Citrus Sinensis ID: 040435
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1991 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WQD2 | 680 | Probable galacturonosyltr | yes | no | 0.310 | 0.910 | 0.699 | 0.0 | |
| Q9SII7 | 736 | Pentatricopeptide repeat- | no | no | 0.353 | 0.956 | 0.527 | 0.0 | |
| Q9LE59 | 673 | Polygalacturonate 4-alpha | no | no | 0.290 | 0.860 | 0.579 | 0.0 | |
| Q93ZX7 | 616 | Probable galacturonosyltr | no | no | 0.247 | 0.798 | 0.542 | 1e-165 | |
| Q9ZPZ1 | 528 | Putative galacturonosyltr | no | no | 0.242 | 0.914 | 0.483 | 1e-140 | |
| Q949Q1 | 537 | Probable galacturonosyltr | no | no | 0.225 | 0.834 | 0.497 | 1e-127 | |
| Q9LSG3 | 559 | Galacturonosyltransferase | no | no | 0.209 | 0.745 | 0.502 | 1e-124 | |
| Q9SKT6 | 536 | Probable galacturonosyltr | no | no | 0.221 | 0.822 | 0.491 | 1e-121 | |
| Q9FWA4 | 561 | Probable galacturonosyltr | no | no | 0.192 | 0.682 | 0.555 | 1e-118 | |
| Q8RXE1 | 610 | Probable galacturonosyltr | no | no | 0.212 | 0.693 | 0.431 | 1e-110 |
| >sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 | Back alignment and function desciption |
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Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/638 (69%), Positives = 509/638 (79%), Gaps = 19/638 (2%)
Query: 42 QRELKAHRPLYDK------GDGAARFNNDPDIKDIDIIATYSDVSGAVRISRVKMSHLSA 95
RELKA+RPL D AA + DPD+KD++I+ATYSD G +R+ RVKM LS
Sbjct: 33 HRELKAYRPLQDNNLQEVYASSAAAVHYDPDLKDVNIVATYSDHYGNIRLGRVKMGDLSP 92
Query: 96 SWILENPADGDNGLPNSSQTL--GDSFQAGMNLEENVEYPMGDHQSEEVGFFNRQKPPL- 152
SW+LENPA + SQ + DSFQ +E+N + + E F P +
Sbjct: 93 SWVLENPAYQVSRKTKGSQLVIPRDSFQNDTGMEDNASHSTTNQTDESENQF----PNVD 148
Query: 153 --SPVKLKRQMLRQKRMELRTAELIRQDNENDNIMQETAFEQSKRLEPRVTGKYSIWRRD 210
SP KLKRQ+LRQ+R RT ELIRQ+ E D MQE A ++S E V GKYSIWRRD
Sbjct: 149 FASPAKLKRQILRQERRGQRTLELIRQEKETDEQMQEAAIQKSMSFENSVIGKYSIWRRD 208
Query: 211 FESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELP 270
+ESPN D+ LKLMRDQII+AKAYA++AKSKN ++LY LM+ C E++R IG A SDA+LP
Sbjct: 209 YESPNADAILKLMRDQIIMAKAYANIAKSKNVTNLYVFLMQQCGENKRVIGKATSDADLP 268
Query: 271 SSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIV 330
SSAL+QA+AMGH LS+AKD+LYDC + +KFRA++QSTE V LK+K +FLIQLAAK
Sbjct: 269 SSALDQAKAMGHALSLAKDELYDCHELAKKFRAILQSTERKVDGLKKKGTFLIQLAAKTF 328
Query: 331 PRPLHCLPLQLAADYYLQGHHK----KEEQINEKFEDPSLYHYAIFSDNVLATSVVVNST 386
P+PLHCL LQLAADY++ G ++ KE+ +K EDPSLYHYAIFSDNVLATSVVVNST
Sbjct: 329 PKPLHCLSLQLAADYFILGFNEEDAVKEDVSQKKLEDPSLYHYAIFSDNVLATSVVVNST 388
Query: 387 VAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQL 446
V +AKEP++HVFHIVTDKLNF AMKMWF +NAP ATIQ+ENI+ FKWLNSSYCSVLRQL
Sbjct: 389 VLNAKEPQRHVFHIVTDKLNFGAMKMWFRINAPADATIQVENINDFKWLNSSYCSVLRQL 448
Query: 447 ESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDI 506
ESARLKEYYFKANHPSS+SAG+DNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDI
Sbjct: 449 ESARLKEYYFKANHPSSISAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDI 508
Query: 507 VVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNM 566
VVQKDL PLW +D+ G VNGAVETCKESFHRFDKYLNFSNP ISENF ACGWAFGMNM
Sbjct: 509 VVQKDLAPLWEIDMQGKVNGAVETCKESFHRFDKYLNFSNPKISENFDAGACGWAFGMNM 568
Query: 567 FDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDP 626
FDLKEWRKRNITGIYHYWQD NEDRTLWKLG+LPPGLITFYNLTY +DRSWHVLGLGYDP
Sbjct: 569 FDLKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPGLITFYNLTYAMDRSWHVLGLGYDP 628
Query: 627 ALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
ALN T I+N AVVHYNGN KPWL LA +KYKPYWSKYV
Sbjct: 629 ALNQTAIENAAVVHYNGNYKPWLGLAFAKYKPYWSKYV 666
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May be involved in pectin and/or xylans biosynthesis in cell walls. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: - |
| >sp|Q9SII7|PP159_ARATH Pentatricopeptide repeat-containing protein At2g17210 OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2 | Back alignment and function description |
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Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/717 (52%), Positives = 513/717 (71%), Gaps = 13/717 (1%)
Query: 670 RLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYI-HGRLV 728
+L+ + ++K+ S +GKW+E+ S Y E ++ V NDP V+P+V KAC+ LS++ GR +
Sbjct: 10 KLQALSSKIKQASVSGKWREVVSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGRCI 69
Query: 729 HACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTL 788
A L+K+G+ESF S+GN++ DFYMK S + FD RDSVSWN+++ G LD+G
Sbjct: 70 QASLLKRGFESFVSVGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFE 129
Query: 789 GEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSV 848
EGLWWF K RV GFEPN S LVLVI ACR L +++G ++HGY+IRSG + SVQNS+
Sbjct: 130 EEGLWWFSKLRVWGFEPNTSTLVLVIHACRSL--WFDGEKIHGYVIRSGFCGISSVQNSI 187
Query: 849 LSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDG 908
L MY D+D ARKLFDEM ERDVISWSV+I YVQS E GL+LF++MV K EPD
Sbjct: 188 LCMYADSDSLSARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDC 247
Query: 909 QSLVSVLKACTNLRDLTMGRMVHGLVIYRGLG-CDLFVGNSLIDMYAKCKDTDSAFKVFS 967
++ SVLKACT + D+ +GR VHG I RG D+FV NSLIDMY+K D DSAF+VF
Sbjct: 248 VTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFD 307
Query: 968 EMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPME 1027
E +N VSWNS L+G V N++Y EAL + + M + EVDE+T+V++L++CK F P+
Sbjct: 308 ETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLP 367
Query: 1028 CKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTL 1087
CKS+H VI+RR +ESNE+ L+SLID Y+ C LV+ A + + + DVV STMI+G
Sbjct: 368 CKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAH 427
Query: 1088 CGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLA-EEVA 1146
GR EAI++F M ++ PNAIT+I+LL ACSV+ +L +SKWAHGIAIRR LA +++
Sbjct: 428 AGRSDEAISIFCHM---RDTPNAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDIS 484
Query: 1147 VGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG 1206
VGT++VD YAKCGAIE +R+ FDQI+ KNI+SW+ +++AY +NGL +ALAL EMK G
Sbjct: 485 VGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKG 544
Query: 1207 LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV-QDHGVEPALEHYSCMVDMLARAGELDI 1265
PNAVT L+ LSAC+HGGLV++GL F SMV +DH +P+L+HYSC+VDML+RAGE+D
Sbjct: 545 YTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDH--KPSLQHYSCIVDMLSRAGEIDT 602
Query: 1266 AIDLINQMPDNLKATASAWGALLSACRS-YGNTELGAGATSRILELEAQNSAGYLLASSM 1324
A++LI +P+++KA ASAWGA+LS CR+ + + + + +LELE S+GYLLASS
Sbjct: 603 AVELIKNLPEDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASST 662
Query: 1325 YAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEK-AQSHPRGSEVI 1380
+AA W + + R L KER V+VVAG S+V N A +F+AG+K +QS ++V+
Sbjct: 663 FAAEKSWEDVAMMRRLVKERKVRVVAGYSMVREGNLAKRFLAGDKLSQSDSELNDVV 719
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/619 (57%), Positives = 453/619 (73%), Gaps = 40/619 (6%)
Query: 70 IDIIATYSDVSGAVRISRVKMSHLSASWI----------LENPADGDNGLPNSSQTLGDS 119
+D+IAT + G + + K ++LSASW ENPA D
Sbjct: 81 LDVIATSTADLGPLSLDSFKKNNLSASWRGTGVDPSFRHSENPATPD------------- 127
Query: 120 FQAGMNLEENVEYPMGD--HQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQ 177
NL E + D HQ E +P K+ R+ LR+KR E+R EL++
Sbjct: 128 -VKSNNLNEKRDSISKDSIHQKVE-----------TPTKIHRRQLREKRREMRANELVQH 175
Query: 178 DNENDNIMQETAFEQSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKAYAHVA 237
+++ ++ A E+SK ++ V GKYSIWRR+ E+ N+DS ++LMRDQ+I+A+ Y+ +A
Sbjct: 176 NDDTILKLENAAIERSKSVDSAVLGKYSIWRRENENDNSDSNIRLMRDQVIMARVYSGIA 235
Query: 238 KSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTV 297
K KN++ L L K+SQR +G+A SDA+LP SA + +AMG VL+ AK QLYDC V
Sbjct: 236 KLKNKNDLLQELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLYDCKLV 295
Query: 298 QRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQI 357
K RAM+Q+ + V +LK++S+FL QLAAK +P P+HCL ++L DYYL K++
Sbjct: 296 TGKLRAMLQTADEQVRSLKKQSTFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEKRKFPR 355
Query: 358 NEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVN 417
+E E+P+LYHYA+FSDNVLA SVVVNST+ +AK+P KHVFH+VTDKLNF AM MWFL+N
Sbjct: 356 SENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDPSKHVFHLVTDKLNFGAMNMWFLLN 415
Query: 418 APPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPK 477
P KATI +EN+D FKWLNSSYC VLRQLESA ++EYYFKA+HP+S GS NLKYRNPK
Sbjct: 416 PPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMREYYFKADHPTS---GSSNLKYRNPK 472
Query: 478 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHR 537
YLSMLNHLRFYLPEVYPKL KILFLDDDI+VQKDLTPLW V+L+G VNGAVETC ESFHR
Sbjct: 473 YLSMLNHLRFYLPEVYPKLNKILFLDDDIIVQKDLTPLWEVNLNGKVNGAVETCGESFHR 532
Query: 538 FDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLG 597
FDKYLNFSNP I+ NF+PNACGWA+GMNMFDLKEW+KR+ITGIYH WQ+ NE+RTLWKLG
Sbjct: 533 FDKYLNFSNPHIARNFNPNACGWAYGMNMFDLKEWKKRDITGIYHKWQNMNENRTLWKLG 592
Query: 598 TLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYK 657
TLPPGLITFY LT+PL+++WHVLGLGY+P+++ I+N AVVHYNGN KPWL+LA+SKY+
Sbjct: 593 TLPPGLITFYGLTHPLNKAWHVLGLGYNPSIDKKDIENAAVVHYNGNMKPWLELAMSKYR 652
Query: 658 PYWSKYVILWSLRLRTWNL 676
PYW+KY+ LR NL
Sbjct: 653 PYWTKYIKFDHPYLRRCNL 671
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Involved in pectin biosynthesis. Catalyzes the transfer of galacturonic acid from uridine 5'-diphosphogalacturonic acid onto the pectic polysaccharide homogalacturonan. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 4 EC: 3 |
| >sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 583 bits (1503), Expect = e-165, Method: Compositional matrix adjust.
Identities = 274/505 (54%), Positives = 363/505 (71%), Gaps = 13/505 (2%)
Query: 175 IRQDNENDNIMQETAFEQSKRLEPRVTGKYSIWRRDFESPNT---DSTLKLMRDQIILAK 231
I ++N + + Q+T+ + ++ EP G ++ N D+ ++ ++DQ+I AK
Sbjct: 120 INRENMHVQLTQQTSEKVDEQPEPNAFGAKK------DTGNVLMPDAQVRHLKDQLIRAK 173
Query: 232 AYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQL 291
Y + +K + L KE QRA+ DA+ D++LP +A+ + +AM L+ K
Sbjct: 174 VYLSLPSAKANAHFVRELRLRIKEVQRALADASKDSDLPKTAIEKLKAMEQTLAKGKQIQ 233
Query: 292 YDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHH 351
DC TV +K RAM+ S + + K+++ FL QL AK +P+ LHCLPL+L DYY
Sbjct: 234 DDCSTVVKKLRAMLHSADEQLRVHKKQTMFLTQLTAKTIPKGLHCLPLRLTTDYYALNSS 293
Query: 352 KKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMK 411
+++ EK ED LYHYA+FSDNVLATSVVVNST+ +AK P KHVFHIVTD+LN+ AM+
Sbjct: 294 EQQFPNQEKLEDTQLYHYALFSDNVLATSVVVNSTITNAKHPLKHVFHIVTDRLNYAAMR 353
Query: 412 MWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNL 471
MWFL N P KATIQ++N++ F WLNSSY VL+QL S + +YYF+A+H +S NL
Sbjct: 354 MWFLDNPPGKATIQVQNVEEFTWLNSSYSPVLKQLSSRSMIDYYFRAHHTNS----DTNL 409
Query: 472 KYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETC 531
K+RNPKYLS+LNHLRFYLPE++PKL K+LFLDDDIVVQKDL+ LWSVDL G VNGAVETC
Sbjct: 410 KFRNPKYLSILNHLRFYLPEIFPKLSKVLFLDDDIVVQKDLSGLWSVDLKGNVNGAVETC 469
Query: 532 KESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDR 591
ESFHRFD+YLNFSNPLIS+NF P ACGWA+GMN+FDL EW+++NIT +YH WQD N+DR
Sbjct: 470 GESFHRFDRYLNFSNPLISKNFDPRACGWAYGMNVFDLDEWKRQNITEVYHRWQDLNQDR 529
Query: 592 TLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDL 651
LWKLGTLPPGLITF+ TYPLDR WH+LGLGY+P++N I+ AV+HYNGN KPWL++
Sbjct: 530 ELWKLGTLPPGLITFWRRTYPLDRKWHILGLGYNPSVNQRDIERAAVIHYNGNLKPWLEI 589
Query: 652 AVSKYKPYWSKYVILWSLRLRTWNL 676
+ +Y+ +WSK+V + LR N+
Sbjct: 590 GIPRYRGFWSKHVDYEHVYLRECNI 614
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May be involved in pectin and/or xylans biosynthesis in cell walls. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZPZ1|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1 | Back alignment and function description |
|---|
Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust.
Identities = 248/513 (48%), Positives = 344/513 (67%), Gaps = 30/513 (5%)
Query: 153 SPVKLKRQMLRQKRMELRTAELIRQDNENDNIMQETAFEQSKRLEPRVTGKYSIWRRDFE 212
+P L + LRQ++ R EL+ D+ ++ A +S+ ++ G Y+IW+ ++
Sbjct: 31 TPEMLHERSLRQEKRLERANELMNDDSLQK--LETAAMARSRSVDSAPLGNYTIWKNEYR 88
Query: 213 SPNT-DSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPS 271
+ + L+LM+DQII+A+ Y+ +AK N +L+ + + + A + ++D +
Sbjct: 89 RGKSFEDMLRLMQDQIIMARVYSGLAKFTNNLALHQEI--ETQLMKLAWEEESTDIDQEQ 146
Query: 272 SALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVP 331
L+ + MG +L+ A +QLY+C V K RAM+Q+ E + + +FL QLA+K +P
Sbjct: 147 RVLDSIRDMGQILARAHEQLYECKLVTNKLRAMLQTVEDELENEQTYITFLTQLASKALP 206
Query: 332 RPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAK 391
+HCL ++L +Y+L + E E+P LYHYA+FSDNVLA SVVVNSTV +A+
Sbjct: 207 DAIHCLTMRLNLEYHLLPLPMRNFPRRENLENPKLYHYALFSDNVLAASVVVNSTVMNAQ 266
Query: 392 EPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARL 451
+P +HVFH+VTDKLNF AM MWFL+N P +ATI ++ + F WLNSSY VL QLESA +
Sbjct: 267 DPSRHVFHLVTDKLNFGAMSMWFLLNPPGEATIHVQRFEDFTWLNSSYSPVLSQLESAAM 326
Query: 452 KEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKD 511
K++YFK S+ +GS+NLKYR PKY+SMLNHLRFY+P ++PKLEKILF+DDD+VVQKD
Sbjct: 327 KKFYFKTARSESVESGSENLKYRYPKYMSMLNHLRFYIPRIFPKLEKILFVDDDVVVQKD 386
Query: 512 LTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKE 571
LTPLWS+DL G VN ENF P CGWA+GMN+FDLKE
Sbjct: 387 LTPLWSIDLKGKVN-------------------------ENFDPKFCGWAYGMNIFDLKE 421
Query: 572 WRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLT 631
W+K NIT YH+WQ+ NE+RTLWKLGTLPPGLITFYNLT PL R WH+LGLGYD +++
Sbjct: 422 WKKNNITETYHFWQNLNENRTLWKLGTLPPGLITFYNLTQPLQRKWHLLGLGYDKGIDVK 481
Query: 632 QIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
+I+ AV+HYNG+ KPW ++ +SKY+PYW+KY
Sbjct: 482 KIERSAVIHYNGHMKPWTEMGISKYQPYWTKYT 514
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May be involved in pectin and/or xylans biosynthesis in cell walls. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1173), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/460 (49%), Positives = 309/460 (67%), Gaps = 12/460 (2%)
Query: 212 ESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPS 271
E + S + + +Q+ LAKAY +AK N L L + Q + A + P
Sbjct: 70 EVTSASSFSRQLAEQMTLAKAYVFIAKEHNNLHLAWELSSKIRSCQLLLSKAAMRGQ-PI 128
Query: 272 SALNQAQ----AMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAA 327
S ++A+ + ++ A+D YD T ++ IQ+ E A +++ QL A
Sbjct: 129 S-FDEAKPIITGLSALIYKAQDAHYDIATTMMTMKSHIQALEERANAATVQTTIFGQLVA 187
Query: 328 KIVPRPLHCLPLQLAADYYLQG--HHKKEEQINE-KFEDPSLYHYAIFSDNVLATSVVVN 384
+ +P+ LHCL ++L +D+ + H +E N + D +LYH+ IFSDNV+ATSVVVN
Sbjct: 188 EALPKSLHCLTIKLTSDWVTEPSRHELADENRNSPRLVDNNLYHFCIFSDNVIATSVVVN 247
Query: 385 STVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLR 444
STV++A P++ VFHIVT+++++ AM+ WFL N + I+I +++ F WLN+SY V++
Sbjct: 248 STVSNADHPKQLVFHIVTNRVSYKAMQAWFLSNDFKGSAIEIRSVEEFSWLNASYSPVVK 307
Query: 445 QLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDD 504
QL + YYF +S S+ K RNPKYLS+LNHLRFY+PE+YP+LEKI+FLDD
Sbjct: 308 QLLDTDARAYYFGEQ--TSQDTISEP-KVRNPKYLSLLNHLRFYIPEIYPQLEKIVFLDD 364
Query: 505 DIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGM 564
D+VVQKDLTPL+S+DLHG VNGAVETC E+FHR+ KYLNFSNPLIS F P ACGWAFGM
Sbjct: 365 DVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPLISSKFDPQACGWAFGM 424
Query: 565 NMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGY 624
N+FDL WR N+T YHYWQD N +RTLWKLGTLPPGL++FY LT PLDR WHVLGLGY
Sbjct: 425 NVFDLIAWRNANVTARYHYWQDQNRERTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGY 484
Query: 625 DPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
D ++ I+ AV+HYNGN KPWL LA+ +YKP+W K++
Sbjct: 485 DVNIDNRLIETAAVIHYNGNMKPWLKLAIGRYKPFWLKFL 524
|
May be involved in pectin and/or xylans biosynthesis in cell walls (By similarity). Involved in seed mucilage extrusion. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust.
Identities = 219/436 (50%), Positives = 305/436 (69%), Gaps = 19/436 (4%)
Query: 239 SKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQA--------MGHVLSIAKDQ 290
S+N + L N K + RA+ D++ A + S L Q + V++ AK+
Sbjct: 119 SRNYTDLIN------KPTYRALYDSDG-ASIEESVLRQFEKEVKERIKMTRQVIAEAKES 171
Query: 291 LYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGH 350
+ +Q K + I + +T K++ +F +AAK +P+ LHCL ++L +
Sbjct: 172 FDNQLKIQ-KLKDTIFAVNEQLTNAKKQGAFSSLIAAKSIPKGLHCLAMRLMEERIAHPE 230
Query: 351 HKKEEQINE--KFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFV 408
+E + + EDP+LYHYAIFSDNV+A SVVVNS V +AKEP KHVFH+VTDK+N
Sbjct: 231 KYTDEGKDRPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLG 290
Query: 409 AMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGS 468
AM++ F + A ++++ ++ + +LNSSY VL+QLESA L+++YF+ N + + +
Sbjct: 291 AMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFE-NKLENATKDT 349
Query: 469 DNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAV 528
N+K+RNPKYLS+LNHLRFYLPE+YPKL +ILFLDDD+VVQKDLT LW +D+ G VNGAV
Sbjct: 350 TNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNGAV 409
Query: 529 ETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDAN 588
ETC SFHR+ +Y+NFS+PLI E F+P AC WA+GMN FDL WR+ T YHYWQ+ N
Sbjct: 410 ETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLN 469
Query: 589 EDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPW 648
E+R LWKLGTLPPGLITFY+ T PLD+SWHVLGLGY+P++++ +I N AVVH+NGN KPW
Sbjct: 470 ENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPW 529
Query: 649 LDLAVSKYKPYWSKYV 664
LD+A+++++P W+K+V
Sbjct: 530 LDIAMNQFRPLWTKHV 545
|
Alpha-1-4-D-galacturonosyltransferase involved in homogalacturonan (HGA) synthesis, a class of pectin which plays a role in cell adhesion. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 437 bits (1125), Expect = e-121, Method: Compositional matrix adjust.
