5e-06
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	9e-06
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	5e-05
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	2e-04
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	2e-04
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	2e-04
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-04
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	3e-04
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	3e-04
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	3e-04
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	4e-04
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	5e-04
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	7e-04
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	7e-04
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	8e-04
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	0.002
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	0.002
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	0.002
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	0.002
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	0.004

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 85.0 bits (211), Expect = 3e-21
 Identities = 30/64 (46%), Positives = 41/64 (64%), Gaps = 1/64 (1%)

Query: 10 VQYNSYGGGA-ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPC 68
          V Y  YG      L  VE+P+PTP   EVL+K+ A ++NPVDWK+++G  +  L R FP 
Sbjct: 1  VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 69 IPGI 72
          IPG+
Sbjct: 61 IPGM 64

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 83.0 bits (206), Expect = 1e-20
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M AV+ + YGG    L+  ++P P P   EVL+K+ A  +NPVD KI++G L+   P   
Sbjct: 1  MKAVRIHEYGG-PEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTL 59

Query: 67 PCIPG 71
          P IPG
Sbjct: 60 PLIPG 64

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M AV    +GG    LK VE+P P P   EVL++++A  +NP+D  +++G   P   R  
Sbjct: 1  MKAVVVEEFGGPE-VLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPP--VRPL 57

Query: 67 PCIPGI 72
          P IPG 
Sbjct: 58 PFIPGS 63

Length = 326

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A++Y+ +G     L+  +LPVPTP   EVL+++ A+ +NPVD  I+ G   P LP   
Sbjct: 1  MRAIRYHEFGA-PDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGA-YPGLP-PL 57

Query: 67 PCIPG 71
          P +PG
Sbjct: 58 PYVPG 62

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.3 bits (142), Expect = 1e-11
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A+   S+GG     +  E+P P P   +VL+++ A+ +NP+D KI++G          
Sbjct: 1  MKALVLESFGG-PEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGA--AARPPL 57

Query: 67 PCIPGI 72
          P I G 
Sbjct: 58 PAILGC 63

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
            A      GGG   L  V++PVP P  DEVL+K++A ALNPVDWK Q           +
Sbjct: 1  QKAAVLTGPGGGL--LVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDY----GFIPSY 54

Query: 67 PCIPG 71
          P I G
Sbjct: 55 PAILG 59

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M AV    +GG    L++ +LP P P  DEVL++++A ALN +D  +++G   P +    
Sbjct: 1  MKAVVIRGHGGPEV-LEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGM--PGIKLPL 57

Query: 67 PCIPG 71
          P I G
Sbjct: 58 PHILG 62

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.1 bits (136), Expect = 9e-11
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A       G A  L   E+ +P P   EVL+K+ A  LNPVDWK+       +    +
Sbjct: 1  MKAWVLPK-PGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAW---SY 56

Query: 67 PCIPGI 72
          P +PG+
Sbjct: 57 PHVPGV 62

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 49.4 bits (119), Expect = 2e-08
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 7  MHAVQYNSYGGGAAD--LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQ 57
          M A+ +           L  +ELP P P   ++L+++EA ++NPVD K++ G 
Sbjct: 1  MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGG 53

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSK-DEVLLKLEATALNPVDWKIQKGQLRPFL--P 63
          M A Q +SYGG  + L      +P   K ++VL+K+ A ++NP+D  ++ G  R  L   
Sbjct: 1  MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKK 60

Query: 64 RKFP-CIPGILVLPLI 78
          RK   C    +  PL 
Sbjct: 61 RKPQSCKYSGIEFPLT 76

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A++ + +G     L   ++P P P   +V + + A  ++ VD +++ G      P + 
Sbjct: 1  MRAIRLHEFGP-PEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPEL 59

Query: 67 PCIPG 71
          P +PG
Sbjct: 60 PYVPG 64

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 7  MHAVQYNSYGGGAADLKHVELP---VPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLP 63
          M A+    YG    ++K + LP   VP P   EVL+K+EA  +NP D    KGQ      
Sbjct: 1  MKALLLEEYGK-PLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQY--GST 57

Query: 64 RKFPCIPG 71
          +  P  PG
Sbjct: 58 KALPVPPG 65

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 8  HAVQYNSYGGGAAD-LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
           AV+ +  GG   + L++ ++PVP P   EVL++  A  +N +D   + G      P   
Sbjct: 1  KAVRIHKTGG--PEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSG----LYPLPL 54

Query: 67 PCIPG 71
          P + G
Sbjct: 55 PFVLG 59

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 7  MHAVQYNSYGGGAAD-LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRK 65
          M AV+++ +GG   + L+  ELPVP P   EVL+++EA  LN  D   ++G      P  
Sbjct: 1  MRAVRFHQFGG--PEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIE--PPP 56

Query: 66 FPCIPG 71
           P   G
Sbjct: 57 LPARLG 62

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A +   YG     L+  ++PVP P   +VL+++    +   D  +  G     LP K 
Sbjct: 1  MKAARLYEYGKP---LRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKL 57

Query: 67 PCIPG 71
          P   G
Sbjct: 58 PFTLG 62

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 16 GGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPG 71
          GGG  +LK VE PVP P   EVL+++ A +LN  D  I  G+  P  P K P IP 
Sbjct: 9  GGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPP--PVKDPLIPL 62

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPR-K 65
          M A     +G     L+  E+PVP P   EVL+K+EA  +   D  + KG      P  K
Sbjct: 4  MKAAVLKKFGQP---LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKG----DWPVPK 56

Query: 66 FPCIPG 71
           P IPG
Sbjct: 57 LPLIPG 62

Length = 339

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDW 51
          M A  Y  +G     L+  E+P P P  D V++++EA  +   DW
Sbjct: 1  MRAAVYEEFG---EPLEIREVPDPEPPPDGVVVEVEACGVCRSDW 42

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 10 VQYNSYGGGAAD-LKHVELPVPTPSKDEVLLKLEATALNPVD-WKIQKGQLRPFLPRKFP 67
          V Y  +G      L+ V LP+P P   EVL+++ A  +NP D   I  G      P   P
Sbjct: 1  VVYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITIS-GAYGSRPP--LP 57

Query: 68 CIPG 71
           +PG
Sbjct: 58 AVPG 61

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 42.4 bits (101), Expect = 5e-06
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALN 47
          M A+      GG   L+  E+P P P   EVL+++ A  +N
Sbjct: 1  MKAIVIKE-PGGPEVLELGEVPKPAPGPGEVLIRVAAAGVN 40

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 36 EVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPG 71
          EVL+++EA  L   D  I++G   P  P K P I G
Sbjct: 1  EVLVRVEAAGLCGTDLHIRRGGYPP--PPKLPLILG 34

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVE-LPVPTPSKDEVLLKLEATALNPVD 50
          M AV    +GG    L + + +PVPTP+  EVL+++ A  +N  D
Sbjct: 1  MRAVLLTGHGGLDK-LVYRDDVPVPTPAPGEVLIRVGACGVNNTD 44

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 12 YNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPF 61
           N+       +  ++LP+P     +E+++K+ A ALNPVD K+       F
Sbjct: 7  KNNTS--PLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHF 55

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A+     GG    LK  E+P+P P    VL++++A  LN  +   ++G        KF
Sbjct: 1  MKAIVIEQPGGPEV-LKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGH---SPSVKF 56

Query: 67 PCIPGI 72
          P + GI
Sbjct: 57 PRVLGI 62

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 24/35 (68%)

Query: 22 LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG 56
          L  ++LP P P   ++L++++A ++NPVD K++  
Sbjct: 17 LVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRAR 51

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEAT 44
          M A     +G      +  ++PVP P   EVL+KLEA+
Sbjct: 1  MKAAVVEEFGE--KPYEVKDVPVPEPGPGEVLVKLEAS 36

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 6  LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVD 50
          +M AV    +GG    LK  E P P P +++VL+K+ A  +N  D
Sbjct: 1  MMRAVTLKGFGG-VDVLKIGESPKPAPKRNDVLIKVSAAGVNRAD 44

Length = 334

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 4/38 (10%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEAT 44
          M A+     G    DL++ ++P P P   EVL+K++A 
Sbjct: 1  MKALVLTGPG----DLRYEDIPKPEPGPGEVLVKVKAC 34

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 22 LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPG 71
          L+  E+PVP P   EVL+K+EA  +   D  I +G L    P K P IPG
Sbjct: 17 LRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDL---PPPKLPLIPG 63

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 18 GAADLKHVELPVPTPSKDEVLLKLEATALNPVDWK-IQKGQLRPFLPRKFPCIPG 71
          G  +LK  ++  P P   EVL++++   +NPVD+  I   +++P      P IPG
Sbjct: 10 GIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVKP-----MPHIPG 59

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSK-DEVLLKLEATALNPVDWKIQKG--QLRPFLP 63
          M AV     GG   DL   E+P P P    EV +++EA  +N  D  + +G  Q++P LP
Sbjct: 1  MKAVVCKELGG-PEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLP 58

Query: 64 RKFPCIPG 71
            F  +PG
Sbjct: 59 --F--VPG 62

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEA 43
          M A +++   G    L   E+PVP P   EVL+K++A
Sbjct: 1  MKAWRFH--KGSKGLLVLEEVPVPEPGPGEVLVKVKA 35

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPR-K 65
          M A   +        L+  E+P P P   EVL+K++A  +   D    KG    F PR K
Sbjct: 1  MKAAILHKPNKP---LQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKG----FFPRGK 53

Query: 66 FPCIPG 71
          +P I G
Sbjct: 54 YPLILG 59

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQL------RP 60
          M A      G     L+ VE+  P P   EVL+K+ A  +   D  I  G          
Sbjct: 1  MKAAAVVEPG---KPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTM 57

Query: 61 FLPR---KFPCIPG 71
           L     K P + G
Sbjct: 58 SLDDRGVKLPLVLG 71

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A++    GG    L  VE+P+P P   EVL+++ A  +N  D   + G+  P  P   
Sbjct: 1  MKAIEITEPGGPEV-LVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPP--PPGA 57

Query: 67 PCIPG 71
            I G
Sbjct: 58 SDILG 62

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 25 VELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPR-KFPCIPG 71
           E+P P P KDEV++K+    L   D      QL+ F PR K+P I G
Sbjct: 16 EEVPDPKPGKDEVVIKVNYAGLCYRDLL----QLQGFYPRMKYPVILG 59

Length = 334

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A+ Y   G G  +L+  E+PVP P  DEVL+K+ A  +   D  I +G+   F     
Sbjct: 1  MKALVY--EGPG--ELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGE---FGA-AP 52

Query: 67 PCIPG 71
          P +PG
Sbjct: 53 PLVPG 57

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A   +    G  D++  E+PVP P   EVL+K+ A  +   D K  +G        K 
Sbjct: 1  MKAAVLH----GPNDVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDL---KP 53

Query: 67 PCIPG 71
          P I G
Sbjct: 54 PRILG 58

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 34.7 bits (80), Expect = 0.004
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 26 ELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPG 71
          E+PVP P + E+L+++ A  +   D  + KG+L PF P   P + G
Sbjct: 17 EIPVPRPKEGEILIRVAACGVCHSDLHVLKGEL-PFPP---PFVLG 58

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.93
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	99.89
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.89
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.88
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.86
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.86
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.83
PLN02740	381	Alcohol dehydrogenase-like	99.83
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.83
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.83
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.82
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.82
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.81
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.81
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.81
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.8
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.8
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.78
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.77
PLN02827	378	Alcohol dehydrogenase-like	99.77
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.77
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.77
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.76
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.76
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.75
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.75
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.75
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.75
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.73
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.73
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.73
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.72
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.72
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.71
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.71
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.7
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.7
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.7
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.7
PRK10083	339	putative oxidoreductase; Provisional	99.7
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.7
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.7
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.7
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.7
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.69
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.69
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.69
PTZ00354	334	alcohol dehydrogenase; Provisional	99.69
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.68
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.68
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.68
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.67
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.67
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.67
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.67
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.67
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.66
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.66
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.66
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.66
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.66
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.66
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.66
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.65
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.65
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.65
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.65
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.65
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.65
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.64
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.64
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.64
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.64
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.64
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.64
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.64
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.64
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.64
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.63
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.63
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.63
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.63
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.63
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.63
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.63
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.62
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.62
PLN02702	364	L-idonate 5-dehydrogenase	99.62
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.62
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.62
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.62
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.62
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.61
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.6
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.6
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.6
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.6
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.59
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.58
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.58
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.58
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.57
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.57
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.56
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.55
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.55
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.54
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.54
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.53
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.53
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.53
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.52
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.5
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.49
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.49
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.49
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.48
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.34
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.25
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.18
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.12
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	98.88
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	98.85
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	98.25
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	97.61
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	94.29
cd00320	93	cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); C	93.77
PTZ00414	100	10 kDa heat shock protein; Provisional	93.3
PRK00364	95	groES co-chaperonin GroES; Reviewed	92.97
PRK14533	91	groES co-chaperonin GroES; Provisional	91.18
COG0234	96	GroS Co-chaperonin GroES (HSP10) [Posttranslationa	90.72
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	90.67
PF00166	93	Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR0208	90.47
KOG1641	104	consensus Mitochondrial chaperonin [Posttranslatio	82.15

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.93  E-value=8.3e-26  Score=151.88  Aligned_cols=86  Identities=28%  Similarity=0.373  Sum_probs=80.7

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .+|||+++.+++++   +++.+.+.|.|+++||+|+++|||+|++|++.++|.++   ...+|.++|||.+|+|+++|++
T Consensus         2 ~~mkA~~~~~~~~p---l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~---~~~~P~ipGHEivG~V~~vG~~   75 (339)
T COG1064           2 MTMKAAVLKKFGQP---LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWP---VPKLPLIPGHEIVGTVVEVGEG   75 (339)
T ss_pred             cceEEEEEccCCCC---ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCC---CCCCCccCCcceEEEEEEecCC
Confidence            46999999999887   89999999999999999999999999999999999987   4459999999999999999999


Q ss_pred             CCccCCCCEEEe
Q 040376           85 FNNFCPSRTYFD   96 (100)
Q Consensus        85 v~~~~~Gd~V~~   96 (100)
                      |++|++||||..
T Consensus        76 V~~~k~GDrVgV   87 (339)
T COG1064          76 VTGLKVGDRVGV   87 (339)
T ss_pred             CccCCCCCEEEe
Confidence            999999999965

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=1.1e-22  Score=134.98  Aligned_cols=90  Identities=18%  Similarity=0.202  Sum_probs=81.7

Q ss_pred             CcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEee
Q 040376            2 AGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCE   81 (100)
Q Consensus         2 ~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v   81 (100)
                      +.+.+.++|.+..+++. ..+++.+++.|+++++||+|+++|||+|++|++++.|.|+   ...+|.++|||.+|+|+++
T Consensus         5 ~~p~k~~g~~~~~~~G~-l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg---~s~~PlV~GHEiaG~Vvkv   80 (360)
T KOG0023|consen    5 SIPEKQFGWAARDPSGV-LSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWG---LSKYPLVPGHEIAGVVVKV   80 (360)
T ss_pred             cCchhhEEEEEECCCCC-CCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCC---cccCCccCCceeeEEEEEE
Confidence            34667899999888774 5577899999999999999999999999999999999987   4789999999999999999


Q ss_pred             cCCCCccCCCCEEE
Q 040376           82 LESFNNFCPSRTYF   95 (100)
Q Consensus        82 G~~v~~~~~Gd~V~   95 (100)
                      |++|++|++||||-
T Consensus        81 Gs~V~~~kiGD~vG   94 (360)
T KOG0023|consen   81 GSNVTGFKIGDRVG   94 (360)
T ss_pred             CCCcccccccCeee
Confidence            99999999999994

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.89  E-value=9.6e-23  Score=136.20  Aligned_cols=87  Identities=20%  Similarity=0.223  Sum_probs=81.0

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      .+|++++.+.++|   |+++++.++.|++|||+||+.|+|+|++|...+.|..+    ..+|.++|||.+|+|+++|++|
T Consensus         2 k~~aAV~~~~~~P---l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p----~~~P~vLGHEgAGiVe~VG~gV   74 (366)
T COG1062           2 KTRAAVAREAGKP---LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDP----EGFPAVLGHEGAGIVEAVGEGV   74 (366)
T ss_pred             CceEeeeecCCCC---eEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCC----CCCceecccccccEEEEecCCc
Confidence            3689999989988   99999999999999999999999999999999999865    3599999999999999999999


Q ss_pred             CccCCCCEEEeecC
Q 040376           86 NNFCPSRTYFDVYD   99 (100)
Q Consensus        86 ~~~~~Gd~V~~~~~   99 (100)
                      +.+++||+|+.+|.
T Consensus        75 t~vkpGDhVI~~f~   88 (366)
T COG1062          75 TSVKPGDHVILLFT   88 (366)
T ss_pred             cccCCCCEEEEccc
Confidence            99999999998875

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.88  E-value=5.3e-22  Score=134.08  Aligned_cols=89  Identities=29%  Similarity=0.458  Sum_probs=81.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++.+.+++++ +.+++++.+.|.|++|||+|||++++|||.|++.+.|...  ...++|.++|.|++|+|+++|++|+
T Consensus         1 mka~~~~~~g~~-~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~--~~~~~P~i~G~d~aG~V~avG~~V~   77 (326)
T COG0604           1 MKAVVVEEFGGP-EVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAP--PVRPLPFIPGSEAAGVVVAVGSGVT   77 (326)
T ss_pred             CeEEEEeccCCC-ceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCC--CCCCCCCcccceeEEEEEEeCCCCC
Confidence            789999999887 6699999999999999999999999999999999998732  2456899999999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      .|++||||+...
T Consensus        78 ~~~~GdrV~~~~   89 (326)
T COG0604          78 GFKVGDRVAALG   89 (326)
T ss_pred             CcCCCCEEEEcc
Confidence            999999998863

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.86  E-value=2.1e-21  Score=125.89  Aligned_cols=91  Identities=25%  Similarity=0.391  Sum_probs=84.4

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +...|.+++++.|++ +.+++++.+.|+|.++|++||.+|||+|+.|...++|.+.   +.++|.+||.|.+|+|+++|+
T Consensus         6 p~~~k~i~v~e~Ggy-dvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~---~~plPytpGmEaaGvVvAvG~   81 (336)
T KOG1197|consen    6 PPLLKCIVVTEFGGY-DVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD---PAPLPYTPGMEAAGVVVAVGE   81 (336)
T ss_pred             CchheEEEEeccCCc-ceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccC---CCCCCcCCCcccceEEEEecC
Confidence            456799999999998 9999999999999999999999999999999999999985   468899999999999999999


Q ss_pred             CCCccCCCCEEEeec
Q 040376           84 SFNNFCPSRTYFDVY   98 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~~   98 (100)
                      ++++|++||||.-+.
T Consensus        82 gvtdrkvGDrVayl~   96 (336)
T KOG1197|consen   82 GVTDRKVGDRVAYLN   96 (336)
T ss_pred             CccccccccEEEEec
Confidence            999999999997653

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=2.1e-21  Score=128.72  Aligned_cols=89  Identities=21%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .++||++..+++.|   |.++|+..++|+.+||+||+.++++|++|...+.|..+   ...+|.++|||++|+|+++|++
T Consensus         6 I~CKAAV~w~a~~P---L~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~---~~~fP~IlGHEaaGIVESvGeg   79 (375)
T KOG0022|consen    6 ITCKAAVAWEAGKP---LVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDP---EGLFPVILGHEAAGIVESVGEG   79 (375)
T ss_pred             eEEeEeeeccCCCC---eeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCc---cccCceEecccceeEEEEecCC
Confidence            46899999999988   99999999999999999999999999999999988753   5678999999999999999999


Q ss_pred             CCccCCCCEEEeecC
Q 040376           85 FNNFCPSRTYFDVYD   99 (100)
Q Consensus        85 v~~~~~Gd~V~~~~~   99 (100)
                      |+.|++||+|+.+|.
T Consensus        80 V~~vk~GD~Viplf~   94 (375)
T KOG0022|consen   80 VTTVKPGDHVIPLFT   94 (375)
T ss_pred             ccccCCCCEEeeccc
Confidence            999999999998863

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.83  E-value=5.4e-20  Score=125.15  Aligned_cols=84  Identities=19%  Similarity=0.303  Sum_probs=76.1

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +||++++++++.+   +++++.+.|.|+++||+||+.++++|++|++...|.+.    ..+|.++|||++|+|+++|+++
T Consensus         1 ~mka~~~~~~~~~---~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~----~~~p~i~G~e~~G~V~~vG~~v   73 (358)
T TIGR03451         1 TVRGVIARSKGAP---VELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN----DEFPFLLGHEAAGVVEAVGEGV   73 (358)
T ss_pred             CcEEEEEccCCCC---CEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc----ccCCcccccceEEEEEEeCCCC
Confidence            5999999998776   78899999999999999999999999999999887643    3468899999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      ++|++||+|++
T Consensus        74 ~~~~~GdrV~~   84 (358)
T TIGR03451        74 TDVAPGDYVVL   84 (358)
T ss_pred             cccCCCCEEEE
Confidence            99999999986

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02740 Alcohol dehydrogenase-like

Probab=99.83  E-value=6e-20  Score=125.95  Aligned_cols=88  Identities=22%  Similarity=0.190  Sum_probs=77.1

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .+||++++.+++.+   +.+++.+.|.|.++||+||++++|+|++|++.+.|.+..  ...+|.++|||++|+|+++|++
T Consensus         9 ~~mka~~~~~~~~~---~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~--~~~~p~i~GhE~~G~V~~vG~~   83 (381)
T PLN02740          9 ITCKAAVAWGPGEP---LVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA--QRAYPRILGHEAAGIVESVGEG   83 (381)
T ss_pred             eeeEEEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcc--cCCCCccccccceEEEEEeCCC
Confidence            47999999876654   788899999999999999999999999999998886531  2357899999999999999999


Q ss_pred             CCccCCCCEEEee
Q 040376           85 FNNFCPSRTYFDV   97 (100)
Q Consensus        85 v~~~~~Gd~V~~~   97 (100)
                      +++|++||||++.
T Consensus        84 v~~~~vGdrV~~~   96 (381)
T PLN02740         84 VEDLKAGDHVIPI   96 (381)
T ss_pred             CCcCCCCCEEEec
Confidence            9999999999864

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.83  E-value=5e-20  Score=125.12  Aligned_cols=87  Identities=20%  Similarity=0.282  Sum_probs=73.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.. +++ + +++++.+.|.|+++||+||++++++|++|++.+.|.+.......+|.++|||++|+|+++|++ +
T Consensus         1 mka~~~~~-~~~-~-l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~   76 (355)
T cd08230           1 MKAIAVKP-GKP-G-VRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-S   76 (355)
T ss_pred             CceeEecC-CCC-C-CeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-C
Confidence            68888874 333 3 899999999999999999999999999999999887532112246789999999999999999 9


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||||+..
T Consensus        77 ~~~vGdrV~~~   87 (355)
T cd08230          77 GLSPGDLVVPT   87 (355)
T ss_pred             CCCCCCEEEec
Confidence            99999999764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.83  E-value=6.4e-20  Score=126.55  Aligned_cols=82  Identities=13%  Similarity=0.105  Sum_probs=71.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCC-------CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEE
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPS-------KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIF   79 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~-------~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~   79 (100)
                      |||+++..++    .+++++.+.|.|+       ++|||||+.++|||++|++.+.|.+.    ..+|.++|||++|+|+
T Consensus         3 mka~v~~~~~----~~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~----~~~p~i~GhE~~G~V~   74 (393)
T TIGR02819         3 NRGVVYLGPG----KVEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT----APTGLVLGHEITGEVI   74 (393)
T ss_pred             ceEEEEecCC----ceeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC----CCCCccccceeEEEEE
Confidence            8999887643    3888899988874       68999999999999999999887542    3568999999999999


Q ss_pred             eecCCCCccCCCCEEEe
Q 040376           80 CELESFNNFCPSRTYFD   96 (100)
Q Consensus        80 ~vG~~v~~~~~Gd~V~~   96 (100)
                      ++|++|++|++||||..
T Consensus        75 ~vG~~V~~~~vGdrV~~   91 (393)
T TIGR02819        75 EKGRDVEFIKIGDIVSV   91 (393)
T ss_pred             EEcCccccccCCCEEEE
Confidence            99999999999999965

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.82  E-value=8.6e-20  Score=124.70  Aligned_cols=87  Identities=22%  Similarity=0.235  Sum_probs=77.0

Q ss_pred             eeeEEEcccCCC-----CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEee
Q 040376            7 MHAVQYNSYGGG-----AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCE   81 (100)
Q Consensus         7 ~ka~~~~~~~~~-----~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v   81 (100)
                      |||+++.++|.+     ++.+++++.+.|.|+++||+||+.+++||++|++.+.|.++    ..+|.++|||++|+|+++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~----~~~p~i~GhE~~G~V~~v   76 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP----RPLPMALGHEAAGVVVEV   76 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC----CCCCccCCccceeEEEEe
Confidence            799999987752     26789999999999999999999999999999999888643    346889999999999999


Q ss_pred             cCCCCccCCCCEEEee
Q 040376           82 LESFNNFCPSRTYFDV   97 (100)
Q Consensus        82 G~~v~~~~~Gd~V~~~   97 (100)
                      |+++++|++||||++.
T Consensus        77 G~~v~~~~~GdrV~~~   92 (371)
T cd08281          77 GEGVTDLEVGDHVVLV   92 (371)
T ss_pred             CCCCCcCCCCCEEEEc
Confidence            9999999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.82  E-value=1.6e-19  Score=123.18  Aligned_cols=86  Identities=22%  Similarity=0.169  Sum_probs=76.5

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++.+.+.+   +++++.+.|.|+++||+||+.++++|++|++.+.|..+   ...+|.++|||++|+|+++|+++
T Consensus         2 ~~ka~~~~~~~~~---~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v   75 (369)
T cd08301           2 TCKAAVAWEAGKP---LVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQ---TPLFPRILGHEAAGIVESVGEGV   75 (369)
T ss_pred             ccEEEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCC---CCCCCcccccccceEEEEeCCCC
Confidence            5899998876654   88999999999999999999999999999998887653   34568899999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||||+++
T Consensus        76 ~~~~~GdrV~~~   87 (369)
T cd08301          76 TDLKPGDHVLPV   87 (369)
T ss_pred             CccccCCEEEEc
Confidence            999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=4.1e-20  Score=122.92  Aligned_cols=88  Identities=16%  Similarity=0.069  Sum_probs=76.7

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +.|+|+++.+.    .++++++.+.|++ .|+||+|+++++|||.+|++.+.+.....+..+.|.++|||.+|+|.++|+
T Consensus         3 ~~~~A~vl~g~----~di~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~   78 (354)
T KOG0024|consen    3 ADNLALVLRGK----GDIRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGD   78 (354)
T ss_pred             cccceeEEEcc----CceeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcc
Confidence            45899999875    4489999999987 999999999999999999999887654334457899999999999999999


Q ss_pred             CCCccCCCCEEEe
Q 040376           84 SFNNFCPSRTYFD   96 (100)
Q Consensus        84 ~v~~~~~Gd~V~~   96 (100)
                      .|+.+++||||..
T Consensus        79 ~Vk~LkVGDrVai   91 (354)
T KOG0024|consen   79 EVKHLKVGDRVAI   91 (354)
T ss_pred             cccccccCCeEEe
Confidence            9999999999963

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.81  E-value=1.3e-19  Score=105.18  Aligned_cols=62  Identities=24%  Similarity=0.289  Sum_probs=53.2

Q ss_pred             CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376           34 KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        34 ~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      |+||+||++++|||++|++.+.+...  ....+|.++|||++|+|+++|+++++|++||+|+..
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~--~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~   62 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPP--PPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVS   62 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSS--STSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEE
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccc--cCCCCCcccccceeeeeeeeccccccccccceeeee
Confidence            68999999999999999999998522  256789999999999999999999999999999874

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.81  E-value=3.4e-19  Score=121.77  Aligned_cols=85  Identities=24%  Similarity=0.171  Sum_probs=75.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++...+..   +++++.+.|.|.++||+||++++++|++|++...|.++   ...+|.++|||++|+|+++|++++
T Consensus         2 ~~a~~~~~~~~~---l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~vG~~v~   75 (368)
T TIGR02818         2 SRAAVAWAAGQP---LKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADP---EGVFPVILGHEGAGIVEAVGEGVT   75 (368)
T ss_pred             ceEEEEecCCCC---eEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCC---CCCCCeeeccccEEEEEEECCCCc
Confidence            789888876554   88899999999999999999999999999999888653   235789999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||++.
T Consensus        76 ~~~~GdrV~~~   86 (368)
T TIGR02818        76 SVKVGDHVIPL   86 (368)
T ss_pred             cCCCCCEEEEc
Confidence            99999999764

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.80  E-value=5.9e-19  Score=120.51  Aligned_cols=86  Identities=22%  Similarity=0.158  Sum_probs=75.8

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +||++++...+++   +++++.+.|.|.++||+||++++++|+.|++...|.++   ...+|.++|||++|+|+++|+++
T Consensus         2 ~~~a~~~~~~~~~---~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v   75 (368)
T cd08300           2 TCKAAVAWEAGKP---LSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADP---EGLFPVILGHEGAGIVESVGEGV   75 (368)
T ss_pred             cceEEEEecCCCC---cEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCc---cCCCCceeccceeEEEEEeCCCC
Confidence            5899988776554   88899999999999999999999999999999887653   23578899999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||+|++.
T Consensus        76 ~~~~vGdrV~~~   87 (368)
T cd08300          76 TSVKPGDHVIPL   87 (368)
T ss_pred             ccCCCCCEEEEc
Confidence            999999999865

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.80  E-value=7.3e-19  Score=117.72  Aligned_cols=86  Identities=15%  Similarity=0.274  Sum_probs=72.0

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeC-hhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALN-PVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~-~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      +||++++.++    +.+++++.+.|.|+++||+||+.+++|| .+|++.+.|.++......+|.++|||++|+|+++|++
T Consensus         1 ~~ka~~~~~~----~~l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~   76 (308)
T TIGR01202         1 KTQAIVLSGP----NQIELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPD   76 (308)
T ss_pred             CceEEEEeCC----CeEEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCC
Confidence            3788888753    5589999999999999999999999997 5899888876542111357899999999999999999


Q ss_pred             CCccCCCCEEEe
Q 040376           85 FNNFCPSRTYFD   96 (100)
Q Consensus        85 v~~~~~Gd~V~~   96 (100)
                      + .|++||||+.
T Consensus        77 v-~~~vGdrV~~   87 (308)
T TIGR01202        77 T-GFRPGDRVFV   87 (308)
T ss_pred             C-CCCCCCEEEE
Confidence            8 6999999985

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.78  E-value=2.4e-18  Score=115.48  Aligned_cols=89  Identities=27%  Similarity=0.336  Sum_probs=76.1

Q ss_pred             eeeEEEcccCCCC--cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            7 MHAVQYNSYGGGA--ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         7 ~ka~~~~~~~~~~--~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      ||++++.+++.+.  +.+++.+.+.|.|+++||+||+.++++|+.|+....|.++.  ...+|.++|||++|+|+++|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~--~~~~p~v~G~e~~G~V~~vG~~   78 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGS--TKALPVPPGFEGSGTVVAAGGG   78 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCcCCCcceEEEEEEECCC
Confidence            6899998876531  45888899999999999999999999999999998886542  2356789999999999999999


Q ss_pred             CCc-cCCCCEEEee
Q 040376           85 FNN-FCPSRTYFDV   97 (100)
Q Consensus        85 v~~-~~~Gd~V~~~   97 (100)
                      +++ |++||+|+++
T Consensus        79 v~~~~~vGd~V~~~   92 (324)
T cd08291          79 PLAQSLIGKRVAFL   92 (324)
T ss_pred             ccccCCCCCEEEec
Confidence            986 9999999875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.77  E-value=3.5e-18  Score=115.23  Aligned_cols=85  Identities=22%  Similarity=0.280  Sum_probs=73.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+.    +.+++++.+.|.|.++||+||+.++++|+.|++.+.+.+..  ....|.++|||++|+|+++|++++
T Consensus         1 mka~~~~~~----~~l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~--~~~~p~i~G~e~~G~V~~vG~~v~   74 (339)
T cd08239           1 MRGAVFPGD----RTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA--PAYQGVIPGHEPAGVVVAVGPGVT   74 (339)
T ss_pred             CeEEEEecC----CceEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc--cCCCCceeccCceEEEEEECCCCc
Confidence            789988753    45899999999999999999999999999999988765431  223578999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+..
T Consensus        75 ~~~~Gd~V~~~   85 (339)
T cd08239          75 HFRVGDRVMVY   85 (339)
T ss_pred             cCCCCCEEEEC
Confidence            99999999864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=99.77  E-value=3.3e-18  Score=117.40  Aligned_cols=83  Identities=23%  Similarity=0.182  Sum_probs=73.0

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      .||++++.+.+   +.+++++.+.|.|+++||+||+.++|+|++|++.+.+..      .+|.++|||++|+|+++|+++
T Consensus        12 ~mka~~~~~~~---~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~------~~p~i~GhE~~G~V~~vG~~v   82 (378)
T PLN02827         12 TCRAAVAWGAG---EALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA------LFPRIFGHEASGIVESIGEGV   82 (378)
T ss_pred             eeEEEEEecCC---CCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC------CCCeeecccceEEEEEcCCCC
Confidence            59999987654   348889999999999999999999999999999876631      357899999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||+|++.
T Consensus        83 ~~~~~GdrV~~~   94 (378)
T PLN02827         83 TEFEKGDHVLTV   94 (378)
T ss_pred             cccCCCCEEEEe
Confidence            999999999875

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.77  E-value=2.8e-18  Score=117.09  Aligned_cols=86  Identities=12%  Similarity=0.139  Sum_probs=71.5

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++.+...+.. +.+++.+.+.|.|+++||+||+.++|+|++|++.+.|.+.   ...+|.++|||++|+|+++|++++
T Consensus        11 ~~~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~---~~~~p~i~GhE~~G~V~~vG~~v~   86 (360)
T PLN02586         11 QKAFGWAARDPS-GVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWG---FTRYPIVPGHEIVGIVTKLGKNVK   86 (360)
T ss_pred             hheeEEEecCCC-CCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcC---CCCCCccCCcceeEEEEEECCCCC
Confidence            565555444443 5588888888999999999999999999999999887643   235688999999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      +|++||+|+.
T Consensus        87 ~~~vGdrV~~   96 (360)
T PLN02586         87 KFKEGDRVGV   96 (360)
T ss_pred             ccCCCCEEEE
Confidence            9999999973

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.77  E-value=3.1e-18  Score=112.71  Aligned_cols=92  Identities=21%  Similarity=0.274  Sum_probs=83.6

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +...|+++++.+|.|.+.+++.+.+.|....++|+||..|+.|||+|+..++|.|+-  ..++|.+-|.|++|+|+++|+
T Consensus        17 ~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpv--rP~~PAVgGnEGv~eVv~vGs   94 (354)
T KOG0025|consen   17 PARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPV--RPELPAVGGNEGVGEVVAVGS   94 (354)
T ss_pred             ccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCC--CCCCCcccCCcceEEEEEecC
Confidence            345789999999998788999999999988888999999999999999999999873  567899999999999999999


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      ++.+|++||+|+..
T Consensus        95 ~vkgfk~Gd~VIp~  108 (354)
T KOG0025|consen   95 NVKGFKPGDWVIPL  108 (354)
T ss_pred             CcCccCCCCeEeec
Confidence            99999999999865

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.76  E-value=6.5e-18  Score=115.27  Aligned_cols=85  Identities=24%  Similarity=0.198  Sum_probs=75.1

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      .||++++...+.+   +++++.+.|.+.++||+||+.++++|++|++...|...    ..+|.++|||++|+|+++|+++
T Consensus         2 ~~ka~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~----~~~p~i~G~e~~G~V~~vG~~v   74 (365)
T cd08277           2 KCKAAVAWEAGKP---LVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA----TLFPVILGHEGAGIVESVGEGV   74 (365)
T ss_pred             ccEEEEEccCCCC---cEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC----CCCCeecccceeEEEEeeCCCC
Confidence            3789988876554   88999999999999999999999999999999887643    3567899999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||+|++.
T Consensus        75 ~~~~~GdrV~~~   86 (365)
T cd08277          75 TNLKPGDKVIPL   86 (365)
T ss_pred             ccCCCCCEEEEC
Confidence            999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.76  E-value=9.6e-18  Score=113.24  Aligned_cols=84  Identities=21%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             EEEcccCCCC-cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCcc
Q 040376           10 VQYNSYGGGA-ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNF   88 (100)
Q Consensus        10 ~~~~~~~~~~-~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   88 (100)
                      +.+..++.+. ..+++++.|.|.|+++||+||+.++++|++|++...|.++   ....|.++|||++|+|+++|+++++|
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~~~   78 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLP---VHRPRVTPGHEVVGEVAGRGADAGGF   78 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCC---CCCCCccCCcceEEEEEEECCCCccc
Confidence            4566665541 4589999999999999999999999999999999988653   12346899999999999999999999