Identities = 224/456 (49%), Positives = 311/456 (68%), Gaps = 15/456 (3%)
Query: 218 STLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQA 277
S + + DQI LAKA+ +AK L + SQ + A + P + L
Sbjct: 74 SVARQVNDQIALAKAFVVIAKESKNLQFAWDLSAQIRNSQLLLSSAATRRS-PLTVLESE 132
Query: 278 QA---MGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPL 334
M +L A+ YD T+ + +A IQ+ E ++++ KSS Q+AA+ VP+ L
Sbjct: 133 STIRDMAVLLYQAQQLHYDSATMIMRLKASIQALEEQMSSVSEKSSKYGQIAAEEVPKSL 192
Query: 335 HCLPLQLAADYY----LQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHA 390
+CL ++L +++ LQ K+ +++ K D SLYH+ +FSDN++ATSVVVNST ++
Sbjct: 193 YCLGVRLTTEWFQNLDLQRTLKERSRVDSKLTDNSLYHFCVFSDNIIATSVVVNSTALNS 252
Query: 391 KEPEKHVFHIVTDKLNFVAMKMWFLVNAP--PKATIQIENIDSFKWLNSSYCSVLRQLES 448
K PEK VFH+VT+++N+ AMK WF +N T++++ + F WLN+SY VL+QL+
Sbjct: 253 KAPEKVVFHLVTNEINYAAMKAWFAINMDNLRGVTVEVQKFEDFSWLNASYVPVLKQLQD 312
Query: 449 ARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVV 508
+ + YYF ++ G +K+RNPKYLSMLNHLRFY+PEV+P L+K++FLDDD+VV
Sbjct: 313 SDTQSYYFSGHNDD----GRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVVV 368
Query: 509 QKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFD 568
QKDL+ L+S+DL+ VNGAVETC E+FHR+ KYLN+S+PLI +F P+ACGWAFGMN+FD
Sbjct: 369 QKDLSSLFSIDLNKNVNGAVETCMETFHRYHKYLNYSHPLIRSHFDPDACGWAFGMNVFD 428
Query: 569 LKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPAL 628
L EWRKRN+TGIYHYWQ+ N DRTLWKLGTLPPGL+TFY LT L+ SWH+LGLGY +
Sbjct: 429 LVEWRKRNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEALEASWHILGLGY-TNV 487
Query: 629 NLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
+ I+ GAV+H+NGN KPWL + + KYKP W +YV
Sbjct: 488 DARVIEKGAVLHFNGNLKPWLKIGIEKYKPLWERYV 523
|
May be involved in pectin and/or xylans biosynthesis in cell walls. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FWA4|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/385 (55%), Positives = 285/385 (74%), Gaps = 2/385 (0%)
Query: 281 GHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQ 340
++ + + YD +K + I + + +T K+ + ++AK VP+ LHCL ++
Sbjct: 164 ARMMIVESKESYDTQLKIQKLKDTIFAVQEQLTKAKKNGAVASLISAKSVPKSLHCLAMR 223
Query: 341 LAADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHI 400
L + K+ + EDP+LYHYAIFSDNV+A SVVV S V +A+EP KHVFH+
Sbjct: 224 LVGERISNPEKYKDAPPDPAAEDPTLYHYAIFSDNVIAVSVVVRSVVMNAEEPWKHVFHV 283
Query: 401 VTDKLNFVAMKMWFLVNAPPK-ATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYFKAN 459
VTD++N AMK+WF + + A ++I++++ FK+LNSSY VLRQLESA+L+++YF+ N
Sbjct: 284 VTDRMNLAAMKVWFKMRPLDRGAHVEIKSVEDFKFLNSSYAPVLRQLESAKLQKFYFE-N 342
Query: 460 HPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVD 519
+ + S NLK++NPKYLSMLNHLRFYLPE+YPKL KILFLDDD+VVQKD+T LW ++
Sbjct: 343 QAENATKDSHNLKFKNPKYLSMLNHLRFYLPEMYPKLNKILFLDDDVVVQKDVTGLWKIN 402
Query: 520 LHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITG 579
L G VNGAVETC SFHR+ +YLNFS+PLI ENF+P+AC WAFGMN+FDL WR+ T
Sbjct: 403 LDGKVNGAVETCFGSFHRYGQYLNFSHPLIKENFNPSACAWAFGMNIFDLNAWRREKCTD 462
Query: 580 IYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVV 639
YHYWQ+ NEDRTLWKLGTLPPGLITFY+ T LD+SWHVLGLGY+P +++ +I N V+
Sbjct: 463 QYHYWQNLNEDRTLWKLGTLPPGLITFYSKTKSLDKSWHVLGLGYNPGVSMDEIRNAGVI 522
Query: 640 HYNGNNKPWLDLAVSKYKPYWSKYV 664
HYNGN KPWLD+A+++YK W+KYV
Sbjct: 523 HYNGNMKPWLDIAMNQYKSLWTKYV 547
|
May be involved in pectin synthesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|Q8RXE1|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/452 (43%), Positives = 282/452 (62%), Gaps = 29/452 (6%)
Query: 216 TDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALN 275
TD +K +RD+II AKAY ++A N S + L KE +RA GD D LP S+ N
Sbjct: 171 TDERVKEIRDKIIQAKAYLNLALPGNNSQIVKELRVRTKELERATGDTTKDKYLPKSSPN 230
Query: 276 QAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLH 335
+ +AM L ++CP + K +AM TE A K+++++L+QLAA+ P+ LH
Sbjct: 231 RLKAMEVALYKVSRAFHNCPAIATKLQAMTYKTEEQARAQKKQAAYLMQLAARTTPKGLH 290
Query: 336 CLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEK 395
CL ++L +Y+ H K++ + + + DP LYHY +FSDNVLA+SVVVNST++ +KEP+K
Sbjct: 291 CLSMRLTTEYFTLDHEKRQ-LLQQSYNDPDLYHYVVFSDNVLASSVVVNSTISSSKEPDK 349
Query: 396 HVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYY 455
VFH+VTD LN+ A+ MWFL+N +A+IQI NID L + +L + S+
Sbjct: 350 IVFHVVTDSLNYPAISMWFLLNPSGRASIQILNIDEMNVLPLYHAELLMKQNSS------ 403
Query: 456 FKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPL 515
+P+ +S LNH RFYLP+++P L KI+ D D+VVQ+DLT L
Sbjct: 404 -------------------DPRIISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLTRL 444
Query: 516 WSVDLHGMVNGAVETCKE---SFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEW 572
WS+D+ G V GAVETC E S+ D ++NFS+ +S+ F P AC WAFGMN+FDL+EW
Sbjct: 445 WSLDMTGKVVGAVETCLEGDPSYRSMDSFINFSDAWVSQKFDPKACTWAFGMNLFDLEEW 504
Query: 573 RKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQ 632
R++ +T +Y + D LWK G LP G +TF+ T+PL++ W+V GLG++ L +
Sbjct: 505 RRQELTSVYLKYFDLGVKGHLWKAGGLPVGWLTFFGQTFPLEKRWNVGGLGHESGLRASD 564
Query: 633 IDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
I+ AV+HY+G KPWLD+ + KYK YW+ +V
Sbjct: 565 IEQAAVIHYDGIMKPWLDIGIDKYKRYWNIHV 596
|
May be involved in pectin and/or xylans biosynthesis in cell walls. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1991 | ||||||
| 118488304 | 749 | unknown [Populus trichocarpa] | 0.362 | 0.962 | 0.661 | 0.0 | |
| 224132434 | 749 | predicted protein [Populus trichocarpa] | 0.362 | 0.962 | 0.659 | 0.0 | |
| 224132436 | 655 | glycosyltransferase, family GT8 [Populus | 0.300 | 0.914 | 0.75 | 0.0 | |
| 297744484 | 2090 | unnamed protein product [Vitis vinifera] | 0.304 | 0.289 | 0.740 | 0.0 | |
| 255586514 | 642 | Glycosyltransferase QUASIMODO1, putative | 0.295 | 0.915 | 0.732 | 0.0 | |
| 225428280 | 742 | PREDICTED: pentatricopeptide repeat-cont | 0.362 | 0.971 | 0.636 | 0.0 | |
| 449476532 | 680 | PREDICTED: probable galacturonosyltransf | 0.323 | 0.948 | 0.686 | 0.0 | |
| 449454412 | 659 | PREDICTED: probable galacturonosyltransf | 0.306 | 0.927 | 0.724 | 0.0 | |
| 356553425 | 1328 | PREDICTED: niemann-Pick C1 protein-like | 0.294 | 0.441 | 0.732 | 0.0 | |
| 297797812 | 680 | hypothetical protein ARALYDRAFT_912279 [ | 0.311 | 0.913 | 0.701 | 0.0 |
| >gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/729 (66%), Positives = 580/729 (79%), Gaps = 8/729 (1%)
Query: 670 RLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYIHGRLVH 729
+L W LR+KE S NGKWQE+ SHYHE KK + D SV+P ++KA S LS+ HG+ +H
Sbjct: 11 KLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLH 70
Query: 730 ACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCI-CRDSVSWNIMIQGHLDHGTL 788
ACL+KQG++SFTSIGN++M FY++ D AV VF+ RDSVSWNI+I GHLD+G L
Sbjct: 71 ACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGAL 130
Query: 789 GEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSV 848
GLWWF ARVAGFEPN S +VLVIQACR LG ++GL +HGY+I+SG WA+ SVQNS+
Sbjct: 131 VAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSL 190
Query: 849 LSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDG 908
LSMYVDADMECAR+LFDEM E+DVI+WSVMIGGY+Q E GL++FR+MV EPDG
Sbjct: 191 LSMYVDADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDG 250
Query: 909 QSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSE 968
+VSVLKAC + RD+ GR+VHGLVI+RG CDLFV NSLIDMY+KCKD SAFKVF+E
Sbjct: 251 VVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNE 310
Query: 969 MPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMEC 1028
+ Q+N VSWNS LSG V+NE YSEA SL+ SM K E DE+TLVNILQICK FVHP C
Sbjct: 311 ISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHC 370
Query: 1029 KSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLC 1088
KS+HCV++RR E+NELVL++LID Y+KC+L+E+AW++F +++ DVV WSTMI+GF C
Sbjct: 371 KSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHC 430
Query: 1089 GRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVG 1148
G+P EAIAV+QEM++ KPN ITIINLLEACSV EL SKWAHG+AIR+ A EV VG
Sbjct: 431 GKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVG 490
Query: 1149 TAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ 1208
TAVVDMY+KCG I ASR+AFDQ++ KNIV+WSAM+AAYGMNGLAHEALAL AEMK GL+
Sbjct: 491 TAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLK 550
Query: 1209 PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAID 1268
PN VTTLSVL+ACSHGGLVEEGLS F SMVQ+ G+EP EHYSCMVDML RAG+LD AI+
Sbjct: 551 PNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIE 610
Query: 1269 LINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328
+I MPDNLK AS WG+LLSACRSYG TELG A SR+LELE NSAGYL+ASSMYAA
Sbjct: 611 VIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAAD 670
Query: 1329 GLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLA----- 1383
GLW +++ R+LAKE+GVKVVAG SLVH+DNKAC+F+AG+ SHPR E+ +A
Sbjct: 671 GLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDG--SHPRSDEIFSMAQQLHD 728
Query: 1384 CLVTAEKTD 1392
C+ EK +
Sbjct: 729 CIKIDEKKE 737
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa] gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 981 bits (2536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/729 (65%), Positives = 579/729 (79%), Gaps = 8/729 (1%)
Query: 670 RLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYIHGRLVH 729
+L W LR+KE S NGKWQE+ SHYHE KK + D SV+P ++KA S LS+ HG+ +H
Sbjct: 11 KLPNWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLH 70
Query: 730 ACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCI-CRDSVSWNIMIQGHLDHGTL 788
ACL+KQG++SFTSIGN++M FY++ D AV VF+ RDSVSWNI+I GHLD+G L
Sbjct: 71 ACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGAL 130
Query: 789 GEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSV 848
GLWWF ARVAGFEPN S +VLVIQACR LG ++GL +HGY+I+SG WA+ SVQNS+
Sbjct: 131 VAGLWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSL 190
Query: 849 LSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDG 908
LSMYVDADMECAR+LFDEM E+DVI+WSVMIGGY+Q E GL++FR+MV EPDG
Sbjct: 191 LSMYVDADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDG 250
Query: 909 QSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSE 968
+VSVLKAC + RD+ GR+VHGLVI+RG CDLFV NSLIDMY+KCKD SAFKVF+E
Sbjct: 251 VVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNE 310
Query: 969 MPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMEC 1028
+ Q+N VSWNS LSG V+NE YSEA SL+ SM K E DE+TLVNILQICK FVHP C
Sbjct: 311 ISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHC 370
Query: 1029 KSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLC 1088
KS+HCV++RR E+NELVL++LID Y+KC+L+E+AW++F +++ DVV WSTMI+GF C
Sbjct: 371 KSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHC 430
Query: 1089 GRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVG 1148
G+P EAIAV+QEM++ KPN ITIINLLEACSV EL SKWAHG+AIR+ A EV VG
Sbjct: 431 GKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFASEVTVG 490
Query: 1149 TAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ 1208
TAVVDMY+KCG I ASR+AFDQ++ KNIV+WSAM+AAYGMNGLAHEALAL AEMK GL+
Sbjct: 491 TAVVDMYSKCGEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLK 550
Query: 1209 PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAID 1268
PN VTTLSVL+ACSHGGLVEEGLS F SMVQ+ G+EP EHYSCMVDML RAG+LD AI+
Sbjct: 551 PNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIE 610
Query: 1269 LINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328
+I MP NLK AS WG+LLSACRSYG TELG A SR+LELE NSAGYL+ASSMYAA
Sbjct: 611 VIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAAD 670
Query: 1329 GLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLA----- 1383
GLW +++ R+LAKE+GVKVVAG SLVH+DNKAC+F+AG+ SHPR E+ +A
Sbjct: 671 GLWDDAARIRVLAKEKGVKVVAGYSLVHIDNKACRFVAGDG--SHPRSDEIFSMAQQLHD 728
Query: 1384 CLVTAEKTD 1392
C+ EK +
Sbjct: 729 CIKIDEKKE 737
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132436|ref|XP_002328269.1| glycosyltransferase, family GT8 [Populus trichocarpa] gi|222837784|gb|EEE76149.1| glycosyltransferase, family GT8 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/600 (75%), Positives = 513/600 (85%), Gaps = 1/600 (0%)
Query: 66 DIKDIDIIATYSDVSGAVRISRVKMSHLSASWILENPADGDNGLPNSSQTLGDSFQAGMN 125
D DI+IIATYSD SGAVR SRVKMS LS SW+LENPAD ++ P +SQ L DS +AG
Sbjct: 41 DEMDINIIATYSDTSGAVRTSRVKMSDLSPSWVLENPADKNHDQPKTSQRLEDSSKAGAT 100
Query: 126 LEENVEYPMGDHQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQDN-ENDNI 184
E++V + DHQ E G + K P+SPVKL+RQ R+ R LRT+ LI+QD D+
Sbjct: 101 HEDDVLHSARDHQYGEGGIPSSWKLPMSPVKLQRQTARKDRRVLRTSVLIQQDKGAADSQ 160
Query: 185 MQETAFEQSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKAYAHVAKSKNESS 244
+ TAF SK L+ + GKYSIWRRDF+SPN+DSTLKLMRDQII+AKAYA++AKS N ++
Sbjct: 161 TEATAFIWSKSLDTSIKGKYSIWRRDFDSPNSDSTLKLMRDQIIMAKAYANIAKSNNVTT 220
Query: 245 LYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAM 304
LYNSLMK +ESQ AIG+A SDAEL SAL QA+AMGHVLSIAKDQLY+CPT+ RK RAM
Sbjct: 221 LYNSLMKQSRESQLAIGEAMSDAELHPSALVQAKAMGHVLSIAKDQLYECPTMSRKLRAM 280
Query: 305 IQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDP 364
+Q E V ALK+KS+FLIQLAAK +P+PLHCLPLQLAADY+L G+ K+ EK +DP
Sbjct: 281 LQLNEENVNALKKKSAFLIQLAAKTIPKPLHCLPLQLAADYFLYGYQNKKYLDKEKVQDP 340
Query: 365 SLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATI 424
SL+HYAIFSDNVLATSVV+NSTV HAK+P+KHVFHIVTDKLNF AMKMWF+VN P KAT+
Sbjct: 341 SLFHYAIFSDNVLATSVVINSTVQHAKDPQKHVFHIVTDKLNFAAMKMWFIVNPPAKATV 400
Query: 425 QIENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNH 484
Q+ENID FKWLN+SYCSVLRQLESAR+KEYYFKANHPSSL++G+DNLKYRNPKYLSMLNH
Sbjct: 401 QVENIDDFKWLNASYCSVLRQLESARIKEYYFKANHPSSLASGADNLKYRNPKYLSMLNH 460
Query: 485 LRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNF 544
LRFYLPEVYPKL+KILFLDDDIVVQKDLTPLWS+DL GMVNGAVETCKESFHRFDKYLNF
Sbjct: 461 LRFYLPEVYPKLDKILFLDDDIVVQKDLTPLWSIDLQGMVNGAVETCKESFHRFDKYLNF 520
Query: 545 SNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLI 604
SNP I NF PNACGWAFGMNMFDLK+W++ NITGIYH+WQD NEDRTLWKLG+LPPGLI
Sbjct: 521 SNPKIYNNFDPNACGWAFGMNMFDLKQWKRSNITGIYHHWQDLNEDRTLWKLGSLPPGLI 580
Query: 605 TFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
TFYNLTYPLDRSWHVLGLGYDPALN T+I+N AVVHYNGN KPWLDLAV+KYKPYWS+YV
Sbjct: 581 TFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAVAKYKPYWSRYV 640
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/617 (74%), Positives = 524/617 (84%), Gaps = 11/617 (1%)
Query: 1378 EVILLACLVTAEKTDT--LLIKDVTSSERHSKEYCAMYDICGERSDGKVLNCPYGSPSVK 1435
+V++ A L+ AEKTD+ LL + TS ERHS EYCAMYDICGERSDGKVLNCPYG+P+VK
Sbjct: 821 QVLIFASLLGAEKTDSQFLLFPNATSGERHSPEYCAMYDICGERSDGKVLNCPYGTPAVK 880
Query: 1436 PDELFSAKIESLCPSISGNVCCTETQFETLRAQVQQAIPFLVGCPACLRNFLNLFCELSC 1495
PDE SAKI+SLCP ISGNVCCTE QF+TLRAQVQQAIPFLVGCPACLRNFLNLFCELSC
Sbjct: 881 PDEFLSAKIQSLCPMISGNVCCTEAQFDTLRAQVQQAIPFLVGCPACLRNFLNLFCELSC 940
Query: 1496 SPNQSQFINVTSVSEVNGNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDFIGAG 1555
SPNQS FINVTS+++ N + TVDGID+YV+ FGE LYNSCKDVKFGTMNTRAI FIGAG
Sbjct: 941 SPNQSLFINVTSIAKGNCSSTVDGIDFYVSDAFGEGLYNSCKDVKFGTMNTRAIQFIGAG 1000
Query: 1556 AKSFKEWFAFIGQKAPPGFPGSPYAINFKLSIPESSGLELMNVSTYSCGDTSLGCSCGDC 1615
A++FKEWFAFIGQ+A G PGSPYAINFK S PESSG+ELMNVS YSCGDTSLGCSCGDC
Sbjct: 1001 ARNFKEWFAFIGQQADLGMPGSPYAINFK-SRPESSGMELMNVSIYSCGDTSLGCSCGDC 1059
Query: 1616 PLSPMCSSSEPPSPPRKEACTIRIGSLKVKCVELSLVIAYVVLISTFFGWALFQRTRERR 1675
P SP+CS EPPSP +K+AC+I +GS+KVKC+E SL I Y+VL+S FFGW LF RTRERR
Sbjct: 1060 PSSPVCSDYEPPSPQQKDACSISLGSVKVKCIEFSLAILYIVLVSAFFGWGLFHRTRERR 1119
Query: 1676 -IPPSSVEPLIKSTSDSGPDSGIMEEVNARDLLPTEGG-GLSVVQGYMLSFYRTYGRWVA 1733
IP S+++PL+ + + + +++P E LS VQGYM SFYR YG WVA
Sbjct: 1120 RIPASNMKPLLNFEDEK------LTTLKVHEMVPQETNVQLSAVQGYMSSFYRQYGTWVA 1173
Query: 1734 ANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQ 1793
NP+ VLCMSLA+ +LCLG+IRFKVETRPEKLWVGPGSRAA EK FFDSHLAPFYRIEQ
Sbjct: 1174 KNPSLVLCMSLAVVLILCLGLIRFKVETRPEKLWVGPGSRAAEEKNFFDSHLAPFYRIEQ 1233
Query: 1794 LILATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPLGEDCA 1853
LILAT+PD K+GK SI+++DN QLLFE+QKKVDG+RAN S S+VS+TDICLKP+G+DCA
Sbjct: 1234 LILATMPDIKSGKSSSIVSDDNIQLLFEIQKKVDGLRANYSGSVVSLTDICLKPMGQDCA 1293
Query: 1854 SQSVLQYFKMDPENYDSYGGIEHAEYCFQHYASSDTCLSAFKAPLDPSTVLGGFSGNNYS 1913
+QSVLQYFKMDPENY YGG++H EYCFQHY ++DTC+SAFKAPLDPST LGGFSGNNY+
Sbjct: 1294 TQSVLQYFKMDPENYYGYGGVQHVEYCFQHYTTADTCMSAFKAPLDPSTALGGFSGNNYT 1353
Query: 1914 EASAFIITYPVNNAIDETSKENRKAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLE 1973
EASAFI+TYPVNNAI EN KAVAWEKAF+QL K+ELL MVQS NLTLSFSSESS+E
Sbjct: 1354 EASAFIVTYPVNNAIGGAGNENGKAVAWEKAFVQLVKDELLSMVQSRNLTLSFSSESSIE 1413
Query: 1974 EELKRESTADVVTIVVS 1990
EELKRESTADV+TI +S
Sbjct: 1414 EELKRESTADVITISIS 1430
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255586514|ref|XP_002533896.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi|223526147|gb|EEF28486.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2425), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/599 (73%), Positives = 512/599 (85%), Gaps = 11/599 (1%)
Query: 68 KDIDIIATYSDVSGAVRISRVKMSHLSASWILENPADGDNGLPNSSQTL--GDSFQAGMN 125
KDIDI+ATYSD SG++RI RVKM LSASW+LENP D D+ P +SQ + G SF +G+
Sbjct: 39 KDIDILATYSDASGSIRIKRVKMKDLSASWVLENPVDKDHDHPKASQVMYQGSSFHSGIE 98
Query: 126 LEENVEYPMGDHQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQDNENDNIM 185
L+++VE+ +G + K SPV+L+RQ +R+KR +LRTA LI+QD E DN
Sbjct: 99 LQDSVEH---------LGIHHPPKLATSPVRLQRQEMRRKRRDLRTALLIQQDKEADNQT 149
Query: 186 QETAFEQSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSL 245
+ A ++S+ L+ V+GKYSIWRRD+E+PN+DS LKLMRDQII+AKAYA++AKS N++SL
Sbjct: 150 RAAAIKRSESLDTTVSGKYSIWRRDYENPNSDSILKLMRDQIIMAKAYANIAKSNNKTSL 209
Query: 246 YNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMI 305
Y+SLMKH +ES+RAIG+A SDAEL SAL++A+AMGHVLSIAKDQL++C T+ RK RAM+
Sbjct: 210 YDSLMKHFRESKRAIGEATSDAELHPSALSRAKAMGHVLSIAKDQLFECNTMARKLRAML 269
Query: 306 QSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPS 365
QS E V AL++KS FLIQLAAK VP+PLHC PLQLAADY++ GHH KE EK +D S
Sbjct: 270 QSNEQDVNALRKKSGFLIQLAAKTVPKPLHCFPLQLAADYFMHGHHNKEYVNKEKLDDVS 329
Query: 366 LYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQ 425
LYHYAIFSDNVLATSVVVNSTV HAK PEKHVFHIVTDKLNF AM+MWF++ P KAT++
Sbjct: 330 LYHYAIFSDNVLATSVVVNSTVLHAKNPEKHVFHIVTDKLNFAAMRMWFIIYPPAKATVE 389
Query: 426 IENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHL 485
++NID FKWLNSSYCSVLRQLESAR+KEYYFKANHPSSLSAG+DNLKYRNPKYLSMLNHL
Sbjct: 390 VQNIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHL 449
Query: 486 RFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFS 545
RFYLPEV+PKL+KILFLDDD+VVQKDLTPLWSVDL GMVNGAVETCKESFHRFDKYLNFS
Sbjct: 450 RFYLPEVFPKLDKILFLDDDVVVQKDLTPLWSVDLQGMVNGAVETCKESFHRFDKYLNFS 509
Query: 546 NPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLIT 605
NP I ENF+ NACGWA+GMN+FDLKEW+KRNITGIYH+WQD NEDRTLWKLGTLPPGLIT
Sbjct: 510 NPKIYENFNSNACGWAYGMNIFDLKEWKKRNITGIYHHWQDLNEDRTLWKLGTLPPGLIT 569
Query: 606 FYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
FYNLT+PLDR WHVLGLGYDPALN T+I+N AVVHYNGN KPWLDLA+ KYK YWS YV
Sbjct: 570 FYNLTFPLDRRWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIHKYKSYWSAYV 628
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17210-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 466/732 (63%), Positives = 560/732 (76%), Gaps = 11/732 (1%)
Query: 670 RLRTWNLRVKELSKNGKWQ---ELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYIHGR 726
+L WNL +K+ S N KW E S YH+ KK L DP++ ++KACS+L HG+
Sbjct: 11 KLPNWNLGIKD-STNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLPVRHGK 69
Query: 727 LVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHG 786
+HA L+KQG++S TS GN+++DFYMK DSA+ VFD RDSVSWNIMI GHL G
Sbjct: 70 SIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRG 129
Query: 787 TLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQN 846
+GLWWF +ARV FEPN S LVL I ACR LGA EGL++HGYIIRSG + SVQN
Sbjct: 130 ASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQN 189
Query: 847 SVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEP 906
S+LSMY D DME A +LFDEMCERDVISWSVMIGGYVQ+ EA L+LF +M S E
Sbjct: 190 SLLSMYADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIEL 249
Query: 907 DGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVF 966
DG ++VSVLKAC N D++MGR VHG+VI RGL DLFVGNS+IDMY+KC D +SAFK F
Sbjct: 250 DGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAF 309
Query: 967 SEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPM 1026
+EMP +N VSWNS +SGLV EK+SEALSL YSMGK DE+TLVN+LQ CK FV P
Sbjct: 310 NEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPF 369
Query: 1027 ECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFT 1086
+CK +H +++R +E NE V+NSLID YSKC L+ELAWKLF+ +K D V WS MIAGF
Sbjct: 370 QCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFN 429
Query: 1087 LCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVA 1146
CG+P EAIA+FQEMNQAQEKPN +TI++LLEA SV+ +L SKWAHGIAIRR LA EVA
Sbjct: 430 HCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVA 489
Query: 1147 VGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG 1206
VGTA++DMYAKCG I SRKAFDQI KNIVSW AM+AA GMNGLA +ALAL++EMKL G
Sbjct: 490 VGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHG 549
Query: 1207 LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIA 1266
L+PN VTTLSVLSACSHGGLVEEGLSFF +MVQDHGVEP LEHYSCMVDML+RAG+L+ A
Sbjct: 550 LKPNVVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSA 609
Query: 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326
++LI +MP+ ++ A WGALLSACRS GN+ LGAGA R+LELE Q+SAGY LASSMYA
Sbjct: 610 MNLIEKMPERMRDGAGLWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYA 669
Query: 1327 AGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVI-----L 1381
A GLW +++ R L K RGV+VVAG SLVHV++KA +F+AG+ +SHPR E+ L
Sbjct: 670 ASGLWADAARMRWLVKARGVRVVAGYSLVHVEDKAWRFVAGD--ESHPRAGEIWGVVEQL 727
Query: 1382 LACLVTAEKTDT 1393
C+ AE+ ++
Sbjct: 728 HDCMKIAERNES 739
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449476532|ref|XP_004154763.1| PREDICTED: probable galacturonosyltransferase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/667 (68%), Positives = 525/667 (78%), Gaps = 22/667 (3%)
Query: 7 FFTLSSFDRLLVVAL--------SLVIVHITTVNAEVPDVRRLQRELKAHRPLYDKGDGA 58