Q ss_pred             CCCCEEEe
Q 040376           89 CPSRTYFD   96 (100)
Q Consensus        89 ~~Gd~V~~   96 (100)
                      ++||+|+.
T Consensus        79 ~~Gd~V~~   86 (329)
T TIGR02822        79 AVGDRVGI   86 (329)
T ss_pred             CCCCEEEE
Confidence            99999974

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.75  E-value=1.1e-17  Score=113.90  Aligned_cols=85  Identities=14%  Similarity=0.139  Sum_probs=74.9

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      .++++++.++++.   +++++.+.|.|+++||+||+.++++|+.|++.+.|.+.   ...+|.++|||++|+|+++|+++
T Consensus         9 ~~~~~~~~~~~~~---~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~E~~G~Vv~vG~~v   82 (357)
T PLN02514          9 KTTGWAARDPSGH---LSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLG---MSNYPMVPGHEVVGEVVEVGSDV   82 (357)
T ss_pred             eEEEEEEecCCCC---ceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcC---cCCCCccCCceeeEEEEEECCCc
Confidence            4789998888765   88899999999999999999999999999998887653   22467899999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      ++|++||+|+.
T Consensus        83 ~~~~~Gd~V~~   93 (357)
T PLN02514         83 SKFTVGDIVGV   93 (357)
T ss_pred             ccccCCCEEEE
Confidence            99999999973

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.75  E-value=1.3e-17  Score=112.87  Aligned_cols=83  Identities=13%  Similarity=0.115  Sum_probs=67.9

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHh-CCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK-GQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~-g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .+|++++...    ..+++++.+.| +.++||+||+.++|||++|++.+. |.+.. ....+|.++|||++|+|+++  +
T Consensus         4 ~~~~~~~~~~----~~~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~-~~~~~p~v~GhE~~G~V~~v--~   75 (343)
T PRK09880          4 KTQSCVVAGK----KDVAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGN-FVIKAPMVLGHEVIGKIVHS--D   75 (343)
T ss_pred             cceEEEEecC----CceEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCccc-ccccCCcccCcccEEEEEEe--c
Confidence            4788888753    44888888887 688999999999999999999875 33221 12357899999999999999  6


Q ss_pred             CCccCCCCEEEe
Q 040376           85 FNNFCPSRTYFD   96 (100)
Q Consensus        85 v~~~~~Gd~V~~   96 (100)
                      +++|++||||+.
T Consensus        76 v~~~~vGdrV~~   87 (343)
T PRK09880         76 SSGLKEGQTVAI   87 (343)
T ss_pred             CccCCCCCEEEE
Confidence            889999999975

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.75  E-value=1.7e-17  Score=110.72  Aligned_cols=89  Identities=21%  Similarity=0.261  Sum_probs=76.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.+++.+.+.+++.+.+.|.+.++||+||+.++++|+.|+....|.++.  ....|.++|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~--~~~~p~~~G~e~~G~V~~~G~~v~   78 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGY--KPELPAIGGSEAVGVVDAVGEGVK   78 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCC--CCCCCCCCCcceEEEEEEeCCCCC
Confidence            689998876654245889999999999999999999999999999988876542  234578899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||+|+++
T Consensus        79 ~~~~Gd~V~~~   89 (324)
T cd08292          79 GLQVGQRVAVA   89 (324)
T ss_pred             CCCCCCEEEec
Confidence            99999999876

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.75  E-value=1.7e-17  Score=113.86  Aligned_cols=86  Identities=13%  Similarity=0.128  Sum_probs=72.1

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      .||+.+...+.+ +.+...+.+.|.|+++||+||+.++++|++|++.+.|.+.   ...+|.++|||++|+|+++|++++
T Consensus         5 ~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~---~~~~p~i~GhE~aG~Vv~vG~~v~   80 (375)
T PLN02178          5 NKAFGWAANDES-GVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWG---FSRYPIIPGHEIVGIATKVGKNVT   80 (375)
T ss_pred             ceeEEEEEccCC-CCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCC---CCCCCcccCceeeEEEEEECCCCC
Confidence            466666555554 5588888888899999999999999999999999887653   224678999999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      +|++||||..
T Consensus        81 ~~~vGdrV~~   90 (375)
T PLN02178         81 KFKEGDRVGV   90 (375)
T ss_pred             ccCCCCEEEE
Confidence            9999999973

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.73  E-value=2.6e-17  Score=113.94  Aligned_cols=87  Identities=20%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHH-hCCCCCCC---CCCCCccccccceEEEEeec
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQ-KGQLRPFL---PRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~-~g~~~~~~---~~~~p~~~G~e~~G~V~~vG   82 (100)
                      ||++++.++    ..+++++.+.|.++++||+||+.++|+|++|++.+ .|...+..   ...+|.++|||++|+|+++|
T Consensus         3 ~~a~~~~~~----~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG   78 (410)
T cd08238           3 TKAWRMYGK----GDLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVG   78 (410)
T ss_pred             cEEEEEEcC----CceEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeC
Confidence            688888764    34889999999999999999999999999999976 44321100   12468899999999999999


Q ss_pred             CCCC-ccCCCCEEEee
Q 040376           83 ESFN-NFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~-~~~~Gd~V~~~   97 (100)
                      ++++ +|++||||+..
T Consensus        79 ~~v~~~~~vGdrV~~~   94 (410)
T cd08238          79 KKWQGKYKPGQRFVIQ   94 (410)
T ss_pred             CCccCCCCCCCEEEEc
Confidence            9998 69999999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.73  E-value=3.1e-17  Score=110.12  Aligned_cols=86  Identities=23%  Similarity=0.351  Sum_probs=74.9

Q ss_pred             eeEEEccc---CCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            8 HAVQYNSY---GGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         8 ka~~~~~~---~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      ||+++.++   +.+ +.++..+.|.|.+.++||+||+.++++|+.|+....+..+   ...+|.++|+|++|+|+++|++
T Consensus         1 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~   76 (336)
T TIGR02817         1 KAVGYKKPLPITDP-DALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAP---EAGQPKILGWDAAGVVVAVGDE   76 (336)
T ss_pred             CceeeccccCCCCc-ccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCC---CCCCCcccceeeEEEEEEeCCC
Confidence            57788876   665 7899999999999999999999999999999988877543   2346789999999999999999


Q ss_pred             CCccCCCCEEEee
Q 040376           85 FNNFCPSRTYFDV   97 (100)
Q Consensus        85 v~~~~~Gd~V~~~   97 (100)
                      ++.|++||+|+++
T Consensus        77 v~~~~~Gd~V~~~   89 (336)
T TIGR02817        77 VTLFKPGDEVWYA   89 (336)
T ss_pred             CCCCCCCCEEEEc
Confidence            9999999999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.73  E-value=2.6e-17  Score=111.52  Aligned_cols=83  Identities=10%  Similarity=0.029  Sum_probs=67.8

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCC-CCCCCccccccceEEEEeecCCCC
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFL-PRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |+++++.+    +++++++.+.|. +++||+||++++|||++|++.+.|.+.+.. ...+|.++|||++|+|+++|.+  
T Consensus         4 ~~~~~~~~----~~~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           4 QVYRLVRP----KFFEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             cceEEecc----ceEEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            66777653    558999999984 999999999999999999999988653211 1357899999999999998764  


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||||+..
T Consensus        77 ~~~vGdrV~~~   87 (341)
T cd08237          77 TYKVGTKVVMV   87 (341)
T ss_pred             ccCCCCEEEEC
Confidence            79999999763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.72  E-value=8.6e-17  Score=108.24  Aligned_cols=88  Identities=20%  Similarity=0.293  Sum_probs=75.9

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.+++.+   +++.+.+.|.+.+++++|++.++++|+.|+....|.+.......+|.++|+|++|+|+++|+++.
T Consensus         1 ~ka~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~   77 (340)
T cd05284           1 MKAARLYEYGKP---LRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD   77 (340)
T ss_pred             CeeeEeccCCCC---ceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCC
Confidence            689999877654   88888888899999999999999999999999887654222445678999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        78 ~~~~Gd~V~~~   88 (340)
T cd05284          78 GLKEGDPVVVH   88 (340)
T ss_pred             cCcCCCEEEEc
Confidence            99999999865

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.72  E-value=8.8e-17  Score=108.24  Aligned_cols=92  Identities=21%  Similarity=0.257  Sum_probs=76.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCC-CcEEEEEeEeeeChhhHHHHhCCCCCCCC--CCCCccccccceEEEEeecC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSK-DEVLLKLEATALNPVDWKIQKGQLRPFLP--RKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~-~ev~v~v~~~~l~~~d~~~~~g~~~~~~~--~~~p~~~G~e~~G~V~~vG~   83 (100)
                      |||+++.+.+.+.+.+.+++.+.|.|.+ ++|+||+.++++|+.|+....|..+....  ...|.++|+|++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            7999998877653468899999998887 99999999999999999988876532101  01567899999999999999


Q ss_pred             CCCccCCCCEEEeec
Q 040376           84 SFNNFCPSRTYFDVY   98 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~~   98 (100)
                      ++..|++||+|++..
T Consensus        81 ~v~~~~~Gd~V~~~~   95 (341)
T cd08290          81 GVKSLKPGDWVIPLR   95 (341)
T ss_pred             CCCCCCCCCEEEecC
Confidence            999999999999763

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.71  E-value=1.1e-16  Score=109.16  Aligned_cols=84  Identities=19%  Similarity=0.246  Sum_probs=74.2

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++.+++.+   +++++.+.|.+.++||+||+.++++|+.|+....+.++    ...|.++|+|++|+|+++|+++
T Consensus         2 ~~~a~~~~~~~~~---~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~----~~~p~v~G~e~~G~V~~vG~~v   74 (365)
T cd08278           2 KTTAAVVREPGGP---FVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP----TPLPAVLGHEGAGVVEAVGSAV   74 (365)
T ss_pred             ccEEeeeccCCCc---ceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC----CCCCcccccceeEEEEEeCCCc
Confidence            4799999886554   78889999999999999999999999999999887653    3457899999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      .+|++||+|++
T Consensus        75 ~~~~~Gd~V~~   85 (365)
T cd08278          75 TGLKPGDHVVL   85 (365)
T ss_pred             ccCCCCCEEEE
Confidence            99999999985

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.71  E-value=1.7e-16  Score=107.13  Aligned_cols=88  Identities=19%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.+.+   +.+++.+.+.|.|.++||+||+.++++|+.|+.++.+.........+|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~---~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~   77 (341)
T PRK05396          1 MKALVKLKAE---PGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVT   77 (341)
T ss_pred             CceEEEecCC---CceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCC
Confidence            6889887755   3499999999999999999999999999999987765321101224567899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        78 ~~~~Gd~V~~~   88 (341)
T PRK05396         78 GFKVGDRVSGE   88 (341)
T ss_pred             cCCCCCEEEEC
Confidence            99999999875

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.70  E-value=1.4e-16  Score=108.22  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=73.8

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      |++++.+++.   .+++++.+.|.|.++||+||+.++++|+.|+....|.++   ...+|.++|+|++|+|+++|++++.
T Consensus         2 ka~~~~~~~~---~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~~   75 (361)
T cd08231           2 RAAVLTGPGK---PLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRP---RVPLPIILGHEGVGRVVALGGGVTT   75 (361)
T ss_pred             eEEEEcCCCC---CCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCC---CCCCCcccccCCceEEEEeCCCccc
Confidence            7888888664   389999999999999999999999999999999888653   1356789999999999999999986


Q ss_pred             ------cCCCCEEEee
Q 040376           88 ------FCPSRTYFDV   97 (100)
Q Consensus        88 ------~~~Gd~V~~~   97 (100)
                            |++||+|+++
T Consensus        76 ~~~~~~~~~Gd~V~~~   91 (361)
T cd08231          76 DVAGEPLKVGDRVTWS   91 (361)
T ss_pred             cccCCccCCCCEEEEc
Confidence                  9999999876

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.70  E-value=1.7e-16  Score=107.47  Aligned_cols=83  Identities=19%  Similarity=0.223  Sum_probs=69.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ||++++++++    .+++.+.+.|.| .++||+||+.++++|++|+.......    ...+|.++|||++|+|+++|+++
T Consensus         1 Mka~~~~~~~----~~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~----~~~~p~i~G~e~~G~V~~vG~~v   72 (347)
T PRK10309          1 MKSVVNDTDG----IVRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG----AHYYPITLGHEFSGYVEAVGSGV   72 (347)
T ss_pred             CceEEEeCCC----ceEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC----CCCCCcccccceEEEEEEeCCCC
Confidence            6899988643    388899999987 58999999999999999987543211    11357899999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||+|+++
T Consensus        73 ~~~~vGd~V~~~   84 (347)
T PRK10309         73 DDLHPGDAVACV   84 (347)
T ss_pred             CCCCCCCEEEEC
Confidence            999999999875

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.70  E-value=1.9e-16  Score=106.14  Aligned_cols=88  Identities=18%  Similarity=0.255  Sum_probs=77.7

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +||++.+.+++.+ ..+++++.+.|.+.++||+||+.++++|+.|+....+.++   ...+|.++|+|++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~vG~~v   76 (327)
T PRK10754          1 MAKRIEFHKHGGP-EVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYP---PPSLPSGLGTEAAGVVSKVGSGV   76 (327)
T ss_pred             CceEEEEeccCCh-hHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCC---CCCCCCccCcceEEEEEEeCCCC
Confidence            5899999988876 8899999999999999999999999999999988877653   22357789999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      +.+++||+|++.
T Consensus        77 ~~~~~Gd~V~~~   88 (327)
T PRK10754         77 KHIKVGDRVVYA   88 (327)
T ss_pred             CCCCCCCEEEEC
Confidence            999999999754

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.70  E-value=1.7e-16  Score=108.79  Aligned_cols=85  Identities=21%  Similarity=0.210  Sum_probs=74.9

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +||++++...++.   +++++.+.|.+.++||+||+.++++|++|++...|.+.    ..+|.++|||++|+|+++|+++
T Consensus         7 ~~~a~~~~~~~~~---~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~----~~~p~v~G~e~~G~V~~vG~~v   79 (373)
T cd08299           7 KCKAAVLWEPKKP---FSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV----TPFPVILGHEAAGIVESVGEGV   79 (373)
T ss_pred             eeEEEEEecCCCC---cEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC----CCCCccccccceEEEEEeCCCC
Confidence            5889888876554   88899999999999999999999999999999887642    2467899999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      +.|++||+|+++
T Consensus        80 ~~~~~Gd~V~~~   91 (373)
T cd08299          80 TTVKPGDKVIPL   91 (373)
T ss_pred             ccCCCCCEEEEC
Confidence            999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK10083 putative oxidoreductase; Provisional

Probab=99.70  E-value=1.9e-16  Score=106.68  Aligned_cols=82  Identities=21%  Similarity=0.238  Sum_probs=72.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.++    ..+++++.+.|.|.++|++||+.++++|+.|+....|.++   ...+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~----~~~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v~   73 (339)
T PRK10083          1 MKSIVIEKP----NSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNP---FAKYPRVIGHEFFGVIDAVGEGVD   73 (339)
T ss_pred             CeEEEEecC----CeeEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCC---cCCCCcccccceEEEEEEECCCCc
Confidence            688888764    4488999999999999999999999999999998877653   224688999999999999999999


Q ss_pred             ccCCCCEEE
Q 040376           87 NFCPSRTYF   95 (100)
Q Consensus        87 ~~~~Gd~V~   95 (100)
                      .|++||+|+
T Consensus        74 ~~~~Gd~V~   82 (339)
T PRK10083         74 AARIGERVA   82 (339)
T ss_pred             cCCCCCEEE
Confidence            999999997

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.70  E-value=2.5e-16  Score=106.13  Aligned_cols=84  Identities=30%  Similarity=0.340  Sum_probs=73.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.++++.   +++++.+.|.+.++||+|++.++++|+.|+....|..+   ...+|.++|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~v~~vG~~v~   74 (333)
T cd08296           1 YKAVQVTEPGGP---LELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMP---GLSYPRVPGHEVVGRIDAVGEGVS   74 (333)
T ss_pred             CeEEEEccCCCC---ceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCC---CCCCCcccCcceeEEEEEECCCCc
Confidence            799999876543   88899999999999999999999999999998887553   224578899999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      +|++||+|++
T Consensus        75 ~~~~Gd~V~~   84 (333)
T cd08296          75 RWKVGDRVGV   84 (333)
T ss_pred             cCCCCCEEEe
Confidence            9999999976

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.70  E-value=1.2e-16  Score=108.96  Aligned_cols=84  Identities=21%  Similarity=0.171  Sum_probs=66.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCc-cccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPC-IPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~-~~G~e~~G~V~~vG~~v   85 (100)
                      |+++++......   .++++.+.|.+.++||+||+.++|||.+|++.+++..+   ....+. ++|||++|+|+++| .+
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~---~~~~~~~i~GHE~~G~V~evG-~~   73 (350)
T COG1063           1 MKAAVVYVGGGD---VRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEP---FVPPGDIILGHEFVGEVVEVG-VV   73 (350)
T ss_pred             CceeEEEecCCc---cccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCC---CCCCCCcccCccceEEEEEec-cc
Confidence            566666654432   33666666678999999999999999999999998754   223334 99999999999999 77


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      +.|++||||..-
T Consensus        74 ~~~~~GdrVvv~   85 (350)
T COG1063          74 RGFKVGDRVVVE   85 (350)
T ss_pred             cCCCCCCEEEEC
Confidence            889999999764

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.70  E-value=1.9e-16  Score=107.32  Aligned_cols=86  Identities=17%  Similarity=0.150  Sum_probs=71.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCC--CC------CCCCCCccccccceEEE
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLR--PF------LPRKFPCIPGILVLPLI   78 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~--~~------~~~~~p~~~G~e~~G~V   78 (100)
                      |||+++.++    +.+++++.+.|.|.++||+||+.++++|+.|+....+...  +.      .....|.++|+|++|+|
T Consensus         1 mka~~~~~~----~~l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V   76 (351)
T cd08233           1 MKAARYHGR----KDIRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVV   76 (351)
T ss_pred             CceEEEecC----CceEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEE
Confidence            789998763    4488999999999999999999999999999987654311  00      01236789999999999


Q ss_pred             EeecCCCCccCCCCEEEe
Q 040376           79 FCELESFNNFCPSRTYFD   96 (100)
Q Consensus        79 ~~vG~~v~~~~~Gd~V~~   96 (100)
                      +++|+++++|++||+|++
T Consensus        77 ~~vG~~v~~~~~Gd~V~~   94 (351)
T cd08233          77 VEVGSGVTGFKVGDRVVV   94 (351)
T ss_pred             EEeCCCCCCCCCCCEEEE
Confidence            999999999999999986

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.70  E-value=4e-16  Score=104.54  Aligned_cols=90  Identities=20%  Similarity=0.232  Sum_probs=78.0

Q ss_pred             ceeeEEEcccCC--CCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            6 LMHAVQYNSYGG--GAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         6 ~~ka~~~~~~~~--~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      .||++++.+++.  + +.+++++.+.|.+.++|++|++.++++|+.|+....|.+..  ...+|.++|+|++|+|+++|+
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~--~~~~p~~~g~e~~G~v~~vG~   77 (329)
T cd08250           1 SFRKLVVHRLSPNFR-EATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDP--GVKPPFDCGFEGVGEVVAVGE   77 (329)
T ss_pred             CceEEEeccCCCCcc-cCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCC--CCCCCcccCceeEEEEEEECC
Confidence            389999998766  4 66899999999999999999999999999999988876532  235678999999999999999


Q ss_pred             CCCccCCCCEEEeec
Q 040376           84 SFNNFCPSRTYFDVY   98 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~~   98 (100)
                      +++.|++||+|+++.
T Consensus        78 ~v~~~~~Gd~V~~~~   92 (329)
T cd08250          78 GVTDFKVGDAVATMS   92 (329)
T ss_pred             CCCCCCCCCEEEEec
Confidence            999999999999763

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.69  E-value=1.7e-16  Score=107.09  Aligned_cols=79  Identities=10%  Similarity=0.010  Sum_probs=62.6

Q ss_pred             CcceEEeeccCCCCC-CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376           19 AADLKHVELPVPTPS-KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        19 ~~~~~~~~~~~p~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      ++.+++.+.+.|.|. +|||+|||+|+||||.|+.............++|.++|+|++|+|+++|+++++|++||+|+++
T Consensus        20 ~~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   99 (345)
T cd08293          20 AENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF   99 (345)
T ss_pred             ccceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec
Confidence            367899999999874 9999999999999999964332111100123467889999999999999999999999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.69  E-value=3.4e-16  Score=106.04  Aligned_cols=84  Identities=17%  Similarity=0.181  Sum_probs=72.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+.+    .+.+.+.+.|.+.++||+||+.++++|+.|++...+.+.   ....|.++|+|++|+|+++|++++
T Consensus         1 mka~~~~~~~----~~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~---~~~~~~~~G~e~~G~V~~vG~~v~   73 (351)
T cd08285           1 MKAFAMLGIG----KVGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAP---GERHGMILGHEAVGVVEEVGSEVK   73 (351)
T ss_pred             CceEEEccCC----ccEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCC---CCCCCcccCcceEEEEEEecCCcC
Confidence            7899998754    367888888889999999999999999999998877643   235578999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||+|++.
T Consensus        74 ~~~~Gd~V~~~   84 (351)
T cd08285          74 DFKPGDRVIVP   84 (351)
T ss_pred             ccCCCCEEEEc
Confidence            99999999873

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.69  E-value=4.3e-16  Score=104.12  Aligned_cols=86  Identities=27%  Similarity=0.326  Sum_probs=74.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++...+   +.+.+.+.+.|.+.+++|+|++.++++|+.|+....|.++   ....|.++|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~---~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~G~~v~   74 (332)
T cd08259           1 MKAAILHKPN---KPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFP---RGKYPLILGHEIVGTVEEVGEGVE   74 (332)
T ss_pred             CeEEEEecCC---CceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCC---CCCCCeeccccceEEEEEECCCCc
Confidence            6888887633   4488899999999999999999999999999999887654   234578999999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      .|++||+|+++.
T Consensus        75 ~~~~Gd~V~~~~   86 (332)
T cd08259          75 RFKPGDRVILYY   86 (332)
T ss_pred             cCCCCCEEEECC
Confidence            999999999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.69  E-value=6.6e-16  Score=103.27  Aligned_cols=90  Identities=27%  Similarity=0.387  Sum_probs=76.6

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ||||+++.+.+.. ..+.+++.+.|.+.++|++||+.++++|+.|+....+.+..  ....|.++|+|++|+|+++|+++
T Consensus         1 ~m~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vG~~v   77 (334)
T PTZ00354          1 MMRAVTLKGFGGV-DVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP--PPGSSEILGLEVAGYVEDVGSDV   77 (334)
T ss_pred             CcEEEEEEecCCC-cceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEeCCCC
Confidence            5999999987765 66888888888889999999999999999999888775431  23446789999999999999999


Q ss_pred             CccCCCCEEEeec
Q 040376           86 NNFCPSRTYFDVY   98 (100)
Q Consensus        86 ~~~~~Gd~V~~~~   98 (100)
                      +.|++||+|+++.
T Consensus        78 ~~~~~Gd~V~~~~   90 (334)
T PTZ00354         78 KRFKEGDRVMALL   90 (334)
T ss_pred             CCCCCCCEEEEec
Confidence            9999999999863

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.68  E-value=4e-16  Score=107.26  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=73.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      |||+++.+.    +.+++.+.+.|.| .+++|+||+.++++|++|+....|.++.   .++|.++|+|++|+|+++|+++
T Consensus         1 m~a~~~~~~----~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~p~~~G~e~~G~V~~vG~~v   73 (386)
T cd08283           1 MKALVWHGK----GDVRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG---MKKGDILGHEFMGVVEEVGPEV   73 (386)
T ss_pred             CeeEEEecC----CCceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC---CCCCccccccceEEEEEeCCCC
Confidence            788888743    5588999999888 4999999999999999999999887642   3467899999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||+|+++
T Consensus        74 ~~~~~Gd~V~~~   85 (386)
T cd08283          74 RNLKVGDRVVVP   85 (386)
T ss_pred             CCCCCCCEEEEc
Confidence            999999999875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.68  E-value=9.2e-16  Score=102.33  Aligned_cols=91  Identities=20%  Similarity=0.278  Sum_probs=75.8

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+.+++.+.+ ..+.+.+.+.|.+.+++|+|++.++++|+.|+....|.........+|.++|+|++|+|+++|+++.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~   79 (324)
T cd08244           1 MRAIRLHEFGPP-EVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD   79 (324)
T ss_pred             CeEEEEcCCCCc-cceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence            689998876665 6678877777778999999999999999999998877643212234578899999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      .|++||+|+++.
T Consensus        80 ~~~~Gd~V~~~~   91 (324)
T cd08244          80 PAWLGRRVVAHT   91 (324)
T ss_pred             CCCCCCEEEEcc
Confidence            999999999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.68  E-value=5.4e-16  Score=105.68  Aligned_cols=84  Identities=20%  Similarity=0.240  Sum_probs=74.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+++.+   +++.+.+.|.+.+++|+|++.++++|+.|+....|.++    ..+|.++|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v~   73 (363)
T cd08279           1 MRAAVLHEVGKP---LEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP----APLPAVLGHEGAGVVEEVGPGVT   73 (363)
T ss_pred             CeEEEEecCCCC---ceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC----CCCCccccccceEEEEEeCCCcc
Confidence            799999987755   88889999999999999999999999999998887653    34567899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        74 ~~~~Gd~V~~~   84 (363)
T cd08279          74 GVKPGDHVVLS   84 (363)
T ss_pred             ccCCCCEEEEC
Confidence            99999999984

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.67  E-value=7.3e-16  Score=103.53  Aligned_cols=85  Identities=28%  Similarity=0.362  Sum_probs=74.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.+++.+   +++++.+.|.+.++|++|++.++++|+.|+....|.++   ..++|.++|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~v~~~g~~~~   74 (334)
T PRK13771          1 MKAVILPGFKQG---YRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYP---RMKYPVILGHEVVGTVEEVGENVK   74 (334)
T ss_pred             CeeEEEcCCCCC---cEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCC---CCCCCeeccccceEEEEEeCCCCc
Confidence            689998877654   88999999999999999999999999999988877653   235578899999999999999998


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        75 ~~~~G~~V~~~   85 (334)
T PRK13771         75 GFKPGDRVASL   85 (334)
T ss_pred             cCCCCCEEEEC
Confidence            89999999886

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.67  E-value=7.4e-16  Score=103.87  Aligned_cols=83  Identities=18%  Similarity=0.207  Sum_probs=72.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ||++++.++    +.+.+.+.+.|.| .+++|+||+.++++|+.|+....|.++   ...+|.++|+|++|+|+++|+++
T Consensus         1 ~ka~~~~~~----~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~v   73 (347)
T cd05278           1 MKALVYLGP----GKIGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVP---GAKHGMILGHEFVGEVVEVGSDV   73 (347)
T ss_pred             CceEEEecC----CceEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC---CCCCCceeccceEEEEEEECCCc
Confidence            688888764    3478889999999 899999999999999999999888764   24567899999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      ++|++||+|++
T Consensus        74 ~~~~~Gd~V~~   84 (347)
T cd05278          74 KRLKPGDRVSV   84 (347)
T ss_pred             cccCCCCEEEe
Confidence            99999999987

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.67  E-value=1e-15  Score=102.18  Aligned_cols=86  Identities=21%  Similarity=0.285  Sum_probs=73.9

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++++ +.+++++.+.|.+.+++|+|++.++++|+.|+....|.++.  ...+|.++|+|++|+|+++  +++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~--~~~   75 (325)
T cd05280           1 FKALVVEEQDGG-VSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGV--TRNYPHTPGIDAAGTVVSS--DDP   75 (325)
T ss_pred             CceEEEcccCCC-CcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCC--CCCCCCccCcccEEEEEEe--CCC
Confidence            789999988764 67999999999999999999999999999999998876531  2345778999999999998  467


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|++.
T Consensus        76 ~~~~Gd~V~~~   86 (325)
T cd05280          76 RFREGDEVLVT   86 (325)
T ss_pred             CCCCCCEEEEc
Confidence            89999999874

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.67  E-value=8.5e-16  Score=104.01  Aligned_cols=88  Identities=22%  Similarity=0.208  Sum_probs=73.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCC---------CCCCCCccccccceEE
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF---------LPRKFPCIPGILVLPL   77 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~---------~~~~~p~~~G~e~~G~   77 (100)
                      ||++++...+.+   +++.+.+.|++.++||+|++.++++|+.|++...+.++..         ....+|.++|+|++|+
T Consensus         1 ~~a~~~~~~~~~---~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~   77 (350)
T cd08240           1 MKAAAVVEPGKP---LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGE   77 (350)
T ss_pred             CeeEEeccCCCC---ceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEE
Confidence            789988876654   7888999999999999999999999999999988754210         0123467899999999


Q ss_pred             EEeecCCCCccCCCCEEEee
Q 040376           78 IFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        78 V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      |+++|++++.|++||+|+++
T Consensus        78 V~~vG~~v~~~~~Gd~V~~~   97 (350)
T cd08240          78 VVAVGPDAADVKVGDKVLVY   97 (350)
T ss_pred             EEeeCCCCCCCCCCCEEEEC
Confidence            99999999999999999875

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.67  E-value=5.7e-16  Score=105.16  Aligned_cols=81  Identities=10%  Similarity=0.110  Sum_probs=66.8

Q ss_pred             EEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccC
Q 040376           10 VQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFC   89 (100)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   89 (100)
                      +++.+++.+   +++++.+.|.+.++||+||+.++++|++|++...+.+..  ...+|.++|||++|+|+++|+++..+ 
T Consensus         2 ~~~~~~g~~---~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~--~~~~p~i~GhE~~G~V~~vG~~v~~~-   75 (349)
T TIGR03201         2 WMMTEPGKP---MVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRT--NHALPLALGHEISGRVIQAGAGAASW-   75 (349)
T ss_pred             ceEecCCCC---ceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCc--cCCCCeeccccceEEEEEeCCCcCCC-
Confidence            345555544   788899999999999999999999999999887544321  23568899999999999999999887 


Q ss_pred             CCCEEEe
Q 040376           90 PSRTYFD   96 (100)
Q Consensus        90 ~Gd~V~~   96 (100)
                      +||+|+.
T Consensus        76 ~GdrV~~   82 (349)
T TIGR03201        76 IGKAVIV   82 (349)
T ss_pred             CCCEEEE
Confidence            9999976

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=1.3e-15  Score=102.83  Aligned_cols=84  Identities=24%  Similarity=0.376  Sum_probs=74.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+++.+   +++.+.+.|.+.+++++|++.++++|+.|+....|...   ...+|.++|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~~G~~~~   74 (345)
T cd08260           1 MRAAVYEEFGEP---LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDP---DVTLPHVPGHEFAGVVVEVGEDVS   74 (345)
T ss_pred             CeeEEEecCCCC---cEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCC---CCCCCeeeccceeEEEEEECCCCc
Confidence            799999887765   88889998999999999999999999999998887654   234578999999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      .|++||+|++
T Consensus        75 ~~~~Gd~V~~   84 (345)
T cd08260          75 RWRVGDRVTV   84 (345)
T ss_pred             cCCCCCEEEE
Confidence            9999999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.66  E-value=1.2e-15  Score=102.91  Aligned_cols=90  Identities=26%  Similarity=0.310  Sum_probs=72.5

Q ss_pred             eeeEEEcccCCCCcceEEee-ccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCC-----------------CCCCCCCc
Q 040376            7 MHAVQYNSYGGGAADLKHVE-LPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP-----------------FLPRKFPC   68 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~-~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-----------------~~~~~~p~   68 (100)
                      ||++.+...+.+ +.+.+.+ .+.|.+.+++|+||+.++++|+.|+....|.++.                 .....+|.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   79 (350)
T cd08274           1 MRAVLLTGHGGL-DKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPR   79 (350)
T ss_pred             CeEEEEeccCCc-cceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCc
Confidence            688888776654 5566654 4677789999999999999999999988775431                 01234678


Q ss_pred             cccccceEEEEeecCCCCccCCCCEEEee
Q 040376           69 IPGILVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        69 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      ++|||++|+|+++|+++++|++||+|++.
T Consensus        80 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~  108 (350)
T cd08274          80 IQGADIVGRVVAVGEGVDTARIGERVLVD  108 (350)
T ss_pred             ccCCcceEEEEEeCCCCCCCCCCCEEEEe
Confidence            99999999999999999999999999873

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.66  E-value=9.3e-16  Score=103.50  Aligned_cols=91  Identities=24%  Similarity=0.281  Sum_probs=74.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCC-------C-----CCCCCCcccccc
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRP-------F-----LPRKFPCIPGIL   73 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~-------~-----~~~~~p~~~G~e   73 (100)
                      |||+++.+++++.+.+.+++.+.|.| .++||+|++.++++|+.|+....|....       .     ....+|.++|+|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            78888888776523478889999999 4999999999999999999988764210       0     023457899999


Q ss_pred             ceEEEEeecCCCCccCCCCEEEee
Q 040376           74 VLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        74 ~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      ++|+|+++|+++++|++||+|+++
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~  104 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGA  104 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEe
Confidence            999999999999999999999875

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.66  E-value=1.9e-15  Score=101.16  Aligned_cols=88  Identities=23%  Similarity=0.306  Sum_probs=77.0

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      |++.+.+.+.+ +.+++++.+.|.|.+++++|++.++++|+.|+....|.+..  ...+|.++|+|++|+|+++|++++.
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~vG~~v~~   78 (331)
T cd08273           2 REVVVTRRGGP-EVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPD--QPPLPFTPGYDLVGRVDALGSGVTG   78 (331)
T ss_pred             eeEEEccCCCc-ccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCC--CCCCCcccccceEEEEEEeCCCCcc
Confidence            78888887776 78999999999999999999999999999999988876532  2246788999999999999999999


Q ss_pred             cCCCCEEEeec
Q 040376           88 FCPSRTYFDVY   98 (100)
Q Consensus        88 ~~~Gd~V~~~~   98 (100)
                      |++||+|+++.
T Consensus        79 ~~~Gd~V~~~~   89 (331)
T cd08273          79 FEVGDRVAALT   89 (331)
T ss_pred             CCCCCEEEEeC
Confidence            99999999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.66  E-value=1.2e-15  Score=103.11  Aligned_cols=84  Identities=20%  Similarity=0.211  Sum_probs=72.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ||++++.+.+    .+++++.+.|.| .++||+|++.++++|+.|+....|.+..   ..+|.++|+|++|+|+++|+++
T Consensus         1 m~a~~~~~~~----~~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~---~~~~~~~g~e~~G~V~~~G~~v   73 (345)
T cd08286           1 MKALVYHGPG----KISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT---VTPGRILGHEGVGVVEEVGSAV   73 (345)
T ss_pred             CceEEEecCC----ceeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC---CCCCceecccceEEEEEeccCc
Confidence            6888887643    488889999886 7999999999999999999998887542   2347899999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      +.|++||+|++.
T Consensus        74 ~~~~~Gd~V~~~   85 (345)
T cd08286          74 TNFKVGDRVLIS   85 (345)
T ss_pred             cccCCCCEEEEC
Confidence            999999999874

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=1.2e-15  Score=103.30  Aligned_cols=86  Identities=27%  Similarity=0.284  Sum_probs=71.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCC------CCCCCCccccccceEEEEe
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF------LPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~------~~~~~p~~~G~e~~G~V~~   80 (100)
                      |||+++.++    ..+++++.+.|++.+++|+||+.++++|+.|+....|.+...      ....+|.++|+|++|+|++
T Consensus         1 mka~~~~~~----~~~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~   76 (350)
T cd08256           1 MRAVVCHGP----QDYRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE   76 (350)
T ss_pred             CeeEEEecC----CceEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEE
Confidence            689998754    348899999999999999999999999999999887753110      0114577899999999999


Q ss_pred             ecCCCC--ccCCCCEEEe
Q 040376           81 ELESFN--NFCPSRTYFD   96 (100)
Q Consensus        81 vG~~v~--~~~~Gd~V~~   96 (100)
                      +|++++  +|++||+|++
T Consensus        77 vG~~v~~~~~~~Gd~V~~   94 (350)
T cd08256          77 LGEGAEERGVKVGDRVIS   94 (350)
T ss_pred             eCCCcccCCCCCCCEEEE
Confidence            999999  8999999987

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.66  E-value=1.7e-15  Score=101.29  Aligned_cols=86  Identities=23%  Similarity=0.298  Sum_probs=73.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||+++..+. .+ ..+++++.+.|.+.+++|+|++.++++|+.|+....+.+.   ....|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~---~~~~p~~~G~e~~G~V~~vG~~v~   75 (306)
T cd08258           1 MKALVKTGP-GP-GNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYD---PVETPVVLGHEFSGTIVEVGPDVE   75 (306)
T ss_pred             CeeEEEecC-CC-CceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCC---cCCCCeeeccceEEEEEEECCCcC
Confidence            578887763 33 5689999999999999999999999999999988877652   234568899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        76 ~~~~Gd~V~~~   86 (306)
T cd08258          76 GWKVGDRVVSE   86 (306)
T ss_pred             cCCCCCEEEEc
Confidence            99999999885

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.65  E-value=1.6e-15  Score=101.99  Aligned_cols=83  Identities=18%  Similarity=0.090  Sum_probs=71.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++++.+..   ..+++.+.|.+.++|++||+.++++|+.|+....|.++    ...|.++|+|++|+|+++|++++
T Consensus         1 mka~~~~~~~~~---~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~~G~~v~   73 (338)
T PRK09422          1 MKAAVVNKDHTG---DVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFG----DKTGRILGHEGIGIVKEVGPGVT   73 (338)
T ss_pred             CeEEEecCCCCC---ceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCC----CCCCccCCcccceEEEEECCCCc
Confidence            789999886554   33788899999999999999999999999998877643    12367899999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      .|++||+|++
T Consensus        74 ~~~~Gd~V~~   83 (338)
T PRK09422         74 SLKVGDRVSI   83 (338)
T ss_pred             cCCCCCEEEE
Confidence            9999999986

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.65  E-value=1.7e-15  Score=103.78  Aligned_cols=82  Identities=13%  Similarity=0.165  Sum_probs=71.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ||++++.++    ..+++++.+.|.+ .++|++||+.++++|+.|++...|.+.    ..+|.++|||++|+|+++|+++
T Consensus         1 m~~~~~~~~----~~~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~----~~~p~~~g~e~~G~V~~vG~~v   72 (375)
T cd08282           1 MKAVVYGGP----GNVAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG----AEPGLVLGHEAMGEVEEVGSAV   72 (375)
T ss_pred             CceEEEecC----CceeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC----CCCCceeccccEEEEEEeCCCC
Confidence            578887653    3488999999996 799999999999999999999887653    2457899999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      ..|++||+|++
T Consensus        73 ~~~~~Gd~V~~   83 (375)
T cd08282          73 ESLKVGDRVVV   83 (375)
T ss_pred             CcCCCCCEEEE
Confidence            99999999986

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.65  E-value=1.5e-15  Score=103.64  Aligned_cols=84  Identities=21%  Similarity=0.278  Sum_probs=73.5

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.+.+.+   +++.+.+.|.+.++||+|++.++++|+.|+....+.++    ..+|.++|+|++|+|+++|++++
T Consensus         1 ~~a~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~----~~~p~~~g~e~~G~v~~vG~~~~   73 (367)
T cd08263           1 MKAAVLKGPNPP---LTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP----FPPPFVLGHEISGEVVEVGPNVE   73 (367)
T ss_pred             CeeEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCC----CCCCcccccccceEEEEeCCCCC
Confidence            689999877544   78888898889999999999999999999998887653    25678999999999999999998


Q ss_pred             c---cCCCCEEEee
Q 040376           87 N---FCPSRTYFDV   97 (100)
Q Consensus        87 ~---~~~Gd~V~~~   97 (100)
                      +   |++||+|+++
T Consensus        74 ~~~~~~~Gd~V~~~   87 (367)
T cd08263          74 NPYGLSVGDRVVGS   87 (367)
T ss_pred             CCCcCCCCCEEEEc
Confidence            8   9999999884

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.65  E-value=2e-15  Score=101.70  Aligned_cols=87  Identities=23%  Similarity=0.273  Sum_probs=74.9

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+++ + ..+++.+.+.|.+.++|++|++.++++|+.|+....+.++.  ....+..+|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~-~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~vG~~~~   76 (341)
T cd08297           1 MKAAVVEEFG-E-KPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPV--KPKLPLIGGHEGAGVVVAVGPGVS   76 (341)
T ss_pred             CceEEeeccC-C-CCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCc--CCCCCccCCcccceEEEEeCCCCC
Confidence            7899998766 3 56899999999999999999999999999999988776542  234567889999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        77 ~~~~Gd~V~~~   87 (341)
T cd08297          77 GLKVGDRVGVK   87 (341)
T ss_pred             CCCCCCEEEEe
Confidence            99999999864

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.65  E-value=1.5e-15  Score=104.79  Aligned_cols=96  Identities=16%  Similarity=0.108  Sum_probs=75.9

Q ss_pred             cccceeeEEEcc--cCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCC------C-CCCCC-ccccc
Q 040376            3 GKPLMHAVQYNS--YGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF------L-PRKFP-CIPGI   72 (100)
Q Consensus         3 ~~~~~ka~~~~~--~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~------~-~~~~p-~~~G~   72 (100)
                      ++++|||+++..  ++++.+.+++.+.+.|.+.+++++|++.++++|+.|.+...+...+.      . ....| .++|+
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            356799999954  66654679999999999999999999999999999987765532110      0 01123 37999


Q ss_pred             cceEEEEeecCCCCccCCCCEEEeec
Q 040376           73 LVLPLIFCELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        73 e~~G~V~~vG~~v~~~~~Gd~V~~~~   98 (100)
                      |++|+|+++|++++.|++||+|++.+
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~  109 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASC  109 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEcc
Confidence            99999999999999999999998753

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.65  E-value=3.6e-15  Score=99.72  Aligned_cols=89  Identities=33%  Similarity=0.392  Sum_probs=76.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++...+.. +.+++++.+.|.+.++|++|++.++++|+.|+....|.+..  ....|.++|+|++|+|+++|+++.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~G~~~~   77 (336)
T cd08276           1 MKAWRLSGGGGL-DNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPP--PVKDPLIPLSDGAGEVVAVGEGVT   77 (336)
T ss_pred             CeEEEEeccCCC-cceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCC--CCCCCcccccceeEEEEEeCCCCc
Confidence            789999877654 66888888888889999999999999999999988776542  234678899999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      +|++||+|++..
T Consensus        78 ~~~~Gd~V~~~~   89 (336)
T cd08276          78 RFKVGDRVVPTF   89 (336)
T ss_pred             CCCCCCEEEEec
Confidence            999999998753

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.64  E-value=2.2e-15  Score=101.45  Aligned_cols=83  Identities=20%  Similarity=0.255  Sum_probs=72.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||++++++    ..+++.+.+.|.+.++|++|++.++++|+.|+....+.++.   ..+|.++|+|++|+|+++|++++
T Consensus         1 ~~a~~~~~~----~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~---~~~~~~~g~e~~G~V~~~G~~v~   73 (337)
T cd08261           1 MKALVCEKP----GRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF---ASYPRILGHELSGEVVEVGEGVA   73 (337)
T ss_pred             CeEEEEeCC----CceEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc---CCCCcccccccEEEEEEeCCCCC
Confidence            688888764    34888999999999999999999999999999998876542   24577899999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      .|++||+|++
T Consensus        74 ~~~~Gd~V~~   83 (337)
T cd08261          74 GLKVGDRVVV   83 (337)
T ss_pred             CCCCCCEEEE
Confidence            9999999987

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.64  E-value=8.3e-16  Score=103.88  Aligned_cols=86  Identities=33%  Similarity=0.436  Sum_probs=74.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++..++ + ..+++++.+.|.++++||+|++.++++|+.|+....+.+    ....+.++|+|++|+|+++|++++
T Consensus         1 m~a~~~~~~~-~-~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~   74 (339)
T cd08249           1 QKAAVLTGPG-G-GLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF----IPSYPAILGCDFAGTVVEVGSGVT   74 (339)
T ss_pred             CceEEeccCC-C-CcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc----ccCCCceeeeeeeEEEEEeCCCcC
Confidence            6899998876 4 778999999999999999999999999999988765543    123467899999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      .|++||+|+++.
T Consensus        75 ~~~~Gd~V~~~~   86 (339)
T cd08249          75 RFKVGDRVAGFV   86 (339)
T ss_pred             cCCCCCEEEEEe
Confidence            999999999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.64  E-value=2.3e-15  Score=101.42  Aligned_cols=84  Identities=27%  Similarity=0.303  Sum_probs=72.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++++++    .+.+++.+.|.+.+++|+|+++++++|+.|+....+.+.   ....|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~----~~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~---~~~~~~~~g~~~~G~V~~~G~~v~   73 (343)
T cd08235           1 MKAAVLHGPN----DVRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT---DLKPPRILGHEIAGEIVEVGDGVT   73 (343)
T ss_pred             CeEEEEecCC----ceEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc---cCCCCcccccceEEEEEeeCCCCC
Confidence            6899888754    388889999889999999999999999999998877653   224467899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        74 ~~~~Gd~V~~~   84 (343)
T cd08235          74 GFKVGDRVFVA   84 (343)
T ss_pred             CCCCCCEEEEc
Confidence            99999999976

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.64  E-value=3.2e-15  Score=99.83  Aligned_cols=88  Identities=28%  Similarity=0.338  Sum_probs=74.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++...+.+ ..+.+.+.+.|.+.+++|+|++.++++|+.|+....|....  ...+|.++|||++|+|+++|+++.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~G~~~~   77 (342)
T cd08266           1 MKAVVIRGHGGP-EVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI--KLPLPHILGSDGAGVVEAVGPGVT   77 (342)
T ss_pred             CeEEEEecCCCc-cceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCC--CCCCCeecccceEEEEEEeCCCCC
Confidence            688888765554 66888888888889999999999999999999988775431  235578999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|++.
T Consensus        78 ~~~~Gd~V~~~   88 (342)
T cd08266          78 NVKPGQRVVIY   88 (342)
T ss_pred             CCCCCCEEEEc
Confidence            99999999875

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.64  E-value=3.8e-15  Score=98.93  Aligned_cols=89  Identities=27%  Similarity=0.438  Sum_probs=76.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++...+.+ +.+.+++.+.|.+.+++|+|++.++++|+.|+....+...  .....|.++|+|++|+|+++|+++.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~v~~~G~~~~   77 (326)
T cd08272           1 MKALVLESFGGP-EVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAA--ARPPLPAILGCDVAGVVEAVGEGVT   77 (326)
T ss_pred             CeEEEEccCCCc-hheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCC--CCCCCCcccccceeEEEEEeCCCCC
Confidence            689999887765 6788888888888999999999999999999998777543  1234578899999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      +|++||+|++..
T Consensus        78 ~~~~Gd~V~~~~   89 (326)
T cd08272          78 RFRVGDEVYGCA   89 (326)
T ss_pred             CCCCCCEEEEcc
Confidence            999999999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.64  E-value=1.9e-15  Score=102.04  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=71.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ||+++++++    ..+++++.+.|.| .++||+||+.++++|+.|+....|.++    ...|.++|||++|+|+++|+++
T Consensus         1 m~~~~~~~~----~~~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v   72 (345)
T cd08287           1 MRATVIHGP----GDIRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP----TRAPAPIGHEFVGVVEEVGSEV   72 (345)
T ss_pred             CceeEEecC----CceeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC----CCCCcccccceEEEEEEeCCCC
Confidence            688888753    3488999999996 899999999999999999988877653    2347899999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      ..|++||+|++
T Consensus        73 ~~~~~Gd~V~~   83 (345)
T cd08287          73 TSVKPGDFVIA   83 (345)
T ss_pred             CccCCCCEEEe
Confidence            99999999987

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.64  E-value=2.8e-15  Score=101.06  Aligned_cols=86  Identities=14%  Similarity=0.083  Sum_probs=71.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCC------C--CCCCCCCccccccceEEE
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLR------P--FLPRKFPCIPGILVLPLI   78 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~------~--~~~~~~p~~~G~e~~G~V   78 (100)
                      |||+++...  .   +++++.+.|.+.+++|+|++.++++|+.|+....|...      .  .....+|.++|+|++|+|
T Consensus         1 m~a~~~~~~--~---~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V   75 (341)
T cd08262           1 MRAAVFRDG--P---LVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEV   75 (341)
T ss_pred             CceEEEeCC--c---eEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEE
Confidence            688888753  3   88899999999999999999999999999998877321      0  012235788999999999


Q ss_pred             EeecCCCCc-cCCCCEEEee
Q 040376           79 FCELESFNN-FCPSRTYFDV   97 (100)
Q Consensus        79 ~~vG~~v~~-~~~Gd~V~~~   97 (100)
                      +++|++++. |++||+|+++
T Consensus        76 ~~vG~~v~~~~~~Gd~V~~~   95 (341)
T cd08262          76 VDYGPGTERKLKVGTRVTSL   95 (341)
T ss_pred             EEeCCCCcCCCCCCCEEEec
Confidence            999999987 9999999986

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.64  E-value=4.8e-15  Score=97.98  Aligned_cols=89  Identities=24%  Similarity=0.343  Sum_probs=75.8

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.+.+.+ ..+++.+.+.|.+.+++++|++.++++|+.|+....+.+..  ...+|.++|+|++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vg~~~~   77 (323)
T cd05276           1 MKAIVIKEPGGP-EVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPP--PPGASDILGLEVAGVVVAVGPGVT   77 (323)
T ss_pred             CeEEEEecCCCc-ccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCC--CCCCCCcccceeEEEEEeeCCCCC
Confidence            789999877665 67888888877788999999999999999999888765431  334678999999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      .|++||+|+++.
T Consensus        78 ~~~~Gd~V~~~~   89 (323)
T cd05276          78 GWKVGDRVCALL   89 (323)
T ss_pred             CCCCCCEEEEec
Confidence            999999998863

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.64  E-value=4.3e-15  Score=99.28  Aligned_cols=86  Identities=22%  Similarity=0.251  Sum_probs=73.8

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+.+++ +.+++++.+.|.|.++|++|++.++++|+.|+....|.+..  ...+|.++|+|++|+|++  ++++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~--~~~~   75 (324)
T cd08288           1 FKALVLEKDDGG-TSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGI--VRTFPLVPGIDLAGTVVE--SSSP   75 (324)
T ss_pred             CeeEEEeccCCC-cceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccc--cCCCCCccccceEEEEEe--CCCC
Confidence            789999988776 78999999999999999999999999999999988775421  223567899999999999  7778


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        76 ~~~~Gd~V~~~   86 (324)
T cd08288          76 RFKPGDRVVLT   86 (324)
T ss_pred             CCCCCCEEEEC
Confidence            89999999875

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.63  E-value=3.7e-15  Score=100.05  Aligned_cols=82  Identities=28%  Similarity=0.434  Sum_probs=72.5

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+++    .+++.+.+.|++.++||+||++++++|+.|+....|.+..    .+|.++|+|++|+|+++|++++
T Consensus         1 ~~a~~~~~~~----~~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~----~~p~~~g~~~~G~v~~vG~~v~   72 (334)
T cd08234           1 MKALVYEGPG----ELEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA----APPLVPGHEFAGVVVAVGSKVT   72 (334)
T ss_pred             CeeEEecCCC----ceEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC----CCCcccccceEEEEEEeCCCCC
Confidence            6899887654    4888899999999999999999999999999988886542    3678999999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      .|++||+|++
T Consensus        73 ~~~~Gd~V~~   82 (334)
T cd08234          73 GFKVGDRVAV   82 (334)
T ss_pred             CCCCCCEEEE
Confidence            9999999986

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.63  E-value=2.7e-15  Score=101.24  Aligned_cols=82  Identities=13%  Similarity=0.205  Sum_probs=71.3

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      |++.++..+   +.+++.+.+.|.+.++|++||+.++++|+.|+....|.+.   ...+|.++|+|++|+|+++|+++++
T Consensus         1 ~~~~~~~~~---~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~V~~vG~~v~~   74 (337)
T cd05283           1 KGYAARDAS---GKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWG---PTKYPLVPGHEIVGIVVAVGSKVTK   74 (337)
T ss_pred             CceEEecCC---CCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcC---CCCCCcccCcceeeEEEEECCCCcc
Confidence            456666654   4599999999999999999999999999999999887653   3356889999999999999999999


Q ss_pred             cCCCCEEE
Q 040376           88 FCPSRTYF   95 (100)
Q Consensus        88 ~~~Gd~V~   95 (100)
                      |++||+|+
T Consensus        75 ~~~Gd~V~   82 (337)
T cd05283          75 FKVGDRVG   82 (337)
T ss_pred             cCCCCEEE
Confidence            99999997

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.63  E-value=2.9e-15  Score=102.31  Aligned_cols=83  Identities=22%  Similarity=0.241  Sum_probs=72.6

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      ||+++.+.+++   +++++.+.|.+.+++++|++.++++|+.|++...+.+.    ...|.++|+|++|+|+++|++++.
T Consensus         2 ~a~~~~~~~~~---~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~----~~~~~i~g~e~~G~V~~vG~~v~~   74 (365)
T cd05279           2 KAAVLWEKGKP---LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP----TPLPVILGHEGAGIVESIGPGVTT   74 (365)
T ss_pred             ceeEEecCCCC---cEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC----CCCCcccccceeEEEEEeCCCccc
Confidence            67777776554   88999999999999999999999999999998887643    245689999999999999999999


Q ss_pred             cCCCCEEEee
Q 040376           88 FCPSRTYFDV   97 (100)
Q Consensus        88 ~~~Gd~V~~~   97 (100)
                      |++||+|++.
T Consensus        75 ~~~Gd~Vv~~   84 (365)
T cd05279          75 LKPGDKVIPL   84 (365)
T ss_pred             CCCCCEEEEc
Confidence            9999999876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.63  E-value=4.8e-15  Score=98.23  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.+.+ + ..+++.+.+.|.+.++|++|++.++++|+.|+......       ..+.++|+|++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~-~-~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-------~~~~~~g~e~~G~v~~~G~~v~   71 (305)
T cd08270           1 MRALVVDPDA-P-LRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-------PDGAVPGWDAAGVVERAAADGS   71 (305)
T ss_pred             CeEEEEccCC-C-ceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-------CCCCcccceeEEEEEEeCCCCC
Confidence            6888887754 5 67888899999999999999999999999999876521       2256899999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      .|++||+|+++.
T Consensus        72 ~~~~Gd~V~~~~   83 (305)
T cd08270          72 GPAVGARVVGLG   83 (305)
T ss_pred             CCCCCCEEEEec
Confidence            999999999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.63  E-value=5.1e-15  Score=98.98  Aligned_cols=85  Identities=20%  Similarity=0.219  Sum_probs=73.0

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      ||+++...+++ +.+++++.+.|.+.+++|+||+.++++|+.|+....|.+..  ....|.++|+|++|+|++  .++..
T Consensus         1 ~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~V~~--~~~~~   75 (323)
T TIGR02823         1 KALVVEKEDGK-VSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGV--VRSYPMIPGIDAAGTVVS--SEDPR   75 (323)
T ss_pred             CeEEEccCCCC-cceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCC--CCCCCccceeeeEEEEEe--cCCCC
Confidence            67888887776 78999999999999999999999999999999988876531  234578899999999998  56778


Q ss_pred             cCCCCEEEee
Q 040376           88 FCPSRTYFDV   97 (100)
Q Consensus        88 ~~~Gd~V~~~   97 (100)
                      |++||+|+++
T Consensus        76 ~~~Gd~V~~~   85 (323)
T TIGR02823        76 FREGDEVIVT   85 (323)
T ss_pred             CCCCCEEEEc
Confidence            9999999875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.63  E-value=4.6e-15  Score=98.27  Aligned_cols=89  Identities=28%  Similarity=0.447  Sum_probs=75.8

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++...+.+ +.+.+.+.+.|.+.+++++|++.++++|+.|+....|.+..  ....|.++|+|++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~   77 (325)
T cd08253           1 MRAIRYHEFGAP-DVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPG--LPPLPYVPGSDGAGVVEAVGEGVD   77 (325)
T ss_pred             CceEEEcccCCc-ccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCC--CCCCCeecccceEEEEEeeCCCCC
Confidence            678888876654 66888899988899999999999999999999887775532  235678899999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      +|++||+|+++.
T Consensus        78 ~~~~Gd~v~~~~   89 (325)
T cd08253          78 GLKVGDRVWLTN   89 (325)
T ss_pred             CCCCCCEEEEec
Confidence            999999999863

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.63  E-value=3.9e-15  Score=100.40  Aligned_cols=83  Identities=20%  Similarity=0.198  Sum_probs=72.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++.+    .+.+++.+.|++.++|++|++.++++|+.|+....+.+.    ...|.++|+|++|+|+++|+++.
T Consensus         1 ~~a~~~~~~~----~l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~----~~~~~~~g~~~~G~V~~~g~~v~   72 (343)
T cd08236           1 MKALVLTGPG----DLRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA----YHPPLVLGHEFSGTVEEVGSGVD   72 (343)
T ss_pred             CeeEEEecCC----ceeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC----CCCCcccCcceEEEEEEECCCCC
Confidence            6899998753    378888999999999999999999999999998877542    23467899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        73 ~~~~Gd~V~~~   83 (343)
T cd08236          73 DLAVGDRVAVN   83 (343)
T ss_pred             cCCCCCEEEEc
Confidence            99999999986

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.62  E-value=5.7e-15  Score=99.01  Aligned_cols=86  Identities=26%  Similarity=0.307  Sum_probs=74.9

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++.+..++.+ . +.+.+.+.|.+.+++|+|++.++++|+.|+....|.+..  ...+|.++|+|++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~--~~~~~~~~g~~~~G~v~~~G~~v~   76 (338)
T cd08254           1 MKAWRFHKGSKG-L-LVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPT--LTKLPLTLGHEIAGTVVEVGAGVT   76 (338)
T ss_pred             CeeEEEecCCCC-c-eEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcc--cCCCCEeccccccEEEEEECCCCc
Confidence            789999887766 4 777888888899999999999999999999998876541  335578899999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      .|++||+|++
T Consensus        77 ~~~~Gd~V~~   86 (338)
T cd08254          77 NFKVGDRVAV   86 (338)
T ss_pred             cCCCCCEEEE
Confidence            9999999986

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd05281 TDH Threonine dehydrogenase

Probab=99.62  E-value=5.7e-15  Score=99.77  Aligned_cols=88  Identities=25%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||+++++..+..   +++.+.+.|.|.++|++|++.++++|+.|+.+..+..........|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~   77 (341)
T cd05281           1 MKAIVKTKAGPG---AELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVT   77 (341)
T ss_pred             CcceEEecCCCc---eEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCC
Confidence            688888876543   88899999999999999999999999999887654321001223567899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        78 ~~~~Gd~V~~~   88 (341)
T cd05281          78 RVKVGDYVSAE   88 (341)
T ss_pred             CCCCCCEEEEC
Confidence            99999999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.62  E-value=7.6e-15  Score=100.04  Aligned_cols=77  Identities=14%  Similarity=0.047  Sum_probs=64.1

Q ss_pred             cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376           20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD   96 (100)
Q Consensus        20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   96 (100)
                      +.+++++.+.|.+.++||+||+.++++|+.|+....+.........+|.++|+|++|+|+++|+++++|++||+|++
T Consensus        27 ~~l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~  103 (364)
T PLN02702         27 NTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKHLVVGDRVAL  103 (364)
T ss_pred             CceEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEE
Confidence            44888888888899999999999999999999988763211112235778999999999999999999999999986

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.62  E-value=7.6e-15  Score=98.29  Aligned_cols=85  Identities=21%  Similarity=0.346  Sum_probs=71.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++...+ . +.+++++.+.|.+.++||+|++.++++|+.|+....+..    ...+|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~----~~~~~~~~g~e~~G~v~~vG~~v~   74 (325)
T cd08264           1 MKALVFEKSG-I-ENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK----VKPMPHIPGAEFAGVVEEVGDHVK   74 (325)
T ss_pred             CeeEEeccCC-C-CceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCCC----CCCCCeecccceeEEEEEECCCCC
Confidence            6888887665 4 668888888888999999999999999999998876421    123467899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|++.
T Consensus        75 ~~~~Gd~V~~~   85 (325)
T cd08264          75 GVKKGDRVVVY   85 (325)
T ss_pred             CCCCCCEEEEC
Confidence            99999999864

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.62  E-value=6.2e-15  Score=98.92  Aligned_cols=87  Identities=24%  Similarity=0.310  Sum_probs=73.9

Q ss_pred             eeeEEEcccCCCCc---ceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            7 MHAVQYNSYGGGAA---DLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         7 ~ka~~~~~~~~~~~---~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      ||++++++.+.+ +   .+.+++.+.|.+.+++++|++.++++|+.|+....+.++   ....|.++|+|++|+|+++|+
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~~G~   76 (336)
T cd08252           1 MKAIGFTQPLPI-TDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAP---VPGQPKILGWDASGVVEAVGS   76 (336)
T ss_pred             CceEEecCCCCC-CcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCC---CCCCCcccccceEEEEEEcCC
Confidence            688999987765 4   477778888888999999999999999999988776543   234567899999999999999


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      +++.|++||+|++.
T Consensus        77 ~v~~~~~Gd~V~~~   90 (336)
T cd08252          77 EVTLFKVGDEVYYA   90 (336)
T ss_pred             CCCCCCCCCEEEEc
Confidence            99999999999875

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.62  E-value=7.9e-15  Score=98.35  Aligned_cols=87  Identities=30%  Similarity=0.408  Sum_probs=73.3

Q ss_pred             eeeEEEcccCCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ||++++.+.+.+ .+.+++++.+.|.+.++||+||+.++++|+.|+....|.++   ...+|.++|+|++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~---~~~~~~~~g~e~~G~V~~vG~~v   77 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLP---PPKLPLIPGHEIVGRVEAVGPGV   77 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCC---CCCCCccccccccEEEEEECCCC
Confidence            688888776632 13588888888888999999999999999999998887653   23457899999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      .+|++||+|++
T Consensus        78 ~~~~~Gd~V~~   88 (329)
T cd08298          78 TRFSVGDRVGV   88 (329)
T ss_pred             CCCcCCCEEEE
Confidence            99999999976

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.62  E-value=9.2e-15  Score=97.25  Aligned_cols=87  Identities=25%  Similarity=0.372  Sum_probs=74.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++.+++.. +.+++++.+.|.+.+++++|++.++++|+.|+....+...   ....+.++|+|++|+|+.+|+++.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~~G~~~~   76 (325)
T cd08271           1 MKAWVLPKPGAA-LQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPP---AWSYPHVPGVDGAGVVVAVGAKVT   76 (325)
T ss_pred             CeeEEEccCCCc-ceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC---CCCCCcccccceEEEEEEeCCCCC
Confidence            789999887642 4699999999999999999999999999999988776543   122367899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      .|++||+|+++
T Consensus        77 ~~~~Gd~V~~~   87 (325)
T cd08271          77 GWKVGDRVAYH   87 (325)
T ss_pred             cCCCCCEEEec
Confidence            99999999986

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.61  E-value=6.7e-15  Score=99.22  Aligned_cols=83  Identities=17%  Similarity=0.232  Sum_probs=71.5

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCC-CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPS-KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ||++++...    ..+++++.+.|.|. ++||+|++.++++|+.|+....|.+.    ...|.++|+|++|+|+++|+++
T Consensus         1 ~~a~~~~~~----~~~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~----~~~~~~~g~e~~G~V~~vG~~v   72 (344)
T cd08284           1 MKAVVFKGP----GDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP----STPGFVLGHEFVGEVVEVGPEV   72 (344)
T ss_pred             CeeEEEecC----CCceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC----CCCCcccccceEEEEEeeCCCc
Confidence            688888753    34889999999985 99999999999999999988877653    2346789999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||+|+++
T Consensus        73 ~~~~~Gd~V~~~   84 (344)
T cd08284          73 RTLKVGDRVVSP   84 (344)
T ss_pred             cccCCCCEEEEc
Confidence            999999999875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.60  E-value=1.3e-14  Score=95.70  Aligned_cols=91  Identities=34%  Similarity=0.580  Sum_probs=74.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++++...+.. +.+.+++.+.|.+.+++|+|++.++++|+.|+....+..........|..+|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~   79 (309)
T cd05289           1 MKAVRIHEYGGP-EVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT   79 (309)
T ss_pred             CceEEEcccCCc-cceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence            688888877664 5577777777888999999999999999999998877542111234578899999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      +|++||+|+++.
T Consensus        80 ~~~~G~~V~~~~   91 (309)
T cd05289          80 GFKVGDEVFGMT   91 (309)
T ss_pred             CCCCCCEEEEcc
Confidence            999999999864

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.60  E-value=8.1e-15  Score=98.13  Aligned_cols=83  Identities=18%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             ceeeEEEcc-c-CCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            6 LMHAVQYNS-Y-GGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         6 ~~ka~~~~~-~-~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      .||+|++.+ + +++ .+.+++++.+.|.|++|||+||++++++||.|+....   .   ..+.|.++|+|++|+|++  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~---~---~~~~p~v~G~e~~G~V~~--   73 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSK---R---LNEGDTMIGTQVAKVIES--   73 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccc---c---CCCCCcEecceEEEEEec--
Confidence            489999988 3 443 3779999999999999999999999999998764211   1   124578999999999985  


Q ss_pred             CCCCccCCCCEEEee
Q 040376           83 ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~   97 (100)
                       .+++|++||||++.
T Consensus        74 -~~~~~~~Gd~V~~~   87 (329)
T cd08294          74 -KNSKFPVGTIVVAS   87 (329)
T ss_pred             -CCCCCCCCCEEEee
Confidence             45689999999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.60  E-value=8.8e-15  Score=100.64  Aligned_cols=95  Identities=20%  Similarity=0.162  Sum_probs=74.0

Q ss_pred             ccceeeEEEc--ccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCC------CCCC-CCccccccc
Q 040376            4 KPLMHAVQYN--SYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF------LPRK-FPCIPGILV   74 (100)
Q Consensus         4 ~~~~ka~~~~--~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~------~~~~-~p~~~G~e~   74 (100)
                      +.+|||+++.  +++.+.+.+++++.+.|.++++||+|++.++++|+.|+....+.....      .+.. .+.++|||+
T Consensus        10 ~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e~   89 (393)
T cd08246          10 PEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSDA   89 (393)
T ss_pred             chhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccce
Confidence            5679999875  344442358889999999999999999999999999998876641100      0011 225889999


Q ss_pred             eEEEEeecCCCCccCCCCEEEeec
Q 040376           75 LPLIFCELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        75 ~G~V~~vG~~v~~~~~Gd~V~~~~   98 (100)
                      +|+|+++|++++.|++||+|+++.
T Consensus        90 ~G~V~~vG~~v~~~~~Gd~V~~~~  113 (393)
T cd08246          90 SGIVWAVGEGVKNWKVGDEVVVHC  113 (393)
T ss_pred             EEEEEEeCCCCCcCCCCCEEEEec
Confidence            999999999999999999998763

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.60  E-value=1.3e-14  Score=97.02  Aligned_cols=86  Identities=15%  Similarity=0.203  Sum_probs=70.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+.+++ +.+.+++.+.|.+.++||+||+.++++|+.|.....+...  ....+|.++|+|++|+|++.|  +.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~~~g~e~~G~V~~~~--~~   75 (326)
T cd08289           1 FQALVVEKDEDD-VSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGK--IVKRYPFIPGIDLAGTVVESN--DP   75 (326)
T ss_pred             CeeEEEeccCCc-ceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCcc--ccCCCCcCcccceeEEEEEcC--CC
Confidence            789999988765 6788999999999999999999999999999876543211  122457889999999999954  57


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||+|+++
T Consensus        76 ~~~~Gd~V~~~   86 (326)
T cd08289          76 RFKPGDEVIVT   86 (326)
T ss_pred             CCCCCCEEEEc
Confidence            89999999875

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.59  E-value=1.1e-14  Score=98.33  Aligned_cols=88  Identities=16%  Similarity=0.105  Sum_probs=66.5

Q ss_pred             ceeeEEEcccCCCCcceEEeeccC----CCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccc--eEEEE
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPV----PTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILV--LPLIF   79 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~----p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~--~G~V~   79 (100)
                      .+|++....+.  .++|++++.+.    |+|++|||||||+|++|||.|++...|.+..  ....|.++|+++  .|++.
T Consensus         7 ~~~~~~~~~~~--~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~--~~~~p~~~g~~~~g~~~~~   82 (338)
T cd08295           7 ILKAYVTGFPK--ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS--LYLPPFKPGEVITGYGVAK   82 (338)
T ss_pred             EEecCCCCCCC--ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc--ccCCCcCCCCeEeccEEEE
Confidence            35666633322  37899998877    7899999999999999999999988875321  134567888754  45555


Q ss_pred             eecCCCCccCCCCEEEee
Q 040376           80 CELESFNNFCPSRTYFDV   97 (100)
Q Consensus        80 ~vG~~v~~~~~Gd~V~~~   97 (100)
                      .+|++++.|++||+|+++
T Consensus        83 ~v~~~v~~~~vGd~V~~~  100 (338)
T cd08295          83 VVDSGNPDFKVGDLVWGF  100 (338)
T ss_pred             EEecCCCCCCCCCEEEec
Confidence            678888899999999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.58  E-value=2.1e-14  Score=96.37  Aligned_cols=82  Identities=26%  Similarity=0.359  Sum_probs=71.5

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      |++++.+.++.   +++++.+.|.+.+++++|++.++++|+.|+....+.+.   ...+|.++|+|++|+|+++|+++++
T Consensus         1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~---~~~~p~~~g~e~~G~v~~~g~~~~~   74 (330)
T cd08245           1 KAAVVHAAGGP---LEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWG---GSKYPLVPGHEIVGEVVEVGAGVEG   74 (330)
T ss_pred             CeEEEecCCCC---ceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCC---CCCCCcccCccceEEEEEECCCCcc
Confidence            57888876544   89999999999999999999999999999999887653   2345788999999999999999999


Q ss_pred             cCCCCEEE
Q 040376           88 FCPSRTYF   95 (100)
Q Consensus        88 ~~~Gd~V~   95 (100)
                      |++||+|+
T Consensus        75 ~~~Gd~V~   82 (330)
T cd08245          75 RKVGDRVG   82 (330)
T ss_pred             cccCCEEE
Confidence            99999997

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.58  E-value=1.8e-14  Score=96.31  Aligned_cols=77  Identities=25%  Similarity=0.376  Sum_probs=66.8

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+.    ..+++++.+.|.+.++||+||+.++++|+.|+....|.++      .|.++|+|++|+|+++|++  
T Consensus         1 ~~a~~~~~~----~~~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~------~~~~~G~e~~G~Vv~~G~~--   68 (319)
T cd08242           1 MKALVLDGG----LDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP------FPGVPGHEFVGIVEEGPEA--   68 (319)
T ss_pred             CeeEEEeCC----CcEEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC------CCCccCceEEEEEEEeCCC--
Confidence            689998763    3489999999999999999999999999999998877542      4678999999999999987  


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                       +++||+|..
T Consensus        69 -~~~G~~V~~   77 (319)
T cd08242          69 -ELVGKRVVG   77 (319)
T ss_pred             -CCCCCeEEE
Confidence             679999963

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.58  E-value=2.5e-14  Score=94.94  Aligned_cols=88  Identities=28%  Similarity=0.454  Sum_probs=74.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++.+.+.+.+ +.+.+.+.+.|.+.+++++|++.++++|+.|+....+.+..  ...++.++|+|++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~~~   77 (328)
T cd08268           1 MRAVRFHQFGGP-EVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIE--PPPLPARLGYEAAGVVEAVGAGVT   77 (328)
T ss_pred             CeEEEEeccCCc-ceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCC--CCCCCCCCCcceEEEEEeeCCCCC
Confidence            688888876654 66888888888889999999999999999999887765432  234467899999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||+|+++
T Consensus        78 ~~~~Gd~V~~~   88 (328)
T cd08268          78 GFAVGDRVSVI   88 (328)
T ss_pred             cCCCCCEEEec
Confidence            99999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.57  E-value=2.1e-14  Score=97.01  Aligned_cols=75  Identities=23%  Similarity=0.135  Sum_probs=63.0