F S F + +V L SL +H + V+A + ++ LQ + D
Sbjct: 15 LFIFSVFQVVSLVGLIGVDASNASLTFMH-SEVHAPIDQLKCLQEQ-----------DTG 62
Query: 59 ARFNNDPDIKDIDIIATYSDVSGAVRISRVKMSHLSASWILENPADGDNGLPNSSQTLGD 118
R + + D KDIDIIA YSD SGA R+ RVK+ LSASWI EN DG++ P SSQT D
Sbjct: 63 NRISTNEDDKDIDIIAAYSDPSGAFRLGRVKLKDLSASWIWENSLDGNHHQPLSSQT--D 120
Query: 119 SFQAGMNLEENVEYPMGDHQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQD 178
+ +E + + + DH E + ++PVKLKRQ +R +R LR AELIR+D
Sbjct: 121 QLNSRNENKEIMVHSVDDHPPGEGEAEFSRLSSMNPVKLKRQAMRLERRALRAAELIRED 180
Query: 179 NENDNIMQETAFEQSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKAYAHVAK 238
E DN M A E+SK + V GKYSIWRRDFE+P +DSTLKLMRDQII+AKAYA++A+
Sbjct: 181 KEIDNQMAAAAIERSKNFDTTVKGKYSIWRRDFENPKSDSTLKLMRDQIIMAKAYANIAR 240
Query: 239 SKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQ 298
SKN++ LYN+LM+HC+ESQ AIG+ANSDA L SAL++A+AMGH L++AKD+LYDC T+
Sbjct: 241 SKNDTGLYNTLMRHCRESQLAIGEANSDAGLHPSALDRAKAMGHALAMAKDELYDCLTMA 300
Query: 299 RKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQIN 358
RK RAM+QSTE V A K+KS+FL QLAAK VP+ LHCLPLQLA DY+L GHH
Sbjct: 301 RKLRAMLQSTEENVNAQKKKSAFLTQLAAKTVPKSLHCLPLQLAGDYFLHGHHLNHNIDR 360
Query: 359 EKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNA 418
EK E+PSLYHYAIFSDNVLATSVVVNSTV HAKEPEKHVFHIVTDKLNF AM+MWFLVN+
Sbjct: 361 EKIENPSLYHYAIFSDNVLATSVVVNSTVLHAKEPEKHVFHIVTDKLNFAAMRMWFLVNS 420
Query: 419 PPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKY 478
P K TI ++NID FKWLNSSYCSVLRQLESARLKEYYFKANHPSSLS G DNLKYRNPKY
Sbjct: 421 PSKPTIHVQNIDDFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSVGMDNLKYRNPKY 480
Query: 479 LSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRF 538
LSMLNHLRFYLPEVYPKL+KILFLDDDIVVQKDLT LW +DL GMVNGAVETCKESFHRF
Sbjct: 481 LSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLTSLWDIDLKGMVNGAVETCKESFHRF 540
Query: 539 DKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGT 598
DKYLNFSNP ISENF PNACGWAFGMN+FDLKEWRKRN+TGIYHYWQD NEDRTLWKLG+
Sbjct: 541 DKYLNFSNPKISENFDPNACGWAFGMNIFDLKEWRKRNMTGIYHYWQDLNEDRTLWKLGS 600
Query: 599 LPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKP 658
LPPGLITFYNLTYPLDR WHVLGLGYDPALN+T+I+N AV+HYNGN KPWLDLAVSKYK
Sbjct: 601 LPPGLITFYNLTYPLDRGWHVLGLGYDPALNVTEIENAAVIHYNGNYKPWLDLAVSKYKS 660
Query: 659 YWSKYVI 665
YWSKYV+
Sbjct: 661 YWSKYVM 667
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454412|ref|XP_004144949.1| PREDICTED: probable galacturonosyltransferase 3-like [Cucumis sativus] gi|449472530|ref|XP_004153622.1| PREDICTED: probable galacturonosyltransferase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/613 (72%), Positives = 506/613 (82%), Gaps = 2/613 (0%)
Query: 53 DKGDGAARFNNDPDIKDIDIIATYSDVSGAVRISRVKMSHLSASWILENPADGDNGLPNS 112
++ D R + + D KDIDIIA YSD SGA R+ RVK+ LSASWI EN DG++ P S
Sbjct: 36 EEQDTGNRISTNEDDKDIDIIAAYSDPSGAFRLGRVKLKDLSASWIWENSLDGNHHQPLS 95
Query: 113 SQTLGDSFQAGMNLEENVEYPMGDHQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTA 172
SQ+ D + +E + + + DH E + ++PVKLKRQ +R +R LR A
Sbjct: 96 SQS--DQLNSRKENKEIMVHSVDDHPPGEGEAEFSRLSSMNPVKLKRQAMRLERRALRAA 153
Query: 173 ELIRQDNENDNIMQETAFEQSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKA 232
ELIR+D E DN M A E+S+ + V GKYSIWRRDFE+P +DSTLKLMRDQII+AKA
Sbjct: 154 ELIREDKEIDNQMAAAAIERSQNFDTTVKGKYSIWRRDFENPKSDSTLKLMRDQIIMAKA 213
Query: 233 YAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLY 292
YA++A+SKN++ LYN+LM+HC+ESQ AIG+ANSDA L SAL++A+AMGH L++AKD+LY
Sbjct: 214 YANIARSKNDTGLYNTLMRHCRESQLAIGEANSDAGLHPSALDRAKAMGHALAMAKDELY 273
Query: 293 DCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHK 352
DC T+ RK RAM+QSTE V A K+KS+FL QLAAK VP+ LHCLPLQLA DY+L GHH
Sbjct: 274 DCLTMARKLRAMLQSTEENVNAQKKKSAFLTQLAAKTVPKSLHCLPLQLAGDYFLHGHHL 333
Query: 353 KEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKM 412
EK E+PSLYHYAIFSDNVLATSVVVNSTV HAKEPEKHVFHIVTDKLNF AM+M
Sbjct: 334 NHNIDREKIENPSLYHYAIFSDNVLATSVVVNSTVLHAKEPEKHVFHIVTDKLNFAAMRM 393
Query: 413 WFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLK 472
WFLVN+P K TI ++NID FKWLNSSYCSVLRQLESARLKEYYFKANHPSSLS G DNLK
Sbjct: 394 WFLVNSPSKPTIHVQNIDDFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSVGMDNLK 453
Query: 473 YRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCK 532
YRNPKYLSMLNHLRFYLPEVYPKL+KILFLDDDIVVQKDLT LW +DL GMVNGAVETCK
Sbjct: 454 YRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLTSLWDIDLKGMVNGAVETCK 513
Query: 533 ESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRT 592
ESFHRFDKYLNFSNP ISENF PNACGWAFGMN+FDLKEWRKRN+TGIYHYWQD NEDRT
Sbjct: 514 ESFHRFDKYLNFSNPKISENFDPNACGWAFGMNIFDLKEWRKRNMTGIYHYWQDLNEDRT 573
Query: 593 LWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLA 652
LWKLG+LPPGLITFYNLTYPLDR WHVLGLGYDPALN+T+I+N AV+HYNGN KPWLDLA
Sbjct: 574 LWKLGSLPPGLITFYNLTYPLDRGWHVLGLGYDPALNVTEIENAAVIHYNGNYKPWLDLA 633
Query: 653 VSKYKPYWSKYVI 665
VSKYK YWSKYV+
Sbjct: 634 VSKYKSYWSKYVM 646
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553425|ref|XP_003545057.1| PREDICTED: niemann-Pick C1 protein-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/594 (73%), Positives = 501/594 (84%), Gaps = 8/594 (1%)
Query: 1404 RHSKEYCAMYDICGERSDGKVLNCPYGSPSVKPDELFSAKIESLCPSISGNVCCTETQFE 1463
+HS+EYCAMYDICG+ SDGK LNCPYGSPSVKPD+L SAKI+SLCP+I+GNVCCT QF+
Sbjct: 72 KHSEEYCAMYDICGQSSDGKALNCPYGSPSVKPDDLLSAKIQSLCPTITGNVCCTADQFD 131
Query: 1464 TLRAQVQQAIPFLVGCPACLRNFLNLFCELSCSPNQSQFINVTSVSEVNGNLTVDGIDYY 1523
TLR QVQQA+P LVGCPACLRNFLNLFCELSCSPNQS FINVTS+SEVNGN+TVDGIDYY
Sbjct: 132 TLRVQVQQAVPILVGCPACLRNFLNLFCELSCSPNQSLFINVTSISEVNGNMTVDGIDYY 191
Query: 1524 VTSTFGEELYNSCKDVKFGTMNTRAIDFIGAGAKSFKEWFAFIGQKAPPGFPGSPYAINF 1583
+T TFGE LY SCKDVKFGTMNTRAIDF+GAGA +FKEWFAF+GQK PPGFPGSPY+I F
Sbjct: 192 ITETFGEGLYESCKDVKFGTMNTRAIDFVGAGASNFKEWFAFLGQKVPPGFPGSPYSILF 251
Query: 1584 KLSIPESSGLELMNVSTYSCGDTSLGCSCGDCPLSPMCSSSEPPSPPRKEACTIRIGSLK 1643
K +I +SS ++LMN S YSC DTSLGCSCGDCP SP+CS SEP SPPRK+ C+IRIGSLK
Sbjct: 252 KTTILDSSPMKLMNASVYSCNDTSLGCSCGDCPSSPVCSGSEP-SPPRKDPCSIRIGSLK 310
Query: 1644 VKCVELSLVIAYVVLISTFFGWALFQRTRERRIPPSSVEPLIKSTSDSGPDSGIME---- 1699
V+CV+ S+ I Y+VL+ FGWAL QRTR RR S VEPL+ D G ++
Sbjct: 311 VRCVDFSMAILYIVLVFVLFGWALLQRTRGRRRLGSGVEPLLDDMVDEGSSFANLQKDGT 370
Query: 1700 ---EVNARDLLPTEGGGLSVVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIR 1756
EV D S VQG + SFYRTYGRW P VLC SL I +LCLG++R
Sbjct: 371 HPAEVQQIDPQGQNVVQFSFVQGCLSSFYRTYGRWATRKPTIVLCSSLTIVVLLCLGLLR 430
Query: 1757 FKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLPDPKNGKQPSIITEDNF 1816
F+VETRPEKLWVGPGS+AA EK+FFDSHLAPFYRIEQLI+AT+P+ K+GK PSIITE+N
Sbjct: 431 FEVETRPEKLWVGPGSKAAEEKEFFDSHLAPFYRIEQLIIATIPESKHGKPPSIITEENI 490
Query: 1817 QLLFEMQKKVDGVRANDSASLVSITDICLKPLGEDCASQSVLQYFKMDPENYDSYGGIEH 1876
+LLFE+Q+KVDG+RAN S LVS++DICLKPLG+DCASQS+LQYF+MDP+NYD+YGG+EH
Sbjct: 491 ELLFEIQEKVDGIRANYSGLLVSLSDICLKPLGDDCASQSILQYFQMDPDNYDNYGGVEH 550
Query: 1877 AEYCFQHYASSDTCLSAFKAPLDPSTVLGGFSGNNYSEASAFIITYPVNNAIDETSKENR 1936
AEYCFQHY S++TC SAFKAPL+P+T LGGFSGNNYSEASAF+ITYPVNNAI + EN
Sbjct: 551 AEYCFQHYTSTETCFSAFKAPLEPTTALGGFSGNNYSEASAFVITYPVNNAITKVGDENG 610
Query: 1937 KAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTIVVS 1990
KA+AWEKAFIQLAKEELLPMVQSSNLTLSFS+ESS+EEELKRESTADV+TI+VS
Sbjct: 611 KAIAWEKAFIQLAKEELLPMVQSSNLTLSFSTESSIEEELKRESTADVITILVS 664
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797812|ref|XP_002866790.1| hypothetical protein ARALYDRAFT_912279 [Arabidopsis lyrata subsp. lyrata] gi|297312626|gb|EFH43049.1| hypothetical protein ARALYDRAFT_912279 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/636 (70%), Positives = 509/636 (80%), Gaps = 15/636 (2%)
Query: 42 QRELKAHRPLYDK------GDGAARFNNDPDIKDIDIIATYSDVSGAVRISRVKMSHLSA 95
RELKA+RPL D AA + DPD+KD++I+ATYSD G +R RVKM LS
Sbjct: 33 HRELKAYRPLQDNNLEEVYASSAAAVHYDPDLKDVNIVATYSDHYGNIRFGRVKMGDLST 92
Query: 96 SWILENPADGDNGLPNSSQTL--GDSFQAGMNLEENVEYPMGDHQSE-EVGFFNRQKPPL 152
SW+ ENPA +G Q + DSFQ +E+N + E E F N +
Sbjct: 93 SWVFENPAYQVSGRKKGPQLVIPRDSFQNDTGIEDNASRSTTNQTDESENQFPNVEFA-- 150
Query: 153 SPVKLKRQMLRQKRMELRTAELIRQDNENDNIMQETAFEQSKRLEPRVTGKYSIWRRDFE 212
+P KLKRQ+LRQ+R RT ELI+Q+ E D MQE A E+S E V GKYSIWRRD+E
Sbjct: 151 NPAKLKRQILRQERRGQRTLELIQQEKETDEQMQEAAIEKSMSFENSVIGKYSIWRRDYE 210
Query: 213 SPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSS 272
SPN D+ LKLMRDQII+AKAYA++AKS+N ++LY LM+ C E+QR IG A SDA+LPSS
Sbjct: 211 SPNADAILKLMRDQIIMAKAYANIAKSQNVTNLYVFLMQQCGENQRVIGKATSDADLPSS 270
Query: 273 ALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPR 332
AL+QA+AMGH LS+AKD+LYDC + +KFRAM+QSTE V LK+K +FLIQLAAK P+
Sbjct: 271 ALDQAKAMGHALSLAKDELYDCHELAKKFRAMLQSTERKVDGLKKKGTFLIQLAAKTFPK 330
Query: 333 PLHCLPLQLAADYYLQGHHK----KEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVA 388
PLHCL LQLAADY++ G ++ KE+ +KFEDPSLYHYAIFSDNVLATSVVVNSTV
Sbjct: 331 PLHCLSLQLAADYFILGFNEQDAVKEDASRKKFEDPSLYHYAIFSDNVLATSVVVNSTVL 390
Query: 389 HAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLES 448
+AKEP+KHVFHIVTDKLNF AMKMWF ++AP ATIQ+ENI+ FKWLNSSYCSVLRQLES
Sbjct: 391 NAKEPQKHVFHIVTDKLNFAAMKMWFRISAPADATIQVENINDFKWLNSSYCSVLRQLES 450
Query: 449 ARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVV 508
ARLKEYYFKANHPSS+SAG+DNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVV
Sbjct: 451 ARLKEYYFKANHPSSISAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVV 510
Query: 509 QKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFD 568
QKDL PLW +D+ G VNGAVETCKESFHRFDKYLNFSNP ISENF +ACGWAFGMNMFD
Sbjct: 511 QKDLAPLWEIDMQGKVNGAVETCKESFHRFDKYLNFSNPKISENFEASACGWAFGMNMFD 570
Query: 569 LKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPAL 628
LKEWRKRNITGIYHYWQD NEDRTLWKLG+LPPGLITFYNLTY ++RSWHVLGLGYDPAL
Sbjct: 571 LKEWRKRNITGIYHYWQDMNEDRTLWKLGSLPPGLITFYNLTYAMERSWHVLGLGYDPAL 630
Query: 629 NLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
N T I+N AVVHYNGN KPWL LA +KYKPYWSKYV
Sbjct: 631 NQTAIENAAVVHYNGNYKPWLGLAFAKYKPYWSKYV 666
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1991 | ||||||
| TAIR|locus:2121753 | 680 | GAUT3 "galacturonosyltransfera | 0.322 | 0.945 | 0.678 | 2.3e-236 | |
| TAIR|locus:2035878 | 1272 | AT1G42470 [Arabidopsis thalian | 0.294 | 0.460 | 0.597 | 4.8e-197 | |
| TAIR|locus:2059687 | 736 | AT2G17210 [Arabidopsis thalian | 0.353 | 0.956 | 0.527 | 5.7e-194 | |
| TAIR|locus:2098836 | 673 | GAUT1 "galacturonosyltransfera | 0.293 | 0.869 | 0.585 | 2e-191 | |
| TAIR|locus:2160957 | 616 | GAUT4 "galacturonosyltransfera | 0.248 | 0.801 | 0.544 | 2e-152 | |
| TAIR|locus:2039934 | 528 | GAUT2 "galacturonosyltransfera | 0.184 | 0.696 | 0.466 | 3.2e-135 | |
| TAIR|locus:2074572 | 561 | GAUT9 "galacturonosyltransfera | 0.191 | 0.679 | 0.558 | 5e-121 | |
| TAIR|locus:2051426 | 536 | GAUT10 "galacturonosyltransfer | 0.220 | 0.820 | 0.498 | 9.5e-120 | |
| TAIR|locus:2027453 | 537 | GAUT11 "galacturonosyltransfer | 0.225 | 0.834 | 0.502 | 1.5e-118 | |
| TAIR|locus:2090210 | 559 | QUA1 "QUASIMODO 1" [Arabidopsi | 0.217 | 0.774 | 0.491 | 4e-115 |
| TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2279 (807.3 bits), Expect = 2.3e-236, P = 2.3e-236
Identities = 446/657 (67%), Positives = 508/657 (77%)
Query: 21 LSLVIV-HITTVNAEVPDVRRLQRELKAHRPLYDKG------DGAARFNNXXXXXXXXXX 73
LSLV+V H V + + + RELKA+RPL D AA +
Sbjct: 11 LSLVVVLHAVHVGGAILESQAPHRELKAYRPLQDNNLQEVYASSAAAVHYDPDLKDVNIV 70
Query: 74 ATYSDVSGAVRISRVKMSHLSASWILENPADGDNGLPNSSQTL--GDSFQAGMNLEENVE 131
ATYSD G +R+ RVKM LS SW+LENPA + SQ + DSFQ +E+N
Sbjct: 71 ATYSDHYGNIRLGRVKMGDLSPSWVLENPAYQVSRKTKGSQLVIPRDSFQNDTGMEDNAS 130
Query: 132 YPMGDHQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQDNENDNIMQETAFE 191
+ + E F SP KLKRQ+LRQ+R RT ELIRQ+ E D MQE A +
Sbjct: 131 HSTTNQTDESENQFPNVDFA-SPAKLKRQILRQERRGQRTLELIRQEKETDEQMQEAAIQ 189
Query: 192 QSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMK 251
+S E V GKYSIWRRD+ESPN D+ LKLMRDQII+AKAYA++AKSKN ++LY LM+
Sbjct: 190 KSMSFENSVIGKYSIWRRDYESPNADAILKLMRDQIIMAKAYANIAKSKNVTNLYVFLMQ 249
Query: 252 HCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGT 311
C E++R IG A SDA+LPSSAL+QA+AMGH LS+AKD+LYDC + +KFRA++QSTE
Sbjct: 250 QCGENKRVIGKATSDADLPSSALDQAKAMGHALSLAKDELYDCHELAKKFRAILQSTERK 309
Query: 312 VTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHK----KEEQINEKFEDPSLY 367
V LK+K +FLIQLAAK P+PLHCL LQLAADY++ G ++ KE+ +K EDPSLY
Sbjct: 310 VDGLKKKGTFLIQLAAKTFPKPLHCLSLQLAADYFILGFNEEDAVKEDVSQKKLEDPSLY 369
Query: 368 HYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIE 427
HYAIFSDNVLATSVVVNSTV +AKEP++HVFHIVTDKLNF AMKMWF +NAP ATIQ+E
Sbjct: 370 HYAIFSDNVLATSVVVNSTVLNAKEPQRHVFHIVTDKLNFGAMKMWFRINAPADATIQVE 429
Query: 428 NIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRF 487
NI+ FKWLNSSYCSVLRQLESARLKEYYFKANHPSS+SAG+DNLKYRNPKYLSMLNHLRF
Sbjct: 430 NINDFKWLNSSYCSVLRQLESARLKEYYFKANHPSSISAGADNLKYRNPKYLSMLNHLRF 489
Query: 488 YLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNP 547
YLPEVYPKLEKILFLDDDIVVQKDL PLW +D+ G VNGAVETCKESFHRFDKYLNFSNP
Sbjct: 490 YLPEVYPKLEKILFLDDDIVVQKDLAPLWEIDMQGKVNGAVETCKESFHRFDKYLNFSNP 549
Query: 548 LISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFY 607
ISENF ACGWAFGMNMFDLKEWRKRNITGIYHYWQD NEDRTLWKLG+LPPGLITFY
Sbjct: 550 KISENFDAGACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPGLITFY 609
Query: 608 NLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
NLTY +DRSWHVLGLGYDPALN T I+N AVVHYNGN KPWL LA +KYKPYWSKYV
Sbjct: 610 NLTYAMDRSWHVLGLGYDPALNQTAIENAAVVHYNGNYKPWLGLAFAKYKPYWSKYV 666
|
|
| TAIR|locus:2035878 AT1G42470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1908 (676.7 bits), Expect = 4.8e-197, P = 4.8e-197
Identities = 354/592 (59%), Positives = 444/592 (75%)
Query: 1404 RHSKEYCAMYDICGERSDGKVLNCPYGSPSVKPDELFSAKIESLCPSISGNVCCTETQFE 1463
+ S YCAMYDICG RSDGKVLNCP+ PSVKPD+L S+KI+SLCP+I+GNVCCTETQF+
Sbjct: 13 KQSAGYCAMYDICGARSDGKVLNCPFNIPSVKPDDLLSSKIQSLCPTITGNVCCTETQFD 72
Query: 1464 TLRAQVQQAIPFLVGCPACLRNFLNLFCELSCSPNQSQFINVTSVSEVNGNLTVDGIDYY 1523
TLR+QVQQAIPF+VGCPACLRNFLNLFCEL+CSP+QS FINVTS ++V N TVDGI YY
Sbjct: 73 TLRSQVQQAIPFIVGCPACLRNFLNLFCELTCSPDQSLFINVTSTTKVKNNSTVDGIQYY 132
Query: 1524 VTSTFGEELYNSCKDVKFGTMNTRAIDFIGAGAKSFKEWFAFIGQKAPPGFPGSPYAINF 1583
+T FG +Y SCK+VKFG+ N+RA+DF+GAGAK+FKEWF FIGQKA PGSPY I F
Sbjct: 133 ITDDFGAGMYESCKNVKFGSSNSRALDFLGAGAKNFKEWFTFIGQKAGVNLPGSPYGIAF 192
Query: 1584 KLSIPESSGLELMNVSTYSCGDTSLGCSCGDCXXXXXXXXXXXXXXXRKEACTIRIGSLK 1643
+ P SSG+ MNVS YSCGD SLGCSCGDC +K +C+I+IGSL+
Sbjct: 193 LPTPPVSSGMRPMNVSIYSCGDESLGCSCGDCPSAATCSSKAEVPTQKKHSCSIKIGSLE 252
Query: 1644 VKCVELSLVIAYVVLISTFFGWALFQRTRERRIPPSSVEPLIKSTSD-SGPDSGIMEEVN 1702
VKCV+ L I Y+VL+S F G L R ++ S + L +++ + + + + +
Sbjct: 253 VKCVDFILAILYIVLVSLFLGGGLLHPVRGKK-KTSQMGTLSEASGERNSVNQQKPDTIQ 311
Query: 1703 ARDLLPT---EGGGLSVVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKV 1759
++ L T G LS VQG++ +FY YG WVA +P VLC+S+++ +LC+G+IRFKV
Sbjct: 312 SQMLQNTPQRNWGQLSTVQGHLANFYGKYGIWVARHPTLVLCLSVSVVLLLCVGLIRFKV 371
Query: 1760 ETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLPDPKNGKQPSIITEDNFQLL 1819
ETRP+KLWVG GSRAA EKQFFD+HLAPFYRIEQLI+AT+ + K P I+T+DN +LL
Sbjct: 372 ETRPDKLWVGSGSRAAEEKQFFDTHLAPFYRIEQLIIATVQTSSHEKAPEILTDDNIKLL 431
Query: 1820 FEMQKKVDGVRANDSASLVSITDICLKPLGEDCASQSVLQ-YFKMDPENYDSYGGIEHAE 1878
F++QKKVDG+RAN S S+VS+TDIC+KPLGEDCA+QSVLQ YFKM PENYD YGG++H +
Sbjct: 432 FDIQKKVDGLRANHSGSMVSLTDICMKPLGEDCATQSVLQQYFKMKPENYDDYGGVDHVK 491
Query: 1879 YCFQHYASSDTCLSAFKAPLDPSTVLGGFSGNNYSEASAFIITYPVNNAIDETSKENRKA 1938
YCF+H+ S+++CLSAFK PLDP+T LGGFSGN++SEASAF++TYPV+N +D + KA
Sbjct: 492 YCFEHFTSTESCLSAFKGPLDPTTALGGFSGNSFSEASAFLVTYPVDNFVDNKGNKTEKA 551
Query: 1939 VAWEKAFIQLAKEELLPMVQXXXXXXXXXXXXXXXXXXXXXXTADVVTIVVS 1990
VAWEKAFIQLAK+ELLPMVQ TADV+TI +S
Sbjct: 552 VAWEKAFIQLAKDELLPMVQAKNLTLSFSSESSIEEELKRESTADVITIAIS 603
|
|
| TAIR|locus:2059687 AT2G17210 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1879 (666.5 bits), Expect = 5.7e-194, P = 5.7e-194
Identities = 378/717 (52%), Positives = 513/717 (71%)
Query: 670 RLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYI-HGRLV 728
+L+ + ++K+ S +GKW+E+ S Y E ++ V NDP V+P+V KAC+ LS++ GR +
Sbjct: 10 KLQALSSKIKQASVSGKWREVVSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGRCI 69
Query: 729 HACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTL 788
A L+K+G+ESF S+GN++ DFYMK S + FD RDSVSWN+++ G LD+G
Sbjct: 70 QASLLKRGFESFVSVGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFE 129
Query: 789 GEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSV 848
EGLWWF K RV GFEPN S LVLVI ACR L +++G ++HGY+IRSG + SVQNS+
Sbjct: 130 EEGLWWFSKLRVWGFEPNTSTLVLVIHACRSL--WFDGEKIHGYVIRSGFCGISSVQNSI 187
Query: 849 LSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDG 908
L MY D+D ARKLFDEM ERDVISWSV+I YVQS E GL+LF++MV K EPD
Sbjct: 188 LCMYADSDSLSARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDC 247
Query: 909 QSLVSVLKACTNLRDLTMGRMVHGLVIYRGLG-CDLFVGNSLIDMYAKCKDTDSAFKVFS 967
++ SVLKACT + D+ +GR VHG I RG D+FV NSLIDMY+K D DSAF+VF
Sbjct: 248 VTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFD 307
Query: 968 EMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPME 1027
E +N VSWNS L+G V N++Y EAL + + M + EVDE+T+V++L++CK F P+
Sbjct: 308 ETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLP 367
Query: 1028 CKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTL 1087
CKS+H VI+RR +ESNE+ L+SLID Y+ C LV+ A + + + DVV STMI+G
Sbjct: 368 CKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAH 427
Query: 1088 CGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLA-EEVA 1146
GR EAI++F M ++ PNAIT+I+LL ACSV+ +L +SKWAHGIAIRR LA +++
Sbjct: 428 AGRSDEAISIFCHM---RDTPNAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDIS 484
Query: 1147 VGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG 1206
VGT++VD YAKCGAIE +R+ FDQI+ KNI+SW+ +++AY +NGL +ALAL EMK G
Sbjct: 485 VGTSIVDAYAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKG 544
Query: 1207 LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ-DHGVEPALEHYSCMVDMLARAGELDI 1265
PNAVT L+ LSAC+HGGLV++GL F SMV+ DH +P+L+HYSC+VDML+RAGE+D
Sbjct: 545 YTPNAVTYLAALSACNHGGLVKKGLMIFKSMVEEDH--KPSLQHYSCIVDMLSRAGEIDT 602
Query: 1266 AIDLINQMPDNLKATASAWGALLSACRS-YGNTELGAGATSRILELEAQNSAGYLLASSM 1324
A++LI +P+++KA ASAWGA+LS CR+ + + + + +LELE S+GYLLASS
Sbjct: 603 AVELIKNLPEDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASST 662
Query: 1325 YAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEK-AQSHPRGSEVI 1380
+AA W + + R L KER V+VVAG S+V N A +F+AG+K +QS ++V+
Sbjct: 663 FAAEKSWEDVAMMRRLVKERKVRVVAGYSMVREGNLAKRFLAGDKLSQSDSELNDVV 719
|
|
| TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1855 (658.1 bits), Expect = 2.0e-191, P = 2.0e-191
Identities = 354/605 (58%), Positives = 449/605 (74%)
Query: 74 ATYSDVSGAVRISRVKMSHLSASWILENPADGDNGLPNSSQTLGDSFQAGMNLEENVEYP 133
AT + G + + K ++LSASW D +S ++ NL E +
Sbjct: 85 ATSTADLGPLSLDSFKKNNLSASW---RGTGVDPSFRHSENPATPDVKSN-NLNEKRDSI 140
Query: 134 MGD--HQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQDNENDNIMQETAFE 191
D HQ E +P K+ R+ LR+KR E+R EL++ +++ ++ A E
Sbjct: 141 SKDSIHQKVE-----------TPTKIHRRQLREKRREMRANELVQHNDDTILKLENAAIE 189
Query: 192 QSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMK 251
+SK ++ V GKYSIWRR+ E+ N+DS ++LMRDQ+I+A+ Y+ +AK KN++ L L
Sbjct: 190 RSKSVDSAVLGKYSIWRRENENDNSDSNIRLMRDQVIMARVYSGIAKLKNKNDLLQELQA 249
Query: 252 HCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGT 311
K+SQR +G+A SDA+LP SA + +AMG VL+ AK QLYDC V K RAM+Q+ +
Sbjct: 250 RLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLYDCKLVTGKLRAMLQTADEQ 309
Query: 312 VTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAI 371
V +LK++S+FL QLAAK +P P+HCL ++L DYYL K++ +E E+P+LYHYA+
Sbjct: 310 VRSLKKQSTFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEKRKFPRSENLENPNLYHYAL 369
Query: 372 FSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDS 431
FSDNVLA SVVVNST+ +AK+P KHVFH+VTDKLNF AM MWFL+N P KATI +EN+D
Sbjct: 370 FSDNVLAASVVVNSTIMNAKDPSKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDE 429
Query: 432 FKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPE 491
FKWLNSSYC VLRQLESA ++EYYFKA+HP+S GS NLKYRNPKYLSMLNHLRFYLPE
Sbjct: 430 FKWLNSSYCPVLRQLESAAMREYYFKADHPTS---GSSNLKYRNPKYLSMLNHLRFYLPE 486
Query: 492 VYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISE 551
VYPKL KILFLDDDI+VQKDLTPLW V+L+G VNGAVETC ESFHRFDKYLNFSNP I+
Sbjct: 487 VYPKLNKILFLDDDIIVQKDLTPLWEVNLNGKVNGAVETCGESFHRFDKYLNFSNPHIAR 546
Query: 552 NFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTY 611
NF+PNACGWA+GMNMFDLKEW+KR+ITGIYH WQ+ NE+RTLWKLGTLPPGLITFY LT+
Sbjct: 547 NFNPNACGWAYGMNMFDLKEWKKRDITGIYHKWQNMNENRTLWKLGTLPPGLITFYGLTH 606
Query: 612 PLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRL 671
PL+++WHVLGLGY+P+++ I+N AVVHYNGN KPWL+LA+SKY+PYW+KY+ L
Sbjct: 607 PLNKAWHVLGLGYNPSIDKKDIENAAVVHYNGNMKPWLELAMSKYRPYWTKYIKFDHPYL 666
Query: 672 RTWNL 676
R NL
Sbjct: 667 RRCNL 671
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| TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
Identities = 274/503 (54%), Positives = 364/503 (72%)
Query: 175 IRQDNENDNIMQETAFEQSKRLEPRVTGKYSIWRRDFESP-NTDSTLKLMRDQIILAKAY 233
I ++N + + Q+T+ + ++ EP G ++D + D+ ++ ++DQ+I AK Y
Sbjct: 120 INRENMHVQLTQQTSEKVDEQPEPNAFGA----KKDTGNVLMPDAQVRHLKDQLIRAKVY 175
Query: 234 AHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYD 293
+ +K + L KE QRA+ DA+ D++LP +A+ + +AM L+ K D
Sbjct: 176 LSLPSAKANAHFVRELRLRIKEVQRALADASKDSDLPKTAIEKLKAMEQTLAKGKQIQDD 235
Query: 294 CPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKK 353
C TV +K RAM+ S + + K+++ FL QL AK +P+ LHCLPL+L DYY ++
Sbjct: 236 CSTVVKKLRAMLHSADEQLRVHKKQTMFLTQLTAKTIPKGLHCLPLRLTTDYYALNSSEQ 295
Query: 354 EEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMW 413
+ EK ED LYHYA+FSDNVLATSVVVNST+ +AK P KHVFHIVTD+LN+ AM+MW
Sbjct: 296 QFPNQEKLEDTQLYHYALFSDNVLATSVVVNSTITNAKHPLKHVFHIVTDRLNYAAMRMW 355
Query: 414 FLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKY 473
FL N P KATIQ++N++ F WLNSSY VL+QL S + +YYF+A+H +S NLK+
Sbjct: 356 FLDNPPGKATIQVQNVEEFTWLNSSYSPVLKQLSSRSMIDYYFRAHHTNS----DTNLKF 411
Query: 474 RNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKE 533