Q ss_pred             eEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376           22 LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD   96 (100)
Q Consensus        22 ~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   96 (100)
                      +++++.+.|.|.++|++|++.++++|+.|+.++.+.........+|.++|+|++|+|+++|+++++|++||+|++
T Consensus        11 ~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   85 (340)
T TIGR00692        11 AELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVSV   85 (340)
T ss_pred             cEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEEE
Confidence            888999999999999999999999999999886553110012245678999999999999999999999999987

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.57  E-value=4.4e-14  Score=93.79  Aligned_cols=86  Identities=27%  Similarity=0.386  Sum_probs=71.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++.+.+.+.. +.+.+.+.+.|.+.++|++||+.++++|+.|+....+...   ....|.++|+|++|+|+++|.  .
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~--~   74 (320)
T cd08243           1 MKAIVIEQPGGP-EVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSP---SVKFPRVLGIEAVGEVEEAPG--G   74 (320)
T ss_pred             CeEEEEcCCCCc-cceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC---CCCCCccccceeEEEEEEecC--C
Confidence            688888876654 5678888888788999999999999999999998877543   234568899999999999995  5


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      .|++||+|+++.
T Consensus        75 ~~~~Gd~V~~~~   86 (320)
T cd08243          75 TFTPGQRVATAM   86 (320)
T ss_pred             CCCCCCEEEEec
Confidence            799999998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.56  E-value=4e-14  Score=95.93  Aligned_cols=89  Identities=19%  Similarity=0.236  Sum_probs=69.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCC-CCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPT-PSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~-~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|++++.+.+++ ..++..+.+.|. +.+++|+|++.++++|+.|+....+....  ....|.++|+|++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~V~~vG~~v   77 (352)
T cd08247           1 YKALTFKNNTSP-LTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFH--FKVKEKGLGRDYSGVIVKVGSNV   77 (352)
T ss_pred             CceEEEecCCCc-ceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccc--cccCCCccCceeEEEEEEeCccc
Confidence            378888888776 445555555554 48999999999999999999877543211  11236789999999999999999


Q ss_pred             C-ccCCCCEEEeec
Q 040376           86 N-NFCPSRTYFDVY   98 (100)
Q Consensus        86 ~-~~~~Gd~V~~~~   98 (100)
                      + .|++||+|++++
T Consensus        78 ~~~~~~Gd~V~~~~   91 (352)
T cd08247          78 ASEWKVGDEVCGIY   91 (352)
T ss_pred             ccCCCCCCEEEEee
Confidence            8 899999998864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.55  E-value=9.1e-14  Score=94.62  Aligned_cols=89  Identities=15%  Similarity=0.051  Sum_probs=67.3

Q ss_pred             ceeeEEEccc--CCC-CcceEEeec---cCCC-CCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccc--cceE
Q 040376            6 LMHAVQYNSY--GGG-AADLKHVEL---PVPT-PSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGI--LVLP   76 (100)
Q Consensus         6 ~~ka~~~~~~--~~~-~~~~~~~~~---~~p~-~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~--e~~G   76 (100)
                      ++|++.+.+.  +.+ .++|++++.   +.|. +++||||||+.++++||.|+....+...   ....|.++|+  |++|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~---~~~~p~~~G~~~~~~G   84 (348)
T PLN03154          8 ENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD---SYLPPFVPGQRIEGFG   84 (348)
T ss_pred             cceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC---CCCCCcCCCCeeEeeE
Confidence            4678887443  222 367888874   5553 4799999999999999999875443221   1235788997  8899


Q ss_pred             EEEeecCCCCccCCCCEEEee
Q 040376           77 LIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        77 ~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      +|.++|+++++|++||+|+++
T Consensus        85 ~v~~vg~~v~~~~~Gd~V~~~  105 (348)
T PLN03154         85 VSKVVDSDDPNFKPGDLISGI  105 (348)
T ss_pred             EEEEEecCCCCCCCCCEEEec
Confidence            999999999999999999864

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.55  E-value=5.5e-14  Score=94.67  Aligned_cols=76  Identities=20%  Similarity=0.272  Sum_probs=64.1

Q ss_pred             cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHh-CCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376           20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK-GQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD   96 (100)
Q Consensus        20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~-g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   96 (100)
                      +.+.+++.+.|.+.++||+||+.++++|+.|+.... +.+.. ....+|.++|+|++|+|+++|+++++|++||+|++
T Consensus         7 ~~~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~-~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~   83 (339)
T cd08232           7 GDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGT-VRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAV   83 (339)
T ss_pred             CceEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCc-ccccCCeecCccceEEEEeeCCCCCcCCCCCEEEE
Confidence            568999999999999999999999999999988763 32211 12245678999999999999999999999999986

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.54  E-value=1.4e-13  Score=91.29  Aligned_cols=89  Identities=26%  Similarity=0.371  Sum_probs=73.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||++.+...+.+ ..+.+.+.+.+.+.+++++|++.++++|+.|+....+.+..  +..+|.++|+|++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~vg~~~~   77 (325)
T TIGR02824         1 MKAIEITEPGGP-EVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPP--PPGASDILGLEVAGEVVAVGEGVS   77 (325)
T ss_pred             CceEEEccCCCc-ccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCCCCccceeEEEEEEeCCCCC
Confidence            678888766655 66777777777788999999999999999999887765532  234578899999999999999999


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      +|++||+|+++.
T Consensus        78 ~~~~Gd~V~~~~   89 (325)
T TIGR02824        78 RWKVGDRVCALV   89 (325)
T ss_pred             CCCCCCEEEEcc
Confidence            999999999864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.54  E-value=9.1e-14  Score=92.69  Aligned_cols=84  Identities=21%  Similarity=0.369  Sum_probs=69.6

Q ss_pred             cccCCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCC
Q 040376           13 NSYGGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPS   91 (100)
Q Consensus        13 ~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   91 (100)
                      ++++.+ ++.+++++.+.|.+.+++|+|++.++++|+.|+....+.+..  ...+|.++|+|++|+|+++|++++.|++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~G   81 (323)
T cd05282           4 TQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGS--RPPLPAVPGNEGVGVVVEVGSGVSGLLVG   81 (323)
T ss_pred             CcCCCCccceEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCC--CCCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence            444544 136888888888899999999999999999999988776532  23467899999999999999999999999


Q ss_pred             CEEEeec
Q 040376           92 RTYFDVY   98 (100)
Q Consensus        92 d~V~~~~   98 (100)
                      |+|+++.
T Consensus        82 d~V~~~~   88 (323)
T cd05282          82 QRVLPLG   88 (323)
T ss_pred             CEEEEeC
Confidence            9999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.53  E-value=7.5e-14  Score=93.77  Aligned_cols=69  Identities=14%  Similarity=0.130  Sum_probs=57.2

Q ss_pred             cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376           20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      +.+++.+.+.|.|++|||+|||+++++||.++.   |.+.   ....|.++|.|++|+|+++|   +.|++||||+++
T Consensus        17 ~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~---~~~~~~i~G~~~~g~v~~~~---~~~~~GdrV~~~   85 (325)
T TIGR02825        17 SDFELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKR---LKEGDTMMGQQVARVVESKN---VALPKGTIVLAS   85 (325)
T ss_pred             CceEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCc---CCCCCcEecceEEEEEEeCC---CCCCCCCEEEEe
Confidence            789999999999999999999999999996543   4332   12346799999999999976   469999999875

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.53  E-value=1.1e-13  Score=93.60  Aligned_cols=77  Identities=19%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376           20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD   96 (100)
Q Consensus        20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   96 (100)
                      +.+++++.+.|.+.++||+|++.++++|+.|+....+.........+|.++|+|++|+|+++|+++++|++||+|++
T Consensus         8 ~~~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   84 (343)
T cd05285           8 GDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVGDRVAI   84 (343)
T ss_pred             CceeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCCCEEEE
Confidence            44888999999999999999999999999999876432111112235678999999999999999999999999985

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.53  E-value=2.4e-13  Score=90.88  Aligned_cols=88  Identities=26%  Similarity=0.352  Sum_probs=72.0

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      |++.+...+.. ..+.+.+.+.|.+.+++++|++.++++|+.|+....+.+..  ....|.++|+|++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~~~   77 (337)
T cd08275           1 RAVVLTGFGGL-DKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDS--APKPPFVPGFECAGTVEAVGEGVKD   77 (337)
T ss_pred             CeEEEcCCCCc-cceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCCCCCcceeEEEEEEECCCCcC
Confidence            45666655554 56888888878889999999999999999999988775431  2245678999999999999999999


Q ss_pred             cCCCCEEEeec
Q 040376           88 FCPSRTYFDVY   98 (100)
Q Consensus        88 ~~~Gd~V~~~~   98 (100)
                      |++||+|+++.
T Consensus        78 ~~~G~~V~~~~   88 (337)
T cd08275          78 FKVGDRVMGLT   88 (337)
T ss_pred             CCCCCEEEEec
Confidence            99999999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.52  E-value=2e-13  Score=93.83  Aligned_cols=75  Identities=19%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             eEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCC-C---CCCCCCCccccccceEEEEeecCCCCccCCCCEEEe
Q 040376           22 LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLR-P---FLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFD   96 (100)
Q Consensus        22 ~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~-~---~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   96 (100)
                      +++++.+.|.+.+++++|++.++++|+.|+....+... .   .....+|.++|+|++|+|+++|++++.|++||+|++
T Consensus        39 ~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~  117 (384)
T cd08265          39 LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTA  117 (384)
T ss_pred             EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEE
Confidence            88999999999999999999999999999988764210 0   011346789999999999999999999999999985

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.50  E-value=3.9e-13  Score=88.75  Aligned_cols=85  Identities=22%  Similarity=0.285  Sum_probs=70.7

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      ||+.....+.+ ..+.+.+.+.+.+.+++++|++.++++|+.|+....+.+.    ..+|.++|+|++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~----~~~~~~~g~e~~G~v~~~g~~~~~   75 (320)
T cd05286           1 KAVRIHKTGGP-EVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYP----LPLPFVLGVEGAGVVEAVGPGVTG   75 (320)
T ss_pred             CeEEEecCCCc-cceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCC----CCCCccCCcceeEEEEEECCCCCC
Confidence            46666655554 5677877777778899999999999999999998877643    245678999999999999999999


Q ss_pred             cCCCCEEEee
Q 040376           88 FCPSRTYFDV   97 (100)
Q Consensus        88 ~~~Gd~V~~~   97 (100)
                      |++||+|+++
T Consensus        76 ~~~G~~V~~~   85 (320)
T cd05286          76 FKVGDRVAYA   85 (320)
T ss_pred             CCCCCEEEEe
Confidence            9999999886

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.49  E-value=3.7e-13  Score=90.13  Aligned_cols=89  Identities=13%  Similarity=0.028  Sum_probs=67.7

Q ss_pred             eeeEEEcccCC---CCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            7 MHAVQYNSYGG---GAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         7 ~ka~~~~~~~~---~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      .|+|.++..+.   +++.+.+++.+.|.+.+++|+||+.++++|+.|+....+......+...+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            47788776541   237899999999999999999999999999987765544321111223356889999999999996


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      +  .|++||+|+++
T Consensus        82 ~--~~~~Gd~V~~~   93 (329)
T cd05288          82 P--DFKVGDLVSGF   93 (329)
T ss_pred             C--CCCCCCEEecc
Confidence            4  79999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.49  E-value=2.9e-13  Score=89.91  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=65.1

Q ss_pred             cceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHH-hCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376           20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQ-KGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        20 ~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~-~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      +.+++.+.+.|.+.++||+|++.++++|+.|+... .+.... .....|.++|+|++|+|+++|++++.|++||+|+++
T Consensus         5 ~~~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~-~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   82 (312)
T cd08269           5 GRFEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWF-VYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGL   82 (312)
T ss_pred             CeeEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCc-ccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEe
Confidence            56889999999999999999999999999999887 554321 012246789999999999999999999999999976

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.49  E-value=2.3e-13  Score=90.31  Aligned_cols=86  Identities=36%  Similarity=0.646  Sum_probs=68.5

Q ss_pred             EcccCCCCcce--EEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccC
Q 040376           12 YNSYGGGAADL--KHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFC   89 (100)
Q Consensus        12 ~~~~~~~~~~~--~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   89 (100)
                      ++..+++ +++  ++.+.+.|.+.++||+|++.++++|+.|+....|.+........+..+|+|++|+|+++|+++.+|+
T Consensus         3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~   81 (319)
T cd08267           3 YTRYGSP-EVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFK   81 (319)
T ss_pred             eCCCCCh-hhhhhccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCC
Confidence            3445554 444  7778888889999999999999999999998877543111223467899999999999999999999


Q ss_pred             CCCEEEeec
Q 040376           90 PSRTYFDVY   98 (100)
Q Consensus        90 ~Gd~V~~~~   98 (100)
                      +||+|++..
T Consensus        82 ~Gd~V~~~~   90 (319)
T cd08267          82 VGDEVFGRL   90 (319)
T ss_pred             CCCEEEEec
Confidence            999998764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.48  E-value=8.3e-13  Score=87.39  Aligned_cols=88  Identities=27%  Similarity=0.397  Sum_probs=71.4

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCC-CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPS-KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~-~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      |+++++...+.+ ..+.+.+.+ |.+. +++++|++.++++|+.|+....+.+..  ....|.++|+|++|+|+.+|+++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~~g~e~~G~v~~~g~~~   76 (323)
T cd08241           1 MKAVVCKELGGP-EDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV--KPPLPFVPGSEVAGVVEAVGEGV   76 (323)
T ss_pred             CeEEEEecCCCc-ceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCC--CCCCCCcccceeEEEEEEeCCCC
Confidence            688888766554 667787777 6666 499999999999999999988775431  22346689999999999999999


Q ss_pred             CccCCCCEEEeec
Q 040376           86 NNFCPSRTYFDVY   98 (100)
Q Consensus        86 ~~~~~Gd~V~~~~   98 (100)
                      .+|++||+|+++.
T Consensus        77 ~~~~~G~~V~~~~   89 (323)
T cd08241          77 TGFKVGDRVVALT   89 (323)
T ss_pred             CCCCCCCEEEEec
Confidence            9999999999864

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08251 polyketide_synthase polyketide synthase

Probab=99.34  E-value=8.6e-12  Score=82.09  Aligned_cols=68  Identities=18%  Similarity=0.189  Sum_probs=58.8

Q ss_pred             CCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEeec
Q 040376           29 VPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        29 ~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   98 (100)
                      .|.+.+++++|++.++++|+.|+....+.+..  ...+|.++|+|++|+|+++|+++++|++||+|+++.
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~   69 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT--MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGT   69 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC--CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEec
Confidence            46788999999999999999999998876542  234678999999999999999999999999998764

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.25  E-value=3.6e-11  Score=77.99  Aligned_cols=61  Identities=23%  Similarity=0.232  Sum_probs=52.8

Q ss_pred             cEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEeec
Q 040376           36 EVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        36 ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   98 (100)
                      ||+|++.++++|+.|+....+...  .....|.++|+|++|+|+++|++++.|++||+|++..
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~--~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~   61 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYP--PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLP   61 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCC--cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcC
Confidence            689999999999999999887653  1234578899999999999999999999999999764

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.18  E-value=1.3e-10  Score=75.69  Aligned_cols=59  Identities=17%  Similarity=0.087  Sum_probs=52.1

Q ss_pred             CcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEeec
Q 040376           35 DEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        35 ~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   98 (100)
                      +|++||+.++++|+.|+....+.+.     .+|.++|+|++|+|+++|+++++|++||+|+++.
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~-----~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP-----GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC-----CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe
Confidence            5899999999999999998877542     3467899999999999999999999999999864

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.12  E-value=6.6e-10  Score=74.18  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=60.1

Q ss_pred             eeeEEEcc--cCCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccc----cceEEEE
Q 040376            7 MHAVQYNS--YGGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGI----LVLPLIF   79 (100)
Q Consensus         7 ~ka~~~~~--~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~----e~~G~V~   79 (100)
                      .|.+++..  .+.| .+.|++++.+.|.|+.||||+|+.|.|++|.-+..++...    .+..|..+|-    -.+|+|+
T Consensus         9 ~~~~~la~rP~g~p~~d~F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~----SY~~P~~lG~~~~gg~V~~Vv   84 (340)
T COG2130           9 NRRIVLASRPEGAPVPDDFRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAP----SYAPPVELGEVMVGGTVAKVV   84 (340)
T ss_pred             hheeeeccCCCCCCCCCCceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCc----ccCCCcCCCceeECCeeEEEE
Confidence            35555543  2333 3679999999999999999999999999996544333322    2333444554    4455565


Q ss_pred             eecCCCCccCCCCEEEeec
Q 040376           80 CELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        80 ~vG~~v~~~~~Gd~V~~~~   98 (100)
                      +  ++.++|++||.|.+..
T Consensus        85 ~--S~~~~f~~GD~V~~~~  101 (340)
T COG2130          85 A--SNHPGFQPGDIVVGVS  101 (340)
T ss_pred             e--cCCCCCCCCCEEEecc
Confidence            5  7788999999998763

>smart00829 PKS_ER Enoylreductase

Probab=98.88  E-value=8e-09  Score=67.28  Aligned_cols=54  Identities=15%  Similarity=0.055  Sum_probs=47.4

Q ss_pred             EEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCccCCCCEEEeec
Q 040376           39 LKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        39 v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   98 (100)
                      ||+.++++|+.|++...+.+.      .|.++|+|++|+|+++|++++.|++||+|+++.
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~------~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~   55 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP------GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA   55 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC------CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc
Confidence            789999999999998877542      257899999999999999999999999999863

Enoylreductase in Polyketide synthases.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=98.85  E-value=3.2e-08  Score=67.81  Aligned_cols=91  Identities=31%  Similarity=0.435  Sum_probs=61.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCC-CCCCCccccccceEE---EEeec
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFL-PRKFPCIPGILVLPL---IFCEL   82 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~-~~~~p~~~G~e~~G~---V~~vG   82 (100)
                      ++.+.+....+..+.....+.+.|.|.++++++++.++++||.|+++.+|.+.+.. ...+|.+++.++.|.   +...|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g   84 (347)
T KOG1198|consen    5 IRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVG   84 (347)
T ss_pred             cceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccc
Confidence            44455544433325556678899999999999999999999999999999876421 125675555555555   44445


Q ss_pred             -CCCCccCCCCEEEee
Q 040376           83 -ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 -~~v~~~~~Gd~V~~~   97 (100)
                       ..+..+..||.+...
T Consensus        85 ~~~~~~~~~g~~~~~~  100 (347)
T KOG1198|consen   85 DDVVGGWVHGDAVVAF  100 (347)
T ss_pred             cccccceEeeeEEeec
Confidence             334456677665543

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=98.25  E-value=1.5e-06  Score=57.02  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=32.3

Q ss_pred             CCCCCccccccceEEEEeecCCCCccCCCCEEEee
Q 040376           63 PRKFPCIPGILVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        63 ~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      +.++|.++|+|++|+|+++|+++++|++||+|+++
T Consensus        17 ~~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~   51 (277)
T cd08255          17 KLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF   51 (277)
T ss_pred             cCcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec
Confidence            45688999999999999999999999999999885

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=97.61  E-value=0.0014  Score=44.45  Aligned_cols=90  Identities=12%  Similarity=0.033  Sum_probs=55.5

Q ss_pred             eeeEEEccc--CCC-CcceEEee--ccC-CCCCCCcEEEEEeEeeeChhhHHHHhCCCCC--CCCCCCCccccccceEEE
Q 040376            7 MHAVQYNSY--GGG-AADLKHVE--LPV-PTPSKDEVLLKLEATALNPVDWKIQKGQLRP--FLPRKFPCIPGILVLPLI   78 (100)
Q Consensus         7 ~ka~~~~~~--~~~-~~~~~~~~--~~~-p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~--~~~~~~p~~~G~e~~G~V   78 (100)
                      .+++++..+  +.| .+++.++.  .+. .+++.++|+||..|-+..|.-...+....+.  ..+.....+.-...+|+|
T Consensus         4 nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~kV   83 (343)
T KOG1196|consen    4 NKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAKV   83 (343)
T ss_pred             ccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEEE
Confidence            356666542  222 24455443  333 3468899999999999999876554422111  011122222223789999


Q ss_pred             EeecCCCCccCCCCEEEeec
Q 040376           79 FCELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        79 ~~vG~~v~~~~~Gd~V~~~~   98 (100)
                      ++  +..++|++||.|+++.
T Consensus        84 i~--S~~~~~~~GD~v~g~~  101 (343)
T KOG1196|consen   84 ID--SGHPNYKKGDLVWGIV  101 (343)
T ss_pred             Ee--cCCCCCCcCceEEEec
Confidence            99  5678899999998874

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=94.29  E-value=0.17  Score=40.87  Aligned_cols=69  Identities=20%  Similarity=0.300  Sum_probs=49.5

Q ss_pred             cceEEeeccCC---CCCCCcEEEEEeEeeeChhhHHHHhCCCCC-CCCCC---CCccccccceEEEEeecCCCCccCCCC
Q 040376           20 ADLKHVELPVP---TPSKDEVLLKLEATALNPVDWKIQKGQLRP-FLPRK---FPCIPGILVLPLIFCELESFNNFCPSR   92 (100)
Q Consensus        20 ~~~~~~~~~~p---~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-~~~~~---~p~~~G~e~~G~V~~vG~~v~~~~~Gd   92 (100)
                      ..++|.+.+..   +..++.-+..|.|+.||.+|+++..|..++ ..+-.   -.+.+|.|++|+-          +-|.
T Consensus      1427 sSlrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd----------~~Gr 1496 (2376)
T KOG1202|consen 1427 SSLRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRD----------ASGR 1496 (2376)
T ss_pred             cceeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeecccc----------CCCc
Confidence            45778777654   236677789999999999999999998652 11111   2367899999873          4577


Q ss_pred             EEEeec
Q 040376           93 TYFDVY   98 (100)
Q Consensus        93 ~V~~~~   98 (100)
                      ||+++.
T Consensus      1497 RvM~mv 1502 (2376)
T KOG1202|consen 1497 RVMGMV 1502 (2376)
T ss_pred             EEEEee
Confidence            888764

>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts

Probab=93.77  E-value=0.09  Score=29.63  Aligned_cols=22  Identities=0%  Similarity=-0.290  Sum_probs=18.5

Q ss_pred             ceEEEEeecCCC---------CccCCCCEEE
Q 040376           74 VLPLIFCELESF---------NNFCPSRTYF   95 (100)
Q Consensus        74 ~~G~V~~vG~~v---------~~~~~Gd~V~   95 (100)
                      ..|+|+++|++.         ..+++||+|+
T Consensus        35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl   65 (93)
T cd00320          35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVL   65 (93)
T ss_pred             eEEEEEEECCCeECCCCCCccccccCCCEEE
Confidence            689999999873         3589999996

It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=93.30  E-value=0.13  Score=29.52  Aligned_cols=22  Identities=5%  Similarity=-0.120  Sum_probs=18.1

Q ss_pred             ceEEEEeecCCCC----ccCCCCEEE
Q 040376           74 VLPLIFCELESFN----NFCPSRTYF   95 (100)
Q Consensus        74 ~~G~V~~vG~~v~----~~~~Gd~V~   95 (100)
                      .-|+|+++|++..    .+++||+|+
T Consensus        45 ~~g~VvAVG~G~~~~~~~Vk~GD~Vl   70 (100)
T PTZ00414         45 NEGTVVAVAAATKDWTPTVKVGDTVL   70 (100)
T ss_pred             ceeEEEEECCCCccccceecCCCEEE
Confidence            4699999998743    489999996

>PRK00364 groES co-chaperonin GroES; Reviewed

Probab=92.97  E-value=0.12  Score=29.28  Aligned_cols=23  Identities=0%  Similarity=-0.286  Sum_probs=18.4

Q ss_pred             ceEEEEeecCCCC---------ccCCCCEEEe
Q 040376           74 VLPLIFCELESFN---------NFCPSRTYFD   96 (100)
Q Consensus        74 ~~G~V~~vG~~v~---------~~~~Gd~V~~   96 (100)
                      ..|+|+++|++..         .+++||+|+-
T Consensus        36 ~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf   67 (95)
T PRK00364         36 QEGEVVAVGPGRRLDNGERVPLDVKVGDKVLF   67 (95)
T ss_pred             ceEEEEEECCCeECCCCCEeecccCCCCEEEE
Confidence            5899999998542         4899999963

>PRK14533 groES co-chaperonin GroES; Provisional

Probab=91.18  E-value=0.33  Score=27.31  Aligned_cols=23  Identities=0%  Similarity=-0.208  Sum_probs=18.0

Q ss_pred             ceEEEEeecCCCC----ccCCCCEEEe
Q 040376           74 VLPLIFCELESFN----NFCPSRTYFD   96 (100)
Q Consensus        74 ~~G~V~~vG~~v~----~~~~Gd~V~~   96 (100)
                      ..|+|+++|+...    .+++||+|+-
T Consensus        36 ~~G~VvavG~g~~~~~~~Vk~GD~Vl~   62 (91)
T PRK14533         36 MKAEVVAVGKLDDEEDFDIKVGDKVIF   62 (91)
T ss_pred             ceEEEEEECCCCccccccccCCCEEEE
Confidence            5799999997532    4899999963

>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]

Probab=90.72  E-value=0.32  Score=27.57  Aligned_cols=21  Identities=0%  Similarity=-0.224  Sum_probs=16.2

Q ss_pred             eEEEEeecCCCC---------ccCCCCEEE
Q 040376           75 LPLIFCELESFN---------NFCPSRTYF   95 (100)
Q Consensus        75 ~G~V~~vG~~v~---------~~~~Gd~V~   95 (100)
                      -|+|+++|++-.         .+++||+|+
T Consensus        37 ~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vl   66 (96)
T COG0234          37 EGEVVAVGPGRRDENGELVPLDVKVGDRVL   66 (96)
T ss_pred             ceEEEEEccceecCCCCEeccccccCCEEE
Confidence            599999996321         389999995

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=90.67  E-value=0.34  Score=20.20  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=13.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP   32 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~   32 (100)
                      |||+.+.+.    .++++++++.|.+
T Consensus         1 MkAv~y~G~----~~v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGP----KDVRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEET----TEEEEEEE----S
T ss_pred             CcceEEeCC----CceEEEECCCccc
Confidence            789998874    5588888887753

>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []

Probab=90.47  E-value=0.31  Score=27.39  Aligned_cols=24  Identities=0%  Similarity=-0.281  Sum_probs=16.7

Q ss_pred             cceEEEEeecC--------CC-CccCCCCEEEe
Q 040376           73 LVLPLIFCELE--------SF-NNFCPSRTYFD   96 (100)
Q Consensus        73 e~~G~V~~vG~--------~v-~~~~~Gd~V~~   96 (100)
                      ...|+|+++|+        .+ ..+++||+|+-
T Consensus        34 ~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~   66 (93)
T PF00166_consen   34 PNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLF   66 (93)
T ss_dssp             EEEEEEEEE-SEEETTTSSEEETSS-TTSEEEE
T ss_pred             cceeEEEEcCCccccCCCcEeeeeeeeccEEec
Confidence            36899999998        22 35899999853

These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....

>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]

Probab=82.15  E-value=2.1  Score=24.56  Aligned_cols=25  Identities=8%  Similarity=-0.027  Sum_probs=17.6

Q ss_pred             cccceEEEEeecCCCC---------ccCCCCEEE
Q 040376           71 GILVLPLIFCELESFN---------NFCPSRTYF   95 (100)
Q Consensus        71 G~e~~G~V~~vG~~v~---------~~~~Gd~V~   95 (100)
                      +-...|+|+++|++..         ..++||+|.
T Consensus        41 ~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VL   74 (104)
T KOG1641|consen   41 GKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVL   74 (104)
T ss_pred             cccceEEEEEEcCccccCCCCCcCccccCCCEEE
Confidence            3345688888886532         478999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		7e-05
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		1e-04
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		1e-04
4dvj_A	363	Crystal Structure Of A Putative Zinc-Dependent Alco		6e-04

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 3  GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQL--RP 60
          G+ LM AV+   +GG        ++ VP P   +VL+K+ A  +NPV+  I+ G    +P
Sbjct: 26 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKP 85
Query: 61 FLP 63
           LP
Sbjct: 86 LLP 88

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 17 GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLP 63
          GG   L+  +LPVP P   EV ++L+A ALN +D  ++KG   P LP
Sbjct: 10 GGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLP 56

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 9  AVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG 56
          A+Q++ +G     LK V+ P P   K++ L+K+ A +LNP+D+K + G
Sbjct: 9  AIQFDQFGPPKV-LKLVDTPTPEYRKNQXLIKVHAASLNPIDYKTRNG 55

>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol Dehydrogenase Protein From Rhizobium Etli Cfn 42 Length = 363

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 28/36 (77%)
Query: 20 ADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK 55
          A L  +ELP P P+  ++L++++A ++NPVD+K+++
Sbjct: 38 ASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRR 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	4e-20
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-19
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-16
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	5e-16
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-16
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-15
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	8e-14
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-13
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	2e-12
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	1e-11
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	3e-11
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-10
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-10
3gms_A	340	Putative NADPH:quinone reductase; structural genom	1e-10
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	2e-10
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	3e-10
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	5e-10
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-09
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	2e-09
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	3e-09
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	5e-09
4eye_A	342	Probable oxidoreductase; structural genomics, niai	6e-09
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-08
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-08
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	3e-08
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	3e-08
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	3e-08
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	5e-08
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	9e-08
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	2e-07
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-07
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	4e-05
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-04
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	3e-04
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	4e-04
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	8e-04

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 81.1 bits (201), Expect = 4e-20
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQ--LRPFLPR 64
          M A+Q++ +G     LK V+ P P   K+++L+K+ A +LNP+D+K + G   +   L  
Sbjct: 7  MKAIQFDQFGP-PKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKN 65

Query: 65 KFPCIPG 71
            P   G
Sbjct: 66 NLPSGLG 72

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 79.6 bits (197), Expect = 1e-19
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M   Q  +Y      +    + +P  + D++L++ +A  +NPVDWK  K      +    
Sbjct: 2  MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKAN---PINWSN 58

Query: 67 PCIPG 71
            +PG
Sbjct: 59 GHVPG 63

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 15/79 (18%)

Query: 7  MHAVQYNSYGGGAADLKHVE-LPVPTPSK-DEVLLKLEATALNPVDWKIQKGQLRPFLP- 63
            A   + YG     L+  + + +P     +EV++K+ A ++NP+D  ++ G     L  
Sbjct: 22 SMAWVIDKYGK-NEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNM 80

Query: 64 -----------RKFPCIPG 71
                      +FP   G
Sbjct: 81 KRDPLHVKIKGEEFPLTLG 99

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 70.4 bits (173), Expect = 5e-16
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 7  MHAVQYNSYGG--GAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPR 64
          M AV YN        A L  +ELP P P+  ++L++++A ++NPVD+K+++         
Sbjct: 23 MKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTD- 81

Query: 65 KFPCIPG 71
              + G
Sbjct: 82 --WKVIG 86

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 70.3 bits (173), Expect = 5e-16
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 5  PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPR 64
          P M A       G    L+  +L  P P+  +VL+++EA+  NP+D KI+ G+  P   +
Sbjct: 6  PTMIAAVVEEANG-PFVLR--KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEA-PHAQQ 61

Query: 65 KFPCIPG 71
            P I G
Sbjct: 62 PLPAILG 68

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 7  MHAVQYNSYG--GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPR 64
          + A+ +            K   L +P P   E+L+K+++ ++NPVD K +          
Sbjct: 3  LKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD-----VS 57

Query: 65 KFPCIPG 71
          K P + G
Sbjct: 58 KAPRVLG 64

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 64.1 bits (157), Expect = 8e-14
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M AV   + GG    L+  +LPVP P   EV ++L+A ALN +D  ++KG          
Sbjct: 1  MRAVVMRARGG-PEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKG--VASPKLPL 57

Query: 67 PCIPG 71
          P + G
Sbjct: 58 PHVLG 62

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 1  MAGKPLMH-----AVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK 55
          M  +P +      A+  N +            P P   +D+V +++EA A+NP D  ++ 
Sbjct: 1  MGDQPFIPPPQQTALTVNDHDE---VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRG 57

Query: 56 GQLRPFLPRKFPCIPG 71
              P          G
Sbjct: 58 QFATP------WAFLG 67

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFLPR 64
          + A+ Y  +G  A  ++   L +      +V +K+ A  +NP D  + +G   L P    
Sbjct: 27 VRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLP---- 82

Query: 65 KFPCIPG 71
          + P + G
Sbjct: 83 ELPAVGG 89

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 7  MHAVQYNSYGGGAAD-LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRK 65
          + A   +  GG   D     E+ V +P   +V L+  A  +N +D   + G   P +  +
Sbjct: 2  VMAAVIHKKGG--PDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGE 59

Query: 66 FPCIPG 71
           P + G
Sbjct: 60 PPIVVG 65

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M             DLK  E PVP   + +++++  A +LN  D  + +  +       F
Sbjct: 28 MQEWSTE--TVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGL--DLAF 83

Query: 67 PCIPG 71
          P +P 
Sbjct: 84 PFVPA 88

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 7  MHAVQYNSYGG--GAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFL 62
            AV Y  +G        +  E+     + +EV++K   + +NP D    +G    +P  
Sbjct: 4  AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 63 P-----RKFPCIPG 71
                 +     G
Sbjct: 64 TTGFGTTEPAAPCG 77

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF----- 61
          M AV+    G     L   E+ VP P   +VL+K+EA  +   D  +++G+         
Sbjct: 1  MRAVRLVEIGK---PLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57

Query: 62 LPRKFPCIPG 71
          L  K P   G
Sbjct: 58 LGVKLPVTLG 67

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 54.9 bits (133), Expect = 1e-10
 Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFLPR 64
             +Q++ +G     L+     +     +EV +++    +NP D     G    R     
Sbjct: 5  GKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRI---- 60

Query: 65 KFPCIPG 71
            P IPG
Sbjct: 61 PLPNIPG 67

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQ 57
          M A            +   ++PVP     E L+ + A+++N         +
Sbjct: 43 MFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFE 93

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M AV    +GG    L+     +P P   E+ ++++A  LN +D  +++G +    P K 
Sbjct: 4  MRAVVLAGFGG-LNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDN--PPKT 60

Query: 67 PCIPG 71
          P +PG
Sbjct: 61 PLVPG 65

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 53.4 bits (129), Expect = 5e-10
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 13/76 (17%)

Query: 7  MHAVQYNSYGG-----------GAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK 55
          M A+     G                L+   + VP P   +VL+K+   ++NP D    K
Sbjct: 11 MKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIK 70

Query: 56 GQLRPFLPRKFPCIPG 71
          GQ     PR      G
Sbjct: 71 GQYGQ--PRVKGRPAG 84

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
            A     +      L   ++ +P P  +EVL+++    +   D ++ KG        + 
Sbjct: 4  SKAALLKKFSE---PLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAK-QGFRL 59

Query: 67 PCIPG 71
          P I G
Sbjct: 60 PIILG 64

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 1  MAGKP-LMHAVQYNSYGGGAADLK-HVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQL 58
          MA    LM AV+   +GG    LK   ++ VP P   +VL+K+ A  +NPV+  I+ G  
Sbjct: 23 MATGQKLMRAVRVFEFGG-PEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTY 81

Query: 59 RPFLPRKFPCIPG 71
                  P  PG
Sbjct: 82 SR--KPLLPYTPG 92

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 51.1 bits (123), Expect = 3e-09
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M AV ++  GG   +L   E+  P+P + EVLLK+ A+ALN  D   ++GQ  P  P   
Sbjct: 23 MLAVHFDKPGG-PENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP--PPGA 79

Query: 67 PCIPG 71
            I G
Sbjct: 80 SNILG 84

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 50.7 bits (122), Expect = 5e-09
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
             +  +  GG    +K+ + PVP+ S++E+L+K + T +N ++   +KG      P + 
Sbjct: 9  QKVILIDEIGG-YDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGI----YPCEK 63

Query: 67 PCIPG 71
          P + G
Sbjct: 64 PYVLG 68

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 50.3 bits (121), Expect = 6e-09
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QL 58
            G   M A+Q  S  G    L + ++  P    + V++ ++A  +   D+ + KG  QL
Sbjct: 16 TQGPGSMKAIQAQSLSG-PEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQL 74

Query: 59 RPFLPRKFPCIPG 71
          +   P  F  +PG
Sbjct: 75 KMEPP--F--VPG 83

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 7  MHAVQYNSYGGGAAD-LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRK 65
             ++++ +GG   + L+ VE     P+++E+ ++ +A  +N +D  I+ G L P  P  
Sbjct: 2  ATRIEFHKHGG--PEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSG-LYP--PPS 56

Query: 66 FPCIPG 71
           P   G
Sbjct: 57 LPSGLG 62

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 17/82 (20%)

Query: 7   MHAVQYNSYG--GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP---- 60
             A  +           L+  E+P+P  + DEVL+ + A+++N         +  P    
Sbjct: 33  EDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHF 92

Query: 61  -----------FLPRKFPCIPG 71
                          +   + G
Sbjct: 93  LKQNARQGGWATRHDQPYHVLG 114

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 7  MHAVQYNSYGGGAAD-LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRK 65
             +Q+++ GG   + L++V+     P    V+++ +A  LN +D   + G L P     
Sbjct: 2  AKRIQFSTVGG--PEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSG-LYP--APF 56

Query: 66 FPCIPG 71
           P   G
Sbjct: 57 LPSGLG 62

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG--QLRPFLPR 64
          M A      GG    L+ V+LP P   + EV+L++EA  LN  D  ++ G    R     
Sbjct: 1  MKAWVLKRLGG---PLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRL---- 53

Query: 65 KFPCIPG 71
            P IPG
Sbjct: 54 HPPFIPG 60

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 7  MHAVQYNSYG--GGAADLKHVELPVPTPSKDEVLLKLEATALNPVD 50
            A+Q  S     G  +L    +  P P  DEVL+++EA+ LNP D
Sbjct: 3  HSALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSD 48

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M  V   S+GG    +   + P+P   + EVL++ EA  +N  D   ++G   P  P+  
Sbjct: 29 MRFVDLKSFGG-PDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP--PKDA 85

Query: 67 PCIPG 71
            I G
Sbjct: 86 SPILG 90

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 47.2 bits (113), Expect = 9e-08
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M AVQY   G    +   V++P PTP   E+LLK+ A  L   D  +             
Sbjct: 1  MKAVQYTEIGS---EPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQ-YAYGL 56

Query: 67 PCIPG 71
          P   G
Sbjct: 57 PLTLG 61

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 1  MAGKPLMHAVQYNSYG--GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQL 58
          +  + +M  +           A     + PVP P   ++L++     +N  D     G+ 
Sbjct: 18 LYFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRY 77

Query: 59 RPFLPRKFPCIPG 71
           P    K P   G
Sbjct: 78 DP--SVKPPFDIG 88

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSK-DEVLLKLEATALNPVDWKIQKGQLRPFLPRK 65
          + A + + Y      L+  ++  P      +V++++    +   D  + +G     L  K
Sbjct: 16 LKAARLHEYNK---PLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPK 72

Query: 66 FPCIPG 71
           P   G
Sbjct: 73 LPYTLG 78

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 23/74 (31%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEA---------TALNPVDWKIQKGQ 57
          M A    ++G     L   E+PVP P   +V +K+EA          A    DW      
Sbjct: 3  MKAAVVRAFGA---PLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADG--DWP----- 52

Query: 58 LRPFLPRKFPCIPG 71
              +    P IPG
Sbjct: 53 ----VKPTLPFIPG 62

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 23/74 (31%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEA---------TALNPVDWKIQKGQ 57
          M A     +      LK  E+  PT S  EVL++++A          A    DW      
Sbjct: 1  MKAAVVEQFKE---PLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHG--DWP----- 50

Query: 58 LRPFLPRKFPCIPG 71
              +  K P IPG
Sbjct: 51 ----VKPKLPLIPG 60

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 23/74 (31%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEA---------TALNPVDWKIQKGQ 57
             V +    G    L++ ++PVP P  +E+L+ ++                DW      
Sbjct: 6  QKGVIFYESHG---KLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHG--DWP----- 55

Query: 58 LRPFLPRKFPCIPG 71
              LP K P + G
Sbjct: 56 ----LPVKLPLVGG 65

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 22 LKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPG 71
          L + E  +    +  +L+++ +  +   D  + +G+  P +P   P I G
Sbjct: 30 LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGE-DPRVP--LPIILG 76

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 35.6 bits (83), Expect = 8e-04
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          M+ K  M A+     G      + VE+ VP P   EVL+K+ AT++   D  I +     
Sbjct: 1  MSEK--MVAIMKTKPG---YGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWA 55

Query: 61 FLPRKFPCIPG 71
              K P I G
Sbjct: 56 QSRIKPPQIMG 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.94
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.93
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.92
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.91
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.91
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.91
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.91
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.91
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.91
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.91
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.91
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.91
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.91
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.91
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.91
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.91
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.91
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.91
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.9
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.9
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.9
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.9
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.9
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.9
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.9
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.9
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.89
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.89
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.89
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.89
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.89
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.89
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.89
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.89
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.89
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.89
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.89
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.89
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.89
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.88
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.88
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.88
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.88
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.88
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.88
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.88
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.88
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.87
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.87
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.87
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.87
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.87
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.86
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.86
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.86
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.86
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.86
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.85
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.85
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.85
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.85
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.84
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.83
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.81
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.81
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.76
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.74
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.71
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.7
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.48
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	93.76
1g31_A	111	GP31; chaperone, CO-chaperonin, groes, in VIVO pro	93.65
1pcq_O	97	Groes protein; chaperone; HET: ADP; 2.81A {Escheri	91.0
1we3_O	100	CPN10(groes); chaperonin, chaperone, groel, HSP60,	90.72
1p3h_A	99	10 kDa chaperonin; beta barrel, acidic cluster, fl	90.36

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.94  E-value=5.9e-26  Score=153.14  Aligned_cols=95  Identities=22%  Similarity=0.292  Sum_probs=86.9

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEe
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~   80 (100)
                      |+++.+|||+++.+++++ +.+++++.+.|.|+++||+||+++++||++|++.+.|.++.  ...+|.++|||++|+|++
T Consensus        23 ~~~p~~MkA~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~E~~G~V~~   99 (353)
T 4dup_A           23 MSLPQEMRFVDLKSFGGP-DVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP--PKDASPILGLELSGEIVG   99 (353)
T ss_dssp             CCCCSSEEEEEESSSSSG-GGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCC--CTTSCSSSCCEEEEEEEE
T ss_pred             CCCChheeEEEEccCCCc-cceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCccccccEEEEEE
Confidence            778889999999998887 88999999999999999999999999999999999987652  345789999999999999


Q ss_pred             ecCCCCccCCCCEEEeec
Q 040376           81 ELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        81 vG~~v~~~~~Gd~V~~~~   98 (100)
                      +|+++++|++||||+++.
T Consensus       100 vG~~v~~~~vGdrV~~~~  117 (353)
T 4dup_A          100 VGPGVSGYAVGDKVCGLA  117 (353)
T ss_dssp             ECTTCCSCCTTCEEEEEC
T ss_pred             ECCCCCCCCCCCEEEEec
Confidence            999999999999999864

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.93  E-value=2.8e-25  Score=148.67  Aligned_cols=93  Identities=19%  Similarity=0.215  Sum_probs=83.3

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEe
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~   80 (100)
                      |+++.+|||+++++++.+ +.+++++.+.|+|++|||+||++++|||++|++.+.|.++    ..+|.++|||++|+|++
T Consensus         3 ~~~p~~mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~----~~~P~i~G~e~~G~V~~   77 (334)
T 3qwb_A            3 CTIPEQQKVILIDEIGGY-DVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP----CEKPYVLGREASGTVVA   77 (334)
T ss_dssp             --CCSEEEEEEESSSSSG-GGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC----CCSSEECCSEEEEEEEE
T ss_pred             CCCchheEEEEEecCCCC-ceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC----CCCCCccccceEEEEEE
Confidence            345788999999998886 8899999999999999999999999999999999998764    35789999999999999


Q ss_pred             ecCCCCccCCCCEEEeec
Q 040376           81 ELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        81 vG~~v~~~~~Gd~V~~~~   98 (100)
                      +|+++++|++||||+++.
T Consensus        78 vG~~v~~~~~GdrV~~~~   95 (334)
T 3qwb_A           78 KGKGVTNFEVGDQVAYIS   95 (334)
T ss_dssp             ECTTCCSCCTTCEEEEEC
T ss_pred             ECCCCCCCCCCCEEEEee
Confidence            999999999999998653

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.92  E-value=6e-25  Score=147.91  Aligned_cols=95  Identities=21%  Similarity=0.198  Sum_probs=83.3

Q ss_pred             CCcccceeeEEEc--ccC-CCCcceEEeec---------cCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCc
Q 040376            1 MAGKPLMHAVQYN--SYG-GGAADLKHVEL---------PVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPC   68 (100)
Q Consensus         1 m~~~~~~ka~~~~--~~~-~~~~~~~~~~~---------~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~   68 (100)
                      |+++.+|||++++  +++ .+ +.+++++.         +.|.|+++||+||+++++||++|++.+.|.++.  ...+|.
T Consensus         5 m~~p~~mka~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~p~   81 (349)
T 3pi7_A            5 MTIPSEMKALLLVGDGYTKTP-SGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQ--PRVKGR   81 (349)
T ss_dssp             CCCCSEEEEEEECSCBSCSSC-CCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSS--CBCTTS
T ss_pred             CCCchhheEEEEEccccCCCc-ccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCC--CCCCCC
Confidence            6677889999999  663 34 67888888         999999999999999999999999999987642  346899


Q ss_pred             cccccceEEEEeecCCC-CccCCCCEEEeec
Q 040376           69 IPGILVLPLIFCELESF-NNFCPSRTYFDVY   98 (100)
Q Consensus        69 ~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~   98 (100)
                      ++|||++|+|+++|++| ++|++||||++..
T Consensus        82 v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~  112 (349)
T 3pi7_A           82 PAGFEGVGTIVAGGDEPYAKSLVGKRVAFAT  112 (349)
T ss_dssp             BCCSEEEEEEEEECSSHHHHHHTTCEEEEEC
T ss_pred             CccceEEEEEEEECCCccCCCCCCCEEEEec
Confidence            99999999999999999 9999999999763

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.91  E-value=3.2e-24  Score=144.17  Aligned_cols=91  Identities=21%  Similarity=0.309  Sum_probs=82.5

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +.+|||+++.+++++ +.+++++.+.|.|++|||+|||++++||++|++.+.|.++  ....+|.++|||++|+|+++|+
T Consensus        19 p~~MkA~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~vG~   95 (342)
T 4eye_A           19 PGSMKAIQAQSLSGP-EGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQ--LKMEPPFVPGIETAGVVRSAPE   95 (342)
T ss_dssp             CCEEEEEEECSSSGG-GGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSS--SCCCSSBCCCSEEEEEEEECCT
T ss_pred             CcceEEEEEecCCCC-ceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCC--CCCCCCCccceeEEEEEEEECC
Confidence            567999999998887 8899999999999999999999999999999999998764  2346789999999999999999


Q ss_pred             CCCccCCCCEEEeec
Q 040376           84 SFNNFCPSRTYFDVY   98 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~~   98 (100)
                      +++ |++||||+++.
T Consensus        96 ~v~-~~vGDrV~~~~  109 (342)
T 4eye_A           96 GSG-IKPGDRVMAFN  109 (342)
T ss_dssp             TSS-CCTTCEEEEEC
T ss_pred             CCC-CCCCCEEEEec
Confidence            999 99999998763

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.91  E-value=5.6e-24  Score=143.24  Aligned_cols=90  Identities=22%  Similarity=0.395  Sum_probs=82.4

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++++++++ +.+++++.+.|.|++|||+||+++++||++|++.+.|.++.  ...+|.++|||++|+|+++|+++
T Consensus         3 ~mka~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~e~~G~V~~vG~~v   79 (349)
T 4a27_A            3 EMRAVVLAGFGGL-NKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDN--PPKTPLVPGFECSGIVEALGDSV   79 (349)
T ss_dssp             CEEEEEECSSSSG-GGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCSEEEEEEEEECTTC
T ss_pred             eeEEEEEccCCCc-ceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCC--CCCCCccccceeEEEEEEeCCCC
Confidence            5999999998886 78999999999999999999999999999999999987642  45788999999999999999999


Q ss_pred             CccCCCCEEEeec
Q 040376           86 NNFCPSRTYFDVY   98 (100)
Q Consensus        86 ~~~~~Gd~V~~~~   98 (100)
                      ++|++||||+++.
T Consensus        80 ~~~~~GdrV~~~~   92 (349)
T 4a27_A           80 KGYEIGDRVMAFV   92 (349)
T ss_dssp             CSCCTTCEEEEEC
T ss_pred             CCCCCCCEEEEec
Confidence            9999999999864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.91  E-value=3.4e-24  Score=144.97  Aligned_cols=90  Identities=20%  Similarity=0.269  Sum_probs=81.1

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +.+|||++++++ ++ +.+++++.+.|.|++|||+|||++++||++|++.+.|.++.  ...+|.++|||++|+|+++|+
T Consensus        25 ~~~mkA~~~~~~-~~-~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~v~GhE~~G~V~~vG~  100 (363)
T 3uog_A           25 SKWMQEWSTETV-AP-HDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGL--DLAFPFVPASDMSGVVEAVGK  100 (363)
T ss_dssp             CSEEEEEEBSCT-TT-TCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTC--CCCSSBCCCCEEEEEEEEECT
T ss_pred             chhhEEEEEccC-CC-CCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCCcCcccceEEEEEEECC
Confidence            557999999987 44 67999999999999999999999999999999999987652  456899999999999999999


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      ++++|++||||++.
T Consensus       101 ~v~~~~vGDrV~~~  114 (363)
T 3uog_A          101 SVTRFRPGDRVIST  114 (363)
T ss_dssp             TCCSCCTTCEEEEC
T ss_pred             CCCCCCCCCEEEEe
Confidence            99999999999876

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.91  E-value=5.1e-24  Score=143.22  Aligned_cols=94  Identities=24%  Similarity=0.367  Sum_probs=80.4

Q ss_pred             CCc-ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEE
Q 040376            1 MAG-KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIF   79 (100)
Q Consensus         1 m~~-~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~   79 (100)
                      |++ +.+|||+++.+++++   +++++.+.|.|+++||+||+++++||++|++++.|.... ....+|.++|||++|+|+
T Consensus         1 Ms~~~~~mka~~~~~~~~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~P~v~G~E~~G~V~   76 (343)
T 3gaz_A            1 MSLTTPTMIAAVVEEANGP---FVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPH-AQQPLPAILGMDLAGTVV   76 (343)
T ss_dssp             -----CEEEEEEECSTTCC---EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGG-GCCCSSBCCCCEEEEEEE
T ss_pred             CCCCchhheEEEEecCCCc---eEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCC-CCCCCCcccCcceEEEEE
Confidence            665 568999999988775   999999999999999999999999999999999886431 125678999999999999


Q ss_pred             eecCCCCccCCCCEEEeec
Q 040376           80 CELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        80 ~vG~~v~~~~~Gd~V~~~~   98 (100)
                      ++|+++++|++||||++..
T Consensus        77 ~vG~~v~~~~vGdrV~~~~   95 (343)
T 3gaz_A           77 AVGPEVDSFRVGDAVFGLT   95 (343)
T ss_dssp             EECTTCCSCCTTCEEEEEC
T ss_pred             EECCCCCCCCCCCEEEEEe
Confidence            9999999999999998763

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.91  E-value=4.1e-24  Score=145.17  Aligned_cols=90  Identities=21%  Similarity=0.157  Sum_probs=81.2

Q ss_pred             cccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            3 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         3 ~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      ++.+|||+++++++.+   +++++.+.|.|+++||+|||++++||++|++.+.|.++   ...+|.++|||++|+|+++|
T Consensus         5 ~~~tmkA~v~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG   78 (378)
T 3uko_A            5 QVITCKAAVAYEPNKP---LVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDP---EGLFPCILGHEAAGIVESVG   78 (378)
T ss_dssp             SCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEEC
T ss_pred             cceeeEEEEEecCCCc---cEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCC---CCCCCccCCccceEEEEEeC
Confidence            4568999999988765   89999999999999999999999999999999998754   45689999999999999999


Q ss_pred             CCCCccCCCCEEEeec
Q 040376           83 ESFNNFCPSRTYFDVY   98 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~~   98 (100)
                      +++++|++||||++.+
T Consensus        79 ~~v~~~~vGdrV~~~~   94 (378)
T 3uko_A           79 EGVTEVQAGDHVIPCY   94 (378)
T ss_dssp             TTCCSCCTTCEEEECS
T ss_pred             CCCCcCCCCCEEEEec
Confidence            9999999999998653

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.91  E-value=2.3e-24  Score=144.60  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEe
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~   80 (100)
                      |++  +||++++++++.+.+.+++++.+.|.|++|||+|||++++||++|++.+.|.++.  ...+|.++|||++|+|++
T Consensus         1 M~~--~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~E~~G~V~~   76 (340)
T 3gms_A            1 MSL--HGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH--RIPLPNIPGYEGVGIVEN   76 (340)
T ss_dssp             -CC--EEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTT--TSCSSBCCCSCCEEEEEE
T ss_pred             CCc--ccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCC--CCCCCCcCCcceEEEEEE
Confidence            654  5999999998875356899999999999999999999999999999999987652  357889999999999999


Q ss_pred             ecCCCCccCCCCEEEee
Q 040376           81 ELESFNNFCPSRTYFDV   97 (100)
Q Consensus        81 vG~~v~~~~~Gd~V~~~   97 (100)
                      +|+++++|++||||+++
T Consensus        77 vG~~v~~~~vGdrV~~~   93 (340)
T 3gms_A           77 VGAFVSRELIGKRVLPL   93 (340)
T ss_dssp             ECTTSCGGGTTCEEEEC
T ss_pred             eCCCCCCCCCCCEEEec
Confidence            99999999999999875

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.91  E-value=5.4e-24  Score=143.82  Aligned_cols=89  Identities=12%  Similarity=0.038  Sum_probs=80.0

Q ss_pred             CCcccceeeEEEcccCCCCcceEEee--ccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEE
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVE--LPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLI   78 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~--~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V   78 (100)
                      |+++.+|||+++++++.+   +++++  .+.|+|+++||+||+++++||++|++.+.|.++   ...+|.++|||++|+|
T Consensus         1 M~~p~~mka~~~~~~~~~---l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~v~GhE~~G~V   74 (360)
T 1piw_A            1 MSYPEKFEGIAIQSHEDW---KNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG---NMKMPLVVGHEIVGKV   74 (360)
T ss_dssp             CCTTTCEEEEEECCSSST---TSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTS---CCCSSEECCCCEEEEE
T ss_pred             CCCChheEEEEEecCCCC---eeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCC---CCCCCcccCcCceEEE
Confidence            888889999999987654   77788  899999999999999999999999999988654   2457899999999999


Q ss_pred             EeecCCCC-ccCCCCEEE
Q 040376           79 FCELESFN-NFCPSRTYF   95 (100)
Q Consensus        79 ~~vG~~v~-~~~~Gd~V~   95 (100)
                      +++|++++ +|++||||.
T Consensus        75 ~~vG~~v~~~~~~GdrV~   92 (360)
T 1piw_A           75 VKLGPKSNSGLKVGQRVG   92 (360)
T ss_dssp             EEECTTCCSSCCTTCEEE
T ss_pred             EEeCCCCCCCCCCCCEEE
Confidence            99999999 999999994

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.91  E-value=8.9e-24  Score=141.80  Aligned_cols=85  Identities=14%  Similarity=0.074  Sum_probs=75.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++...+.  ..+++++.+.|+|++|||||||+|+|||++|++++.|.++    .++|.++|||++|+|+++|++|+
T Consensus         1 MKA~v~~~~~~--~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~----~~~p~i~GhE~aG~V~~vG~~V~   74 (348)
T 4eez_A            1 MKAAVVRHNPD--GYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG----NKAGTVLGHEGIGIVKEIGADVS   74 (348)
T ss_dssp             CEEEEECSSCC--SSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC----CCTTCBCCSEEEEEEEEECTTCC
T ss_pred             CeEEEEEcCCC--CcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC----CCCCcccceeEEEEEEEECceee
Confidence            89998865322  4589999999999999999999999999999999998764    46789999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||+..
T Consensus        75 ~~~~GdrV~~~   85 (348)
T 4eez_A           75 SLQVGDRVSVA   85 (348)
T ss_dssp             SCCTTCEEEEE
T ss_pred             ecccCCeEeec
Confidence            99999999764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.91  E-value=6.7e-24  Score=141.63  Aligned_cols=89  Identities=17%  Similarity=0.179  Sum_probs=81.5

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++++++++ +.+++++.+.|.|++|||+||+++++||++|++.+.|.++   ...+|.++|||++|+|+++|+++
T Consensus         1 MMkA~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~e~~G~V~~vG~~v   76 (325)
T 3jyn_A            1 MAKRIQFSTVGGP-EVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYP---APFLPSGLGAEGAGVVEAVGDEV   76 (325)
T ss_dssp             CEEEEEBSSCSSG-GGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CSSSSBCCCCCEEEEEEEECTTC
T ss_pred             CcEEEEEecCCCc-ceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC---CCCCCCCCCceeEEEEEEECCCC
Confidence            3999999999887 8899999999999999999999999999999999998765   24678999999999999999999


Q ss_pred             CccCCCCEEEeec
Q 040376           86 NNFCPSRTYFDVY   98 (100)
Q Consensus        86 ~~~~~Gd~V~~~~   98 (100)
                      ++|++||||++..
T Consensus        77 ~~~~~GdrV~~~~   89 (325)
T 3jyn_A           77 TRFKVGDRVAYGT   89 (325)
T ss_dssp             CSCCTTCEEEESS
T ss_pred             CCCCCCCEEEEec
Confidence            9999999998653

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.91  E-value=9.6e-24  Score=142.40  Aligned_cols=93  Identities=28%  Similarity=0.323  Sum_probs=80.7

Q ss_pred             cccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            3 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         3 ~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      .+.+||++++.+++.+ +.+++++.+.|.|+++||+||+.++|||++|++.+.|.++.  ...+|.++|||++|+|+++|
T Consensus        19 ~~~~Mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~p~v~G~E~~G~V~~vG   95 (354)
T 2j8z_A           19 YFQSMLAVHFDKPGGP-ENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP--PPGASNILGLEASGHVAELG   95 (354)
T ss_dssp             --CEEEEEEESSCSSG-GGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CTTSCSSSCSEEEEEEEEEC
T ss_pred             chhheeEEEEccCCCc-cceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCC--CCCCCcccceeeEEEEEEEC
Confidence            3567999999988876 77999999999999999999999999999999999987642  23578999999999999999


Q ss_pred             CCC-CccCCCCEEEeec
Q 040376           83 ESF-NNFCPSRTYFDVY   98 (100)
Q Consensus        83 ~~v-~~~~~Gd~V~~~~   98 (100)
                      +++ ++|++||||+++.
T Consensus        96 ~~v~~~~~vGdrV~~~~  112 (354)
T 2j8z_A           96 PGCQGHWKIGDTAMALL  112 (354)
T ss_dssp             SCC--CCCTTCEEEEEC
T ss_pred             CCcCCCCCCCCEEEEec
Confidence            999 9999999998763

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.91  E-value=6.1e-24  Score=143.42  Aligned_cols=94  Identities=16%  Similarity=0.211  Sum_probs=81.3

Q ss_pred             CcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEee
Q 040376            2 AGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCE   81 (100)
Q Consensus         2 ~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v   81 (100)
                      +++.+||++++.+++.+.+.+++++.+.|.|+++||+|||+++|||++|++.+.|.++.  ...+|.++|||++|+|+++
T Consensus        22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~P~v~G~E~~G~V~~v   99 (357)
T 1zsy_A           22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGL--LPELPAVGGNEGVAQVVAV   99 (357)
T ss_dssp             CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC--CCCSSEECCSCCEEEEEEE
T ss_pred             hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCC--CCCCCccccceEEEEEEEe
Confidence            35667999999987764234888999999999999999999999999999999987542  2357899999999999999


Q ss_pred             cCCCCccCCCCEEEee
Q 040376           82 LESFNNFCPSRTYFDV   97 (100)
Q Consensus        82 G~~v~~~~~Gd~V~~~   97 (100)
                      |+++++|++||||++.
T Consensus       100 G~~v~~~~vGdrV~~~  115 (357)
T 1zsy_A          100 GSNVTGLKPGDWVIPA  115 (357)
T ss_dssp             CTTCCSCCTTCEEEES
T ss_pred             CCCCCCCCCCCEEEEc
Confidence            9999999999999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.91  E-value=8.1e-24  Score=142.34  Aligned_cols=88  Identities=14%  Similarity=0.083  Sum_probs=79.5

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEe
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~   80 (100)
                      |++  +|||+++.+++.+   +++++.+.|.|+++||+|||++++||++|++.+.|.++   ...+|.++|||++|+|++
T Consensus         1 M~m--~mka~~~~~~~~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~E~~G~V~~   72 (348)
T 3two_A            1 MRV--QSKGFAIFSKDEH---FKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWK---EGIYPMIPGHEIAGIIKE   72 (348)
T ss_dssp             CCE--EEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSS---CCCSSBCCCCCEEEEEEE
T ss_pred             Cce--EEEEEEEccCCCC---CeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCC---CCCCCeecCcceeEEEEE
Confidence            665  5999999887654   89999999999999999999999999999999998765   346799999999999999


Q ss_pred             ecCCCCccCCCCEEEe
Q 040376           81 ELESFNNFCPSRTYFD   96 (100)
Q Consensus        81 vG~~v~~~~~Gd~V~~   96 (100)
                      +|+++++|++||||+.
T Consensus        73 vG~~v~~~~vGdrV~~   88 (348)
T 3two_A           73 VGKGVKKFKIGDVVGV   88 (348)
T ss_dssp             ECTTCCSCCTTCEEEE
T ss_pred             ECCCCCCCCCCCEEEE
Confidence            9999999999999976

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.91  E-value=2.8e-24  Score=143.30  Aligned_cols=92  Identities=26%  Similarity=0.395  Sum_probs=80.9

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCC--CCCCCCCCCCccccccceEEEEeecC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQ--LRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~--~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +|||+++.+++.+ +.+++++.+.|+|++|||+||+++++||++|++.+.|.  +.......+|.++|||++|+|+++|+
T Consensus         6 ~Mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG~   84 (321)
T 3tqh_A            6 EMKAIQFDQFGPP-KVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELGS   84 (321)
T ss_dssp             EEEEEEESSSCSG-GGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEECT
T ss_pred             cceEEEEccCCCc-ceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeCC
Confidence            5999999998887 88999999999999999999999999999999999883  11001346789999999999999999


Q ss_pred             CCCccCCCCEEEeec
Q 040376           84 SFNNFCPSRTYFDVY   98 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~~   98 (100)
                      ++++|++||||++..
T Consensus        85 ~v~~~~~GdrV~~~~   99 (321)
T 3tqh_A           85 DVNNVNIGDKVMGIA   99 (321)
T ss_dssp             TCCSCCTTCEEEEEC
T ss_pred             CCCCCCCCCEEEEcc
Confidence            999999999998764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.91  E-value=8.1e-24  Score=143.36  Aligned_cols=90  Identities=18%  Similarity=0.146  Sum_probs=78.5

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEe
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~   80 (100)
                      |+.+.+||++++++++.+   +++++.+.|+|+++||+|||++++||++|++.+.|.++    ..+|.++|||++|+|++
T Consensus         1 ms~~~~mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~P~v~GhE~~G~V~~   73 (371)
T 1f8f_A            1 MSELKDIIAAVTPCKGAD---FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP----VPLPAVLGHEGSGIIEA   73 (371)
T ss_dssp             ---CEEEEEEEBCSTTCC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCEEEEEEEE
T ss_pred             CCccccceEEEEcCCCCC---eEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC----CCCCcccCcccceEEEE
Confidence            777667999999987654   88899999999999999999999999999999988653    35789999999999999


Q ss_pred             ecCCCCccCCCCEEEee
Q 040376           81 ELESFNNFCPSRTYFDV   97 (100)
Q Consensus        81 vG~~v~~~~~Gd~V~~~   97 (100)
                      +|++|++|++||||++.
T Consensus        74 vG~~v~~~~~GdrV~~~   90 (371)
T 1f8f_A           74 IGPNVTELQVGDHVVLS   90 (371)
T ss_dssp             ECTTCCSCCTTCEEEEC
T ss_pred             eCCCCCCCCCCCEEEec
Confidence            99999999999999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.9e-23  Score=140.47  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=79.6

Q ss_pred             cccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            3 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         3 ~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      ++.+|||+++++++.+   +++++.+.|.|+++||+||+++++||++|++.+.|.++  ....+|.++|||++|+|+++|
T Consensus         2 ~p~~mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~G~E~~G~V~~vG   76 (347)
T 2hcy_A            2 IPETQKGVIFYESHGK---LEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWP--LPVKLPLVGGHEGAGVVVGMG   76 (347)
T ss_dssp             CCSEEEEEEESSTTCC---CEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSS--SCCCSSEECCCEEEEEEEEEC
T ss_pred             CCcccEEEEEeCCCCC---CEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCC--CCCCCCcccCccceEEEEEEC
Confidence            4567999999987654   88999999999999999999999999999999988654  134678999999999999999


Q ss_pred             CCCCccCCCCEEEee
Q 040376           83 ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~   97 (100)
                      +++++|++||||++.
T Consensus        77 ~~v~~~~~GdrV~~~   91 (347)
T 2hcy_A           77 ENVKGWKIGDYAGIK   91 (347)
T ss_dssp             TTCCSCCTTCEEEEC
T ss_pred             CCCCCCcCCCEEEEe
Confidence            999999999999863

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.90  E-value=2.2e-23  Score=139.80  Aligned_cols=85  Identities=22%  Similarity=0.318  Sum_probs=77.8

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++++++.+   +++++.+.|+|+++||+||+++++||++|++.+.|.++.  ...+|.++|||++|+|+++|+++
T Consensus         2 ~MkA~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~v~G~E~~G~V~~vG~~v   76 (340)
T 3s2e_A            2 MMKAAVVRAFGAP---LTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPV--KPTLPFIPGHEGVGYVSAVGSGV   76 (340)
T ss_dssp             EEEEEEBCSTTSC---CEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCSEEEEEEEEECSSC
T ss_pred             ceEEEEEecCCCC---CEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCC--CCCCCcccCCcceEEEEEECCCC
Confidence            5999999988765   899999999999999999999999999999999997652  34689999999999999999999


Q ss_pred             CccCCCCEEE
Q 040376           86 NNFCPSRTYF   95 (100)
Q Consensus        86 ~~~~~Gd~V~   95 (100)
                      ++|++||||.
T Consensus        77 ~~~~vGdrV~   86 (340)
T 3s2e_A           77 SRVKEGDRVG   86 (340)
T ss_dssp             CSCCTTCEEE
T ss_pred             CcCCCCCEEE
Confidence            9999999995

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.90  E-value=2.1e-23  Score=140.73  Aligned_cols=91  Identities=30%  Similarity=0.444  Sum_probs=80.7

Q ss_pred             ccceeeEEEcccCCCCcceEE-eeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            4 KPLMHAVQYNSYGGGAADLKH-VELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~-~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      +.+|||+++.+++.+ +.+++ ++.+.|.|+++||+||+.++|||++|++.+.|.++.  ...+|.++|||++|+|+++|
T Consensus        27 ~~~Mka~~~~~~g~~-~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~P~v~G~E~~G~V~~vG  103 (351)
T 1yb5_A           27 QKLMRAVRVFEFGGP-EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR--KPLLPYTPGSDVAGVIEAVG  103 (351)
T ss_dssp             -CEEEEEEESSCSSG-GGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC--CCCSSBCCCSCEEEEEEEEC
T ss_pred             cceEEEEEEccCCCc-ceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCcCCceeEEEEEEEC
Confidence            457999999988876 78999 799999999999999999999999999999886542  24578999999999999999


Q ss_pred             CCCCccCCCCEEEee
Q 040376           83 ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~   97 (100)
                      +++++|++||||++.
T Consensus       104 ~~v~~~~vGdrV~~~  118 (351)
T 1yb5_A          104 DNASAFKKGDRVFTS  118 (351)
T ss_dssp             TTCTTCCTTCEEEES
T ss_pred             CCCCCCCCCCEEEEe
Confidence            999999999999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.90  E-value=2.5e-23  Score=138.31  Aligned_cols=87  Identities=18%  Similarity=0.230  Sum_probs=78.6

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++++  .+ +.+++++.+.|+|++|||+||+++++||++|++.+.|.++   ...+|.++|||++|+|+++|+++
T Consensus         4 tMka~~~~~--~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~i~G~e~~G~V~~vG~~v   77 (315)
T 3goh_A            4 QHQVWAYQT--KT-HSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPI---NWSNGHVPGVDGAGVIVKVGAKV   77 (315)
T ss_dssp             EEEEEEEET--TT-TEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTT---CCCTTCCCCSEEEEEEEEECTTS
T ss_pred             ceEEEEEeC--CC-CeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCC---cCCCCCEeeeeeEEEEEEeCCCC
Confidence            599999986  33 6799999999999999999999999999999999998764   34788999999999999999999


Q ss_pred             CccCCCCEEEeec
Q 040376           86 NNFCPSRTYFDVY   98 (100)
Q Consensus        86 ~~~~~Gd~V~~~~   98 (100)
                      ++|++||||++..
T Consensus        78 ~~~~vGdrV~~~~   90 (315)
T 3goh_A           78 DSKMLGRRVAYHT   90 (315)
T ss_dssp             CGGGTTCEEEEEC
T ss_pred             CCCCCCCEEEEeC
Confidence            9999999998863

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.90  E-value=3.3e-23  Score=139.96  Aligned_cols=93  Identities=13%  Similarity=-0.048  Sum_probs=77.9

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCC--------CCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccc
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVP--------TPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGI   72 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p--------~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~   72 (100)
                      |+++.+|||+++..+    +.+++++.+.|        .|+++||+||+++++||++|++.+.+.........+|.++||
T Consensus         3 ~~~~~~mka~~~~~~----~~l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~   78 (363)
T 3m6i_A            3 SSASKTNIGVFTNPQ----HDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGH   78 (363)
T ss_dssp             --CCSCCEEEEECTT----CCEEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCC
T ss_pred             CCCcccceeEEEeCC----CcEEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCc
Confidence            345668999998853    55999999999        999999999999999999999988754221123467899999


Q ss_pred             cceEEEEeecCCCCccCCCCEEEee
Q 040376           73 LVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        73 e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      |++|+|+++|+++++|++||||++.
T Consensus        79 E~~G~V~~vG~~v~~~~vGdrV~~~  103 (363)
T 3m6i_A           79 ESAGEVIAVHPSVKSIKVGDRVAIE  103 (363)
T ss_dssp             EEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             ceEEEEEEECCCCCCCCCCCEEEEe
Confidence            9999999999999999999999864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.90  E-value=3.3e-23  Score=140.40  Aligned_cols=89  Identities=24%  Similarity=0.156  Sum_probs=79.0

Q ss_pred             cccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            3 GKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         3 ~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      .+.+|||+++.+++.+   +++++.+.|.|+++||+|||++++||++|++++.|.++   ...+|.++|||++|+|+++|
T Consensus         3 ~p~~mkA~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG   76 (373)
T 2fzw_A            3 EVIKCKAAVAWEAGKP---LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP---EGCFPVILGHLGAGIVESVG   76 (373)
T ss_dssp             CCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCT---TCCSSBCCCCEEEEEEEEEC
T ss_pred             CccceEEEEEecCCCC---cEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCC---CCCCCccccccccEEEEEEC
Confidence            3557999999887654   88899999999999999999999999999999988654   23578999999999999999


Q ss_pred             CCCCccCCCCEEEee
Q 040376           83 ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~   97 (100)
                      ++|++|++||||++.
T Consensus        77 ~~V~~~~vGdrV~~~   91 (373)
T 2fzw_A           77 EGVTKLKAGDTVIPL   91 (373)
T ss_dssp             TTCCSCCTTCEEEEC
T ss_pred             CCCCCCCCCCEEEEC
Confidence            999999999999875