RNPKYLS+LNHLRFYLPE++PKL K+LFLDDDIVVQKDL+ LWSVDL G VNGAVETC E
Sbjct: 412 RNPKYLSILNHLRFYLPEIFPKLSKVLFLDDDIVVQKDLSGLWSVDLKGNVNGAVETCGE 471
Query: 534 SFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTL 593
SFHRFD+YLNFSNPLIS+NF P ACGWA+GMN+FDL EW+++NIT +YH WQD N+DR L
Sbjct: 472 SFHRFDRYLNFSNPLISKNFDPRACGWAYGMNVFDLDEWKRQNITEVYHRWQDLNQDREL 531
Query: 594 WKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAV 653
WKLGTLPPGLITF+ TYPLDR WH+LGLGY+P++N I+ AV+HYNGN KPWL++ +
Sbjct: 532 WKLGTLPPGLITFWRRTYPLDRKWHILGLGYNPSVNQRDIERAAVIHYNGNLKPWLEIGI 591
Query: 654 SKYKPYWSKYVILWSLRLRTWNL 676
+Y+ +WSK+V + LR N+
Sbjct: 592 PRYRGFWSKHVDYEHVYLRECNI 614
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| TAIR|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 884 (316.2 bits), Expect = 3.2e-135, Sum P(2) = 3.2e-135
Identities = 175/375 (46%), Positives = 251/375 (66%)
Query: 153 SPVKLKRQMLRQ-KRMELRTAELIRQDNENDNIMQETAFEQSKRLEPRVTGKYSIWRRDF 211
+P L + LRQ KR+E R EL+ D+ ++ A +S+ ++ G Y+IW+ ++
Sbjct: 31 TPEMLHERSLRQEKRLE-RANELMNDDSLQK--LETAAMARSRSVDSAPLGNYTIWKNEY 87
Query: 212 ESPNT-DSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELP 270
+ + L+LM+DQII+A+ Y+ +AK N +L+ + + + A + ++D +
Sbjct: 88 RRGKSFEDMLRLMQDQIIMARVYSGLAKFTNNLALHQEI--ETQLMKLAWEEESTDIDQE 145
Query: 271 SSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIV 330
L+ + MG +L+ A +QLY+C V K RAM+Q+ E + + +FL QLA+K +
Sbjct: 146 QRVLDSIRDMGQILARAHEQLYECKLVTNKLRAMLQTVEDELENEQTYITFLTQLASKAL 205
Query: 331 PRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHA 390
P +HCL ++L +Y+L + E E+P LYHYA+FSDNVLA SVVVNSTV +A
Sbjct: 206 PDAIHCLTMRLNLEYHLLPLPMRNFPRRENLENPKLYHYALFSDNVLAASVVVNSTVMNA 265
Query: 391 KEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESAR 450
++P +HVFH+VTDKLNF AM MWFL+N P +ATI ++ + F WLNSSY VL QLESA
Sbjct: 266 QDPSRHVFHLVTDKLNFGAMSMWFLLNPPGEATIHVQRFEDFTWLNSSYSPVLSQLESAA 325
Query: 451 LKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQK 510
+K++YFK S+ +GS+NLKYR PKY+SMLNHLRFY+P ++PKLEKILF+DDD+VVQK
Sbjct: 326 MKKFYFKTARSESVESGSENLKYRYPKYMSMLNHLRFYIPRIFPKLEKILFVDDDVVVQK 385
Query: 511 DLTPLWSVDLHGMVN 525
DLTPLWS+DL G VN
Sbjct: 386 DLTPLWSIDLKGKVN 400
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| TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1187 (422.9 bits), Expect = 5.0e-121, Sum P(2) = 5.0e-121
Identities = 214/383 (55%), Positives = 285/383 (74%)
Query: 283 VLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLA 342
++ + + YD +K + I + + +T K+ + ++AK VP+ LHCL ++L
Sbjct: 166 MMIVESKESYDTQLKIQKLKDTIFAVQEQLTKAKKNGAVASLISAKSVPKSLHCLAMRLV 225
Query: 343 ADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVT 402
+ K+ + EDP+LYHYAIFSDNV+A SVVV S V +A+EP KHVFH+VT
Sbjct: 226 GERISNPEKYKDAPPDPAAEDPTLYHYAIFSDNVIAVSVVVRSVVMNAEEPWKHVFHVVT 285
Query: 403 DKLNFVAMKMWFLVNAPPK-ATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHP 461
D++N AMK+WF + + A ++I++++ FK+LNSSY VLRQLESA+L+++YF+ N
Sbjct: 286 DRMNLAAMKVWFKMRPLDRGAHVEIKSVEDFKFLNSSYAPVLRQLESAKLQKFYFE-NQA 344
Query: 462 SSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLH 521
+ + S NLK++NPKYLSMLNHLRFYLPE+YPKL KILFLDDD+VVQKD+T LW ++L
Sbjct: 345 ENATKDSHNLKFKNPKYLSMLNHLRFYLPEMYPKLNKILFLDDDVVVQKDVTGLWKINLD 404
Query: 522 GMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIY 581
G VNGAVETC SFHR+ +YLNFS+PLI ENF+P+AC WAFGMN+FDL WR+ T Y
Sbjct: 405 GKVNGAVETCFGSFHRYGQYLNFSHPLIKENFNPSACAWAFGMNIFDLNAWRREKCTDQY 464
Query: 582 HYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHY 641
HYWQ+ NEDRTLWKLGTLPPGLITFY+ T LD+SWHVLGLGY+P +++ +I N V+HY
Sbjct: 465 HYWQNLNEDRTLWKLGTLPPGLITFYSKTKSLDKSWHVLGLGYNPGVSMDEIRNAGVIHY 524
Query: 642 NGNNKPWLDLAVSKYKPYWSKYV 664
NGN KPWLD+A+++YK W+KYV
Sbjct: 525 NGNMKPWLDIAMNQYKSLWTKYV 547
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| TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1188 (423.3 bits), Expect = 9.5e-120, P = 9.5e-120
Identities = 228/457 (49%), Positives = 316/457 (69%)
Query: 218 STLKLMRDQIILAKAYAHVAK-SKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQ 276
S + + DQI LAKA+ +AK SKN ++ L + SQ + A + P + L
Sbjct: 74 SVARQVNDQIALAKAFVVIAKESKNLQFAWD-LSAQIRNSQLLLSSA-ATRRSPLTVLES 131
Query: 277 AQAMGH--VLSIAKDQL-YDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRP 333
+ VL QL YD T+ + +A IQ+ E ++++ KSS Q+AA+ VP+
Sbjct: 132 ESTIRDMAVLLYQAQQLHYDSATMIMRLKASIQALEEQMSSVSEKSSKYGQIAAEEVPKS 191
Query: 334 LHCLPLQLAADYY----LQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAH 389
L+CL ++L +++ LQ K+ +++ K D SLYH+ +FSDN++ATSVVVNST +
Sbjct: 192 LYCLGVRLTTEWFQNLDLQRTLKERSRVDSKLTDNSLYHFCVFSDNIIATSVVVNSTALN 251
Query: 390 AKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPK--ATIQIENIDSFKWLNSSYCSVLRQLE 447
+K PEK VFH+VT+++N+ AMK WF +N T++++ + F WLN+SY VL+QL+
Sbjct: 252 SKAPEKVVFHLVTNEINYAAMKAWFAINMDNLRGVTVEVQKFEDFSWLNASYVPVLKQLQ 311
Query: 448 SARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIV 507
+ + YYF ++ G +K+RNPKYLSMLNHLRFY+PEV+P L+K++FLDDD+V
Sbjct: 312 DSDTQSYYFSGHNDD----GRTPIKFRNPKYLSMLNHLRFYIPEVFPALKKVVFLDDDVV 367
Query: 508 VQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMF 567
VQKDL+ L+S+DL+ VNGAVETC E+FHR+ KYLN+S+PLI +F P+ACGWAFGMN+F
Sbjct: 368 VQKDLSSLFSIDLNKNVNGAVETCMETFHRYHKYLNYSHPLIRSHFDPDACGWAFGMNVF 427
Query: 568 DLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPA 627
DL EWRKRN+TGIYHYWQ+ N DRTLWKLGTLPPGL+TFY LT L+ SWH+LGLGY
Sbjct: 428 DLVEWRKRNVTGIYHYWQEKNVDRTLWKLGTLPPGLLTFYGLTEALEASWHILGLGYTN- 486
Query: 628 LNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
++ I+ GAV+H+NGN KPWL + + KYKP W +YV
Sbjct: 487 VDARVIEKGAVLHFNGNLKPWLKIGIEKYKPLWERYV 523
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| TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1177 (419.4 bits), Expect = 1.5e-118, P = 1.5e-118
Identities = 231/460 (50%), Positives = 309/460 (67%)
Query: 212 ESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPS 271
E + S + + +Q+ LAKAY +AK N L L + Q + A + P
Sbjct: 70 EVTSASSFSRQLAEQMTLAKAYVFIAKEHNNLHLAWELSSKIRSCQLLLSKAAMRGQ-PI 128
Query: 272 SALNQAQAMGHVLSI----AKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAA 327
S ++A+ + LS A+D YD T ++ IQ+ E A +++ QL A
Sbjct: 129 S-FDEAKPIITGLSALIYKAQDAHYDIATTMMTMKSHIQALEERANAATVQTTIFGQLVA 187
Query: 328 KIVPRPLHCLPLQLAADYYLQG--HHKKEEQINE-KFEDPSLYHYAIFSDNVLATSVVVN 384
+ +P+ LHCL ++L +D+ + H +E N + D +LYH+ IFSDNV+ATSVVVN
Sbjct: 188 EALPKSLHCLTIKLTSDWVTEPSRHELADENRNSPRLVDNNLYHFCIFSDNVIATSVVVN 247
Query: 385 STVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLR 444
STV++A P++ VFHIVT+++++ AM+ WFL N + I+I +++ F WLN+SY V++
Sbjct: 248 STVSNADHPKQLVFHIVTNRVSYKAMQAWFLSNDFKGSAIEIRSVEEFSWLNASYSPVVK 307
Query: 445 QLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDD 504
QL + YYF +S S+ K RNPKYLS+LNHLRFY+PE+YP+LEKI+FLDD
Sbjct: 308 QLLDTDARAYYF--GEQTSQDTISEP-KVRNPKYLSLLNHLRFYIPEIYPQLEKIVFLDD 364
Query: 505 DIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGM 564
D+VVQKDLTPL+S+DLHG VNGAVETC E+FHR+ KYLNFSNPLIS F P ACGWAFGM
Sbjct: 365 DVVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPLISSKFDPQACGWAFGM 424
Query: 565 NMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGY 624
N+FDL WR N+T YHYWQD N +RTLWKLGTLPPGL++FY LT PLDR WHVLGLGY
Sbjct: 425 NVFDLIAWRNANVTARYHYWQDQNRERTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGY 484
Query: 625 DPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
D ++ I+ AV+HYNGN KPWL LA+ +YKP+W K++
Sbjct: 485 DVNIDNRLIETAAVIHYNGNMKPWLKLAIGRYKPFWLKFL 524
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| TAIR|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1145 (408.1 bits), Expect = 4.0e-115, P = 4.0e-115
Identities = 223/454 (49%), Positives = 313/454 (68%)
Query: 221 KLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQA- 279
KL + L + +A + S+N + L N K + RA+ D++ A + S L Q +
Sbjct: 103 KLKLENSKLVRIFADL--SRNYTDLIN------KPTYRALYDSDG-ASIEESVLRQFEKE 153
Query: 280 -------MGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPR 332
V++ AK+ +D +K + I + +T K++ +F +AAK +P+
Sbjct: 154 VKERIKMTRQVIAEAKES-FDNQLKIQKLKDTIFAVNEQLTNAKKQGAFSSLIAAKSIPK 212
Query: 333 PLHCLPLQLAADYYLQGHHKKEEQINE--KFEDPSLYHYAIFSDNVLATSVVVNSTVAHA 390
LHCL ++L + +E + + EDP+LYHYAIFSDNV+A SVVVNS V +A
Sbjct: 213 GLHCLAMRLMEERIAHPEKYTDEGKDRPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNA 272
Query: 391 KEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESAR 450
KEP KHVFH+VTDK+N AM++ F + A ++++ ++ + +LNSSY VL+QLESA
Sbjct: 273 KEPWKHVFHVVTDKMNLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESAN 332
Query: 451 LKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQK 510
L+++YF+ N + + + N+K+RNPKYLS+LNHLRFYLPE+YPKL +ILFLDDD+VVQK
Sbjct: 333 LQKFYFE-NKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQK 391
Query: 511 DLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLK 570
DLT LW +D+ G VNGAVETC SFHR+ +Y+NFS+PLI E F+P AC WA+GMN FDL
Sbjct: 392 DLTGLWEIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLD 451
Query: 571 EWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNL 630
WR+ T YHYWQ+ NE+R LWKLGTLPPGLITFY+ T PLD+SWHVLGLGY+P++++
Sbjct: 452 AWRREKCTEEYHYWQNLNENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISM 511
Query: 631 TQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
+I N AVVH+NGN KPWLD+A+++++P W+K+V
Sbjct: 512 DEIRNAAVVHFNGNMKPWLDIAMNQFRPLWTKHV 545
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00660197 | SubName- Full=Putative uncharacterized protein; (749 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1991 | |||
| PLN02910 | 657 | PLN02910, PLN02910, polygalacturonate 4-alpha-gala | 0.0 | |
| PLN02829 | 639 | PLN02829, PLN02829, Probable galacturonosyltransfe | 0.0 | |
| PLN02742 | 534 | PLN02742, PLN02742, Probable galacturonosyltransfe | 0.0 | |
| TIGR00917 | 1204 | TIGR00917, 2A060601, Niemann-Pick C type protein f | 0.0 | |
| PLN02523 | 559 | PLN02523, PLN02523, galacturonosyltransferase | 1e-175 | |
| PLN02718 | 603 | PLN02718, PLN02718, Probable galacturonosyltransfe | 1e-165 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-125 | |
| cd06429 | 257 | cd06429, GT8_like_1, GT8_like_1 represents a subfa | 1e-118 | |
| PLN02870 | 533 | PLN02870, PLN02870, Probable galacturonosyltransfe | 1e-116 | |
| PLN02769 | 629 | PLN02769, PLN02769, Probable galacturonosyltransfe | 1e-116 | |
| PLN02659 | 534 | PLN02659, PLN02659, Probable galacturonosyltransfe | 1e-104 | |
| PLN02867 | 535 | PLN02867, PLN02867, Probable galacturonosyltransfe | 1e-92 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-87 | |
| pfam01501 | 248 | pfam01501, Glyco_transf_8, Glycosyl transferase fa | 5e-68 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-20 | |
| cd04194 | 248 | cd04194, GT8_A4GalT_like, A4GalT_like proteins cat | 1e-18 | |
| cd00505 | 246 | cd00505, Glyco_transf_8, Members of glycosyltransf | 7e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| COG1442 | 325 | COG1442, RfaJ, Lipopolysaccharide biosynthesis pro | 1e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 |
| >gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase | Back alignment and domain information |
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Score = 1138 bits (2945), Expect = 0.0
Identities = 476/628 (75%), Positives = 531/628 (84%), Gaps = 9/628 (1%)
Query: 45 LKAHRPLYDKG------DGAARFNNDPDIKDIDIIATYSDVSGAVRISRVKMSHLSASWI 98
L A+RPL D AA NDPD KDI+I+ATYSD SG +R+ RVKM LSASW+
Sbjct: 17 LHAYRPLQDNNLDEVYASSAAGVGNDPDEKDINIVATYSDTSGNIRLGRVKMKDLSASWV 76
Query: 99 LENPADGDNGLPNSSQTL--GDSFQAGMNLEENVEYPMGDHQSEEVGFFNRQKPPLSPVK 156
LENPAD + P SQ L SFQ G E+NV + +Q++E G K P SPVK
Sbjct: 77 LENPADKVHDQPKGSQRLEDSSSFQNGTGEEDNVSH-STTNQTDESGIQFPNKLPASPVK 135
Query: 157 LKRQMLRQKRMELRTAELIRQDNENDNIMQETAFEQSKRLEPRVTGKYSIWRRDFESPNT 216
L+RQ+LRQ+R +LRTAELI+QD E D+ Q A E+SK L+ V GKYSIWRRD+ESPN+
Sbjct: 136 LQRQILRQERRDLRTAELIQQDKEADSQTQAAAIERSKSLDTSVKGKYSIWRRDYESPNS 195
Query: 217 DSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQ 276
DS LKLMRDQII+AKAYA++AKS N ++LY SLMK +E++RAIG+A SDAEL SSAL+Q
Sbjct: 196 DSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQ 255
Query: 277 AQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHC 336
A+AMGHVLSIAKDQLYDC T+ RK RAM+QSTE V ALK+KS+FLIQLAAK VP+PLHC
Sbjct: 256 AKAMGHVLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHC 315
Query: 337 LPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKH 396
LPLQLAADY+L G K+ +K EDPSLYHYAIFSDNVLATSVVVNSTV HAKEP+KH
Sbjct: 316 LPLQLAADYFLLGFQNKDYVNKKKLEDPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKH 375
Query: 397 VFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYYF 456
VFHIVTDKLNF AMKMWF++N P KATIQ+ENID FKWLNSSYCSVLRQLESAR+KEYYF
Sbjct: 376 VFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSVLRQLESARIKEYYF 435
Query: 457 KANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLW 516
KANHPSSLSAG+DNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLW
Sbjct: 436 KANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLW 495
Query: 517 SVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRN 576
S+D+ GMVNGAVETCKESFHRFDKYLNFSNP ISENF PNACGWAFGMNMFDLKEWRKRN
Sbjct: 496 SIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRN 555
Query: 577 ITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNG 636
ITGIYHYWQD NEDRTLWKLG+LPPGLITFYNLTYPLDRSWHVLGLGYDPALN T+I+N
Sbjct: 556 ITGIYHYWQDLNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENA 615
Query: 637 AVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
AVVHYNGN KPWLDLA++KYKPYWS+YV
Sbjct: 616 AVVHYNGNYKPWLDLAIAKYKPYWSRYV 643
|
Length = 657 |
| >gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Score = 688 bits (1776), Expect = 0.0
Identities = 296/601 (49%), Positives = 389/601 (64%), Gaps = 39/601 (6%)
Query: 102 PADGD--NGLPNSSQTLGDSFQAGMNLEENVEYPMGDHQSEEVGFFNRQKPPLSPVKLKR 159
D N LP S + L+E + D+ S+ + ++ + K
Sbjct: 50 GGDASKLNVLPQESSSS---------LKEPIGIVYSDNSSKTIEPDSQDLLLDKRGEHKA 100
Query: 160 QMLRQ--KRMELRTAELIRQ----------DNENDNIMQETAFE--------QSKRLEPR 199
++L +T ++I+Q D + N ++A + QS + +
Sbjct: 101 RVLSATDDDTHSQTDDIIKQVTQKAGQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEK 160
Query: 200 VTGKYSI-WRRDFESPNT---DSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKE 255
V K + + D ++ T D+ ++ +RDQ+I AK Y + +K L KE
Sbjct: 161 VDEKEPLLTKTDKQTDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKE 220
Query: 256 SQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTAL 315
QR +GDA+ D++LP +A + +AM L+ K DC V +K RAM+ S E +
Sbjct: 221 VQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRVH 280
Query: 316 KRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDN 375
K+++ FL QL AK +P+ LHCLPL+L +YY +++ EK EDP LYHYA+FSDN
Sbjct: 281 KKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHYALFSDN 340
Query: 376 VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWL 435
VLA +VVVNSTV +AK P KHVFHIVTD+LN+ AM+MWFLVN P KATIQ++NI+ F WL
Sbjct: 341 VLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWL 400
Query: 436 NSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK 495
NSSY VL+QL S + +YYF+A+ +S S NLKYRNPKYLS+LNHLRFYLPE++PK
Sbjct: 401 NSSYSPVLKQLGSQSMIDYYFRAHRANSDS----NLKYRNPKYLSILNHLRFYLPEIFPK 456
Query: 496 LEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSP 555
L K+LFLDDDIVVQKDLT LWS+DL G VNGAVETC ESFHRFD+YLNFSNPLIS+NF P
Sbjct: 457 LNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDP 516
Query: 556 NACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDR 615
+ACGWA+GMN+FDL EW+++NIT +YH WQ N DR LWKLGTLPPGLITF+ TYPLDR
Sbjct: 517 HACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGLITFWKRTYPLDR 576
Query: 616 SWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWN 675
SWHVLGLGY+P +N I+ AV+HYNGN KPWL++ + KY+ YWSKYV + LR N
Sbjct: 577 SWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECN 636
Query: 676 L 676
+
Sbjct: 637 I 637
|
Length = 639 |
| >gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Score = 590 bits (1523), Expect = 0.0
Identities = 231/449 (51%), Positives = 309/449 (68%), Gaps = 17/449 (3%)
Query: 225 DQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQA----- 279
DQI LAKAY +AK N L L + Q + S A + +A
Sbjct: 81 DQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLL----SKAATRGEPITVEEAEPIIR 136
Query: 280 -MGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLP 338
+ ++ A+D YD T +A IQ+ E A +S+ QLAA+ +P+ L+CL
Sbjct: 137 DLAALIYQAQDLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLG 196
Query: 339 LQLAADYY--LQGHHKKEEQINE-KFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEK 395
++L +++ + K EE+ N + D +LYH+ +FSDN+LATSVVVNSTV++AK P++
Sbjct: 197 VRLTTEWFKNPKLQRKAEEKRNSPRLVDNNLYHFCVFSDNILATSVVVNSTVSNAKHPDQ 256
Query: 396 HVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYY 455
VFH+VTD++N+ AM+ WF +N T++++ I+ F WLN+SY VL+QL+ + + YY
Sbjct: 257 LVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQLQDSDTQSYY 316
Query: 456 FKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPL 515
F + + +K+RNPKYLSMLNHLRFY+PE+YP LEK++FLDDD+VVQKDLTPL
Sbjct: 317 FSGSQDDGKTE----IKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPL 372
Query: 516 WSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKR 575
+S+DLHG VNGAVETC E+FHR+ KYLNFS+PLIS +F P+ACGWAFGMN+FDL WRK
Sbjct: 373 FSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKA 432
Query: 576 NITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDN 635
N+T IYHYWQ+ N DRTLWKLGTLPPGL+TFY LT PLDR WHVLGLGYD ++ I++
Sbjct: 433 NVTAIYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHVLGLGYDTNIDPRLIES 492
Query: 636 GAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
AV+H+NGN KPWL LA+ +YKP W +YV
Sbjct: 493 AAVLHFNGNMKPWLKLAIERYKPLWERYV 521
|
Length = 534 |
| >gnl|CDD|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family | Back alignment and domain information |
|---|
Score = 612 bits (1580), Expect = 0.0
Identities = 302/595 (50%), Positives = 394/595 (66%), Gaps = 31/595 (5%)
Query: 1410 CAMYDICGERSDGKVLNCPYGSPSVKPDELFSAKIESLC----PSISGNVCCTETQFETL 1465
C Y ICG RSDGKVLNCPY PS KP + S+ I+SLC P+ISGNVCCTETQF+TL
Sbjct: 1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTL 60
Query: 1466 RAQVQQAIPFLVGCPACLRNFLNLFCELSCSPNQSQFINVTSVSEVNGNLTVDGIDYYVT 1525
R+ VQ AIPFLV CPACLRN LNLFCEL+CSP+QS F+NVTS ++V N TVD + YY+T
Sbjct: 61 RSNVQLAIPFLVRCPACLRNLLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYIT 120
Query: 1526 STFGEELYNSCKDVKFGTMNTRAIDFIGAGAKSFKEWFAFIGQKAPPGFPGSPYAINFKL 1585
F +YNSC +VKF + N+RA+DF+ GA +F W +IGQ A PG+P+ I F
Sbjct: 121 DDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNWIGQMAGVNNPGAPFGITFLP 180
Query: 1586 S-IPESSGLELMNVSTYSCGDTSLGCSCGDCPLSPMCSSSEPPSPPRKEACTIRIGSLKV 1644
+ P SSG+ MNVSTYSCGD LGCSCG CS P P K +C+I +G V
Sbjct: 181 TPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDCSCKAKPPTPPKPSCSIILG---V 237
Query: 1645 KCVELSLVIAYVVLISTFFGWALFQRTRERRIPPSSVEPLIKSTSDSGPDSGIMEEVNAR 1704
++ + I Y+VL+ F G L R + S + SG + N +
Sbjct: 238 DAYDVIMAILYIVLVLVFLGGGLLFPVR-GKKKTSFM-------GTLSEASGEINSSNNQ 289
Query: 1705 DLLPTEG---GGLSVVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVET 1761
T G L+ V+G++ F+ YG WVA NP VLC+S+++ +L +G+I F+VET
Sbjct: 290 SDQNTPQRNEGQLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVET 349
Query: 1762 RPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLPDPKNGKQPSIITEDNFQLLFE 1821
P KLWV PGSRAA EK+FFD+H PFYRIEQLI+A + ++ K P ++ +DN +LLF+
Sbjct: 350 DPVKLWVAPGSRAALEKEFFDTHFGPFYRIEQLIIAAVQTSQHEKFPPVLDDDNLKLLFD 409
Query: 1822 MQKKVDGVRANDSASLVSITDICLKPLGED-CASQSVLQYF-----KMDPENYDSYGGIE 1875
+QKK+ + AN L+++ DIC PL C S YF K+DPENYD G++
Sbjct: 410 IQKKISQLFAN----LITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPENYDDGFGVD 465
Query: 1876 HAEYCFQHYASSDTCLSAFKAPLDPSTVLGGFSGNNYSEASAFIITYPVNNAIDETSKEN 1935
+ +YCF+ + S ++CLSAF P+DP+T LGGFSGNN+SEASAF++T+PVNN +++T K
Sbjct: 466 YVKYCFECFTSPESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNKTDKLE 525
Query: 1936 RKAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTIVVS 1990
+ AVAWEKAFIQ AK LLP VQ+ L +SFSSE S+E+ELKRESTADV+TI+VS
Sbjct: 526 K-AVAWEKAFIQFAKNYLLPNVQAK-LDISFSSERSIEDELKRESTADVITILVS 578
|
The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204 |
| >gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase | Back alignment and domain information |
|---|
Score = 545 bits (1405), Expect = e-175
Identities = 232/470 (49%), Positives = 316/470 (67%), Gaps = 21/470 (4%)
Query: 214 PNTDSTLKLMRDQIILAKAYAHVA-KSKNESS----LYNSLMKH-----CKESQRAIGDA 263
D K D L AYA A K K ++S L+ L ++ K S RA+ +
Sbjct: 78 TRLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSS 137
Query: 264 NSDA-------ELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALK 316
+ A + + + +++ +K + +D +K + I + +T K
Sbjct: 138 DGSAIDEDVLRQFEKEVKERVKVARQMIAESK-ESFDNQLKIQKLKDTIFAVNEQLTKAK 196
Query: 317 RKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEE--QINEKFEDPSLYHYAIFSD 374
+ +F +AAK +P+ LHCL ++L + K+E + EDPSLYHYAIFSD
Sbjct: 197 KNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEGKPPPPELEDPSLYHYAIFSD 256
Query: 375 NVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKW 434
NV+A SVVVNS V +AKEP KHVFH+VTD++N AMK+ F + A ++++ ++ +K+
Sbjct: 257 NVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKF 316
Query: 435 LNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYP 494
LNSSY VLRQLESA L+++YF+ N + + S N+K+RNPKYLSMLNHLRFYLPE+YP
Sbjct: 317 LNSSYVPVLRQLESANLQKFYFE-NKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYP 375
Query: 495 KLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFS 554
KL +ILFLDDD+VVQKDLT LW +D+ G VNGAVETC SFHR+ +YLNFS+PLI E F+
Sbjct: 376 KLHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFN 435
Query: 555 PNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLD 614
P AC WA+GMN+FDL WR+ T YHYWQ+ NE+RTLWKLGTLPPGLITFY+ T PLD
Sbjct: 436 PKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLD 495
Query: 615 RSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
+SWHVLGLGY+P++++ +I N AV+H+NGN KPWLD+A++++KP W+KYV
Sbjct: 496 KSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYV 545
|
Length = 559 |