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.90  E-value=4.9e-23  Score=138.31  Aligned_cols=87  Identities=25%  Similarity=0.259  Sum_probs=78.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++.+   +++++.+.|.|++|||+||+++++||++|++.+.|.+.. ....+|.++|||++|+|+++|++++
T Consensus         1 MkA~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~p~i~G~e~~G~V~~vG~~v~   76 (345)
T 3jv7_A            1 MKAVQYTEIGSE---PVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQ-YAYGLPLTLGHEGVGTVAELGEGVT   76 (345)
T ss_dssp             CEEEEECSTTSC---CEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTT-CCSCSSEECCSEEEEEEEEECTTCC
T ss_pred             CeEEEEcCCCCc---eEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCc-cCCCCCcccCcccEEEEEEECCCCC
Confidence            899999998765   899999999999999999999999999999999987542 2356889999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||++.
T Consensus        77 ~~~vGdrV~~~   87 (345)
T 3jv7_A           77 GFGVGDAVAVY   87 (345)
T ss_dssp             SCCTTCEEEEC
T ss_pred             CCCCCCEEEEe
Confidence            99999999874

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.90  E-value=3.7e-23  Score=140.34  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=75.5

Q ss_pred             CCcccceeeEEEcccCCCCcceEEe-eccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEE
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHV-ELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIF   79 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~-~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~   79 (100)
                      |+++.+|||+++.++    ..++++ +.+.|.|+++||+||+++++||++|++++.+.      ..+|.++|||++|+|+
T Consensus         6 m~~p~~mkA~v~~~~----~~l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~------~~~p~v~G~e~~G~V~   75 (371)
T 3gqv_A            6 FIPPPQQTALTVNDH----DEVTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF------ATPWAFLGTDYAGTVV   75 (371)
T ss_dssp             CCCCSCEEEEEECTT----SCEEEEEEECCCCCCTTSEEEEEEEEECCGGGGC-----------CCTTSCCCSEEEEEEE
T ss_pred             CCCchhceeEEEcCC----CceEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC------CCCCccCccccEEEEE
Confidence            777889999999875    348998 99999999999999999999999999887652      2358999999999999


Q ss_pred             eecCCCCccCCCCEEEeec
Q 040376           80 CELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        80 ~vG~~v~~~~~Gd~V~~~~   98 (100)
                      ++|+++++|++||||++.+
T Consensus        76 ~vG~~v~~~~~GdrV~~~~   94 (371)
T 3gqv_A           76 AVGSDVTHIQVGDRVYGAQ   94 (371)
T ss_dssp             EECTTCCSCCTTCEEEEEC
T ss_pred             EeCCCCCCCCCCCEEEEec
Confidence            9999999999999999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.90  E-value=3.6e-23  Score=140.28  Aligned_cols=87  Identities=18%  Similarity=0.150  Sum_probs=77.8

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +.+|||+++.+++++   +++++.+.|.|+++||+||+++++||++|++.+.|.++    ..+|.++|||++|+|+++|+
T Consensus         7 p~~mka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~P~v~GhE~~G~V~~vG~   79 (373)
T 1p0f_A            7 DITCKAAVAWEPHKP---LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP----SKFPVILGHEAVGVVESIGA   79 (373)
T ss_dssp             CEEEEEEEBSSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCCEEEEEEEECT
T ss_pred             cceeEEEEEEcCCCC---eeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC----CCCCcccCcCceEEEEEECC
Confidence            456999999887654   88899999999999999999999999999999988643    35789999999999999999


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      +|++|++||||++.
T Consensus        80 ~v~~~~vGdrV~~~   93 (373)
T 1p0f_A           80 GVTCVKPGDKVIPL   93 (373)
T ss_dssp             TCCSCCTTCEEEEC
T ss_pred             CCCccCCCCEEEEC
Confidence            99999999999875

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.89  E-value=7.3e-23  Score=137.27  Aligned_cols=83  Identities=19%  Similarity=0.179  Sum_probs=74.8

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCC-CCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPT-PSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~-~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      |||++++++|    .++++|.|.|+ +++|||||||+++|||++|++.+.|...    ..+|.++|||++|+|+++|++|
T Consensus         1 MkAvv~~~~g----~l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~----~~~P~i~G~E~~G~V~~vG~~V   72 (346)
T 4a2c_A            1 MKSVVNDTDG----IVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA----HYYPITLGHEFSGYIDAVGSGV   72 (346)
T ss_dssp             CEEEEECSSS----CEEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS----SSSSBCCCCEEEEEEEEECTTC
T ss_pred             CCEEEEecCC----CEEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC----CCCCccccEEEEEEEEEECCCc
Confidence            8999998765    38999999998 5799999999999999999999888653    4678999999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||||++.
T Consensus        73 ~~~~~GdrV~~~   84 (346)
T 4a2c_A           73 DDLHPGDAVACV   84 (346)
T ss_dssp             CSCCTTCEEEEC
T ss_pred             ccccCCCeEEee
Confidence            999999999764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.89  E-value=6.4e-23  Score=136.83  Aligned_cols=85  Identities=18%  Similarity=0.279  Sum_probs=77.0

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++++++.+ +.+++++.+.|.|+++||+||+++++||++|++.+.|.++   ...+|.++|||++|+|+++|+++
T Consensus         1 ~Mka~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG~~v   76 (327)
T 1qor_A            1 MATRIEFHKHGGP-EVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSGV   76 (327)
T ss_dssp             -CEEEEBSSCCSG-GGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEEEEECTTC
T ss_pred             CcEEEEEcCCCCh-hheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCC---CCCCCCCCCceeEEEEEEECCCC
Confidence            3899999988776 7799999999999999999999999999999999988653   23578999999999999999999


Q ss_pred             CccCCCCEE
Q 040376           86 NNFCPSRTY   94 (100)
Q Consensus        86 ~~~~~Gd~V   94 (100)
                      ++|++||||
T Consensus        77 ~~~~~GdrV   85 (327)
T 1qor_A           77 KHIKAGDRV   85 (327)
T ss_dssp             CSCCTTCEE
T ss_pred             CCCCCCCEE
Confidence            999999999

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.89  E-value=5.4e-23  Score=139.23  Aligned_cols=88  Identities=26%  Similarity=0.388  Sum_probs=79.0

Q ss_pred             ceeeEEEccc---CCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            6 LMHAVQYNSY---GGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         6 ~~ka~~~~~~---~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      +|||++++++   +++ +.+++++.+.|.|+++||+||+++++||++|++.+.|.++   ...+|.++|||++|+|+++|
T Consensus        22 ~MkA~~~~~~~~~~~~-~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~p~v~G~E~~G~V~~vG   97 (363)
T 4dvj_A           22 SMKAVGYNKPAPITDD-ASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPP---DGTDWKVIGYDAAGIVSAVG   97 (363)
T ss_dssp             EEEEEEBSSCCCTTST-TSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC-----CCSBCCCCCEEEEEEEEC
T ss_pred             eeEEEEEeccCCCCCC-ceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCC---CCCCCCcccceeEEEEEEeC
Confidence            5999999987   455 7899999999999999999999999999999999998764   34678999999999999999


Q ss_pred             CCCCccCCCCEEEee
Q 040376           83 ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~   97 (100)
                      +++++|++||||++.
T Consensus        98 ~~v~~~~vGdrV~~~  112 (363)
T 4dvj_A           98 PDVTLFRPGDEVFYA  112 (363)
T ss_dssp             TTCCSCCTTCEEEEC
T ss_pred             CCCCCCCCCCEEEEc
Confidence            999999999999864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.89  E-value=6.6e-23  Score=137.14  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=75.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+++.+ +.+++++.+.|.|+++||+||+++++||++|++++.|.+.......+|.++|||++|+|+++|++++
T Consensus         2 Mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (333)
T 1wly_A            2 VMAAVIHKKGGP-DNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVT   80 (333)
T ss_dssp             CEEEEESSCSSG-GGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCC
T ss_pred             cEEEEEcccCCc-ceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCC
Confidence            899999988876 7899999999999999999999999999999999988651000135789999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||+..
T Consensus        81 ~~~~GdrV~~~   91 (333)
T 1wly_A           81 DFTVGERVCTC   91 (333)
T ss_dssp             SCCTTCEEEEC
T ss_pred             CCCCCCEEEEe
Confidence            99999999764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.89  E-value=8.9e-23  Score=137.24  Aligned_cols=86  Identities=21%  Similarity=0.308  Sum_probs=78.4

Q ss_pred             ceeeEEEcccC---CCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            6 LMHAVQYNSYG---GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         6 ~~ka~~~~~~~---~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      +|||++++++|   ++ +.+++++.+.|.|++|||+|||++++||++|++.+.|.     ...+|.++|||++|+|+++|
T Consensus         2 ~MkA~~~~~~G~~~~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~-----~~~~p~i~G~e~~G~V~~vG   75 (346)
T 3fbg_A            2 SLKAIGFEQPFKLSDG-NLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD-----VSKAPRVLGFDAIGVVESVG   75 (346)
T ss_dssp             CEEEEEBSSCCCGGGC-CCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC-----CSSSCBCCCCCEEEEEEEEC
T ss_pred             CcEEEEEEeccccCCC-ceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC-----CCCCCcCcCCccEEEEEEeC
Confidence            48999999987   55 78999999999999999999999999999999988875     23678999999999999999


Q ss_pred             CCCCccCCCCEEEee
Q 040376           83 ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~   97 (100)
                      +++++|++||||++.
T Consensus        76 ~~v~~~~~GdrV~~~   90 (346)
T 3fbg_A           76 NEVTMFNQGDIVYYS   90 (346)
T ss_dssp             TTCCSCCTTCEEEEC
T ss_pred             CCCCcCCCCCEEEEc
Confidence            999999999999875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.89  E-value=1.2e-22  Score=136.39  Aligned_cols=86  Identities=30%  Similarity=0.429  Sum_probs=78.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++.+ +.+++++.+.|.|+++||+|||++++||++|++.+.|.++.  ...+|.++|||++|+|+++|++++
T Consensus         1 Mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~E~~G~V~~vG~~v~   77 (343)
T 2eih_A            1 MRAVVMRARGGP-EVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASP--KLPLPHVLGADGSGVVDAVGPGVE   77 (343)
T ss_dssp             CEEEEECSSSSG-GGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSST--TCCSSEECCSEEEEEEEEECSSCC
T ss_pred             CeEEEEecCCCC-ceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCC--CCCCCcccccceEEEEEEECCCCC
Confidence            799999988776 67999999999999999999999999999999999886541  246789999999999999999999


Q ss_pred             ccCCCCEEE
Q 040376           87 NFCPSRTYF   95 (100)
Q Consensus        87 ~~~~Gd~V~   95 (100)
                      +|++||||+
T Consensus        78 ~~~vGdrV~   86 (343)
T 2eih_A           78 GFAPGDEVV   86 (343)
T ss_dssp             SCCTTCEEE
T ss_pred             CCCCCCEEE
Confidence            999999998

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.89  E-value=4e-23  Score=139.77  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=80.1

Q ss_pred             ccceeeEEEcccCCC-CcceEE-eeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEee
Q 040376            4 KPLMHAVQYNSYGGG-AADLKH-VELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCE   81 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~-~~~~~~-~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v   81 (100)
                      +.+|||+++++++.+ .+.+++ ++.+.|.|+++||+|||++++||++|++.+.|.+..  ...+|.++|||++|+|+++
T Consensus        21 ~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~~P~i~G~E~~G~V~~v   98 (362)
T 2c0c_A           21 QSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP--SVKPPFDIGFEGIGEVVAL   98 (362)
T ss_dssp             CCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCT--TCCSCEECCSEEEEEEEEE
T ss_pred             hhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCC--CCCCCCCCCceeEEEEEEE
Confidence            457999999987642 145888 999999999999999999999999999999886542  3467899999999999999


Q ss_pred             cCCCC-ccCCCCEEEee
Q 040376           82 LESFN-NFCPSRTYFDV   97 (100)
Q Consensus        82 G~~v~-~~~~Gd~V~~~   97 (100)
                      |++++ +|++||||++.
T Consensus        99 G~~V~~~~~vGdrV~~~  115 (362)
T 2c0c_A           99 GLSASARYTVGQAVAYM  115 (362)
T ss_dssp             CTTGGGTCCTTCEEEEE
T ss_pred             CCCccCCCCCCCEEEEc
Confidence            99999 99999999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.89  E-value=8.8e-23  Score=138.47  Aligned_cols=87  Identities=21%  Similarity=0.202  Sum_probs=77.3

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +.+||++++.+++.+   +++++.+.|.|+++||+|||++++||++|++.+.|. +   ...+|.++|||++|+|+++|+
T Consensus         6 p~~mka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~---~~~~P~v~GhE~~G~V~~vG~   78 (376)
T 1e3i_A            6 VIKCKAAIAWKTGSP---LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-K---KALFPVVLGHECAGIVESVGP   78 (376)
T ss_dssp             CEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-S---CCCSSBCCCCEEEEEEEEECT
T ss_pred             ChheeEEEEecCCCC---eEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-C---CCCCCcccCccccEEEEEECC
Confidence            457999999887654   888999999999999999999999999999988875 2   246789999999999999999


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      +|++|++||||++.
T Consensus        79 ~v~~~~vGdrV~~~   92 (376)
T 1e3i_A           79 GVTNFKPGDKVIPF   92 (376)
T ss_dssp             TCCSCCTTCEEEEC
T ss_pred             CCccCCCCCEEEEC
Confidence            99999999999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.89  E-value=2.1e-22  Score=135.98  Aligned_cols=90  Identities=12%  Similarity=0.124  Sum_probs=74.9

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEe
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~   80 (100)
                      |+.+.+|+++...+  .+ +.+++++.+.|.|+++||+|||++++||++|++.+.|.+.   ...+|.++|||++|+|++
T Consensus         4 m~~~m~~~a~~~~~--~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~   77 (357)
T 2cf5_A            4 MEAERKTTGWAARD--PS-GILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLG---MSNYPMVPGHEVVGEVVE   77 (357)
T ss_dssp             --CCCEEEEEEECS--TT-CCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTT---CCCSSBCCCCEEEEEEEE
T ss_pred             ccCcceeEEEEEcc--CC-CCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCC---CCCCCeecCcceeEEEEE
Confidence            44454566666554  33 5699999999999999999999999999999999988654   245789999999999999


Q ss_pred             ecCCCCccCCCCEEEe
Q 040376           81 ELESFNNFCPSRTYFD   96 (100)
Q Consensus        81 vG~~v~~~~~Gd~V~~   96 (100)
                      +|+++++|++||||+.
T Consensus        78 vG~~v~~~~vGdrV~~   93 (357)
T 2cf5_A           78 VGSDVSKFTVGDIVGV   93 (357)
T ss_dssp             ECSSCCSCCTTCEEEE
T ss_pred             ECCCCCCCCCCCEEEE
Confidence            9999999999999974

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.89  E-value=1.2e-22  Score=137.75  Aligned_cols=85  Identities=21%  Similarity=0.402  Sum_probs=77.3

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +.+|||+++++++    .+++++.+.|.|++|||+||+++++||++|++.+.|.+    ...+|.++|||++|+|+++|+
T Consensus        21 p~~mkA~v~~~~~----~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~----~~~~p~v~G~e~~G~V~~vG~   92 (370)
T 4ej6_A           21 QSMMKAVRLESVG----NISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEF----PSTPPVTLGHEFCGIVVEAGS   92 (370)
T ss_dssp             CCEEEEEEEEETT----EEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSS----CCCSSEECCCSEEEEEEEECT
T ss_pred             chheEEEEEecCC----ceEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCC----CCCCCeecCcceEEEEEEECC
Confidence            5679999998753    48999999999999999999999999999999999875    346789999999999999999


Q ss_pred             CCCccCCCCEEEe
Q 040376           84 SFNNFCPSRTYFD   96 (100)
Q Consensus        84 ~v~~~~~Gd~V~~   96 (100)
                      ++++|++||||++
T Consensus        93 ~v~~~~vGdrV~~  105 (370)
T 4ej6_A           93 AVRDIAPGARITG  105 (370)
T ss_dssp             TCCSSCTTCEEEE
T ss_pred             CCCCCCCCCEEEE
Confidence            9999999999986

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.89  E-value=1.8e-22  Score=135.41  Aligned_cols=86  Identities=22%  Similarity=0.212  Sum_probs=76.6

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++.+   +++++.+.|+|+++||+||+++++||++|++.+.|.++  ....+|.++|||++|+|+++|++++
T Consensus         1 Mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~v~GhE~~G~V~~vG~~v~   75 (339)
T 1rjw_A            1 MKAAVVEQFKEP---LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWP--VKPKLPLIPGHEGVGIVEEVGPGVT   75 (339)
T ss_dssp             CEEEEBSSTTSC---CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCSCEEEEEEEECTTCC
T ss_pred             CeEEEEcCCCCC---cEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCC--cCCCCCeeccccceEEEEEECCCCC
Confidence            799999887654   88999999999999999999999999999999988654  1346789999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||+..
T Consensus        76 ~~~vGdrV~~~   86 (339)
T 1rjw_A           76 HLKVGDRVGIP   86 (339)
T ss_dssp             SCCTTCEEEEC
T ss_pred             cCCCCCEEEEe
Confidence            99999999853

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.89  E-value=1.3e-22  Score=137.57  Aligned_cols=87  Identities=20%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +.+|||+++.+++.+   +++++.+.|.|+++||+|||++++||++|++.+.|.++    ..+|.++|||++|+|+++|+
T Consensus         6 ~~~mkA~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~P~v~GhE~~G~V~~vG~   78 (374)
T 2jhf_A            6 VIKCKAAVLWEEKKP---FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV----TPLPVIAGHEAAGIVESIGE   78 (374)
T ss_dssp             CEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC----CCSSBCCCCSEEEEEEEECT
T ss_pred             ceeEEEEEEecCCCc---eEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCC----CCCCcccCcCceEEEEEECC
Confidence            456999999887655   88899999999999999999999999999999988653    23789999999999999999


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      +|++|++||||++.
T Consensus        79 ~v~~~~vGdrV~~~   92 (374)
T 2jhf_A           79 GVTTVRPGDKVIPL   92 (374)
T ss_dssp             TCCSCCTTCEEEEC
T ss_pred             CCCCCCCCCEEEEC
Confidence            99999999999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.89  E-value=1.4e-22  Score=137.40  Aligned_cols=87  Identities=18%  Similarity=0.186  Sum_probs=77.5

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHH-HHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWK-IQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~-~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      +.+|||+++.+++.+   +++++.+.|+|+++||+|||++++||++|++ .+.|.++    ..+|.++|||++|+|+++|
T Consensus         6 ~~~mka~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~----~~~P~v~GhE~~G~V~~vG   78 (374)
T 1cdo_A            6 VIKCKAAVAWEANKP---LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK----DGFPVVLGHEGAGIVESVG   78 (374)
T ss_dssp             CEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT----TSCSEECCCCEEEEEEEEC
T ss_pred             cceeEEEEEecCCCC---eEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC----CCCCcccCccceEEEEEEC
Confidence            457999999887655   8889999999999999999999999999999 8887643    3578999999999999999


Q ss_pred             CCCCccCCCCEEEee
Q 040376           83 ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~   97 (100)
                      ++|++|++||||++.
T Consensus        79 ~~V~~~~vGdrV~~~   93 (374)
T 1cdo_A           79 PGVTEFQPGEKVIPL   93 (374)
T ss_dssp             TTCCSCCTTCEEEEC
T ss_pred             CCCccCCCCCEEEeC
Confidence            999999999999875

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=6.8e-23  Score=138.44  Aligned_cols=91  Identities=14%  Similarity=0.205  Sum_probs=75.7

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCC-CCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeec
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPT-PSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCEL   82 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~-~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG   82 (100)
                      +.+|||+++++++.+   +++++.+.|+ |+++||+||+++++||++|++.+.|.++......+|.++|||++|+|+++|
T Consensus        13 ~~~mka~~~~~~g~~---l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG   89 (359)
T 1h2b_A           13 VERLKAARLHEYNKP---LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVA   89 (359)
T ss_dssp             ----CEEEESSTTSC---CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEEC
T ss_pred             hhhceEEEEecCCCC---cEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEEC
Confidence            346999999987654   8899999999 999999999999999999999998865300023578999999999999999


Q ss_pred             CCCCccCCCCEEEee
Q 040376           83 ESFNNFCPSRTYFDV   97 (100)
Q Consensus        83 ~~v~~~~~Gd~V~~~   97 (100)
                      +++++|++||||++.
T Consensus        90 ~~v~~~~vGdrV~~~  104 (359)
T 1h2b_A           90 EGVEGLEKGDPVILH  104 (359)
T ss_dssp             TTCCSCCTTCEEEEC
T ss_pred             CCCCCCCCCCEEEeC
Confidence            999999999999764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.88  E-value=2.2e-22  Score=134.05  Aligned_cols=86  Identities=20%  Similarity=0.186  Sum_probs=77.9

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++++ +.+++++.+.|+|+++||+||+++++||++|++.+.|.++.  ...+|.++|||++|+|+++|  ++
T Consensus         1 MkA~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~E~~G~V~~~G--v~   75 (324)
T 3nx4_A            1 MQALILEQQDGK-TLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKI--IRHFPMIPGIDFAGTVHASE--DP   75 (324)
T ss_dssp             CEEEEEEESSSS-EEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTC--CCSSSBCCCSEEEEEEEEES--ST
T ss_pred             CceEEEecCCCC-ceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCC--CCCCCccccceeEEEEEEeC--CC
Confidence            899999999887 78999999999999999999999999999999999987642  35788999999999999998  57


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||++.
T Consensus        76 ~~~vGdrV~~~   86 (324)
T 3nx4_A           76 RFHAGQEVLLT   86 (324)
T ss_dssp             TCCTTCEEEEE
T ss_pred             CCCCCCEEEEc
Confidence            89999999864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.88  E-value=3.1e-22  Score=135.83  Aligned_cols=94  Identities=20%  Similarity=0.258  Sum_probs=79.7

Q ss_pred             ccceeeEEEcccCCCCcceEE-eeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCC------------CCCCCCCcc
Q 040376            4 KPLMHAVQYNSYGGGAADLKH-VELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRP------------FLPRKFPCI   69 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~-~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~------------~~~~~~p~~   69 (100)
                      +.+|||+++.+++.+ +.+++ ++.+.|.+ ++|||+||++++|||++|++.+.|....            .....+|.+
T Consensus        19 ~~~mka~~~~~~g~~-~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~v   97 (375)
T 2vn8_A           19 YFQSMAWVIDKYGKN-EVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLT   97 (375)
T ss_dssp             CCCEEEEEBSSCCSG-GGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSBC
T ss_pred             CccceeEEeccCCCc-cceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCcc
Confidence            446999999988876 77899 89999985 9999999999999999999998875320            011237899


Q ss_pred             ccccceEEEEeecCCCCccCCCCEEEeec
Q 040376           70 PGILVLPLIFCELESFNNFCPSRTYFDVY   98 (100)
Q Consensus        70 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~   98 (100)
                      +|||++|+|+++|+++++|++||||++..
T Consensus        98 ~G~E~~G~V~~vG~~V~~~~vGDrV~~~~  126 (375)
T 2vn8_A           98 LGRDVSGVVMECGLDVKYFKPGDEVWAAV  126 (375)
T ss_dssp             CCCEEEEEEEEECTTCCSCCTTCEEEEEC
T ss_pred             cceeeeEEEEEeCCCCCCCCCCCEEEEec
Confidence            99999999999999999999999998753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.88  E-value=3.1e-22  Score=134.81  Aligned_cols=90  Identities=18%  Similarity=0.158  Sum_probs=74.8

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhC-CCCCCCCCCCCccccccceEEEE
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG-QLRPFLPRKFPCIPGILVLPLIF   79 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g-~~~~~~~~~~p~~~G~e~~G~V~   79 (100)
                      |++  +|||++++++    ..+++++.+.|.|+++||+||+++++||++|++.+.+ .+.. ....+|.++|||++|+|+
T Consensus         1 m~~--~mka~~~~~~----~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~-~~~~~p~v~G~E~~G~V~   73 (352)
T 1e3j_A            1 MAS--DNLSAVLYKQ----NDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIAD-FIVKDPMVIGHEASGTVV   73 (352)
T ss_dssp             -----CCEEEEEEET----TEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSS-CBCCSCEECCCEEEEEEE
T ss_pred             Ccc--cCEEEEEEcC----CcEEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCcc-ccCCCCccccccceEEEE
Confidence            554  5999999874    4488999999999999999999999999999998874 3321 123578999999999999


Q ss_pred             eecCCCCccCCCCEEEee
Q 040376           80 CELESFNNFCPSRTYFDV   97 (100)
Q Consensus        80 ~vG~~v~~~~~Gd~V~~~   97 (100)
                      ++|+++++|++||||++.
T Consensus        74 ~vG~~v~~~~vGdrV~~~   91 (352)
T 1e3j_A           74 KVGKNVKHLKKGDRVAVE   91 (352)
T ss_dssp             EECTTCCSCCTTCEEEEC
T ss_pred             EeCCCCCCCCCCCEEEEc
Confidence            999999999999999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.88  E-value=1.9e-22  Score=135.64  Aligned_cols=88  Identities=24%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhC-CCCCCCCCCCCccccccceEEEEeecCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG-QLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g-~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      +||++++.+++.   .+++++.+.|.|+++||+||+++++||++|++.+.| .++. ....+|.++|||++|+|+++|++
T Consensus         4 ~mka~~~~~~g~---~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~~~p~v~G~E~~G~V~~vG~~   79 (348)
T 2d8a_A            4 KMVAIMKTKPGY---GAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQ-SRIKPPQIMGHEVAGEVVEIGPG   79 (348)
T ss_dssp             EEEEEEECSSSS---SCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHH-HHCCSSEECCCEEEEEEEEECTT
T ss_pred             cceEEEEECCCC---CEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCc-ccCCCCCccCccceEEEEEECCC
Confidence            599999988763   388999999999999999999999999999999988 3320 01357899999999999999999


Q ss_pred             CCccCCCCEEEee
Q 040376           85 FNNFCPSRTYFDV   97 (100)
Q Consensus        85 v~~~~~Gd~V~~~   97 (100)
                      +++|++||||++.
T Consensus        80 v~~~~vGdrV~~~   92 (348)
T 2d8a_A           80 VEGIEVGDYVSVE   92 (348)
T ss_dssp             CCSCCTTCEEEEC
T ss_pred             CCcCCCCCEEEEc
Confidence            9999999999875

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.88  E-value=1.6e-22  Score=136.62  Aligned_cols=90  Identities=16%  Similarity=0.088  Sum_probs=76.7

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCC--CCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCC---------ccccccc
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPS--KDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFP---------CIPGILV   74 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~--~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p---------~~~G~e~   74 (100)
                      +||++++++++.+.+.+++++.+.|.|.  +|||+|||++++||++|++.+.|.++.  ...+|         .++|||+
T Consensus         3 ~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            3 TAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPS--KPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             EEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSC--CCCCBSTTCCSSCBEECCSCC
T ss_pred             eEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCC--CCCCCccccccCcccccCcee
Confidence            5999999987753234788888888876  999999999999999999999986542  22455         8999999


Q ss_pred             eEEEEeecCCCCccCCCCEEEee
Q 040376           75 LPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        75 ~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      +|+|+++|+++++|++||||++.
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~  103 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPS  103 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEES
T ss_pred             EEEEEEeCCCCCcCCCCCEEEec
Confidence            99999999999999999999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.88  E-value=3.9e-22  Score=134.10  Aligned_cols=88  Identities=24%  Similarity=0.254  Sum_probs=76.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCC-----CCCCCCCccccccceEEEEee
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP-----FLPRKFPCIPGILVLPLIFCE   81 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-----~~~~~~p~~~G~e~~G~V~~v   81 (100)
                      |||+++++++.+   +++++.+.|.|+++||+||+.+++||++|++.+.|.++.     .....+|.++|||++|+|+++
T Consensus         1 Mka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   77 (347)
T 1jvb_A            1 MRAVRLVEIGKP---LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (347)
T ss_dssp             CEEEEECSTTSC---CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEecCCCC---eEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEE
Confidence            799999987654   889999999999999999999999999999998876431     002357899999999999999


Q ss_pred             cCCCCccCCCCEEEee
Q 040376           82 LESFNNFCPSRTYFDV   97 (100)
Q Consensus        82 G~~v~~~~~Gd~V~~~   97 (100)
                      |+++++|++||||++.
T Consensus        78 G~~v~~~~vGdrV~~~   93 (347)
T 1jvb_A           78 GDEVVGYSKGDLVAVN   93 (347)
T ss_dssp             CTTCCSCCTTCEEEEC
T ss_pred             CCCCCCCCCCCEEEeC
Confidence            9999999999999754

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.88  E-value=1.4e-22  Score=136.11  Aligned_cols=88  Identities=20%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++.+   +++++.+.|.|++|||+||+++++||++|++.+.|.++......+|.++|||++|+|+++|++++
T Consensus         1 Mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   77 (343)
T 2dq4_A            1 MRALAKLAPEEG---LTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVR   77 (343)
T ss_dssp             CEEEEECSSSSS---CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CeEEEEeCCCCc---EEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCC
Confidence            799999987654   88999999999999999999999999999999988542000135789999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||++.
T Consensus        78 ~~~vGdrV~~~   88 (343)
T 2dq4_A           78 RPQVGDHVSLE   88 (343)
T ss_dssp             SSCTTCEEEEC
T ss_pred             cCCCCCEEEEC
Confidence            99999999874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.87  E-value=8.6e-22  Score=133.41  Aligned_cols=87  Identities=10%  Similarity=0.081  Sum_probs=76.7

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +||+..+..++.+ +.+++.+.+.|.|+++||+|||.++|||++|++.+.|.+.   ...+|.++|||++|+|+++|++|
T Consensus        14 ~mk~~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~V   89 (366)
T 1yqd_A           14 PVKAFGWAARDQS-GHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWG---FSMYPLVPGHEIVGEVTEVGSKV   89 (366)
T ss_dssp             SEEEEEEEECSTT-CCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSS---CCCSSBCCCCCEEEEEEEECTTC
T ss_pred             CeeEEEEEEcCCC-CCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCC---CCCCCEecccceEEEEEEECCCC
Confidence            5777777766665 6799999999999999999999999999999999988654   24578999999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      ++|++||||+.
T Consensus        90 ~~~~vGDrV~~  100 (366)
T 1yqd_A           90 KKVNVGDKVGV  100 (366)
T ss_dssp             CSCCTTCEEEE
T ss_pred             CcCCCCCEEEE
Confidence            99999999974

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.87  E-value=7.4e-22  Score=132.95  Aligned_cols=82  Identities=17%  Similarity=0.197  Sum_probs=73.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHH-HHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWK-IQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~-~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      |||+++++++.    +++++.+.|.|+++||+|||++++||++|++ ...|.++    ..+|.++|||++|+|+++|+++
T Consensus         1 MkA~~~~~~~~----~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~----~~~p~v~G~E~~G~V~~vG~~v   72 (352)
T 3fpc_A            1 MKGFAMLSIGK----VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG----ERHNMILGHEAVGEVVEVGSEV   72 (352)
T ss_dssp             CEEEEEEETTE----EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC----CCSSEECCCEEEEEEEEECTTC
T ss_pred             CeEEEEccCCC----ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC----CCCCcccCCcceEEEEEECCCC
Confidence            89999988643    7888999999999999999999999999999 5566543    3678999999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      ++|++||||++
T Consensus        73 ~~~~vGdrV~~   83 (352)
T 3fpc_A           73 KDFKPGDRVVV   83 (352)
T ss_dssp             CSCCTTCEEEE
T ss_pred             CcCCCCCEEEE
Confidence            99999999985

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.87  E-value=6e-22  Score=133.65  Aligned_cols=89  Identities=18%  Similarity=0.140  Sum_probs=75.2

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .+|||++++++    ..+++++.+.|+|+++||+||++++|||++|++.+.+.........+|.++|||++|+|+++|++
T Consensus         6 ~~mka~~~~~~----~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~   81 (356)
T 1pl8_A            6 PNNLSLVVHGP----GDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSS   81 (356)
T ss_dssp             CCCEEEEEEET----TEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTT
T ss_pred             cCceEEEEecC----CcEEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCC
Confidence            45999999874    44889999999999999999999999999999988753211012357899999999999999999


Q ss_pred             CCccCCCCEEEee
Q 040376           85 FNNFCPSRTYFDV   97 (100)
Q Consensus        85 v~~~~~Gd~V~~~   97 (100)
                      |++|++||||++.
T Consensus        82 V~~~~vGdrV~~~   94 (356)
T 1pl8_A           82 VKHLKPGDRVAIE   94 (356)
T ss_dssp             CCSCCTTCEEEEC
T ss_pred             CCCCCCCCEEEEe
Confidence            9999999999864

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.87  E-value=1.2e-21  Score=132.86  Aligned_cols=85  Identities=14%  Similarity=0.270  Sum_probs=74.5

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +||++...+++   +.+++++.+.|.|+++||+|||++++||++|++.+.|.++   ...+|.++|||++|+|+++|++|
T Consensus        22 ~~~a~~~~~~~---~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~P~v~GhE~~G~V~~vG~~V   95 (369)
T 1uuf_A           22 KIKAVGAYSAK---QPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWA---GTVYPCVPGHEIVGRVVAVGDQV   95 (369)
T ss_dssp             -CEEEEBSSTT---SCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTS---CCCSSBCCCCCEEEEEEEECTTC
T ss_pred             eEEEEEEcCCC---CCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCC---CCCCCeecccCceEEEEEECCCC
Confidence            57888876554   4499999999999999999999999999999999988654   23578999999999999999999


Q ss_pred             CccCCCCEEEe
Q 040376           86 NNFCPSRTYFD   96 (100)
Q Consensus        86 ~~~~~Gd~V~~   96 (100)
                      ++|++||||++
T Consensus        96 ~~~~vGDrV~~  106 (369)
T 1uuf_A           96 EKYAPGDLVGV  106 (369)
T ss_dssp             CSCCTTCEEEE
T ss_pred             CCCCCCCEEEE
Confidence            99999999985

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.87  E-value=7.5e-22  Score=132.58  Aligned_cols=87  Identities=17%  Similarity=0.182  Sum_probs=72.0

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++++++.+   +++++.+.|.|+++||+||+++++||++|++.+.|.++. ....+|.++|||++|+|+++|++ 
T Consensus         3 ~mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~p~i~G~E~~G~V~~vG~~-   77 (344)
T 2h6e_A            3 KSKAALLKKFSEP---LSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAK-QGFRLPIILGHENAGTIVEVGEL-   77 (344)
T ss_dssp             EEEBCEECSCCC--------EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCC-TTCCSSEECCCCEEEEEEEECTT-
T ss_pred             eeEEEEEecCCCC---CeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcc-cCCCCCccccccceEEEEEECCC-
Confidence            5999999987644   888899999999999999999999999999999886531 12357899999999999999999 


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||||++.
T Consensus        78 ~~~~~GdrV~~~   89 (344)
T 2h6e_A           78 AKVKKGDNVVVY   89 (344)
T ss_dssp             CCCCTTCEEEEC
T ss_pred             CCCCCCCEEEEC
Confidence            999999999764

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.86  E-value=1.6e-21  Score=132.58  Aligned_cols=85  Identities=13%  Similarity=0.096  Sum_probs=75.8

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +||++++++++.   .+++++.+.|+|+++||+|||++++||++|++.+.|.++   ...+|.++|||++|+|+++| +|
T Consensus        17 ~mka~~~~~~g~---~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~~P~v~GhE~~G~V~~vG-~V   89 (380)
T 1vj0_A           17 KAHAMVLEKFNQ---PLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDP---RVPLPIILGHEGAGRVVEVN-GE   89 (380)
T ss_dssp             EEEEEEBCSTTS---CCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEEES-SC
T ss_pred             heEEEEEecCCC---CeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCC---CCCCCcccCcCcEEEEEEeC-Cc
Confidence            699999998763   488999999999999999999999999999999988653   24578999999999999999 99