| >gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Score = 518 bits (1335), Expect = e-165
Identities = 209/452 (46%), Positives = 290/452 (64%), Gaps = 28/452 (6%)
Query: 216 TDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALN 275
TD +K +RD+II AKAY ++A + S L L KE +RA+GDA D +L SAL
Sbjct: 163 TDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQ 222
Query: 276 QAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLH 335
+ ++M L A +CP + K RAM +TE V A K ++++L+QLAA+ P+ LH
Sbjct: 223 RMKSMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLH 282
Query: 336 CLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEK 395
CL ++L A+Y+ K++ +++ DP LYHY +FSDNVLA SVVVNST++ +KEPEK
Sbjct: 283 CLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVFSDNVLACSVVVNSTISSSKEPEK 342
Query: 396 HVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEYY 455
VFH+VTD LN+ A+ MWFL+N P KATIQI NID L + Y S+L + S
Sbjct: 343 IVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNS------- 395
Query: 456 FKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPL 515
+P+Y+S LNH RFYLP+++P L KI+ D D+VVQ+DL+ L
Sbjct: 396 ------------------HDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRL 437
Query: 516 WSVDLHGMVNGAVETCKE---SFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEW 572
WS+D+ G V GAVETC E SF D ++NFS+P +++ F P AC WAFGMN+FDL+EW
Sbjct: 438 WSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEW 497
Query: 573 RKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQ 632
R++ +T +YH + R LWK G+LP G +TFYN T LD+ WHVLGLG++ + +
Sbjct: 498 RRQKLTSVYHKYLQLGVKRPLWKAGSLPIGWLTFYNQTVALDKRWHVLGLGHESGVGASD 557
Query: 633 IDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
I+ AV+HY+G KPWLD+ + KYK YW+ +V
Sbjct: 558 IEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHV 589
|
Length = 603 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 417 bits (1074), Expect = e-125
Identities = 228/709 (32%), Positives = 369/709 (52%), Gaps = 14/709 (1%)
Query: 675 NLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSN-LSYIHGRLVHACLV 733
N +++ L +G+ ++ +++ V + D Y + + C + G V + +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPV-DEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 734 KQGYESFTSIGNALMDFYMKWRFPD--SAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEG 791
+GNA++ ++ RF + A VF RD SWN+++ G+ G E
Sbjct: 114 SSHPSLGVRLGNAMLSMFV--RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 792 LWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSM 851
L +++ AG P+ V++ C + G +VH +++R G V N++++M
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 852 YVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQS 910
YV D+ AR +FD M RD ISW+ MI GY ++ E GL LF M +PD +
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMT 290
Query: 911 LVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMP 970
+ SV+ AC L D +GR +HG V+ G D+ V NSLI MY A KVFS M
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350
Query: 971 QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKS 1030
K+ VSW + +SG N +AL M + DEIT+ ++L C C
Sbjct: 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK 410
Query: 1031 VHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGR 1090
+H + R+ S +V N+LI+ YSKC ++ A ++F+++ + DV+ W+++IAG L R
Sbjct: 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR 470
Query: 1091 PREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTA 1150
EA+ F++M KPN++T+I L AC+ L K H +R + + + A
Sbjct: 471 CFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529
Query: 1151 VVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN 1210
++D+Y +CG + + F+ K++VSW+ ++ Y +G A+ L M G+ P+
Sbjct: 530 LLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLI 1270
VT +S+L ACS G+V +GL +F+SM + + + P L+HY+C+VD+L RAG+L A + I
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 1271 NQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330
N+MP + + WGALL+ACR + + ELG A I EL+ + Y+L ++YA G
Sbjct: 649 NKMP--ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706
Query: 1331 WVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEV 1379
W E + R +E G+ V G S V V K F+ ++ SHP+ E+
Sbjct: 707 WDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDE--SHPQIKEI 753
|
Length = 857 |
| >gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
|---|
Score = 372 bits (957), Expect = e-118
Identities = 139/301 (46%), Positives = 177/301 (58%), Gaps = 46/301 (15%)
Query: 367 YHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQI 426
H IFSDN LA +VV+NS++++ K+P VFHIVTD N+ AM+ WF +N AT+++
Sbjct: 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKV 60
Query: 427 ENIDSFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLR 486
N D FK L L QLES A + NLK R P+Y+S+LN R
Sbjct: 61 LNFDDFKLLGKVKVDSLMQLESE----------------ADTSNLKQRKPEYISLLNFAR 104
Query: 487 FYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSN 546
FYLPE++PKLEK+++LDDD+VVQKDLT LW+ DL G V GAVET
Sbjct: 105 FYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET---------------- 148
Query: 547 PLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDAN--EDRTLWKLGTLPPGLI 604
W G+N+ +L EWR++N+T Y W + N E+ TLWKL TLPPGLI
Sbjct: 149 ------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLI 196
Query: 605 TFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
FY LT PLD SWHV GLGY+ + I AV+H+NGN KPWL A+ YK W KY+
Sbjct: 197 VFYGLTSPLDPSWHVRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYL 256
Query: 665 I 665
Sbjct: 257 S 257
|
A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. Length = 257 |
| >gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Score = 380 bits (976), Expect = e-116
Identities = 172/421 (40%), Positives = 250/421 (59%), Gaps = 26/421 (6%)
Query: 265 SDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQ 324
+ E+P L + ++S K+ YD T RAM++ E + R+S F
Sbjct: 103 NTEEIPDG-LKLPDSFSQLVSDMKNNHYDAKTFAFVLRAMMEKFEREL----RESKFAEL 157
Query: 325 L----AAKIVPRPLHCLPLQLAADYYLQGHHKKE---EQINEKFEDPSLYHYAIFSDNVL 377
+ AA +P+ +HCL L+L +Y H +K+ ++ D S +H+ + +DN+L
Sbjct: 158 MNKHFAASSIPKGIHCLSLRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNIL 217
Query: 378 ATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNS 437
A SVVV+STV + +PEK VFH++TDK + M WF +N+ A ++++ + F WL
Sbjct: 218 AASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFALNSVSPAIVEVKGVHQFDWLTR 277
Query: 438 SYCSVLRQLESARLKEYYFKANHPSSLSAG-------SDNLKYRNPKYLSMLNHLRFYLP 490
VL +ES Y+ NH + + + L+ R+PKY+S+LNHLR YLP
Sbjct: 278 ENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIYLP 337
Query: 491 EVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKES-----FHRFDKYLNFS 545
E++P L+K++FLDDD+V+Q+DL+PLW +DL G VNGAVETC+ RF Y NFS
Sbjct: 338 ELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFS 397
Query: 546 NPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDAN--EDRTLWKLGTLPPGL 603
+PLI++N P C WA+GMN+FDL+ WRK NI YH W N + T+WKLGTLPP L
Sbjct: 398 HPLIAKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPAL 457
Query: 604 ITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKY 663
I F +P+D SWH+LGLGY N+ + AV+HYNG +KPWL++ +P+W+KY
Sbjct: 458 IAFKGHVHPIDPSWHMLGLGYQSKTNIESVKKAAVIHYNGQSKPWLEIGFEHLRPFWTKY 517
Query: 664 V 664
V
Sbjct: 518 V 518
|
Length = 533 |
| >gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Score = 382 bits (984), Expect = e-116
Identities = 181/530 (34%), Positives = 281/530 (53%), Gaps = 24/530 (4%)
Query: 138 QSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQDNENDNIMQETAFEQSKRLE 197
+S+ F P L+P+ +K + + + + E K E
Sbjct: 106 RSKLKKVF--PDPKLNPLPVKPHSVPVPSSDTKNKSTAIDKENKGQ--KADEDENEKSCE 161
Query: 198 PRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKA-YAHVAKSKNESSLYNSLMKHCKES 256
G Y +W + + DS +K ++DQ+ +A+A Y +AK + L L ++ +E
Sbjct: 162 LEF-GSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEH 220
Query: 257 QRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALK 316
+R + ++ +DA+LP + + M ++ AK DC V RK R ++ TE
Sbjct: 221 ERVLSESITDADLPPFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHM 280
Query: 317 RKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIFSDNV 376
++S+FL QL + +P+ HCL ++L +Y+ E+ +EKF DPSL HY IFS NV
Sbjct: 281 KQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSSLDMEDSNSEKFSDPSLRHYVIFSKNV 340
Query: 377 LATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLN 436
LA SVV+NSTV H++E VFH++TD N+ AMK WF N+ +A +Q+ NI+ L
Sbjct: 341 LAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIEDLI-LK 399
Query: 437 SSYCSVLRQLE-SARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK 495
L+QL + + ++PSS K +YLS+ +H F LPE++ K
Sbjct: 400 DLDKFALKQLSLPEEFRVSFRSVDNPSS--------KQMRTEYLSVFSHSHFLLPEIFKK 451
Query: 496 LEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSP 555
L+K++ LDDD+VVQ+DL+ LW++D+ G VNGAV+ C + YL NF
Sbjct: 452 LKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLG------DTNFDT 505
Query: 556 NACGWAFGMNMFDLKEWRKRNITGIY-HYWQD-ANEDRTLWKLGTLPPGLITFYNLTYPL 613
N+C W G+N+ DL +WR+ ++T Y Q + + + LP L+TF +L YPL
Sbjct: 506 NSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPASLLTFQDLIYPL 565
Query: 614 DRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKY 663
D W + GLG+D ++ I AV+HYNGN KPWL+L + KYK YW ++
Sbjct: 566 DDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRF 615
|
Length = 629 |
| >gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Score = 343 bits (882), Expect = e-104
Identities = 157/404 (38%), Positives = 236/404 (58%), Gaps = 17/404 (4%)
Query: 278 QAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCL 337
Q + + K+ D K R M+ E K + +A+ +P+ LHCL
Sbjct: 116 QTLEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCL 175
Query: 338 PLQLAADYYLQGHHKKEEQINE---KFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPE 394
L+LA ++ + + + E D S +H+ + SDN+LA SVV NS V +A P
Sbjct: 176 ALRLANEHSTNAAARLQLPLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPH 235
Query: 395 KHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLKEY 454
K V HI+TD+ + M+ WF ++ A I+++ + F W VL +E +
Sbjct: 236 KFVLHIITDRKTYSPMQAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDQRVRS 295
Query: 455 YFKANHPSSLSAGSDN-------LKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIV 507
F+ + ++ ++ L+ +PKY S++NH+R +LPE++P L K++FLDDDIV
Sbjct: 296 QFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIV 355
Query: 508 VQKDLTPLWSVDLHGMVNGAVETCK--ESF---HRFDKYLNFSNPLISENFSPNACGWAF 562
VQ DL+PLW +D++G VNGAVETC+ + F + YLNFS+PLI++NF PN C WA+
Sbjct: 356 VQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAY 415
Query: 563 GMNMFDLKEWRKRNITGIYHYWQDAN--EDRTLWKLGTLPPGLITFYNLTYPLDRSWHVL 620
GMN+FDL+ WRK NI+ YH+W + N D +LW+LGTLPPGLI F+ + +D WH+L
Sbjct: 416 GMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGTLPPGLIAFHGHVHVIDPFWHML 475
Query: 621 GLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
GLGY +L ++ VVH+NG KPWLD+A + +P W+KY+
Sbjct: 476 GLGYQENTSLADAESAGVVHFNGRAKPWLDIAFPQLRPLWAKYI 519
|
Length = 534 |
| >gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Score = 311 bits (798), Expect = 1e-92
Identities = 155/396 (39%), Positives = 221/396 (55%), Gaps = 33/396 (8%)
Query: 293 DCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYL----Q 348
D + +AM+ E V + +++ S LA+ +P+ LHCL L+LA +Y + +
Sbjct: 135 DIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKSLHCLCLKLAEEYAVNAMAR 194
Query: 349 GHHKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFV 408
E ++ + DPS +H + +DNVLA SVV++STV +A PEK VFHIVTDK +
Sbjct: 195 SRLPPPESVS-RLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYT 253
Query: 409 AMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARL--KEYY---------FK 457
M WF +N+ A ++++ + + W V LE RL YY F+
Sbjct: 254 PMHAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFE 313
Query: 458 ANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWS 517
H SL A +P LS+LNHLR Y+PE++P L KI+FLDDD+VVQ DL+ LW
Sbjct: 314 GTHKRSLEA-------LSPSCLSLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWE 366
Query: 518 VDLHGMVNGAV------ETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKE 571
+DL+G V GAV + C ++ YLNFS+PLIS N C W +GMN+FDLK
Sbjct: 367 LDLNGKVVGAVVDSWCGDNCCPG-RKYKDYLNFSHPLISSNLDQERCAWLYGMNVFDLKA 425
Query: 572 WRKRNITGIYHYW--QDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALN 629
WR+ NIT YH W N LW+ G LPP L+ F +P+D SWHV GLG P
Sbjct: 426 WRRTNITEAYHKWLKLSLNSGLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEV 485
Query: 630 LTQI-DNGAVVHYNGNNKPWLDLAVSKYKPYWSKYV 664
+I ++ AV+H++G KPWL++ + + W ++V
Sbjct: 486 PREILESAAVLHFSGPAKPWLEIGFPEVRSLWYRHV 521
|
Length = 535 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 302 bits (774), Expect = 1e-87
Identities = 158/540 (29%), Positives = 272/540 (50%), Gaps = 20/540 (3%)
Query: 856 DMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVL 915
D RK +C + I V G + ++ E F L G + +++
Sbjct: 79 DDTQIRKSGVSLCSQ--IEKLVACGRHREALELFEILEA------GCPFTLPASTYDALV 130
Query: 916 KACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKV 975
+AC L+ + + V+ V G D ++ N ++ M+ KC A ++F EMP++N
Sbjct: 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLA 190
Query: 976 SWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVI 1035
SW + + GLV Y EA +L M + ++ + T V +L+ + +HC +
Sbjct: 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250
Query: 1036 LRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAI 1095
L+ + V +LID YSKC +E A +F+ + + V W++M+AG+ L G EA+
Sbjct: 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL 310
Query: 1096 AVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMY 1155
++ EM + + T ++ S L +K AH IR ++ TA+VD+Y
Sbjct: 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370
Query: 1156 AKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTL 1215
+K G +E +R FD++ RKN++SW+A++A YG +G +A+ + M G+ PN VT L
Sbjct: 371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430
Query: 1216 SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPD 1275
+VLSAC + GL E+G F SM ++H ++P HY+CM+++L R G LD A +I + P
Sbjct: 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP- 489
Query: 1276 NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335
K T + W ALL+ACR + N ELG A ++ + + Y++ ++Y + G E++
Sbjct: 490 -FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548
Query: 1336 GTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLACLVTAEKTDTLL 1395
K +G+ + + + V + F +G++ HP+ E+ +K D L+
Sbjct: 549 KVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRL--HPQSREIY--------QKLDELM 598
|
Length = 697 |
| >gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 5e-68
Identities = 90/285 (31%), Positives = 123/285 (43%), Gaps = 46/285 (16%)
Query: 372 FSDN-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENID 430
DN VL V++ S + H +P +FHI+TD + EN +
Sbjct: 6 LDDNYVLGAGVLIKSLLLHNSDPLHLLFHILTD-------------------DVSEENRE 46
Query: 431 SFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLP 490
L S V S Y L+ KY S+LN+ R YL
Sbjct: 47 KLNALGSQVSEVDVLEFSDIEMLSYLT-------------LQLLLKKYWSLLNYARLYLA 93
Query: 491 EVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLIS 550
+++PK +KIL+LD DI+V DL L+ +DL G V AVE D+Y F L +
Sbjct: 94 DLFPKYDKILYLDADIIVLGDLDELFDIDLGGKVAAAVEDF-------DRYPWFKEALSA 146
Query: 551 ENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLT 610
E P C + G+ + +LK+WR+ N+T W + N L KLG I F
Sbjct: 147 ELGIPPPCYFNAGVLVINLKKWREENLTEKLIEWLNKNGG--LLKLGDQDILNIVFKGKV 204
Query: 611 YPLDRSWHVLGLGYD---PALNLTQIDNGAVVHYNGNNKPWLDLA 652
PL ++V GLGY L +N V+HY G KPW DLA
Sbjct: 205 KPLPPRYNVHGLGYYSYKKRRKLIP-ENPKVIHYIGPTKPWHDLA 248
|
This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. Length = 248 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-26
Identities = 106/436 (24%), Positives = 188/436 (43%), Gaps = 50/436 (11%)
Query: 706 DPSVYPLVVKACSNLSYIHG-RLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVF 764
S Y +V+AC L I + V+ + G+E + N ++ ++K A +F
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 765 DDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYY 824
D+ R+ SW +I G +D G E F + G + V++++A LG+
Sbjct: 182 DEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241
Query: 825 EGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYV 883
G Q+H ++++G+ V +++ MY D+E AR +FD M E+ ++W+ M+ GY
Sbjct: 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA 301
Query: 884 QSAEAFSGLRLFRQMV-SGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCD 942
+ L L+ +M SG D + +++ + L L + H +I G D
Sbjct: 302 LHGYSEEALCLYYEMRDSGVS--IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359
Query: 943 LFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSM-G 1001
+ +L+D+Y+K + A VF MP+KN +SWN+ ++G + + ++A+ + M
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419
Query: 1002 KGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVE 1061
+GV + +T + +L C+ YS L E
Sbjct: 420 EGVAP-NHVTFLAVLSACR---------------------------------YSG--LSE 443
Query: 1062 LAWKLF-----NDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINL 1116
W++F N KP + ++ MI G EA A+ + +A KP L
Sbjct: 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR---RAPFKPTVNMWAAL 500
Query: 1117 LEACSVATELSSSKWA 1132
L AC + L + A
Sbjct: 501 LTACRIHKNLELGRLA 516
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 3e-20
Identities = 70/254 (27%), Positives = 120/254 (47%), Gaps = 16/254 (6%)
Query: 673 TWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVV--KACSNLSYIH-GRLVH 729
+W + L G ++E F+ + +++ D +D VV +A + L G+ +H
Sbjct: 191 SWGTIIGGLVDAGNYREAFALF---REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247
Query: 730 ACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLG 789
C++K G T + AL+D Y K + A VFD + +V+WN M+ G+ HG
Sbjct: 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE 307
Query: 790 EGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVL 849
E L +Y+ R +G + ++I+ L Q H +IR+G + V N+ L
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTAL 366
Query: 850 SMYVD-----ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKN 904
VD ME AR +FD M +++ISW+ +I GY + +F +M++
Sbjct: 367 ---VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE-GV 422
Query: 905 EPDGQSLVSVLKAC 918
P+ + ++VL AC
Sbjct: 423 APNHVTFLAVLSAC 436
|
Length = 697 |
| >gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 1e-18
Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%)
Query: 485 LRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNF 544
R +P++ P +K+L+LD DI+V DL+ L+ +DL + AV +
Sbjct: 85 YRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPF-IEQEKKRKRRL 143
Query: 545 SNPLISENFSPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDANEDRTLWKLGTLPPGL 603
F N+ G+ + +LK+WR+ NIT + ++ L
Sbjct: 144 GGYDDGSYF--NS-----GVLLINLKKWREENITEKLLELIKEYGGRLIYPDQDILN--- 193
Query: 604 ITFYNLTYPLDRSWHVLGLGYDPALNLTQ---------IDNGAVVHYNGNNKPWLD 650
+ L ++ G+ L N ++HY G++KPW
Sbjct: 194 AVLKDKILYLPPRYNFQ-TGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWNK 248
|
The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS. Length = 248 |
| >gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 7e-15
Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 26/201 (12%)
Query: 464 LSAGSDNLKYRNP----------KYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLT 513
L + L + + + ++ + +LP + P +KIL++D DI+V D+
Sbjct: 54 LYNFNYELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDID 113
Query: 514 PLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWR 573
LW L G A + R KY ++ + G+ + +L + R
Sbjct: 114 ELWDTPLGGQELAAAPDPGDR--REGKYYRQKRSHLAGP-----DYFNSGVFVVNLSKER 166
Query: 574 KRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYN----LTYPLDRSWHVLGLGYDPALN 629
+ + + + L TF+ + L W+V G +LN
Sbjct: 167 RNQLLKVALEKWLQSLSSLSG---GDQDLLNTFFKQVPFIVKSLPCIWNVRLTGCYRSLN 223
Query: 630 LTQ--IDNGAVVHYNGNNKPW 648
+ + N V+H+NG KPW
Sbjct: 224 CFKAFVKNAKVIHFNGPTKPW 244
|
Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. Length = 246 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 2e-13
Identities = 46/173 (26%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 674 WNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYI-HGRLVHACL 732
WN + + +G +E Y+E + V + D + ++++ S L+ + H + HA L
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 733 VKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGL 792
++ G+ AL+D Y KW + A VFD ++ +SWN +I G+ +HG + +
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411
Query: 793 WWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQ 845
F + G PN+ + V+ ACR Y GL G+ I + H ++
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACR-----YSGLSEQGWEIFQSMSENHRIK 459
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-11
Identities = 57/272 (20%), Positives = 123/272 (45%), Gaps = 14/272 (5%)
Query: 1041 ESNELVLNSLIDGYSKCHLVELAWKLF-----NDVKKPDVVLWSTMIAGFTLCGRPREAI 1095
E+N +LIDG ++ V A+ + +VK PD V+++ +I+ G A
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAF 562
Query: 1096 AVFQEMNQAQE--KPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153
V EM P+ IT+ L++AC+ A ++ +K + + + V T V+
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 1154 MYAKCGAIEASRKAFDQISRKNI----VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP 1209
++ G + + +D + +K + V +SA+V G G +A ++ + + G++
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDL 1269
V+ S++ ACS+ ++ L + ++ + P + + ++ L +L A+++
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYED-IKSIKLRPTVSTMNALITALCEGNQLPKALEV 741
Query: 1270 INQMPD-NLKATASAWGALLSACRSYGNTELG 1300
+++M L + LL A + ++G
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 46/244 (18%), Positives = 90/244 (36%), Gaps = 36/244 (14%)
Query: 486 RFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFS 545
R++L +++P+ +K+L+LD D++ DL+ L+ +DL AV D + ++
Sbjct: 88 RYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVR---------DVFSHYM 138
Query: 546 NPLISENFSPNACGWAF--GMNMFDLKEWRKRNITG----IYHYWQD--ANEDRTLWKLG 597
+ G F G+ + +LK WR+ NI + ++ D+ + L
Sbjct: 139 KEGALRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKENDLLYPDQDI--LN 196
Query: 598 TLPPGLITFYNLTYPLDRSW--HVLGLGY--DPALNLTQIDNGAVVHYNGNNKPWLDLAV 653
+ F + L + D + D+ ++HY G KPW +
Sbjct: 197 MI------FEDRVLELPIRYNAIPYIDSQLKDKYIYPFG-DDPVILHYAGPTKPWHSDSS 249
Query: 654 SKY-KPYWSKYVILWSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPL 712
+ W + + N + K + F H K + + +Y
Sbjct: 250 NYPRSHEWHEILAETPW----KNDFKLKALKK-FIKYRFEIKHLEKNALFRFFNKHIYSG 304
Query: 713 VVKA 716
V+K
Sbjct: 305 VIKT 308
|
Length = 325 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 8e-10
Identities = 74/352 (21%), Positives = 157/352 (44%), Gaps = 39/352 (11%)
Query: 970 PQKNKVSWNSALSGLVVNEKYSEALSLLYSMGK-GVNEVDEITLVNILQICKCFVHPMEC 1028
++ + A + L+ + + + + LL M K G+ ++D+I + CK +
Sbjct: 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACK------KQ 419
Query: 1029 KSVHCVILRRAFESNELVLNSLIDGYSK-----CHL--VELAWKLFNDVK----KPDVVL 1077
++V + AF +L+ N + ++ ++ A ++ V+ K D L
Sbjct: 420 RAV-----KEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKL 474
Query: 1078 WSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAI 1137
++T+I+ G+ VF EM A + N T L++ C+ A +++ + A+GI
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534
Query: 1138 RRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS---------RKNIVSWSAMVAAYGM 1188
+ + + V A++ + CG A +AFD ++ + ++ A++ A
Sbjct: 535 SKNVKPDRVVFNALI---SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 1189 NGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPAL 1247
G A + + ++ V T++V ++CS G + LS ++ M + GV+P
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAV-NSCSQKGDWDFALSIYDDMKKK-GVKPDE 649
Query: 1248 EHYSCMVDMLARAGELDIAIDLINQM-PDNLKATASAWGALLSACRSYGNTE 1298
+S +VD+ AG+LD A +++ +K ++ +L+ AC + N +
Sbjct: 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 2e-06
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 1048 NSLIDGYSKCHLVELAWKLFNDVKK----PDVVLWSTMIAGF 1085
N+LIDGY K VE A KLFN++KK P+V +S +I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 3e-06
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 1174 KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH 1223
++V+++ ++ Y G EAL L EMK G++PN T ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 9e-06
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 1073 PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAIT 1112
PDVV ++T+I G+ G+ EA+ +F EM + KPN T
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-04
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 947 NSLIDMYAKCKDTDSAFKVFSEMPQK----NKVSWNSALSGL 984
N+LID Y K + A K+F+EM ++ N +++ + GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 5e-04
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1072 KPDVVLWSTMIAGFTLCGRPREAIAVFQEM 1101
KPDVV ++T+I G GR EA+ + EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 0.002
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 846 NSVLSMYVDA-DMECARKLFDEMCER----DVISWSVMIGGY 882
N+++ Y +E A KLF+EM +R +V ++S++I G
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.003
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 1076 VLWSTMIAGFTLCGRPREAIAVFQEM 1101
V ++++I+G+ G+ EA+ +F+EM
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.004
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 1209 PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR 1259
P+ VT +++ G VEE L FN M + G++P + YS ++D L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1991 | |||
| PLN02910 | 657 | polygalacturonate 4-alpha-galacturonosyltransferas | 100.0 | |
| PLN02829 | 639 | Probable galacturonosyltransferase | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN02769 | 629 | Probable galacturonosyltransferase | 100.0 | |
| PLN02742 | 534 | Probable galacturonosyltransferase | 100.0 | |
| TIGR00917 | 1204 | 2A060601 Niemann-Pick C type protein family. The m | 100.0 | |
| PLN02718 | 603 | Probable galacturonosyltransferase | 100.0 | |
| PLN02523 | 559 | galacturonosyltransferase | 100.0 | |
| PLN02870 | 533 | Probable galacturonosyltransferase | 100.0 | |
| PLN02867 | 535 | Probable galacturonosyltransferase | 100.0 | |
| PLN02659 | 534 | Probable galacturonosyltransferase | 100.0 | |
| KOG1933 | 1201 | consensus Cholesterol transport protein (Niemann-P | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| cd06429 | 257 | GT8_like_1 GT8_like_1 represents a subfamily of GT | 100.0 | |
| TIGR00918 | 1145 | 2A060602 The Eukaryotic (Putative) Sterol Transpor | 100.0 | |
| PRK15171 | 334 | lipopolysaccharide 1,3-galactosyltransferase; Prov | 100.0 | |
| cd06431 | 280 | GT8_LARGE_C LARGE catalytic domain has closest hom | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| COG1442 | 325 | RfaJ Lipopolysaccharide biosynthesis proteins, LPS | 100.0 | |
| cd00505 | 246 | Glyco_transf_8 Members of glycosyltransferase fami | 99.98 | |
| cd04194 | 248 | GT8_A4GalT_like A4GalT_like proteins catalyze the | 99.97 | |
| cd06430 | 304 | GT8_like_2 GT8_like_2 represents a subfamily of GT | 99.97 | |
| PF01501 | 250 | Glyco_transf_8: Glycosyl transferase family 8; Int | 99.95 | |
| cd06432 | 248 | GT8_HUGT1_C_like The C-terminal domain of HUGT1-li | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.9 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| KOG1934 | 868 | consensus Predicted membrane protein (patched supe | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.83 | |
| cd02537 | 240 | GT8_Glycogenin Glycogenin belongs the GT 8 family | 99.83 | |
| PLN00176 | 333 | galactinol synthase | 99.8 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.72 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.66 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.65 | |
| PF02460 | 798 | Patched: Patched family; InterPro: IPR003392 The t | 99.65 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.62 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.61 | |
| cd06914 | 278 | GT8_GNT1 GNT1 is a fungal enzyme that belongs to t | 99.61 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.59 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.58 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.57 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.56 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.56 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.55 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.53 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.53 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.52 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.5 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.46 | |
| KOG1879 | 1470 | consensus UDP-glucose:glycoprotein glucosyltransfe | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.41 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.39 | |
| KOG1935 | 1143 | consensus Membrane protein Patched/PTCH [Signal tr | 99.38 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.35 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.28 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.19 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.08 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.06 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.02 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.02 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.01 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.99 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.99 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.99 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.98 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.95 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.92 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.91 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.91 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.9 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.81 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.81 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.79 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 98.77 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.74 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.74 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.74 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.69 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.66 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.63 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.62 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.62 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.61 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.55 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.54 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.44 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.39 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.31 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.3 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.3 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.26 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.25 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.24 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.22 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.16 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.16 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.12 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.11 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.04 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.04 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.03 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.02 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.02 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.97 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.88 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.84 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.78 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.77 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.77 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.75 | |
| PF12854 | 34 | PPR_1: PPR repeat | 97.7 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.7 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.7 | |
| PF12854 | 34 | PPR_1: PPR repeat | 97.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.53 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.53 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.5 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.48 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.36 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.34 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.3 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.29 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.28 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.25 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.24 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.23 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.21 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.06 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 96.97 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.84 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.78 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.75 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.63 | |
| TIGR00921 | 719 | 2A067 The (Largely Archaeal Putative) Hydrophobe/A | 96.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.54 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 96.53 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.48 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.48 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.46 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.43 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.41 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 96.37 | |
| COG5597 | 368 | Alpha-N-acetylglucosamine transferase [Cell envelo | 96.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.36 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.34 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.3 | |
| COG1033 | 727 | Predicted exporters of the RND superfamily [Genera | 96.21 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.18 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.96 | |
| COG1033 | 727 | Predicted exporters of the RND superfamily [Genera | 95.95 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.95 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.8 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.74 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 95.71 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.61 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.55 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 95.53 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.37 | |
| TIGR00833 | 910 | actII Transport protein. Characterized members of | 95.29 | |
| TIGR00921 | 719 | 2A067 The (Largely Archaeal Putative) Hydrophobe/A | 95.14 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.13 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.04 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.0 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.84 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.84 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 94.77 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 94.47 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.46 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 94.44 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 94.37 | |
| PF03024 | 167 | Folate_rec: Folate receptor family; InterPro: IPR0 | 94.36 | |
| PLN03182 | 429 | xyloglucan 6-xylosyltransferase; Provisional | 94.32 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.31 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 94.12 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 94.06 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.06 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 94.05 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 93.92 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 93.88 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 93.88 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 93.81 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 93.78 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 93.66 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 93.62 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 93.57 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 93.38 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.27 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 93.13 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 92.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 92.88 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.58 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.01 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.91 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 91.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.71 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 90.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 90.26 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 90.11 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 89.88 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 89.71 | |
| PF02460 | 798 | Patched: Patched family; InterPro: IPR003392 The t | 89.68 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.56 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 89.24 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 89.18 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.96 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 88.87 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 88.47 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 88.09 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 87.68 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 87.49 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 87.47 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 87.27 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 87.22 | |
| PF03407 | 212 | Nucleotid_trans: Nucleotide-diphospho-sugar transf | 86.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 86.63 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 86.56 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 86.02 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 85.24 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.18 | |
| PF05637 | 239 | Glyco_transf_34: galactosyl transferase GMA12/MNN1 | 85.12 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.7 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 83.98 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 83.92 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 83.54 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 83.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 82.62 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 82.08 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 81.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 81.69 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 81.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 81.41 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.34 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.71 | |
| PRK09687 | 280 | putative lyase; Provisional | 80.36 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 80.32 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 80.06 |
| >PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-149 Score=1347.34 Aligned_cols=631 Identities=75% Similarity=1.181 Sum_probs=608.0
Q ss_pred hhcCCCCcC-CCCCCCCCCCCCccchhhheeeccccccEEEeeeeccCCcccceecCCCCCCCCCCCCcccc--chhhhc
Q 040435 46 KAHRPLYDK-GDGAARFNNDPDIKDIDIIATYSDVSGAVRISRVKMSHLSASWILENPADGDNGLPNSSQTL--GDSFQA 122 (1991)
Q Consensus 46 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 122 (1991)
++|++++++ +++++++|+++|+++|||++||||++|+||+++|++++|++||+||||+++++++|+++|++ ++.++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (657)
T PLN02910 23 LQDNNLDEVYASSAAGVGNDPDEKDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKGSQRLEDSSSFQN 102 (657)
T ss_pred cccccccccccccCcccCCCccccchhhheeeecccccEEEEeeeeccccchhhhcCccccccCcccccccccchhhhcc
Confidence 678888888 69999999999999999999999999999999999999999999999999999999999999 344555
Q ss_pred ccCcccccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHhhhccCccccc
Q 040435 123 GMNLEENVEYPMGDHQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQDNENDNIMQETAFEQSKRLEPRVTG 202 (1991)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1991)
+.+.++.++++ +++|++|+|++++++.+++|+||+||++||+|++.|++||+|||+|++.++|++||||||++|++++|
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~d~~~~g 181 (657)
T PLN02910 103 GTGEEDNVSHS-TTNQTDESGIQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEADSQTQAAAIERSKSLDTSVKG 181 (657)
T ss_pred Ccccccchhhh-hhhccccccccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhHHHhhhhhccCccccc
Confidence 55555555555 58899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCCCchHHHHHHHHHH
Q 040435 203 KYSIWRRDFESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGH 282 (1991)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (1991)
||||||+||+++++|+++|+|||||||||||++|||.+|+.+|++||+++|||+||+||+|+.|++||+++++++|+|++
T Consensus 182 ~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~ 261 (657)
T PLN02910 182 KYSIWRRDYESPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGH 261 (657)
T ss_pred ceeeecccccccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCcccccCCCCC
Q 040435 283 VLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFE 362 (1991)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~~~~~~~~~~ 362 (1991)
+|++||+.+|||+++++|||+||+++||+++++|+|++|++||||+|||||||||+||||.|||.++.+.++.|++++++
T Consensus 262 ~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~ 341 (657)
T PLN02910 262 VLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLE 341 (657)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred CCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhH
Q 040435 363 DPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSV 442 (1991)
Q Consensus 363 ~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 442 (1991)
||+++|||++||||+|+||||+|++.|+++|+++|||||||++|+.+|++||..||+++++|+|+++|+|+|++.+|+++
T Consensus 342 dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pv 421 (657)
T PLN02910 342 DPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSV 421 (657)
T ss_pred CCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 443 LRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 443 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
++|+++.....|||..+..........+.++++|+|+|+++|+|||||++||+++||||||+|+||++||++||++||+|
T Consensus 422 l~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g 501 (657)
T PLN02910 422 LRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQG 501 (657)
T ss_pred HHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCC
Confidence 99999999999999987776666667799999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCch
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPG 602 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~ 602 (1991)
+++|||++|...++++..+++|++|.+..+|++..||||+|||+|||++||++++|+.++.|++.+.+..+|+++.++++
T Consensus 502 ~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqgsLPpg 581 (657)
T PLN02910 502 MVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPG 581 (657)
T ss_pred ceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccccCCCChH
Confidence 99999999999888999999999999988999999999999999999999999999999999999888888999999999
Q ss_pred hhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhccccccc
Q 040435 603 LITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 603 n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~l 677 (1991)
.++|++++++||.+||++|+||++......+++++||||+|+.|||.+.+..+|+++|.||++.|+||++.||+.