Q ss_pred             C------ccCCCCEEEee
Q 040376           86 N------NFCPSRTYFDV   97 (100)
Q Consensus        86 ~------~~~~Gd~V~~~   97 (100)
                      +      +|++||||++.
T Consensus        90 ~~~~~~~~~~vGdrV~~~  107 (380)
T 1vj0_A           90 KRDLNGELLKPGDLIVWN  107 (380)
T ss_dssp             CBCTTSCBCCTTCEEEEC
T ss_pred             cccccCCCCCCCCEEEEc
Confidence            9      99999999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.86  E-value=1.3e-21  Score=130.62  Aligned_cols=88  Identities=19%  Similarity=0.207  Sum_probs=76.1

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .+|||+++++++++ +.+++++.+.|.|+++||+||++++|||++|++.+.|.++.  ...+|.++|||++|+|+++  +
T Consensus         3 ~~mka~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~E~~G~V~~~--~   77 (330)
T 1tt7_A            3 TLFQALQAEKNADD-VSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI--VREYPLILGIDAAGTVVSS--N   77 (330)
T ss_dssp             CEEEEEEECCGGGS-CCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTT--CSSCSEECCSEEEEEEEEC--S
T ss_pred             CcceEEEEecCCCC-cceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCC--cCCCCccccceEEEEEEEc--C
Confidence            46999999988754 56899999999999999999999999999999998886431  2457899999999999996  5


Q ss_pred             CCccCCCCEEEee
Q 040376           85 FNNFCPSRTYFDV   97 (100)
Q Consensus        85 v~~~~~Gd~V~~~   97 (100)
                      +++|++||||++.
T Consensus        78 v~~~~vGdrV~~~   90 (330)
T 1tt7_A           78 DPRFAEGDEVIAT   90 (330)
T ss_dssp             STTCCTTCEEEEE
T ss_pred             CCCCCCCCEEEEc
Confidence            6889999999864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.86  E-value=2.7e-21  Score=130.51  Aligned_cols=83  Identities=13%  Similarity=0.131  Sum_probs=73.9

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCC---CccccccceEEEEeecC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF---PCIPGILVLPLIFCELE   83 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~---p~~~G~e~~G~V~~vG~   83 (100)
                      |||+++++++.+   +++++.+.|.|+++||+||+++++||++|++++.|.++   ...+   |.++|||++| |+++|+
T Consensus         1 MkA~~~~~~~~~---l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~~~~~p~v~G~E~~G-V~~vG~   73 (357)
T 2b5w_A            1 MKAIAVKRGEDR---PVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHG---GFPEGEDHLVLGHEAVG-VVVDPN   73 (357)
T ss_dssp             CEEEEEETTCSS---CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCST---TSCTTCSEEECCSEEEE-EEEECT
T ss_pred             CeEEEEeCCCCc---eEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCC---CCCCCCCCcccCceeEE-EEEECC
Confidence            799999887653   88999999999999999999999999999999998654   1345   8999999999 999999


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      + ++|++||||++.
T Consensus        74 ~-~~~~vGdrV~~~   86 (357)
T 2b5w_A           74 D-TELEEGDIVVPT   86 (357)
T ss_dssp             T-SSCCTTCEEEEC
T ss_pred             C-CCCCCCCEEEEC
Confidence            9 999999999875

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.86  E-value=2.5e-21  Score=134.32  Aligned_cols=97  Identities=11%  Similarity=0.088  Sum_probs=77.3

Q ss_pred             CCcccceeeEEEcccC------------CCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCC----------
Q 040376            1 MAGKPLMHAVQYNSYG------------GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQL----------   58 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~------------~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~----------   58 (100)
                      |+.+.+|||+++.+.+            ++...+++++.+.|.|+++||+|||.+++||++|++...+..          
T Consensus        25 ~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~  104 (456)
T 3krt_A           25 LPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY  104 (456)
T ss_dssp             SCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhc
Confidence            5567899999999752            111468999999999999999999999999999987653211          


Q ss_pred             ---CC-CCCCCCC-ccccccceEEEEeecCCCCccCCCCEEEee
Q 040376           59 ---RP-FLPRKFP-CIPGILVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        59 ---~~-~~~~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                         .. .....+| .++|||++|+|+++|+++++|++||||++.
T Consensus       105 g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~  148 (456)
T 3krt_A          105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAH  148 (456)
T ss_dssp             HTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             cccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEe
Confidence               00 0012466 699999999999999999999999999874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.86  E-value=3.8e-21  Score=131.68  Aligned_cols=90  Identities=14%  Similarity=0.148  Sum_probs=77.2

Q ss_pred             eeeEEEcccCCCCc-------------------------ceEEeeccCCC-CCCCcEEEEEeEeeeChhhHHHHhCCCCC
Q 040376            7 MHAVQYNSYGGGAA-------------------------DLKHVELPVPT-PSKDEVLLKLEATALNPVDWKIQKGQLRP   60 (100)
Q Consensus         7 ~ka~~~~~~~~~~~-------------------------~~~~~~~~~p~-~~~~ev~v~v~~~~l~~~d~~~~~g~~~~   60 (100)
                      |||++++.++.+ +                         .+++++.+.|. |+++||+|||.+++||++|++.+.|....
T Consensus         3 m~a~~~~~~~~p-~~~~~~~~~~~~~~~~m~a~~~~~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~   81 (404)
T 3ip1_A            3 LRAVRLHAKWDP-RPEFKLGPKDIEGKLTWLGSKVWRYPEVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEG   81 (404)
T ss_dssp             EEEEEEEEEECC-CTTCCCCTTCBTTTBBSCGGGTEEEEEEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTS
T ss_pred             ceEEEecCCCCC-CCCCCCCchhhhhhhhcceEEEEeCCceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCc
Confidence            799999887776 4                         68889999999 99999999999999999999998864211


Q ss_pred             ----CCCCCCCccccccceEEEEeecCCC------CccCCCCEEEee
Q 040376           61 ----FLPRKFPCIPGILVLPLIFCELESF------NNFCPSRTYFDV   97 (100)
Q Consensus        61 ----~~~~~~p~~~G~e~~G~V~~vG~~v------~~~~~Gd~V~~~   97 (100)
                          .....+|.++|||++|+|+++|+++      ++|++||||++.
T Consensus        82 ~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~vGdrV~~~  128 (404)
T 3ip1_A           82 YILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAE  128 (404)
T ss_dssp             BBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECCTTCEEEEC
T ss_pred             cccccccCCCCcccCccceEEEEEECCCccccccCCCCCCCCEEEEC
Confidence                0123678999999999999999999      899999999874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.85  E-value=2.1e-21  Score=134.23  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=75.4

Q ss_pred             cccceeeEEEcccC----------CCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHh----------------C
Q 040376            3 GKPLMHAVQYNSYG----------GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK----------------G   56 (100)
Q Consensus         3 ~~~~~ka~~~~~~~----------~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~----------------g   56 (100)
                      ++.+|||+++..++          .+.+.+++++.+.|.|++|||+|||+++|||++|++...                +
T Consensus        21 ~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~~g  100 (447)
T 4a0s_A           21 VPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQG  100 (447)
T ss_dssp             CCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHTTC
T ss_pred             CChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcccC
Confidence            46789999999876          111358999999999999999999999999999975432                1


Q ss_pred             CCCCCCCCCCC-ccccccceEEEEeecCCCCccCCCCEEEee
Q 040376           57 QLRPFLPRKFP-CIPGILVLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        57 ~~~~~~~~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      .+.  ....+| .++|||++|+|+++|++|++|++||||++.
T Consensus       101 ~~~--~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~  140 (447)
T 4a0s_A          101 GWA--TRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVH  140 (447)
T ss_dssp             GGG--GGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEEC
T ss_pred             ccc--cccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEe
Confidence            111  112456 699999999999999999999999999875

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.85  E-value=5.6e-21  Score=130.55  Aligned_cols=84  Identities=17%  Similarity=0.116  Sum_probs=74.5

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCC-CC-----CcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEE
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTP-SK-----DEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIF   79 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~-~~-----~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~   79 (100)
                      +|||++++++    ..+++++.+.|.| ++     +||+|||++++||++|++.+.|.+    ...+|.++|||++|+|+
T Consensus         2 ~MkA~~~~~~----~~l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~----~~~~p~v~GhE~~G~V~   73 (398)
T 2dph_A            2 GNKSVVYHGT----RDLRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRF----IVPKGHVLGHEITGEVV   73 (398)
T ss_dssp             CEEEEEEEET----TEEEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSS----CCCTTCBCCCCEEEEEE
T ss_pred             ccEEEEEEcC----CCEEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCC----CCCCCcccCCceEEEEE
Confidence            5999999874    3488999999987 68     999999999999999999998863    24678999999999999


Q ss_pred             eecCCCCccCCCCEEEee
Q 040376           80 CELESFNNFCPSRTYFDV   97 (100)
Q Consensus        80 ~vG~~v~~~~~Gd~V~~~   97 (100)
                      ++|++|++|++||||++.
T Consensus        74 ~vG~~v~~~~vGDrV~~~   91 (398)
T 2dph_A           74 EKGSDVELMDIGDLVSVP   91 (398)
T ss_dssp             EECTTCCSCCTTCEEECC
T ss_pred             EECCCCCCCCCCCEEEEc
Confidence            999999999999999863

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.85  E-value=1e-20  Score=129.15  Aligned_cols=83  Identities=13%  Similarity=0.100  Sum_probs=73.8

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCC-CCc------EEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEE
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPS-KDE------VLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLI   78 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~-~~e------v~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V   78 (100)
                      +|||+++.++    ..+++++.+.|.|. ++|      |+|||++++||++|++++.|.+.    ..+|.++|||++|+|
T Consensus         2 ~Mka~~~~~~----~~l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----~~~p~v~GhE~~G~V   73 (398)
T 1kol_A            2 GNRGVVYLGS----GKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT----AQVGLVLGHEITGEV   73 (398)
T ss_dssp             CEEEEEEEET----TEEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC----CCTTCBCCCCEEEEE
T ss_pred             ccEEEEEecC----CceEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC----CCCCcccCcccEEEE
Confidence            5999998864    34889999999987 888      99999999999999999988642    356899999999999


Q ss_pred             EeecCCCCccCCCCEEEe
Q 040376           79 FCELESFNNFCPSRTYFD   96 (100)
Q Consensus        79 ~~vG~~v~~~~~Gd~V~~   96 (100)
                      +++|++|++|++||||+.
T Consensus        74 ~~vG~~v~~~~vGDrV~~   91 (398)
T 1kol_A           74 IEKGRDVENLQIGDLVSV   91 (398)
T ss_dssp             EEECTTCCSCCTTCEEEC
T ss_pred             EEECCCCCcCCCCCEEEE
Confidence            999999999999999985

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.85  E-value=6.8e-21  Score=127.07  Aligned_cols=87  Identities=13%  Similarity=0.166  Sum_probs=75.3

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +||++++++++.+ +.+++++.+.|.|+++||+||+++++||++|++.+.|.++.  ...+|.++|||++|+|+++  ++
T Consensus         3 ~mka~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~v~G~E~~G~V~~~--~v   77 (328)
T 1xa0_A            3 AFQAFVVNKTETE-FTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKI--VKTYPFVPGIDLAGVVVSS--QH   77 (328)
T ss_dssp             EEEEEEEEEETTE-EEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSS--CCSSSBCCCSEEEEEEEEC--CS
T ss_pred             cceEEEEecCCCc-ceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCC--CCCCCcccCcceEEEEEec--CC
Confidence            5999999988764 56889999999999999999999999999999998886431  2457899999999999995  57


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||||++.
T Consensus        78 ~~~~vGdrV~~~   89 (328)
T 1xa0_A           78 PRFREGDEVIAT   89 (328)
T ss_dssp             SSCCTTCEEEEE
T ss_pred             CCCCCCCEEEEc
Confidence            899999999864

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.84  E-value=3.6e-21  Score=130.93  Aligned_cols=94  Identities=21%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCC------------CC-------
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLR------------PF-------   61 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~------------~~-------   61 (100)
                      |+.+..||+++....  + ..+++++.+.|.|++|||+||+++++||++|++.+.|.+.            +.       
T Consensus         2 m~~~~~mka~v~~~~--~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~   78 (379)
T 3iup_A            2 MHSALQLRSRIKSSG--E-LELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPE   78 (379)
T ss_dssp             -CEEEEEEEEECTTS--E-EEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCH
T ss_pred             CCchhhHHHHHhcCC--C-CceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcc
Confidence            666778999887542  2 4589999999999999999999999999999999988521            00       


Q ss_pred             -------CCCCCCccccccceEEEEeecCCC-CccCCCCEEEee
Q 040376           62 -------LPRKFPCIPGILVLPLIFCELESF-NNFCPSRTYFDV   97 (100)
Q Consensus        62 -------~~~~~p~~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~   97 (100)
                             ....+|.++|||++|+|+++|++| ++|++||||++.
T Consensus        79 ~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~  122 (379)
T 3iup_A           79 GAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAI  122 (379)
T ss_dssp             HHHHHHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEEC
T ss_pred             ccccccccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEec
Confidence                   023468899999999999999999 899999999875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.83  E-value=6.4e-20  Score=123.62  Aligned_cols=93  Identities=11%  Similarity=0.082  Sum_probs=74.4

Q ss_pred             cccceeeEEE-ccc---CCC-CcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCC--CCCCCCCCCccccccc
Q 040376            3 GKPLMHAVQY-NSY---GGG-AADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQL--RPFLPRKFPCIPGILV   74 (100)
Q Consensus         3 ~~~~~ka~~~-~~~---~~~-~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~--~~~~~~~~p~~~G~e~   74 (100)
                      ++.+||++++ +.+   |.+ .+.+++++.+.|.| ++|||+|||+++|||+.|+..+.+..  ....+..+|.++|||+
T Consensus         5 ~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E~   84 (357)
T 2zb4_A            5 AAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGG   84 (357)
T ss_dssp             -CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEEE
T ss_pred             ccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccccE
Confidence            3557999999 555   432 26799999999999 99999999999999999998776521  1101345788999999


Q ss_pred             eEEEEeecCCCCccCCCCEEEee
Q 040376           75 LPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        75 ~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      +|+|++  +++++|++||||++.
T Consensus        85 ~G~V~~--~~v~~~~vGdrV~~~  105 (357)
T 2zb4_A           85 IGIIEE--SKHTNLTKGDFVTSF  105 (357)
T ss_dssp             EEEEEE--ECSTTCCTTCEEEEE
T ss_pred             EEEEEe--cCCCCCCCCCEEEec
Confidence            999999  889999999999864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.81  E-value=2.9e-19  Score=119.51  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=70.0

Q ss_pred             CCcccceeeEEEccc--C--CCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCcccccc---
Q 040376            1 MAGKPLMHAVQYNSY--G--GGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGIL---   73 (100)
Q Consensus         1 m~~~~~~ka~~~~~~--~--~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e---   73 (100)
                      |+. .+||++++++.  |  ++ +.+++++.+.|.|++|||+|||++++||+.|+....+...    ...|.++|||   
T Consensus         3 M~~-~~mka~v~~~~~~g~~~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~----~~~p~~~G~e~g~   76 (336)
T 4b7c_A            3 MTS-QINRQYQLAQRPSGLPGR-DTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS----YIPPVGIGEVMRA   76 (336)
T ss_dssp             ----CEEEEEEECSCCSSSCCT-TSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC----SSCCCCTTSBCCC
T ss_pred             CCc-ccccEEEEEecCCCCCCC-CceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc----cCCCCCCCcccCC
Confidence            443 46999999862  3  33 7899999999999999999999999999999988876432    2345555665   


Q ss_pred             -ceEEEEeecCCCCccCCCCEEEee
Q 040376           74 -VLPLIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        74 -~~G~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                       ++|+|++  +++++|++||||++.
T Consensus        77 ~~~G~V~~--~~v~~~~vGdrV~~~   99 (336)
T 4b7c_A           77 LGVGKVLV--SKHPGFQAGDYVNGA   99 (336)
T ss_dssp             EEEEEEEE--ECSTTCCTTCEEEEE
T ss_pred             ceEEEEEe--cCCCCCCCCCEEecc
Confidence             8999999  458899999999863

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.81  E-value=1.1e-19  Score=123.03  Aligned_cols=82  Identities=12%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCC-CcEEEEEeEeeeChhhHHHHhC--CCCCCCCCCC---CccccccceEEEEe
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSK-DEVLLKLEATALNPVDWKIQKG--QLRPFLPRKF---PCIPGILVLPLIFC   80 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~-~ev~v~v~~~~l~~~d~~~~~g--~~~~~~~~~~---p~~~G~e~~G~V~~   80 (100)
                      |||+++++++.+   +++++.+.|.|++ +||+|||+++|||++|++.+.|  .++   ...+   |.++|||++|+|++
T Consensus         1 MkA~~~~~~g~~---l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~---~~~~~~~p~v~G~E~~G~V~~   74 (366)
T 2cdc_A            1 MKAIIVKPPNAG---VQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLS---TLPKGKDFLVLGHEAIGVVEE   74 (366)
T ss_dssp             CEEEEECTTSCC---CEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC----------CCSCEECCSEEEEEECS
T ss_pred             CeEEEEeCCCCc---eEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCC---CCCcCCCCCcCCcceEEEEEe
Confidence            799999887653   8899999999999 9999999999999999999988  543   2345   89999999999999


Q ss_pred             ecCCCCccCCCCEEEee
Q 040376           81 ELESFNNFCPSRTYFDV   97 (100)
Q Consensus        81 vG~~v~~~~~Gd~V~~~   97 (100)
                        ++ ++|++||||++.
T Consensus        75 --~~-~~~~~GDrV~~~   88 (366)
T 2cdc_A           75 --SY-HGFSQGDLVMPV   88 (366)
T ss_dssp             --CC-SSCCTTCEEEEC
T ss_pred             --CC-CCCCCCCEEEEc
Confidence              67 899999999863

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.76  E-value=7e-18  Score=113.09  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=70.6

Q ss_pred             ccceeeEEEccc--CCCCc--ceEEe--eccCCC-CCCCcEEEEEeEeeeChhhHHHHhCCCCCC-CCCCCCccccccce
Q 040376            4 KPLMHAVQYNSY--GGGAA--DLKHV--ELPVPT-PSKDEVLLKLEATALNPVDWKIQKGQLRPF-LPRKFPCIPGILVL   75 (100)
Q Consensus         4 ~~~~ka~~~~~~--~~~~~--~~~~~--~~~~p~-~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~-~~~~~p~~~G~e~~   75 (100)
                      +.+||++++...  +++ .  .++++  +.+.|. |++||||||++++++|+.|+ ...|.+.+. ....+|.++|||++
T Consensus         2 ~~~mka~~m~a~~~~~p-~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~   79 (345)
T 2j3h_A            2 TATNKQVILKDYVSGFP-TESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQ   79 (345)
T ss_dssp             EEEEEEEEECSCBSSSC-CGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCE
T ss_pred             CccceEEEEecCCCCCC-CccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeee
Confidence            346999998876  555 5  68888  788886 89999999999999999886 344543210 01246889999999


Q ss_pred             EEEEe--ecCCCCccCCCCEEEe
Q 040376           76 PLIFC--ELESFNNFCPSRTYFD   96 (100)
Q Consensus        76 G~V~~--vG~~v~~~~~Gd~V~~   96 (100)
                      |++.+  +|+++++|++||||++
T Consensus        80 G~~~~GvV~~~v~~~~vGdrV~~  102 (345)
T 2j3h_A           80 GYGVSRIIESGHPDYKKGDLLWG  102 (345)
T ss_dssp             EEEEEEEEEECSTTCCTTCEEEE
T ss_pred             cceEEEEEecCCCCCCCCCEEEe
Confidence            99999  9999999999999985

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.74  E-value=6.5e-18  Score=123.84  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=72.0

Q ss_pred             eeEEEcccCCCCcceEEeeccC--CCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            8 HAVQYNSYGGGAADLKHVELPV--PTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~--p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ..+.+..+|.+ +.+++++.+.  |+|++|||+|||+++|||++|+++..|.++      .|.++|||++|+|+++|++|
T Consensus       211 ~~l~~~~~G~~-~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~------~~~~lG~E~aG~V~~vG~~V  283 (795)
T 3slk_A          211 WRLEATRPGSL-DGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP------GVASLGSEGAGVVVETGPGV  283 (795)
T ss_dssp             CCEEESSTTSS-TTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS------SCCCSCCCEEEEEEEECSSC
T ss_pred             EEEecCCCCCc-cceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC------CCccccceeEEEEEEeCCCC
Confidence            34566677776 8899988764  568999999999999999999999988653      34579999999999999999


Q ss_pred             CccCCCCEEEeec
Q 040376           86 NNFCPSRTYFDVY   98 (100)
Q Consensus        86 ~~~~~Gd~V~~~~   98 (100)
                      ++|++||||+++.
T Consensus       284 ~~~~vGDrV~~~~  296 (795)
T 3slk_A          284 TGLAPGDRVMGMI  296 (795)
T ss_dssp             CSSCTTCEEEECC
T ss_pred             CcCCCCCEEEEEe
Confidence            9999999998864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.71  E-value=7.2e-17  Score=106.61  Aligned_cols=75  Identities=32%  Similarity=0.487  Sum_probs=63.8

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++.+ +  .+++.+.|.|+++||+||+++++||++|++.+.|.++.  ...+|.++|||++|+|+       
T Consensus         1 Mka~~~~~~g~~-~--~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~i~G~e~~G~V~-------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGP-L--ELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT--RLHPPFIPGMEVVGVVE-------   68 (302)
T ss_dssp             CEEEEECSTTSC-E--EEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCCEEEEEET-------
T ss_pred             CeEEEEcCCCCc-h--heEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCcccceEEEEEE-------
Confidence            799999988776 3  34588899999999999999999999999999986542  23678999999999997       


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                          ||||++.
T Consensus        69 ----GdrV~~~   75 (302)
T 1iz0_A           69 ----GRRYAAL   75 (302)
T ss_dssp             ----TEEEEEE
T ss_pred             ----CcEEEEe
Confidence                9999875

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.70  E-value=1.7e-16  Score=106.03  Aligned_cols=83  Identities=12%  Similarity=0.040  Sum_probs=67.0

Q ss_pred             cceeeEEEccc--CCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEee
Q 040376            5 PLMHAVQYNSY--GGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCE   81 (100)
Q Consensus         5 ~~~ka~~~~~~--~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v   81 (100)
                      .+||++++.++  +.+ .+.+++++.+.|.|++|||+|||++++||+.|+.. .      .+..+|.++|||++|+|++.
T Consensus         6 ~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~------~~~~~p~~~g~e~~G~Vv~~   78 (333)
T 1v3u_A            6 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-S------KRLKEGAVMMGQQVARVVES   78 (333)
T ss_dssp             CEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-T------TTCCTTSBCCCCEEEEEEEE
T ss_pred             ccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-c------CcCCCCcccccceEEEEEec
Confidence            35999999875  432 26799999999999999999999999999998732 1      12356788999999999994


Q ss_pred             cCCCCccCCCCEEEe
Q 040376           82 LESFNNFCPSRTYFD   96 (100)
Q Consensus        82 G~~v~~~~~Gd~V~~   96 (100)
                        ++++|++||||++
T Consensus        79 --~v~~~~vGdrV~~   91 (333)
T 1v3u_A           79 --KNSAFPAGSIVLA   91 (333)
T ss_dssp             --SCTTSCTTCEEEE
T ss_pred             --CCCCCCCCCEEEe
Confidence              6789999999986

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.48  E-value=4.2e-07  Score=73.51  Aligned_cols=74  Identities=20%  Similarity=0.153  Sum_probs=54.4

Q ss_pred             ccCCCCcceEEeeccCCC-CC--CCcEEEEEeEeeeChhhHHHHhCCCCCCC----CCCCCccccccceEEEEeecCCCC
Q 040376           14 SYGGGAADLKHVELPVPT-PS--KDEVLLKLEATALNPVDWKIQKGQLRPFL----PRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus        14 ~~~~~~~~~~~~~~~~p~-~~--~~ev~v~v~~~~l~~~d~~~~~g~~~~~~----~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ..+.. +.+.+.+.+... +.  ++||+|+|+++|+|+.|+++..|.++...    ....|.++|+|++|+|.       
T Consensus      1537 ~~g~l-~sl~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~------- 1608 (2512)
T 2vz8_A         1537 SRGDL-SSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA------- 1608 (2512)
T ss_dssp             STTCT-TSEEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET-------
T ss_pred             CCCCc-CceEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc-------
Confidence            34444 678887766533 33  78999999999999999999998764210    11345789999999882       


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                         +||+|+++.
T Consensus      1609 ---vGdrV~g~~ 1617 (2512)
T 2vz8_A         1609 ---SGRRVMGMV 1617 (2512)
T ss_dssp             ---TSCCEEEEC
T ss_pred             ---cCCEEEEee
Confidence               789998864

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=93.76  E-value=0.048  Score=30.13  Aligned_cols=22  Identities=0%  Similarity=-0.304  Sum_probs=18.0

Q ss_pred             ceEEEEeecCCCC---------ccCCCCEEE
Q 040376           74 VLPLIFCELESFN---------NFCPSRTYF   95 (100)
Q Consensus        74 ~~G~V~~vG~~v~---------~~~~Gd~V~   95 (100)
                      ..|+|+++|++..         ..++||+|+
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl   66 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVI   66 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEE
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEE
Confidence            4799999998642         489999995

>1g31_A GP31; chaperone, CO-chaperonin, groes, in VIVO protein folding, bacteriophage T4; 2.30A {Enterobacteria phage T4} SCOP: b.35.1.1 PDB: 2cgt_O

Probab=93.65  E-value=0.075  Score=30.18  Aligned_cols=23  Identities=4%  Similarity=-0.312  Sum_probs=19.1

Q ss_pred             ceEEEEeecCCCC--ccCCCCEEEe
Q 040376           74 VLPLIFCELESFN--NFCPSRTYFD   96 (100)
Q Consensus        74 ~~G~V~~vG~~v~--~~~~Gd~V~~   96 (100)
                      .-|+|+++|+++.  .+++||+|+-
T Consensus        47 ~~g~VvAVG~g~~~~~vKvGD~Vl~   71 (111)
T 1g31_A           47 ELCVVHSVGPDVPEGFCEVGDLTSL   71 (111)
T ss_dssp             EEEEEEEECTTSCTTSCCTTCEEEE
T ss_pred             ceEEEEEECCCCccccccCCCEEEE
Confidence            5799999998875  3899999963

>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O

Probab=91.00  E-value=0.18  Score=27.95  Aligned_cols=22  Identities=0%  Similarity=-0.226  Sum_probs=17.5

Q ss_pred             ceEEEEeecCCC---------CccCCCCEEE
Q 040376           74 VLPLIFCELESF---------NNFCPSRTYF   95 (100)
Q Consensus        74 ~~G~V~~vG~~v---------~~~~~Gd~V~   95 (100)
                      ..|+|+++|++.         -..++||+|+
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl   66 (97)
T 1pcq_O           36 TRGEVLAVGNGRILENGEVKPLDVKVGDIVI   66 (97)
T ss_dssp             CEEEEEEECSEECTTSSSCEECSCCTTCEEE
T ss_pred             cccEEEEEcCceecCCCCEEecccCCCCEEE
Confidence            579999999763         1389999995

>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A

Probab=90.72  E-value=0.093  Score=29.25  Aligned_cols=22  Identities=0%  Similarity=-0.268  Sum_probs=17.7

Q ss_pred             ceEEEEeecCCCC---------ccCCCCEEE
Q 040376           74 VLPLIFCELESFN---------NFCPSRTYF   95 (100)
Q Consensus        74 ~~G~V~~vG~~v~---------~~~~Gd~V~   95 (100)
                      ..|+|+++|++..         ..++||+|+
T Consensus        41 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl   71 (100)
T 1we3_O           41 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVV   71 (100)
T ss_dssp             SEEEESCCCCCEECTTSCEECCSCCTTCEEE
T ss_pred             cCCEEEEECCCcCCCCCCEEeeecCCCCEEE
Confidence            4799999997631         489999995

>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A

Probab=90.36  E-value=0.21  Score=27.71  Aligned_cols=22  Identities=5%  Similarity=-0.177  Sum_probs=17.5

Q ss_pred             ceEEEEeecCCCC----------ccCCCCEEE
Q 040376           74 VLPLIFCELESFN----------NFCPSRTYF   95 (100)
Q Consensus        74 ~~G~V~~vG~~v~----------~~~~Gd~V~   95 (100)
                      ..|+|+++|++..          ..++||+|+
T Consensus        38 ~~G~VvAVG~G~~~~~G~~~~p~~VkvGD~Vl   69 (99)
T 1p3h_A           38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVI   69 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEE
T ss_pred             ceEEEEEECCCcCcCCCCEEEccccCCCCEEE
Confidence            5799999997531          389999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	1e-09
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	6e-09
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	3e-08
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	6e-08
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	8e-08
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-07
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	5e-07
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	7e-07
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	8e-07
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	1e-06
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	2e-06
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	4e-06
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	6e-06
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	8e-06
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	1e-05
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	1e-05
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	1e-05
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-05
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	3e-05
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	7e-05
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	9e-05
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	2e-04

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 1e-09
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 2  AGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPF 61
          A KP   ++  +    G  DL+    P+P P  +EVLL++ +  +   D    +      
Sbjct: 3  AAKPNNLSLVVH----GPGDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGN 58

Query: 62 LPRKFPCIP 70
             K P + 
Sbjct: 59 FIVKKPMVL 67

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 48.5 bits (114), Expect = 6e-09
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          + AV Y        DL+  + P+P P +DEVLL++    +   D    +         K 
Sbjct: 3  LSAVLY-----KQNDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKD 57

Query: 67 PCIPGILVLPLIFCELESFNNFCP 90
          P + G      +    ++  +   
Sbjct: 58 PMVIGHEASGTVVKVGKNVKHLKK 81

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 46.5 bits (109), Expect = 3e-08
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M AV+    G     L   E+ VP P   +VL+K+EA  +   D  +++G+       + 
Sbjct: 1  MRAVRLVEIGK---PLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57

Query: 67 PCIPGILVLPLIFC 80
            +   + L     
Sbjct: 58 LGVKLPVTLGHEIA 71

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 6e-08
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 6  LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRK 65
          LM AV+   +GG        ++ VP P   +VL+K+ A  +NPV+  I+ G         
Sbjct: 2  LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSG--TYSRKPL 59

Query: 66 FPCIPG 71
           P  PG
Sbjct: 60 LPYTPG 65

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.8 bits (105), Expect = 8e-08
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK 55
          M A      GG    L+ V+LP P   + EV+L++EA  LN  D  ++ 
Sbjct: 1  MKAWVLKRLGG---PLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRL 46

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 44.2 bits (103), Expect = 3e-07
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          + A      G    D +   L +  P  DEVL+K+ AT +   D  ++  +    LP   
Sbjct: 4  IIAAVTPCKGA---DFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVPLPAVL 60

Query: 67 PCIPGI 72
                
Sbjct: 61 GHEGSG 66

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.9 bits (100), Expect = 5e-07
 Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKI 53
            A   N             + +    + +VL+++  +++N  D   
Sbjct: 4  FQAFVVNKTETEFT-AGVQTISMDDLPEGDVLVRVHYSSVNYKDGLA 49

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.0 bits (100), Expect = 7e-07
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M A   ++YG     L+  E+ VP P   +VL+K+EA+ +   D    +G     +    
Sbjct: 6  MKAAVVHAYGA---PLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGD--WPVKPPL 60

Query: 67 PCIPG 71
          P IPG
Sbjct: 61 PFIPG 65

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 42.8 bits (99), Expect = 8e-07
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 7  MHAVQYNSYGGGAA--DLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKG 56
            AV Y  +G        +  E+     + +EV++K   + +NP D    +G
Sbjct: 4  AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQG 55

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 3/62 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
            A      G     L   E+ V  P   EV +K+ ATA+   D     G          
Sbjct: 7  CKAAVAWEAGK---PLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVI 63

Query: 67 PC 68
            
Sbjct: 64 LG 65

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 7/88 (7%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          M              L  +E   P     + +++  A +    D           L  + 
Sbjct: 1  MKGFAMLGIN----KLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVF---EGALGDRK 53

Query: 67 PCIPGILVLPLIFCELESFNNFCPSRTY 94
            I G   +  +        +F P    
Sbjct: 54 NMILGHEAVGEVVEVGSEVKDFKPGDRV 81

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (94), Expect = 4e-06
 Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 8  HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFP 67
            ++++ +GG    L+ VE     P+++E+ ++ +A  +N +D  I+ G   P  P    
Sbjct: 2  TRIEFHKHGG-PEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP--PSLPS 58

Query: 68 CIPGILVLPLIFCELESFNNFCPSRTYFDVY 98
           +       +        +     R  +   
Sbjct: 59 GLGTEAAGIVSKVGSGVKHIKAGDRVVYAQS 89

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 40.3 bits (93), Expect = 6e-06
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 2  AGKPL-MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKI 53
          AGK +   A            L    + V  P   EV +K+ A+ +   D  +
Sbjct: 3  AGKDITCKAAVAWEPHK---PLSLETITVAPPKAHEVRIKILASGICGSDSSV 52

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 39.9 bits (92), Expect = 8e-06
 Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 4/70 (5%)

Query: 2  AGKPL-MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
           GK +   A            L   E+ V  P  +E+ +K+ AT +   D          
Sbjct: 3  VGKVIKCKAAVAWEANK---PLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK 59

Query: 61 FLPRKFPCIP 70
                    
Sbjct: 60 DGFPVVLGHE 69

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 1e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK 55
            A+Q        + +    +      KD VL+K+  + +N  D    K
Sbjct: 4  FQALQAEKNADDVS-VHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGK 51

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.8 bits (92), Expect = 1e-05
 Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 1  MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK 55
          M  K   HA+    +      L + E  +    +  +L+++ +  +   D  + +
Sbjct: 1  MGLK--AHAMVLEKFNQ---PLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFR 50

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 39.4 bits (91), Expect = 1e-05
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 2  AGKPL-MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP 60
          AGK +   A                E+ V  P   EV +K+ AT +   D  +  G L  
Sbjct: 3  AGKVIKCKAAVLWEEKK---PFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT 59

Query: 61 FLPRKFPCIPG 71
           LP        
Sbjct: 60 PLPVIAGHEAA 70

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 39.1 bits (90), Expect = 2e-05
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 2  AGKPL-MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKI 53
           GK +   A      G     L   E+ V  P   EV +++ AT + P D   
Sbjct: 3  QGKVIKCKAAIAWKTGS---PLCIEEIEVSPPKACEVRIQVIATCVCPTDINA 52

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (88), Expect = 3e-05
 Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKI 53
          + A+      G         L      + +V + +  ++LN  D   
Sbjct: 1  LQALLLEQQDGKTL-ASVQTLDESRLPEGDVTVDVHWSSLNYKDALA 46

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.3 bits (85), Expect = 7e-05
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQK 55
          M A     +      LK  E+  PT S  EVL++++A  +   D     
Sbjct: 1  MKAAVVEQFKE---PLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAH 46

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (85), Expect = 9e-05
 Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
             +   S+     + K  +         ++ +K+EA  +   D     G        K 
Sbjct: 7  FEGIAIQSHEDWK-NPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNM---KM 62

Query: 67 PCIPG 71
          P + G
Sbjct: 63 PLVVG 67

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 2e-04
 Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 7  MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKF 66
          + AV   S       L+ +++    P  ++V +++    +   D    + +    +    
Sbjct: 1  IKAVGAYSAK---QPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCV 57

Query: 67 PCI 69
          P  
Sbjct: 58 PGH 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.95
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.94
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.93
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.93
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.93
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.93
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.93
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.93
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.93
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.93
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.92
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.92
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.92
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.91
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.91
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.91
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.9
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.88
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.88
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.87
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.87
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.84
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.81
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.64
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.58
d1p3ha_	99	Chaperonin-10 (GroES) {Mycobacterium tuberculosis	91.99
d1aono_	97	Chaperonin-10 (GroES) {Escherichia coli [TaxId: 56	89.27
d1g31a_	107	GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665	81.69
d1we3o_	96	Chaperonin-10 (GroES) {Thermus thermophilus [TaxId	81.61

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.1e-27  Score=146.85  Aligned_cols=90  Identities=22%  Similarity=0.280  Sum_probs=82.7

Q ss_pred             CcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEee
Q 040376            2 AGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCE   81 (100)
Q Consensus         2 ~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~v   81 (100)
                      +++.+|||+++++++++   +++++.+.|.|++||||||+++++||++|++.++|.++  ....+|.++|||++|+|+++
T Consensus         1 ~~P~tMkA~v~~~~g~p---l~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~--~~~~~P~i~GhE~~G~V~~~   75 (175)
T d1llua1           1 TLPQTMKAAVVHAYGAP---LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWP--VKPPLPFIPGHEGVGYVAAV   75 (175)
T ss_dssp             CCCSEEEEEEBCSTTSC---CEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSS--SCCCSSBCCCSCEEEEEEEE
T ss_pred             CcchhcEEEEEEeCCCC---CEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCcc--ccccCCcCCCCcceEEEEEe
Confidence            46789999999998877   89999999999999999999999999999999999765  24578999999999999999


Q ss_pred             cCCCCccCCCCEEEe
Q 040376           82 LESFNNFCPSRTYFD   96 (100)
Q Consensus        82 G~~v~~~~~Gd~V~~   96 (100)
                      |++++.|++||||+.
T Consensus        76 G~~v~~~~~GdrV~~   90 (175)
T d1llua1          76 GSGVTRVKEGDRVGI   90 (175)
T ss_dssp             CTTCCSCCTTCEEEE
T ss_pred             CCCccccccCCEEEe
Confidence            999999999999975

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.9e-27  Score=140.13  Aligned_cols=90  Identities=30%  Similarity=0.434  Sum_probs=81.7

Q ss_pred             ceeeEEEcccCCCCcceEEe-eccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            6 LMHAVQYNSYGGGAADLKHV-ELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~-~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .|||++++++|++ +.+++. +.+.|.|++|||+||+++++||+.|++.+.|.+..  ...+|.++|+|++|+|+++|++
T Consensus         2 ~MkAv~~~~~G~p-~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~--~~~~p~i~G~e~~G~V~~vG~~   78 (150)
T d1yb5a1           2 LMRAVRVFEFGGP-EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR--KPLLPYTPGSDVAGVIEAVGDN   78 (150)
T ss_dssp             EEEEEEESSCSSG-GGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC--CCCSSBCCCSCEEEEEEEECTT
T ss_pred             ceeEEEEEccCCc-ceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCc--cccccccCccceeeeeEeecce
Confidence            6999999999987 889885 68999999999999999999999999999987763  4567899999999999999999


Q ss_pred             CCccCCCCEEEeec
Q 040376           85 FNNFCPSRTYFDVY   98 (100)
Q Consensus        85 v~~~~~Gd~V~~~~   98 (100)
                      +++|++||||++..
T Consensus        79 v~~~~vGdrV~~~~   92 (150)
T d1yb5a1          79 ASAFKKGDRVFTSS   92 (150)
T ss_dssp             CTTCCTTCEEEESC
T ss_pred             eeccccCccccccc
Confidence            99999999998754

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.93  E-value=5e-26  Score=139.63  Aligned_cols=88  Identities=24%  Similarity=0.254  Sum_probs=79.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCC-----CCCCCCCccccccceEEEEee
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRP-----FLPRKFPCIPGILVLPLIFCE   81 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~-----~~~~~~p~~~G~e~~G~V~~v   81 (100)
                      |||++++++|++   |++++++.|.|+++||+||+.++|||++|+++++|.++.     ....++|.++|||++|+|+++
T Consensus         1 MKA~~~~~~G~p---l~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~   77 (177)
T d1jvba1           1 MRAVRLVEIGKP---LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (177)
T ss_dssp             CEEEEECSTTSC---CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEEeCCCC---CEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeee
Confidence            899999999887   899999999999999999999999999999999987542     123468999999999999999


Q ss_pred             cCCCCccCCCCEEEee
Q 040376           82 LESFNNFCPSRTYFDV   97 (100)
Q Consensus        82 G~~v~~~~~Gd~V~~~   97 (100)
                      |+++++|++||||+..
T Consensus        78 g~~v~~~~~GdrV~~~   93 (177)
T d1jvba1          78 GDEVVGYSKGDLVAVN   93 (177)
T ss_dssp             CTTCCSCCTTCEEEEC
T ss_pred             ccCccccccCceEeee
Confidence            9999999999999754

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.1e-26  Score=135.19  Aligned_cols=86  Identities=17%  Similarity=0.258  Sum_probs=79.3

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCCc
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFNN   87 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   87 (100)
                      +.++++++|++ +.|++++.+.|.|+++||+||+++++||+.|++++.|.++   ...+|.++|+|++|+|+++|+++++
T Consensus         2 ~~i~~~~~G~p-e~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~---~~~~p~~~G~e~~G~V~~vG~~v~~   77 (147)
T d1qora1           2 TRIEFHKHGGP-EVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYP---PPSLPSGLGTEAAGIVSKVGSGVKH   77 (147)
T ss_dssp             EEEEBSSCCSG-GGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CSSSSBCCCSCEEEEEEEECTTCCS
T ss_pred             eEEEEcccCCC-ceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCC---CCcceeeeccccccceeeeeeeccc
Confidence            56788999998 9999999999999999999999999999999999999875   4578899999999999999999999


Q ss_pred             cCCCCEEEee
Q 040376           88 FCPSRTYFDV   97 (100)
Q Consensus        88 ~~~Gd~V~~~   97 (100)
                      |++||||+..
T Consensus        78 ~~vGdrV~~~   87 (147)
T d1qora1          78 IKAGDRVVYA   87 (147)
T ss_dssp             CCTTCEEEES
T ss_pred             ccccceeeee
Confidence            9999999753

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.93  E-value=6.2e-26  Score=141.21  Aligned_cols=86  Identities=19%  Similarity=0.176  Sum_probs=78.8

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|+|+++.+.+++   |++++++.|.|++||||||+.+++||++|++.+.|.++    .++|.++|||++|+|+++|+++
T Consensus         3 ~~~Aav~~~~g~~---l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~----~~~P~i~GHE~~G~V~~vG~~v   75 (194)
T d1f8fa1           3 DIIAAVTPCKGAD---FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP----VPLPAVLGHEGSGIIEAIGPNV   75 (194)
T ss_dssp             EEEEEEBCSTTCC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCEEEEEEEEECTTC
T ss_pred             eeEEEEEcCCCCC---cEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc----ccCCcccccceEEEeeecCccc
Confidence            5899999988776   99999999999999999999999999999999998754    4689999999999999999999


Q ss_pred             CccCCCCEEEeec
Q 040376           86 NNFCPSRTYFDVY   98 (100)
Q Consensus        86 ~~~~~Gd~V~~~~   98 (100)
                      ++|++||||+..+
T Consensus        76 ~~~~vGDrVv~~~   88 (194)
T d1f8fa1          76 TELQVGDHVVLSY   88 (194)
T ss_dssp             CSCCTTCEEEECC
T ss_pred             eeEccCceeeeec
Confidence            9999999997654

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.1e-25  Score=138.59  Aligned_cols=92  Identities=12%  Similarity=0.043  Sum_probs=82.2

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEe
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~   80 (100)
                      |+.|.+|||+++.++++. ..+++++.+.++++++|||||+.++|||++|++.+.|.++   ...+|+++|||++|+|++
T Consensus         1 m~~P~~~ka~~~~~~~~~-~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~---~~~~P~i~GHE~~G~Vv~   76 (192)
T d1piwa1           1 MSYPEKFEGIAIQSHEDW-KNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG---NMKMPLVVGHEIVGKVVK   76 (192)
T ss_dssp             CCTTTCEEEEEECCSSST-TSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTS---CCCSSEECCCCEEEEEEE
T ss_pred             CCCCceeEEEEEeCCCcC-CcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCC---CCCCCcCcccccccchhh
Confidence            899999999999998775 7788888777778999999999999999999999998765   457899999999999999


Q ss_pred             ecCCC-CccCCCCEEEe
Q 040376           81 ELESF-NNFCPSRTYFD   96 (100)
Q Consensus        81 vG~~v-~~~~~Gd~V~~   96 (100)
                      +|+++ +.|++||||..
T Consensus        77 vG~~v~~~~k~GdrV~~   93 (192)
T d1piwa1          77 LGPKSNSGLKVGQRVGV   93 (192)
T ss_dssp             ECTTCCSSCCTTCEEEE
T ss_pred             cccccccccCCCCeeeE
Confidence            99887 67999999953

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.93  E-value=7e-26  Score=141.56  Aligned_cols=86  Identities=21%  Similarity=0.205  Sum_probs=79.1

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .+|||+++.+++++   +++++++.|.|+++|||||+.++|||++|++.++|.++    ..+|.++|||++|+|+++|++
T Consensus         7 ~~~KAaV~~~~g~p---l~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~----~~~P~v~GHE~~G~V~~vG~~   79 (202)
T d1e3ia1           7 IKCKAAIAWKTGSP---LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK----ALFPVVLGHECAGIVESVGPG   79 (202)
T ss_dssp             EEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC----CCSSBCCCCEEEEEEEEECTT
T ss_pred             EEEEEEEEccCCCC---CEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc----cccccccccccceEEeeecCC
Confidence            46899999998877   99999999999999999999999999999999988653    467899999999999999999


Q ss_pred             CCccCCCCEEEee
Q 040376           85 FNNFCPSRTYFDV   97 (100)
Q Consensus        85 v~~~~~Gd~V~~~   97 (100)
                      +++|++||||+..
T Consensus        80 V~~~~~GdrV~~~   92 (202)
T d1e3ia1          80 VTNFKPGDKVIPF   92 (202)
T ss_dssp             CCSCCTTCEEEEC
T ss_pred             ceeccCCCEEEEE
Confidence            9999999999764

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.93  E-value=9.7e-26  Score=140.70  Aligned_cols=86  Identities=19%  Similarity=0.150  Sum_probs=79.5

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .+|||+++.+++++   |++++++.|.|+++|||||+.++|||++|++.+.|.++    ..+|.++|||++|+|+++|++
T Consensus         7 ~~~KAav~~~~g~~---l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~----~~~P~i~GHE~~G~Vv~~G~~   79 (198)
T d1p0fa1           7 ITCKAAVAWEPHKP---LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP----SKFPVILGHEAVGVVESIGAG   79 (198)
T ss_dssp             EEEEEEEBSSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC----CCSSBCCCCCEEEEEEEECTT
T ss_pred             eEEEEEEEccCCCC---CEEEEEECCCCCCCEEEEEEEEEEEecccceeeeeccc----cccccccceeeeeeeeecCcc
Confidence            47999999988877   99999999999999999999999999999999998753    468999999999999999999


Q ss_pred             CCccCCCCEEEee
Q 040376           85 FNNFCPSRTYFDV   97 (100)
Q Consensus        85 v~~~~~Gd~V~~~   97 (100)
                      +.+|++||||...
T Consensus        80 v~~~~~GdrV~~~   92 (198)
T d1p0fa1          80 VTCVKPGDKVIPL   92 (198)
T ss_dssp             CCSCCTTCEEEEC
T ss_pred             cccCcCCCEEEEE
Confidence            9999999999764

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.93  E-value=2e-25  Score=139.10  Aligned_cols=86  Identities=20%  Similarity=0.180  Sum_probs=78.9

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      .+|||+++.+.+++   |++++++.|.|+++||||||.++|||++|++.++|.++    .++|.++|||++|+|+++|++
T Consensus         7 ~k~KAavl~~~~~~---l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~----~~~P~i~GHE~~G~Vv~vG~~   79 (198)
T d2jhfa1           7 IKCKAAVLWEEKKP---FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV----TPLPVIAGHEAAGIVESIGEG   79 (198)
T ss_dssp             EEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC----CCSSBCCCCSEEEEEEEECTT
T ss_pred             eEEEEEEEecCCCC---CEEEEEECCCCCCCEEEEEEEEEecccccceeecCCcc----cccceecccceeEEEEecCcc
Confidence            35899999988776   99999999999999999999999999999999998754    468999999999999999999


Q ss_pred             CCccCCCCEEEee
Q 040376           85 FNNFCPSRTYFDV   97 (100)
Q Consensus        85 v~~~~~Gd~V~~~   97 (100)
                      +++|++||||..-
T Consensus        80 v~~~~vGdrV~v~   92 (198)
T d2jhfa1          80 VTTVRPGDKVIPL   92 (198)
T ss_dssp             CCSCCTTCEEEEC
T ss_pred             ccCcCCCCEEEEe
Confidence            9999999999754

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.8e-25  Score=136.75  Aligned_cols=83  Identities=14%  Similarity=0.289  Sum_probs=77.2

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+.....+++   |++++++.|.|++||||||++++|||++|++.+.|.+.   ...+|.++|||++|+|+++|++|+
T Consensus         1 m~a~~~~~~~~p---l~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~---~~~~P~i~GhE~~G~V~~vG~~V~   74 (179)
T d1uufa1           1 IKAVGAYSAKQP---LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWA---GTVYPCVPGHEIVGRVVAVGDQVE   74 (179)
T ss_dssp             CEEEEBSSTTSC---CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTS---CCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             CeEEEEccCCCC---CEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeec---cccccccccccccccchhhccccc
Confidence            799998888777   99999999999999999999999999999999998765   457899999999999999999999


Q ss_pred             ccCCCCEEE
Q 040376           87 NFCPSRTYF   95 (100)
Q Consensus        87 ~~~~Gd~V~   95 (100)
                      +|++||||.
T Consensus        75 ~~~vGdrV~   83 (179)
T d1uufa1          75 KYAPGDLVG   83 (179)
T ss_dssp             SCCTTCEEE
T ss_pred             cCCCCCEEE
Confidence            999999995

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=2.5e-25  Score=138.75  Aligned_cols=86  Identities=24%  Similarity=0.181  Sum_probs=79.8

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++.+++++   |+++++|.|.|+++|||||++++|||++|++++.|.+.   ...+|.++|||++|+|+++|+++
T Consensus         6 ~~kAav~~~~g~~---l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~---~~~~p~v~GhE~~G~V~~vG~~V   79 (197)
T d2fzwa1           6 KCKAAVAWEAGKP---LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADP---EGCFPVILGHLGAGIVESVGEGV   79 (197)
T ss_dssp             EEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCT---TCCSSBCCCCEEEEEEEEECTTC
T ss_pred             EEEEEEEccCCCC---CEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcc---cccccccCCcceeeEEEeecCCc
Confidence            5899999998887   99999999999999999999999999999999999764   45789999999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      +.+++||||...
T Consensus        80 ~~~~~GdrV~v~   91 (197)
T d2fzwa1          80 TKLKAGDTVIPL   91 (197)
T ss_dssp             CSCCTTCEEEEC
T ss_pred             eecCCCCEEEEc
Confidence            999999999764

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=5.9e-25  Score=134.06  Aligned_cols=85  Identities=22%  Similarity=0.221  Sum_probs=77.7

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++++   |++++.+.|.|++||||||+++++||++|++.+++.+.  ....+|.++|||++|+|+++|++++
T Consensus         1 MkA~v~~~~g~p---l~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~--~~~~~p~v~GhE~~G~Vv~vG~~v~   75 (171)
T d1rjwa1           1 MKAAVVEQFKEP---LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWP--VKPKLPLIPGHEGVGIVEEVGPGVT   75 (171)
T ss_dssp             CEEEEBSSTTSC---CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSS--SCCCSSBCCCSCEEEEEEEECTTCC
T ss_pred             CeEEEEecCCCC---cEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccc--cccccccccCCEEEEEEEEeccccc
Confidence            899999998876   99999999999999999999999999999999887654  2557889999999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      .|++||||..
T Consensus        76 ~~~vGdrV~~   85 (171)
T d1rjwa1          76 HLKVGDRVGI   85 (171)
T ss_dssp             SCCTTCEEEE
T ss_pred             CceeeeEEee
Confidence            9999999964

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=5.4e-25  Score=135.94  Aligned_cols=89  Identities=15%  Similarity=0.106  Sum_probs=79.2

Q ss_pred             CCcccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEe
Q 040376            1 MAGKPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFC   80 (100)
Q Consensus         1 m~~~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~   80 (100)
                      |.++  |||+++++++++   +++++++.|.|+++|||||+.++|||++|+++++|.++   ..++|.++|||++|+|++
T Consensus         1 m~~k--~kA~v~~~~~~p---l~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~---~~~~P~vlGHE~~G~V~~   72 (184)
T d1vj0a1           1 MGLK--AHAMVLEKFNQP---LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDP---RVPLPIILGHEGAGRVVE   72 (184)
T ss_dssp             CCEE--EEEEEBCSTTSC---CEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCT---TCCSSBCCCCEEEEEEEE
T ss_pred             CCce--EEEEEEecCCCC---cEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCC---ccccccccceeeeeeeeE
Confidence            5554  899999998877   89999999999999999999999999999999998765   356899999999999999


Q ss_pred             ecCCCC-----ccCCCCEEEee
Q 040376           81 ELESFN-----NFCPSRTYFDV   97 (100)
Q Consensus        81 vG~~v~-----~~~~Gd~V~~~   97 (100)
                      +|+++.     .+++||+|+..
T Consensus        73 vG~~v~~~~~~~~~~Gd~V~~~   94 (184)
T d1vj0a1          73 VNGEKRDLNGELLKPGDLIVWN   94 (184)
T ss_dssp             ESSCCBCTTSCBCCTTCEEEEC
T ss_pred             EeccccccccccccceeeeEec
Confidence            999885     46899999764

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.92  E-value=5.3e-25  Score=135.26  Aligned_cols=83  Identities=12%  Similarity=0.049  Sum_probs=74.1

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++.+++    ++++++.+.|.|+++||+||+.++|||++|++.+.+...   ...+|.++|||++|+|+++|++++
T Consensus         1 MKa~v~~~~~----~l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~---~~~~P~i~GhE~~G~V~~vG~~v~   73 (177)
T d1jqba1           1 MKGFAMLGIN----KLGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGAL---GDRKNMILGHEAVGEVVEVGSEVK   73 (177)
T ss_dssp             CEEEEEEETT----EEEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTT---CCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CeEEEEEeCC----CeEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCC---CCCCCccCcceeeEEeeecccccc
Confidence            8999999853    489999999999999999999999999999987765433   356799999999999999999999


Q ss_pred             ccCCCCEEEe
Q 040376           87 NFCPSRTYFD   96 (100)
Q Consensus        87 ~~~~Gd~V~~   96 (100)
                      +|++||||..
T Consensus        74 ~~~vGdrV~v   83 (177)
T d1jqba1          74 DFKPGDRVIV   83 (177)
T ss_dssp             SCCTTCEEEE
T ss_pred             eecCCCcEEE
Confidence            9999999974

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.91  E-value=2.2e-24  Score=131.73  Aligned_cols=87  Identities=15%  Similarity=0.214  Sum_probs=77.8

Q ss_pred             eeEEEcccCCCCcceEEeeccCCCC-CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            8 HAVQYNSYGGGAADLKHVELPVPTP-SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         8 ka~~~~~~~~~~~~~~~~~~~~p~~-~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      ||+++++++++   |++++.+.|++ ++||||||+.+++||++|++.+.|.+.......+|.++|||++|+|+++|++++
T Consensus         1 kA~~~~~~g~p---l~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~   77 (171)
T d1h2ba1           1 KAARLHEYNKP---LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVE   77 (171)
T ss_dssp             CEEEESSTTSC---CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CEEEEEeCCCC---CEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCC
Confidence            78999999987   99999999985 689999999999999999999998765333457899999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||+..
T Consensus        78 ~~~~GdrV~~~   88 (171)
T d1h2ba1          78 GLEKGDPVILH   88 (171)
T ss_dssp             SCCTTCEEEEC
T ss_pred             cCCCCCEEEEc
Confidence            99999999864

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.91  E-value=5.7e-24  Score=132.63  Aligned_cols=86  Identities=17%  Similarity=0.123  Sum_probs=78.2

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      ++||+++.+.+.+   +++++++.|.|+++||+||+.++|||++|++.+.+...   ...+|.++|||++|+|+++|+++
T Consensus         8 ~~kAav~~~~~~p---l~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~---~~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           8 KCKAAVAWEANKP---LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKH---KDGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             EEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCC---TTSCSEECCCCEEEEEEEECTTC
T ss_pred             EEEEEEEecCCCC---cEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhccc---ccccccccccccceEEEEEcCCC
Confidence            4679999988877   99999999999999999999999999999999998654   45789999999999999999999


Q ss_pred             CccCCCCEEEee
Q 040376           86 NNFCPSRTYFDV   97 (100)
Q Consensus        86 ~~~~~Gd~V~~~   97 (100)
                      ++|++||||...
T Consensus        82 ~~~~~GdrV~~~   93 (199)
T d1cdoa1          82 TEFQPGEKVIPL   93 (199)
T ss_dssp             CSCCTTCEEEEC
T ss_pred             ceecCCCEEEEe
Confidence            999999999764

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-24  Score=131.81  Aligned_cols=90  Identities=19%  Similarity=0.151  Sum_probs=77.6

Q ss_pred             ccceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            4 KPLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         4 ~~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      +..++|++++.+    +.|++++++.|.|+++||+||+++++||++|++.+.+.........+|.++|||++|+|+++|+
T Consensus         5 ~p~~~a~V~~gp----~~l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   80 (185)
T d1pl8a1           5 KPNNLSLVVHGP----GDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGS   80 (185)
T ss_dssp             CCCCEEEEEEET----TEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECT
T ss_pred             CCCCEEEEEeCC----CeEEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEecc
Confidence            346789999874    4599999999999999999999999999999999886543223456789999999999999999


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      ++++|++||||+..
T Consensus        81 ~v~~~~~GdrV~~~   94 (185)
T d1pl8a1          81 SVKHLKPGDRVAIE   94 (185)
T ss_dssp             TCCSCCTTCEEEEC
T ss_pred             ceeeecccccceec
Confidence            99999999999753

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.90  E-value=9.5e-24  Score=129.49  Aligned_cols=86  Identities=19%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |+|+ +.+.    .+|++++.+.|.|+++|||||+++++||++|++.+.+........+.|.++|||++|+|+++|++++
T Consensus         3 maAV-l~g~----~~l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~   77 (178)
T d1e3ja1           3 LSAV-LYKQ----NDLRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   77 (178)
T ss_dssp             EEEE-EEET----TEEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             eEEE-EEcC----CcEEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccC
Confidence            5554 4442    4599999999999999999999999999999998887654334556789999999999999999999


Q ss_pred             ccCCCCEEEee
Q 040376           87 NFCPSRTYFDV   97 (100)
Q Consensus        87 ~~~~Gd~V~~~   97 (100)
                      +|++||||...
T Consensus        78 ~~~~GdrV~~~   88 (178)
T d1e3ja1          78 HLKKGDRVAVE   88 (178)
T ss_dssp             SCCTTCEEEEC
T ss_pred             CCCCCCEEEEC
Confidence            99999999753

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=1.4e-22  Score=126.55  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=72.5

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCC-------CCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEE
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTP-------SKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIF   79 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~-------~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~   79 (100)
                      +||+++++++    .+++++++.|.+       .++||+||+.+++||++|++.+.|.++    ..+|.++|||++|+|+
T Consensus         2 ~kA~v~~~~~----~le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~----~~~P~v~GHE~~G~Vv   73 (201)
T d1kola1           2 NRGVVYLGSG----KVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT----AQVGLVLGHEITGEVI   73 (201)
T ss_dssp             EEEEEEEETT----EEEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC----CCTTCBCCCCEEEEEE
T ss_pred             cEEEEEeCCC----ceEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc----cccceeccceeeeeee
Confidence            6899999864    389999888754       569999999999999999999998753    4689999999999999


Q ss_pred             eecCCCCccCCCCEEEe
Q 040376           80 CELESFNNFCPSRTYFD   96 (100)
Q Consensus        80 ~vG~~v~~~~~Gd~V~~   96 (100)
                      ++|++|++|++||||..
T Consensus        74 ~vG~~V~~~~vGdrV~v   90 (201)
T d1kola1          74 EKGRDVENLQIGDLVSV   90 (201)
T ss_dssp             EECTTCCSCCTTCEEEC
T ss_pred             ccccccccccccceeEE
Confidence            99999999999999964

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.88  E-value=2e-22  Score=120.89  Aligned_cols=88  Identities=13%  Similarity=0.170  Sum_probs=77.3

Q ss_pred             ceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCC
Q 040376            6 LMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESF   85 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   85 (100)
                      +|||+++++++++ ..+++++.+.|+|++||||||++++|||++|++.+.|.++  .....|.++|+|++|+|++  ..+
T Consensus         3 ~~KA~v~~~~~~~-~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~--~~~~~p~v~g~e~~G~v~~--~~~   77 (152)
T d1xa0a1           3 AFQAFVVNKTETE-FTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGK--IVKTYPFVPGIDLAGVVVS--SQH   77 (152)
T ss_dssp             EEEEEEEEEETTE-EEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGS--SCCSSSBCCCSEEEEEEEE--CCS
T ss_pred             ceEEEEEEecCCc-eEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhccc--ccccccceeeeeeeeeeec--cCC
Confidence            4999999998886 6677889999999999999999999999999999888765  2456789999999999999  567


Q ss_pred             CccCCCCEEEeec
Q 040376           86 NNFCPSRTYFDVY   98 (100)
Q Consensus        86 ~~~~~Gd~V~~~~   98 (100)
                      +.|++||+|++..
T Consensus        78 ~~~~~g~~v~~~~   90 (152)
T d1xa0a1          78 PRFREGDEVIATG   90 (152)
T ss_dssp             SSCCTTCEEEEES
T ss_pred             CccccCCEEEEec
Confidence            7899999998763

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.8e-22  Score=118.24  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=75.0

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||+++++++++ ..+++++.+.|.|++|||+|||+|+|||+.|++...|.+..  ...+|.++|+|++|+|+++|.  .
T Consensus         1 MkA~v~~~~~~~-~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~--~~~~p~v~G~e~~G~V~~~~~--~   75 (146)
T d1o89a1           1 LQALLLEQQDGK-TLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKI--IRNFPMIPGIDFAGTVRTSED--P   75 (146)
T ss_dssp             CEEEEEECC----CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSC--CCSSSBCCCSEEEEEEEEECS--T
T ss_pred             CeEEEEEcCCCc-eEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeeccc--ccccceeccccccccceeecc--C
Confidence            899999999887 78899999999999999999999999999999999997652  456789999999999999765  4


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                      .|++||+|+...
T Consensus        76 ~~~~g~~v~~~~   87 (146)
T d1o89a1          76 RFHAGQEVLLTG   87 (146)
T ss_dssp             TCCTTCEEEEEC
T ss_pred             CccceeeEEeec
Confidence            799999998653

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.87  E-value=1.1e-21  Score=115.12  Aligned_cols=76  Identities=33%  Similarity=0.514  Sum_probs=68.5

Q ss_pred             eeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCCCC
Q 040376            7 MHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELESFN   86 (100)
Q Consensus         7 ~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   86 (100)
                      |||++++++|++   +++++.+.|.|+++||+||++++|||+.|++.+.|.+..  ...+|.++|+|++|+|        
T Consensus         1 MkA~~~~~~G~~---l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~--~~~~P~v~G~E~~G~V--------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGP---LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLT--RLHPPFIPGMEVVGVV--------   67 (131)
T ss_dssp             CEEEEECSTTSC---EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS--CCCSSBCCCCEEEEEE--------
T ss_pred             CcEEEEccCCCC---CEEEEccCCCCCCCEEEEEEEEEeccccccccccccccc--cccceeEeeeeeEEee--------
Confidence            899999999876   899999999999999999999999999999999998752  4578999999999999        


Q ss_pred             ccCCCCEEEeec
Q 040376           87 NFCPSRTYFDVY   98 (100)
Q Consensus        87 ~~~~Gd~V~~~~   98 (100)
                         +||+|+++.
T Consensus        68 ---vGd~V~~~~   76 (131)
T d1iz0a1          68 ---EGRRYAALV   76 (131)
T ss_dssp             ---TTEEEEEEC
T ss_pred             ---ccceEEEEe
Confidence               399998764

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.3e-20  Score=113.88  Aligned_cols=89  Identities=19%  Similarity=0.217  Sum_probs=79.0

Q ss_pred             cceeeEEEcccCCCCcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecCC
Q 040376            5 PLMHAVQYNSYGGGAADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELES   84 (100)
Q Consensus         5 ~~~ka~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   84 (100)
                      ++|||+++++.+.. ..+++++++.|++++|||||||+|+|||++|++.+.|.++  .....|.++|+|++|+|++  +.
T Consensus         2 ~~~ka~~~~~~g~~-~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~--~~~~~~~~~g~e~~G~v~~--~~   76 (162)
T d1tt7a1           2 TLFQALQAEKNADD-VSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGN--IVREYPLILGIDAAGTVVS--SN   76 (162)
T ss_dssp             CEEEEEEECCGGGS-CCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCT--TCSSCSEECCSEEEEEEEE--CS
T ss_pred             CcEEEEEEEecCCC-eEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeeccc--ccccceeeeeeeccccccc--cc
Confidence            47999999998886 8899999999999999999999999999999999988765  2446778999999999999  56


Q ss_pred             CCccCCCCEEEeec
Q 040376           85 FNNFCPSRTYFDVY   98 (100)
Q Consensus        85 v~~~~~Gd~V~~~~   98 (100)
                      ++.|++||+|++..
T Consensus        77 ~~~~~~g~~v~~~~   90 (162)
T d1tt7a1          77 DPRFAEGDEVIATS   90 (162)
T ss_dssp             STTCCTTCEEEEES
T ss_pred             ccccccceeeEeee
Confidence            78899999998754

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.81  E-value=2.2e-19  Score=109.10  Aligned_cols=92  Identities=16%  Similarity=0.071  Sum_probs=76.3

Q ss_pred             ceeeEEEcccCCCCcceEE--eeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCC-------CCCCCccccccceE
Q 040376            6 LMHAVQYNSYGGGAADLKH--VELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFL-------PRKFPCIPGILVLP   76 (100)
Q Consensus         6 ~~ka~~~~~~~~~~~~~~~--~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~-------~~~~p~~~G~e~~G   76 (100)
                      +|||++++++|.|.+.+++  .+.+.|.|+++|||||+++++||++|+++++|.++...       ....|.++|+|++|
T Consensus         3 t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~g   82 (175)
T d1gu7a1           3 TAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGLF   82 (175)
T ss_dssp             EEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCEE
T ss_pred             eeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccccc
Confidence            5899999999886344554  56777888999999999999999999999998754211       12467889999999


Q ss_pred             EEEeecCCCCccCCCCEEEee
Q 040376           77 LIFCELESFNNFCPSRTYFDV   97 (100)
Q Consensus        77 ~V~~vG~~v~~~~~Gd~V~~~   97 (100)
                      +|++.|.++..++.||+|+..
T Consensus        83 ~V~~~~~~~~~~~~g~~v~~~  103 (175)
T d1gu7a1          83 EVIKVGSNVSSLEAGDWVIPS  103 (175)
T ss_dssp             EEEEECTTCCSCCTTCEEEES
T ss_pred             ccccccccccccccccceecc
Confidence            999999999999999999754

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.58  E-value=1.5e-14  Score=85.83  Aligned_cols=82  Identities=13%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             eeeEEEccc--CCC-CcceEEeeccCCCCCCCcEEEEEeEeeeChhhHHHHhCCCCCCCCCCCCccccccceEEEEeecC
Q 040376            7 MHAVQYNSY--GGG-AADLKHVELPVPTPSKDEVLLKLEATALNPVDWKIQKGQLRPFLPRKFPCIPGILVLPLIFCELE   83 (100)
Q Consensus         7 ~ka~~~~~~--~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~l~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~   83 (100)
                      .|+|++.+.  |.| .++|++++.+.|+|++||||||++|.+++|..+....       ..+.+.++..+.+|+|++  +
T Consensus         4 ~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~-------~~~~g~~~~g~~vg~Vv~--S   74 (147)
T d1v3va1           4 AKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK-------RLKEGAVMMGQQVARVVE--S   74 (147)
T ss_dssp             EEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGG-------GSCTTSBCCCCEEEEEEE--E
T ss_pred             cEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccc-------ccccCCccccceEEEEEE--e
Confidence            588988775  444 3679999999999999999999999999997654332       223445667789999998  7


Q ss_pred             CCCccCCCCEEEee
Q 040376           84 SFNNFCPSRTYFDV   97 (100)
Q Consensus        84 ~v~~~~~Gd~V~~~   97 (100)
                      ++++|++||+|++.
T Consensus        75 ~~~~f~~GD~V~g~   88 (147)
T d1v3va1          75 KNSAFPAGSIVLAQ   88 (147)
T ss_dssp             SCTTSCTTCEEEEC
T ss_pred             CCCcccCCCEEEEc
Confidence            78899999999886

>d1p3ha_ b.35.1.1 (A:) Chaperonin-10 (GroES) {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.99  E-value=0.055  Score=28.64  Aligned_cols=23  Identities=4%  Similarity=-0.210  Sum_probs=18.1

Q ss_pred             ceEEEEeecCCCC----------ccCCCCEEEe
Q 040376           74 VLPLIFCELESFN----------NFCPSRTYFD   96 (100)
Q Consensus        74 ~~G~V~~vG~~v~----------~~~~Gd~V~~   96 (100)
                      ..|+|+++|++..          .+++||+|+.
T Consensus        38 ~~G~VvavG~g~~~~~~~~~~~~~vk~GD~Vl~   70 (99)
T d1p3ha_          38 QEGTVVAVGPGRWDEDGEKRIPLDVAEGDTVIY   70 (99)
T ss_dssp             EEEEEEEECCCEECSSSSCEECCSCCTTCEEEE
T ss_pred             eEEEEEEECCceEcCCCCEecCCeeecCCEEEE
Confidence            4699999998642          3789999964

>d1aono_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Escherichia coli [TaxId: 562]

Probab=89.27  E-value=0.2  Score=26.17  Aligned_cols=23  Identities=0%  Similarity=-0.278  Sum_probs=18.1

Q ss_pred             ceEEEEeecCCCC---------ccCCCCEEEe
Q 040376           74 VLPLIFCELESFN---------NFCPSRTYFD   96 (100)
Q Consensus        74 ~~G~V~~vG~~v~---------~~~~Gd~V~~   96 (100)
                      ..|+|+++|++..         ..++||+|+.
T Consensus        36 ~~g~VvavG~g~~~~~g~~~~~~vk~GD~Vl~   67 (97)
T d1aono_          36 TRGEVLAVGNGRILENGEVKPLDVKVGDIVIF   67 (97)
T ss_dssp             CEEEEEEECSBCCTTSSCCCBCSCCTTCEEEE
T ss_pred             eeEEEEEEeeeEEccCCcCccccCCCCCEEEE
Confidence            5799999997642         3789999964

>d1g31a_ b.35.1.1 (A:) GP31 co-chaperonin {Bacteriophage T4 [TaxId: 10665]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: GP31 co-chaperonin
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.69  E-value=0.97  Score=23.85  Aligned_cols=23  Identities=4%  Similarity=-0.230  Sum_probs=19.4

Q ss_pred             cceEEEEeecCCCCc--cCCCCEEE
Q 040376           73 LVLPLIFCELESFNN--FCPSRTYF   95 (100)
Q Consensus        73 e~~G~V~~vG~~v~~--~~~Gd~V~   95 (100)
                      -..|.|+.+|++|+.  .++||.|.
T Consensus        42 Pl~~~viSVG~dVpe~~~kvG~~vl   66 (107)
T d1g31a_          42 PELCVVHSVGPDVPEGFCEVGDLTS   66 (107)
T ss_dssp             EEEEEEEEECTTSCTTSCCTTCEEE
T ss_pred             ceeEEEEEeCCCCCHHHhccccEEE
Confidence            368999999999984  57999885

>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: GroES
domain: Chaperonin-10 (GroES)
species: Thermus thermophilus [TaxId: 274]

Probab=81.61  E-value=0.27  Score=25.59  Aligned_cols=23  Identities=0%  Similarity=-0.321  Sum_probs=17.0

Q ss_pred             ceEEEEeecCCCC---------ccCCCCEEEe
Q 040376           74 VLPLIFCELESFN---------NFCPSRTYFD   96 (100)
Q Consensus        74 ~~G~V~~vG~~v~---------~~~~Gd~V~~   96 (100)
                      ..|+|+++|++..         ..++||+|+.
T Consensus        37 ~~g~VvavG~g~~~~~g~~~p~~vkvGD~Vl~   68 (96)
T d1we3o_          37 QKGKVIAVGTGRVLENGQRVPLEVKEGDIVVF   68 (96)
T ss_dssp             SEEEESCCCCCEECTTSCEECCSCCTTCEEEE
T ss_pred             eEEEEeeecceEecCCCCEEEeeEEeCCEEEE
Confidence            3689999887532         3889999963