T Consensus 582 LLvF~g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kYl~~d~~fl~~Cni~ 656 (657)
T PLN02910 582 LITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRYVQYDNPYLQLCNIS 656 (657)
T ss_pred HHHHhCceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchHHHHHHccCCChHHHhCCCC
Confidence 999999999999999999999999988888999999999999999999999999999999999999999999974
|
|
| >PLN02829 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-110 Score=1010.95 Aligned_cols=461 Identities=59% Similarity=1.049 Sum_probs=445.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 040435 212 ESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQL 291 (1991)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1991)
+..++|+++|+|||||||||||++|||.+++++|++||+++|||+||+||||++|++||+++.+++|+|+++|++||+.+
T Consensus 177 ~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~~ 256 (639)
T PLN02829 177 QTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQ 256 (639)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCcccccCCCCCCCCcceEEE
Q 040435 292 YDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAI 371 (1991)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hi~~ 371 (1991)
|||+++++|||+||+++||+++++|+|++|++||||+|||||||||+||||.|||.++.+..+.|++++++||+++|||+
T Consensus 257 ~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~i 336 (639)
T PLN02829 257 DDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHYAL 336 (639)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999977888899999999999999
Q ss_pred EcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHHhhccc
Q 040435 372 FSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARL 451 (1991)
Q Consensus 372 ~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~~~~~ 451 (1991)
+||||+|+||||+|++.|+++|+++|||||||++|+.+|++||..||+++++|+|+++|+|+|++.+|+++++||++...
T Consensus 337 fSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~~~ 416 (639)
T PLN02829 337 FSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQSM 416 (639)
T ss_pred EecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccc
Q 040435 452 KEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETC 531 (1991)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~ 531 (1991)
..|+|..... ....+.++++|+|+|+++|+|||||++||+++||||||+|+||++||++||++||+|+++|||+||
T Consensus 417 ~~~yf~~~~~----~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc 492 (639)
T PLN02829 417 IDYYFRAHRA----NSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETC 492 (639)
T ss_pred hhhhhhcccc----CcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccc
Confidence 9999976332 234788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccccc
Q 040435 532 KESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTY 611 (1991)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~~~ 611 (1991)
...++++..+++|++|.+..+|.+..||||+|||||||++||++++|++++.|++.+.+..+|+++.++++.++|+++++
T Consensus 493 ~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlgaLPp~Ll~F~g~i~ 572 (639)
T PLN02829 493 GESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGLITFWKRTY 572 (639)
T ss_pred hhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCccccccCCChHHHHhcCceE
Confidence 98888999999999999888899999999999999999999999999999999988888888999999999999999999
Q ss_pred cccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhcccccc
Q 040435 612 PLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNL 676 (1991)
Q Consensus 612 ~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~ 676 (1991)
+||.+||++|+||++......+++++||||+|+.|||.+.+..+|+.+|.+|++.++||++.||+
T Consensus 573 ~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni 637 (639)
T PLN02829 573 PLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNI 637 (639)
T ss_pred ecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCC
Confidence 99999999999999887778899999999999999999999999999999999999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-105 Score=1101.90 Aligned_cols=804 Identities=30% Similarity=0.498 Sum_probs=757.9
Q ss_pred hhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCchHHHH
Q 040435 667 WSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYESFTSIGN 745 (1991)
Q Consensus 667 d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~~d~~~~n 745 (1991)
..+....+|.++.+|.+.|++++|+.+|++|.+.|+.| +..+|..++++|...+ ...|.++|+.+++.|..++..++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV-DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34566779999999999999999999999999999865 7889999999999876 788999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 040435 746 ALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYE 825 (1991)
Q Consensus 746 ~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~ 825 (1991)
+||.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|+..|+.||.+||+.+|++|++.+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 040435 826 GLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKN 904 (1991)
Q Consensus 826 a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv 904 (1991)
+.++|..+++.|+.+|..++|+||.+|++ |++++|.++|++|++||+++||+||.+|++.|+.++|+++|.+|.+. |+
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~ 284 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SV 284 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999987 89
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHH
Q 040435 905 EPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGL 984 (1991)
Q Consensus 905 ~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~ 984 (1991)
.||..||+++|.+|++.|+++.|+++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..||+++||+||.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Q 040435 985 VVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAW 1064 (1991)
Q Consensus 985 ~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~ 1064 (1991)
++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccc
Q 040435 1065 KLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEE 1144 (1991)
Q Consensus 1065 ~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d 1144 (1991)
++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.|+++|..+.+.|+.++
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999986 6999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
..++|+||++|+|+|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||.+||+++|.+|++.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
|++++|.++|+.|.+++|+.|+..||++|+++|+|+|++++|.+++++|+ ++||..+|++|+++|+.||+.+.|+.++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999998889999999999999999999999999999999998 7899999999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEcCeEeEEEcCCCCCCCCchhHHHHHHH
Q 040435 1305 SRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLAC 1384 (1991)
Q Consensus 1305 e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~~~~~~F~~~d~~~~~p~~~~i~~~~~ 1384 (1991)
+++++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|.||+|||+|++++|.|++||.+ ||+.++||..+.
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~--h~~~~~i~~~l~ 758 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES--HPQIKEINTVLE 758 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC--CcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999976 789999999888
Q ss_pred HhhcccccccccccccccccccccccccccccCCCCCCCccccCCCCCCCCCChhH-HHHHHhhCcCCCCCCCCCHHHHH
Q 040435 1385 LVTAEKTDTLLIKDVTSSERHSKEYCAMYDICGERSDGKVLNCPYGSPSVKPDELF-SAKIESLCPSISGNVCCTETQFE 1463 (1991)
Q Consensus 1385 ~l~~~~~~~~~~~dvts~~~~~~~~c~~~~~Cg~~~~~~~l~c~~~~~~~~~~~~~-~~~l~~~Cp~~~~~~CC~~~q~~ 1463 (1991)
.|...+...++.++.... .+..+.-.-...|+|+ ++|+.+|+...+|++.+. ..++.++|+ .|.+.-.+-
T Consensus 759 ~l~~~~~~~g~~~~~~~~-~~~~~~~k~~~~~~hs---e~la~a~~l~~~~~~~~i~i~knlr~c~-----dch~~~k~~ 829 (857)
T PLN03077 759 GFYEKMKASGLAGSESSS-MDEIEVSKDDIFCGHS---ERLAIAFGLINTVPGMPIWVTKNLYMCE-----NCHNTVKFI 829 (857)
T ss_pred HHHHHHHhCCcCCCcchh-ccccHHHHHHHHHhcc---HHHHHHHhhhcCCCCCeEEEeCCCEeCc-----cHHHHHHHH
Confidence 777766655555543221 1111111111234444 789999999888887666 478899999 898887643
Q ss_pred HHHHHHHhhcccccCChhHHhhHhhhcc
Q 040435 1464 TLRAQVQQAIPFLVGCPACLRNFLNLFC 1491 (1991)
Q Consensus 1464 ~l~~~~~~~~~~~~~CpaC~~N~~~~~C 1491 (1991)
+.+ .-+.++-|=+.+++.|.+-.|
T Consensus 830 ---s~~-~~r~i~~rd~~rfh~f~~g~c 853 (857)
T PLN03077 830 ---SKI-VRREISVRDTEQFHHFKDGEC 853 (857)
T ss_pred ---HHH-hCeEEEEecCCcceeCCCCcc
Confidence 333 226788899999999999988
|
|
| >PLN02769 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-107 Score=992.46 Aligned_cols=471 Identities=36% Similarity=0.650 Sum_probs=435.8
Q ss_pred hhhccCcccccchhccccccCCCChhHHHHHHHHHHHHHHHH-HHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCCC
Q 040435 192 QSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKAY-AHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELP 270 (1991)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1991)
.+...|.-+.|+|||||+||+++++|+++|+||||||||||| ++|||.+|+.+|++||++||||+||+||||+.|++||
T Consensus 155 e~~~~c~~~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp 234 (629)
T PLN02769 155 ENEKSCELEFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLP 234 (629)
T ss_pred cccccceeeccceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 445789999999999999999999999999999999999998 6999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCC
Q 040435 271 SSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGH 350 (1991)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~ 350 (1991)
+++.+++++|+++|++||+.+|||.++++|||+||+++||++++++||++|++||||+|||||||||+||||.|||.++.
T Consensus 235 ~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~ 314 (629)
T PLN02769 235 PFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSS 314 (629)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccc
Q 040435 351 HKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENID 430 (1991)
Q Consensus 351 ~~~~~~~~~~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~ 430 (1991)
++.+.+++++++||+++|||++||||+|++|+|+|++.|+++|+++|||||||+.++.+|++||..|++++++|+|+++|
T Consensus 315 ~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e 394 (629)
T PLN02769 315 LDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIE 394 (629)
T ss_pred hhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeee
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEec
Q 040435 431 SFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQK 510 (1991)
Q Consensus 431 ~f~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~ 510 (1991)
+|+|.+. .+++++|++......++|..... +..+.++|+|+|+++|+|||||++||+++||||||+|+||++
T Consensus 395 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqg 466 (629)
T PLN02769 395 DLILKDL-DKFALKQLSLPEEFRVSFRSVDN-------PSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQR 466 (629)
T ss_pred eeeeccc-chHHHHhhccchhhhhhhccCCC-------CchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecC
Confidence 9999765 48999999877655555544321 234566889999999999999999999999999999999999
Q ss_pred CCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchh
Q 040435 511 DLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANED 590 (1991)
Q Consensus 511 dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~ 590 (1991)
||++||++||+|+++|||++|...+..+..+++ ..++.+..||||||||||||++||+++++++++.|++.+..
T Consensus 467 DLseLw~iDL~gkviAAVedc~~rl~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~ 540 (629)
T PLN02769 467 DLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSK 540 (629)
T ss_pred cHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhh
Confidence 999999999999999999998654444333322 23577889999999999999999999999999999877533
Q ss_pred --ccccccCCCCchhhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhh
Q 040435 591 --RTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWS 668 (1991)
Q Consensus 591 --~~~~~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~ 668 (1991)
...|++++|+++|++|++++++||++||++++|++.......+++++||||+|+.|||++.+..+++++|++|++.|+
T Consensus 541 ~~~~~~~~~~Lp~lnlvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~ 620 (629)
T PLN02769 541 DGEESLRAAALPASLLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDD 620 (629)
T ss_pred cccccccccCcCHHHHHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCC
Confidence 456888999999999999999999999999999988777777899999999999999999999999999999999999
Q ss_pred hhcccccc
Q 040435 669 LRLRTWNL 676 (1991)
Q Consensus 669 p~l~~cn~ 676 (1991)
+|++.||+
T Consensus 621 ~fl~~Cni 628 (629)
T PLN02769 621 RFMDECNV 628 (629)
T ss_pred hHHhhCCC
Confidence 99999996
|
|
| >PLN02742 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-105 Score=964.94 Aligned_cols=461 Identities=51% Similarity=0.902 Sum_probs=442.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCC--CchHHHHHHHHHHHHHHhhh
Q 040435 212 ESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAEL--PSSALNQAQAMGHVLSIAKD 289 (1991)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 289 (1991)
+-.++|+++|+|||||||||||++|||.+|+++|++||+++|||+||+||+|++|+++ ++++.+++|+|+++|++||+
T Consensus 68 ~~~~~~~~~~~l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~ 147 (534)
T PLN02742 68 EMLSATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQD 147 (534)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHh
Confidence 4489999999999999999999999999999999999999999999999999999996 48999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCC---cccccCCCCCCCCc
Q 040435 290 QLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHK---KEEQINEKFEDPSL 366 (1991)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 366 (1991)
.+|||+++++|||+||+++||+++++|+|++|++||||+|+|||||||+||||.|||.++.++ ++++..++++||++
T Consensus 148 ~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l 227 (534)
T PLN02742 148 LHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNL 227 (534)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999884 44677889999999
Q ss_pred ceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHH
Q 040435 367 YHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQL 446 (1991)
Q Consensus 367 ~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l 446 (1991)
+|+|++||||+|++|+|+|++.|+++|+++|||||||+.++.+|++||.+|++++++|+|+++++|.|++.+++++++||
T Consensus 228 ~Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql 307 (534)
T PLN02742 228 YHFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQL 307 (534)
T ss_pred ceEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeE
Q 040435 447 ESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNG 526 (1991)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~a 526 (1991)
++.....|+|.... .....+.++++|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|
T Consensus 308 ~~~~~~~~yf~~~~----~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~via 383 (534)
T PLN02742 308 QDSDTQSYYFSGSQ----DDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNG 383 (534)
T ss_pred hhhhhhhhhccccc----ccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEE
Confidence 99999999998765 22345778999999999999999999999999999999999999999999999999999999
Q ss_pred eeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhh
Q 040435 527 AVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITF 606 (1991)
Q Consensus 527 aV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f 606 (1991)
||+||...++++..+++|++|.+..+++++.||||+|||||||++||++++|+.++.|++.+.+..+|+++.+++++++|
T Consensus 384 AVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~gaLpp~LLaF 463 (534)
T PLN02742 384 AVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGTLPPGLLTF 463 (534)
T ss_pred EeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhccccccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred ccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhcccccc
Q 040435 607 YNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNL 676 (1991)
Q Consensus 607 ~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~ 676 (1991)
++++++||.+||+.|+|++.......+++++||||+|+.|||.+.+..+++++|++|++.++||+++||+
T Consensus 464 ~g~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cni 533 (534)
T PLN02742 464 YGLTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNF 533 (534)
T ss_pred cCcceecChhheecccccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCCC
Confidence 9999999999999999998877777889999999999999999999999999999999999999999996
|
|
| >TIGR00917 2A060601 Niemann-Pick C type protein family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-100 Score=1045.23 Aligned_cols=554 Identities=50% Similarity=0.881 Sum_probs=462.2
Q ss_pred cccccccCCCCCCCccccCCCCCCCCCChhHHHHHHhhCcCC----CCCCCCCHHHHHHHHHHHHhhcccccCChhHHhh
Q 040435 1410 CAMYDICGERSDGKVLNCPYGSPSVKPDELFSAKIESLCPSI----SGNVCCTETQFETLRAQVQQAIPFLVGCPACLRN 1485 (1991)
Q Consensus 1410 c~~~~~Cg~~~~~~~l~c~~~~~~~~~~~~~~~~l~~~Cp~~----~~~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~~N 1485 (1991)
|+|||+||+.++++.+|||+++++++|+++.+++++++||++ .+++|||.+|+++|++||++++++++|||||+.|
T Consensus 1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N 80 (1204)
T TIGR00917 1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN 80 (1204)
T ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence 999999999998999999999999999999999999999974 3569999999999999999999999999999999
Q ss_pred HhhhccccccCcCCCcceEEEeecccCCcceEEEEEEEEchhhhHHHhhcCcCCCCCCCChhHHhhcCCC---cCCHHHH
Q 040435 1486 FLNLFCELSCSPNQSQFINVTSVSEVNGNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDFIGAG---AKSFKEW 1562 (1991)
Q Consensus 1486 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~~am~~~g~~---a~~~~~~ 1562 (1991)
|+++||+||||||||+||+||++.+.+++++|+++||||+++||+++|||||||+||++|++|||||||+ +|||++|
T Consensus 81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w 160 (1204)
T TIGR00917 81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW 160 (1204)
T ss_pred HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence 9999999999999999999999987667789999999999999999999999999999999999999887 8999999
Q ss_pred HHhhcCCCCCCCCCCCeEEEeecCCCC-CCccccCCCCccCCCCC----CCCcccCCCCCCCCCCCCCCCCCCCCCCcee
Q 040435 1563 FAFIGQKAPPGFPGSPYAINFKLSIPE-SSGLELMNVSTYSCGDT----SLGCSCGDCPLSPMCSSSEPPSPPRKEACTI 1637 (1991)
Q Consensus 1563 l~flG~~~~~~~~~sPfqInf~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~s~~C~~~~~~~~~~~~~~~~ 1637 (1991)
|+||||+++ +||||||||+++..+ +.+++|||..+++|+|+ .++|||+|||+| ||.+||+++ ++++|.
T Consensus 161 ~~f~G~~~~---~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~~--c~~~~~~~~-~~~~~~- 233 (1204)
T TIGR00917 161 IGQMAGVNN---PGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDCS--CKAKPPTPP-KPSCSI- 233 (1204)
T ss_pred HHhcCCCCC---CCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchhh--CCCCCCCCC-CCCceE-
Confidence 999999853 489999999987633 44899999999999987 489999999986 987766433 234444
Q ss_pred EecCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCC-cccccCC--CCCCCCCCcchhccccCCCCCCCCC
Q 040435 1638 RIGSLKVKCVELSLVIAYVVLISTFFGWALFQRTRERRIP-PSSV-EPLIKST--SDSGPDSGIMEEVNARDLLPTEGGG 1713 (1991)
Q Consensus 1638 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 1713 (1991)
+|++ +|++|+++++|+++++++++|.+..+.++++.+ ..+. ....+.. ..++.+.+ .. ...+. .
T Consensus 234 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~-~ 301 (1204)
T TIGR00917 234 -ILGV--DAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEINSSNNQSDQN------TP--QRNEG-Q 301 (1204)
T ss_pred -EEcC--cchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc------cc--ccccc-h
Confidence 4655 899999999998877766655444332222211 1110 0000000 00111100 00 11112 3
Q ss_pred ccchHHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEE
Q 040435 1714 LSVVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQ 1793 (1991)
Q Consensus 1714 ~~~~~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~q 1793 (1991)
.++++.+++++|++||.+|+||||++|+++++++++|++|+.++++||||++||+||+|++++|++|||++||||||++|
T Consensus 302 ~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~eq 381 (1204)
T TIGR00917 302 LATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRIEQ 381 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccceEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccccccCCccccccccccccCC-CCCCcccHHHHhhcCcCCCCCc-
Q 040435 1794 LILATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPLG-EDCASQSVLQYFKMDPENYDSY- 1871 (1991)
Q Consensus 1794 vii~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~~~~~~~~~tl~DiC~kp~~-~~C~i~S~l~yf~~~~~~~~~~- 1871 (1991)
|||++++.+.....||||++++|++|++|++.|++++. + ++||+|+|+||++ ..|.++|+++|||++..+++..
T Consensus 382 vii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~--~--~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~~~ 457 (1204)
T TIGR00917 382 LIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA--N--LITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPEN 457 (1204)
T ss_pred EEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc--c--CCChhccccccCCCCCCccCCHHHHhccChhhcCccc
Confidence 99998642211234699999999999999999999853 2 4899999999985 6899999999999987655432
Q ss_pred -------cCcccccccccccCCCccccccCCCCCCcccccCCccCCCcccccEEEEEEEeccCCCcchHhhHHHHHHHHH
Q 040435 1872 -------GGIEHAEYCFQHYASSDTCLSAFKAPLDPSTVLGGFSGNNYSEASAFIITYPVNNAIDETSKENRKAVAWEKA 1944 (1991)
Q Consensus 1872 -------~~~~~~~~c~~~~~~~~~c~~~~g~pv~~~~~lGG~~~~~~~~A~A~~lty~l~n~~~~~~~~~~~a~~WE~~ 1944 (1991)
+|.+|+.+|.. +|++|++.||+|++|+.+|||++++++.+|+|+++||+++|+.+++ +..+.|.+||++
T Consensus 458 ~~~~~~~~~~~~~~~c~~---~p~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~~-~~~~~a~~WE~~ 533 (1204)
T TIGR00917 458 YDDGFGVDYVKYCFECFT---SPESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNKT-DKLEKAVAWEKA 533 (1204)
T ss_pred ccccccccHHHhhhcccc---CcchhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCCc-hhhhHHHHHHHH
Confidence 35677788865 4568999999999999999999988999999999999999875443 235789999999
Q ss_pred HHHHHHhhhccccCCCCeEEEEEecccHHHHHhhhhcccccEEEEeC
Q 040435 1945 FIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTIVVSL 1991 (1991)
Q Consensus 1945 f~~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~s~~dv~~~~iS~ 1991 (1991)
|+++++++.. .....+++++|+||+|++||+++++++|+|++++||
T Consensus 534 f~~~~~~~~~-~~~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isy 579 (1204)
T TIGR00917 534 FIQFAKNYLL-PNVQAKLDISFSSERSIEDELKRESTADVITILVSY 579 (1204)
T ss_pred HHHHHHHhhc-cccccceEEEEeccccHHHHHhhccchhHHHHHHHH
Confidence 9999998631 112236899999999999999999999999988764
|
The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis. |
| >PLN02718 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-97 Score=904.63 Aligned_cols=440 Identities=48% Similarity=0.876 Sum_probs=417.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHHHhhhccC
Q 040435 213 SPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLY 292 (1991)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1991)
..++|+++|+|||||||||||++|||.+++.+|++||+++|||+||+||+|+.|++||+++.+++++|+++|++||+.+|
T Consensus 160 ~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~ 239 (603)
T PLN02718 160 RRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFP 239 (603)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccc
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCcccccCCCCCCCCcceEEEE
Q 040435 293 DCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIF 372 (1991)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hi~~~ 372 (1991)
||+++++|||+||+++||+++++|+|++|++||||+|+|||||||+||||+|||.++.+.++.|++++++||+++|||++
T Consensus 240 d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~~ 319 (603)
T PLN02718 240 NCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVF 319 (603)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred cccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHHhhccce
Q 040435 373 SDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLK 452 (1991)
Q Consensus 373 ~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~~~~~~ 452 (1991)
+||++|++|+|+|++.|+.+|.+++|||+||++++.+|+.||..+++.+++|++.++++|.|++.++.++++++++
T Consensus 320 sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s---- 395 (603)
T PLN02718 320 SDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNS---- 395 (603)
T ss_pred cCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhccc----
Confidence 9999999999999999999999999999999999999999999999889999999999999999999998888842
Q ss_pred EEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccch
Q 040435 453 EYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCK 532 (1991)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~ 532 (1991)
..++++|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||.
T Consensus 396 ---------------------~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~ 454 (603)
T PLN02718 396 ---------------------HDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCL 454 (603)
T ss_pred ---------------------cccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEecccc
Confidence 13578999999999999999999999999999999999999999999999999999997
Q ss_pred h---hhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccc
Q 040435 533 E---SFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNL 609 (1991)
Q Consensus 533 ~---~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~ 609 (1991)
. .+..+..+++|++|.+..++.+..||||+|||||||++||+++++++++.|++.+.+...|+.++++++|++|+++
T Consensus 455 ~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~dqdaLpp~LlvF~gr 534 (603)
T PLN02718 455 EGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKAGSLPIGWLTFYNQ 534 (603)
T ss_pred ccccchhhhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCccccCcccccHHHHHhcCc
Confidence 6 3455667788999988778899999999999999999999999999999999988777778888888889999999
Q ss_pred cccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhccccccc
Q 040435 610 TYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 610 ~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~l 677 (1991)
+++||.+||++++|++.......+++++||||+|+.|||.+.+...|+++|.|||+.|+||++.||+.
T Consensus 535 i~~LD~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~Cn~~ 602 (603)
T PLN02718 535 TVALDKRWHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNIH 602 (603)
T ss_pred eeecChHHhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhcCCC
Confidence 99999999999999988776677899999999999999999999999999999999999999999974
|
|
| >PLN02523 galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-95 Score=870.32 Aligned_cols=462 Identities=49% Similarity=0.882 Sum_probs=426.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhcCccc-----hHHHHHHHHHH-----hhhhhcccC---CC----CCCCchHHHH
Q 040435 214 PNTDSTLKLMRDQIILAKAYAHVAKSKNESS-----LYNSLMKHCKE-----SQRAIGDAN---SD----AELPSSALNQ 276 (1991)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~---~~----~~~~~~~~~~ 276 (1991)
++.|.|.||..|++.++.||+++||+++.+. ++.+|++|+++ +.|++.+.. .| .+||.++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (559)
T PLN02523 78 TRLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKER 157 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHH
Confidence 5779999999999999999999999999883 88899999997 334433311 11 3468899999
Q ss_pred HHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCc--c
Q 040435 277 AQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKK--E 354 (1991)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~--~ 354 (1991)
+|+|+++|++|| .+||++++++|||+||+++||+++++|+|++|++||||+|||||||||+||||+|||.++.++. +
T Consensus 158 ~k~~~~~~~~a~-~~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~ 236 (559)
T PLN02523 158 VKVARQMIAESK-ESFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEG 236 (559)
T ss_pred HHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccC
Confidence 999999999999 5999999999999999999999999999999999999999999999999999999999998753 3
Q ss_pred cccCCCCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhh
Q 040435 355 EQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKW 434 (1991)
Q Consensus 355 ~~~~~~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~ 434 (1991)
++..++++||+++|+|++||||+|++|+|+|++.|+++|.+++||||||++|+.+|++||..+++.+++|+|++|++|+|
T Consensus 237 ~~~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ 316 (559)
T PLN02523 237 KPPPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKF 316 (559)
T ss_pred CCcchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhh
Confidence 55669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCch
Q 040435 435 LNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTP 514 (1991)
Q Consensus 435 l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~ 514 (1991)
++++++++++|+++.....|+|........ ....+.++++|+|+|+++|+|||||++||+++||||||+|+||++||++
T Consensus 317 ln~~~~pvlk~l~s~~~~~~~f~~~~~~~~-~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLse 395 (559)
T PLN02523 317 LNSSYVPVLRQLESANLQKFYFENKLENAT-KDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTG 395 (559)
T ss_pred cccccchHHHhhhhhhhhhhhccccccccc-cccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHH
Confidence 999999999999999999999987554333 4457889999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhcccc
Q 040435 515 LWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLW 594 (1991)
Q Consensus 515 L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~ 594 (1991)
||++||+|+++|||+||...++++..+++|++|.+..+|++..||||+|||||||++||++++|++++.|++.+.+...|
T Consensus 396 Lw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~l~ 475 (559)
T PLN02523 396 LWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLW 475 (559)
T ss_pred HHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhccccccc
Confidence 99999999999999999777788889999999999889999999999999999999999999999999999877777778
Q ss_pred ccCCCCchhhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhcccc
Q 040435 595 KLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTW 674 (1991)
Q Consensus 595 ~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~c 674 (1991)
+++.++++|++|++++++||.+||++++|+++......+++|+||||+|+.|||.+.+..+++++|++|++.|++|++.|
T Consensus 476 DqdaLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~~C 555 (559)
T PLN02523 476 KLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQAC 555 (559)
T ss_pred cccccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHHhC
Confidence 88888888999999999999999999999988777777899999999999999999999999999999999999999999
Q ss_pred ccc
Q 040435 675 NLR 677 (1991)
Q Consensus 675 n~l 677 (1991)
|+-
T Consensus 556 n~~ 558 (559)
T PLN02523 556 NFG 558 (559)
T ss_pred CCC
Confidence 973
|
|
| >PLN02870 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-93 Score=855.14 Aligned_cols=412 Identities=41% Similarity=0.798 Sum_probs=372.2
Q ss_pred hhcccCCCCCCCchHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccch
Q 040435 259 AIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLP 338 (1991)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~ 338 (1991)
.-+||+.|++||+++ ++++.+||+.+|||+++++|||+||+++||+++++|+|++|++||||+|||||||||+
T Consensus 103 ~~~~~~~d~~lp~s~-------~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~ 175 (533)
T PLN02870 103 NTEEIPDGLKLPDSF-------SQLVSDMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAASSIPKGIHCLS 175 (533)
T ss_pred ccccccccccCChhH-------HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Confidence 357899999999999 4555589999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcCCCCccccc---CCCCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHH
Q 040435 339 LQLAADYYLQGHHKKEEQI---NEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFL 415 (1991)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~ 415 (1991)
||||+|||.++.++.+.++ .++++||+++|+|++||||+|+||+|+|++.|+++|+++|||||||++|+.+|++||.
T Consensus 176 mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvvTD~~n~~aM~~WF~ 255 (533)
T PLN02870 176 LRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFA 255 (533)
T ss_pred hhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh
Confidence 9999999999988766554 4599999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcceeeeccchhhhhhhhhhhHHHHHhhccce-EEEecCCCCCCCcC------CcCCcccCCCCcchhhhHHHHh
Q 040435 416 VNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLK-EYYFKANHPSSLSA------GSDNLKYRNPKYLSMLNHLRFY 488 (1991)
Q Consensus 416 ~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~s~~~y~Rl~ 488 (1991)
.||+++++|||+++|+|+||+.+++|+|+|+++.+.. .|+|.......... ...+.++++|+|+|+++|+|||
T Consensus 256 ~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~lny~Rl~ 335 (533)
T PLN02870 256 LNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIY 335 (533)
T ss_pred hCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCccccCHHHHHHHH
Confidence 9999999999999999999999999999999998774 44444333222111 1347889999999999999999
Q ss_pred hcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhh-----hccccccccCCCccccCCCCCCCcccccc
Q 040435 489 LPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKES-----FHRFDKYLNFSNPLISENFSPNACGWAFG 563 (1991)
Q Consensus 489 ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~yfNsG 563 (1991)
||++||+++||||||+|+||++||++||++||+|+++|||+||... .+++..|+||++|.+..+++++.||||||
T Consensus 336 LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSG 415 (533)
T PLN02870 336 LPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYG 415 (533)
T ss_pred HHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeecc
Confidence 9999999999999999999999999999999999999999998542 35667899999999999999999999999
Q ss_pred eeEeehHHHHHhhHHHHHHHHHHhchhc--cccccCCCCchhhhhccccccccccccccccCCCccccccccCCceEeec
Q 040435 564 MNMFDLKEWRKRNITGIYHYWQDANEDR--TLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHY 641 (1991)
Q Consensus 564 Vll~nl~~wR~~~~~~~~~~~~~~~~~~--~~~~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY 641 (1991)
||||||++||+++++++++.|++.+... ..|+++.++++|++|++++++||.+||++++||+.......+++++||||
T Consensus 416 VlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy~~~~~~~~i~~aaIIHY 495 (533)
T PLN02870 416 MNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQSKTNIESVKKAAVIHY 495 (533)
T ss_pred chhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCCcccccccccCCcEEEEE
Confidence 9999999999999999999999876432 33444445555899999999999999999999988766677889999999
Q ss_pred ccCCCccccccccccccccchhhhhhhhhccccccc
Q 040435 642 NGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 642 ~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~l 677 (1991)
+|+.|||++++...++.+|.+|++.+++|+++||+.
T Consensus 496 ~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 496 NGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred CCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 999999999999999999999999999999999986
|
|
| >PLN02867 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-91 Score=842.03 Aligned_cols=423 Identities=35% Similarity=0.621 Sum_probs=376.5
Q ss_pred HHhhhhhcccCCCCCCCchHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCc
Q 040435 254 KESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRP 333 (1991)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (1991)
+|-+|+++||+.|.++|..+.+++++|++++++||+.+|||+++++|||||||++||+++++|+|++|++||||+|||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK~ 175 (535)
T PLN02867 96 EELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKS 175 (535)
T ss_pred HHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHhhcCCCCcccccCC---CCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHH
Q 040435 334 LHCLPLQLAADYYLQGHHKKEEQINE---KFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAM 410 (1991)
Q Consensus 334 ~~cl~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~ 410 (1991)
||||+||||+|||.++.++++.|+++ +++||+++|+|++||||+|+||+|+|++.|+++|+++|||||||++|+.+|
T Consensus 176 lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~aM 255 (535)
T PLN02867 176 LHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYTPM 255 (535)
T ss_pred ccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHH
Confidence 99999999999999998877665444 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHHhhccce-EEEecCC---CCCCCcCCcCCcccCCCCcchhhhHHH
Q 040435 411 KMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLK-EYYFKAN---HPSSLSAGSDNLKYRNPKYLSMLNHLR 486 (1991)
Q Consensus 411 ~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~y~R 486 (1991)
++||..||+++++|||+++|+|+|++.+++++++++++.+.. .++|... ..........+.++++|+|+|+++|+|
T Consensus 256 ~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnYlR 335 (535)
T PLN02867 256 HAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHLR 335 (535)
T ss_pred HHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHHHH
Confidence 999999999999999999999999999999999999886643 1121110 000001122467789999999999999
Q ss_pred HhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchh--h---hccccccccCCCccccCCCCCCCcccc
Q 040435 487 FYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKE--S---FHRFDKYLNFSNPLISENFSPNACGWA 561 (1991)
Q Consensus 487 l~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~yfN 561 (1991)
|+||++||+++||||||+|+||++||++||++||+|+++|||.|..+ . ..++..|++|++|.+..++++..||||
T Consensus 336 flIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cYFN 415 (535)
T PLN02867 336 IYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCAWL 415 (535)
T ss_pred HHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCccee
Confidence 99999999999999999999999999999999999999999977422 1 245677999999998888999999999
Q ss_pred cceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchh---hhhccccccccccccccccCCCcccc-ccccCCce
Q 040435 562 FGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGL---ITFYNLTYPLDRSWHVLGLGYDPALN-LTQIDNGA 637 (1991)
Q Consensus 562 sGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n---~~f~~~~~~L~~~wN~~~~~~~~~~~-~~~~~n~~ 637 (1991)
||||||||++||+++++++++.|++.+... ...+.|||.+| ++|++++++||.+||+.++|++.... ...+++|+
T Consensus 416 SGVmLINL~~WRe~nITek~~~~Le~n~~~-~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~~i~~pa 494 (535)
T PLN02867 416 YGMNVFDLKAWRRTNITEAYHKWLKLSLNS-GLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILESAA 494 (535)
T ss_pred cceeeeeHHHHHHhcHHHHHHHHHHhchhc-ccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhhhcCCcE
Confidence 999999999999999999999999987542 13345666666 59999999999999999988876432 24468999
Q ss_pred EeecccCCCccccccccccccccchhhhhhhhhccccccc
Q 040435 638 VVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 638 IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~l 677 (1991)
||||+|+.|||++++..+++++|.+|++.+.+|+|.||++
T Consensus 495 IIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 495 VLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred EEEECCCCCcccccCCCchhHHHHHhcCccchHHHhcccC
Confidence 9999999999999999999999999999999999999986
|
|
| >PLN02659 Probable galacturonosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-91 Score=835.41 Aligned_cols=401 Identities=37% Similarity=0.704 Sum_probs=363.8
Q ss_pred HHHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCccc
Q 040435 276 QAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEE 355 (1991)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~~~ 355 (1991)
.+..+++++.+||+.+|||+++++|||+||+++||+++++|+|+.+++||||+|+|||||||+||||+|||.++.++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~ 193 (534)
T PLN02659 114 IPQTLEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQL 193 (534)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCchhhhcc
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred cc---CCCCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchh
Q 040435 356 QI---NEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSF 432 (1991)
Q Consensus 356 ~~---~~~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f 432 (1991)
++ .++++||+++|+|++||||+|+||||+|++.|+++|+++|||||||++|+.+|++||..||+++|+|||+++|+|
T Consensus 194 ~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~~~~a~v~V~~~e~f 273 (534)
T PLN02659 194 PLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHPLSPAIIEVKALHHF 273 (534)
T ss_pred CCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEEeehhc
Confidence 43 348999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHhhccceEEEecCCCCCCCc-------CCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCC
Q 040435 433 KWLNSSYCSVLRQLESARLKEYYFKANHPSSLS-------AGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDD 505 (1991)
Q Consensus 433 ~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~D 505 (1991)
+||+.+|+|+++||++.....++|..+...... ....+.++++|+|+|+++|+||+||++||+++||||||+|
T Consensus 274 ~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPeLLP~LdKVLYLD~D 353 (534)
T PLN02659 274 DWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDD 353 (534)
T ss_pred ccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHHHhhhcCeEEEeeCC
Confidence 999999999999999988888888754432111 1134678899999999999999999999999999999999
Q ss_pred EeEecCCchhhccCCCCCeeEeeccchhh-----hccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHH
Q 040435 506 IVVQKDLTPLWSVDLHGMVNGAVETCKES-----FHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGI 580 (1991)
Q Consensus 506 ivv~~dl~~L~~~dl~~~~~aaV~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~ 580 (1991)
+||++||++||++||+|+++|||+||... ..++..++++++|.+..++++..||||||||||||++||+++++++
T Consensus 354 VVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek 433 (534)
T PLN02659 354 IVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISST 433 (534)
T ss_pred EEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeEeeHHHHHhcChHHH
Confidence 99999999999999999999999998532 2567788899999998899999999999999999999999999999
Q ss_pred HHHHHHhchhccccccCCCCch---hhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccc
Q 040435 581 YHYWQDANEDRTLWKLGTLPPG---LITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYK 657 (1991)
Q Consensus 581 ~~~~~~~~~~~~~~~~~dqd~~---n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~ 657 (1991)
++.|++.+.+. ...+.|||++ |++|++++++||.+||++++|++.......+++++||||+|+.|||++++..+++
T Consensus 434 ~l~~l~~n~~~-~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~~KPW~~~~~~~yr 512 (534)
T PLN02659 434 YHHWLEENLKS-DLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGRAKPWLDIAFPQLR 512 (534)
T ss_pred HHHHHHhcccc-cccccccccchHHHHHhcCCEEECChhheecCCcccccccccccCCcEEEEECCCCCccccccCCcch
Confidence 99999876432 1334455555 7999999999999999999999877666678899999999999999999999999
Q ss_pred cccchhhhhhhhhccccccc
Q 040435 658 PYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 658 ~~W~~yv~~d~p~l~~cn~l 677 (1991)
++|.||++.++||+++||++
T Consensus 513 ~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 513 PLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred hHHHHHhccCCHHHHhcCCC
Confidence 99999999999999999986
|
|
| >KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-85 Score=847.88 Aligned_cols=538 Identities=39% Similarity=0.706 Sum_probs=458.7
Q ss_pred cccccccccCCCCCCCccccCCCCC-CCCCChhHHHHHHhhCcCCCC---CCCCCHHHHHHHHHHHHhhcccccCChhHH
Q 040435 1408 EYCAMYDICGERSDGKVLNCPYGSP-SVKPDELFSAKIESLCPSISG---NVCCTETQFETLRAQVQQAIPFLVGCPACL 1483 (1991)
Q Consensus 1408 ~~c~~~~~Cg~~~~~~~l~c~~~~~-~~~~~~~~~~~l~~~Cp~~~~---~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~ 1483 (1991)
++|+|||.||++...+.+||+++.| +.+........++..||.+.+ .+||++.|+++|++++++|.++++|||+|.
T Consensus 1 ~~c~m~g~cg~~~~~~~~n~~~~~p~~~~~~~~~~~~~~~lc~~~~~~~~~~Cct~~Q~~~L~~~l~~a~~~l~rcP~c~ 80 (1201)
T KOG1933|consen 1 AYCAMYGKCGKNSGNAVLNCPLNEPTARPIISNAYYKIQKLCPGLPTGDFTLCCTASQLELLKLSLQQAGPLLSRCPSCF 80 (1201)
T ss_pred CeeEEEcccccCCCCCccCCccCCCccccccccHHHHHHHhccccccCCceeeecHHHHHHHHhhhhhhhhhhccCCccc
Confidence 5899999999998778999999998 777777888999999999865 499999999999999999999999999999
Q ss_pred hhHhhhccccccCcCCCcceEEEeecccCCcceEEEEEEEEchhhhHHHhhcCcCCCCCCCChhHHhh-c-CCCcCCHHH
Q 040435 1484 RNFLNLFCELSCSPNQSQFINVTSVSEVNGNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDF-I-GAGAKSFKE 1561 (1991)
Q Consensus 1484 ~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~~am~~-~-g~~a~~~~~ 1561 (1991)
+||.++||+||||||||.|++|+.+..- .|++++|+++.+|++++|+|||+|+|+++|++||++ + |++++++++
T Consensus 81 ~nf~~l~c~~tcspnqs~F~~v~~~~~~----~V~~ie~~~~~~fae~~y~sC~~v~~~~~~~~ai~~~~~g~~a~~~~~ 156 (1201)
T KOG1933|consen 81 DNFVNLFCHFTCSPNQSLFWNVTATAAY----KVQQIEYSLTDSFAEGLYESCKRVKFAAANGLAIRLMCLGKGAKNFEE 156 (1201)
T ss_pred ccchhhhhhcccCCCcCceEEeeccccc----eeeEEEEEEeehhhhhccccccccchhcccchhhhhhhcCCCchHHHH
Confidence 9999999999999999999999987432 299999999999999999999999999999999996 4 667788999
Q ss_pred HHHhhcCCCCCCCCCCCeEEEeecCCCCCCccccCCCCccCCCCCC-CCcccCCCCCCCCCCCCCCCCCCCCCCceeEec
Q 040435 1562 WFAFIGQKAPPGFPGSPYAINFKLSIPESSGLELMNVSTYSCGDTS-LGCSCGDCPLSPMCSSSEPPSPPRKEACTIRIG 1640 (1991)
Q Consensus 1562 ~l~flG~~~~~~~~~sPfqInf~~~~~~~~~~~~~~~~~~~C~~~~-~~CsC~dC~~s~~C~~~~~~~~~~~~~~~~~i~ 1640 (1991)
|+.|+|+++| + +++||+|+|+...+.+..+.|||...++|++.+ ++|+|+|||++ |+...+++.|. +++.+|
T Consensus 157 ~~~f~g~~~~-~-~~~Pl~i~~~~~~~~~~~~~~~N~~~~~cd~~~v~~c~~~dc~~~--c~~~~~~~~~~---~~~~v~ 229 (1201)
T KOG1933|consen 157 WLEFIGDKNP-G-QSSPLRIEFLCSLPSPASIWYMNVEVKPCDDDTVPACSCSDCPET--CPASLLLKSPT---ETFVVG 229 (1201)
T ss_pred HHHHhcCCCc-c-CCCcceeccccccCCccceeecccccccCCcccccccchhcchhh--cCccccCCCCc---cceeec
Confidence 9999999874 2 579999999998765555999999999999874 99999999976 98876654442 277889
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCCCCCCcchhccccCCCCCCCCCccchHHH
Q 040435 1641 SLKVKCVELSLVIAYVVLISTFFGWALFQRTRERRIPPSSVEPLIKSTSDSGPDSGIMEEVNARDLLPTEGGGLSVVQGY 1720 (1991)
Q Consensus 1641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1720 (1991)
++.+.++.+++.++|.+++++|+++......+.+.+... .... .+. .......+|.+
T Consensus 230 ~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~a~~~~------~~~~---~~~--------------~~~~~~~~~~~ 286 (1201)
T KOG1933|consen 230 GIPGLSVFLILAFIFFAALLVFLGYSLKVLHRIRAKLGD------DGTP---VDS--------------SPTSDFSTETF 286 (1201)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHheeccccccccc------cCcc---ccC--------------CcccchhHHHH
Confidence 885555555777788888888887765532221111100 0000 000 00001248999
Q ss_pred HHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeCC
Q 040435 1721 MLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLP 1800 (1991)
Q Consensus 1721 l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~~ 1800 (1991)
++.+|++||.+|++||.+++.+++.+++.||.|++++.++||||+||+.|+|++|.||+|||.|||||||++|+||++.+
T Consensus 287 l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf~r~eqi~l~~~~ 366 (1201)
T KOG1933|consen 287 LEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPFYRTEQIILTAVN 366 (1201)
T ss_pred HHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCcchhHHHHHHHhhhcCchhhhhhheeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhccccccCCccccccccccccCCC--CCCcccHHHHhhcCcCCCC--------C
Q 040435 1801 DPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPLGE--DCASQSVLQYFKMDPENYD--------S 1870 (1991)
Q Consensus 1801 ~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~~~~~~~~~tl~DiC~kp~~~--~C~i~S~l~yf~~~~~~~~--------~ 1870 (1991)
.+... .++++..+.|++++++|+.|.++.+..+ +++|+|+|++|+++ +|+++|++||||++.++++ .
T Consensus 367 ~~~~~-~~~i~~~~~l~~vldiq~~v~~~~~~~~--~~~l~dic~~pi~~~~~c~i~s~~~YFq~~~~~~~~~~~~~~~~ 443 (1201)
T KOG1933|consen 367 TSSEV-YPPILLVEGLELVLDIQNSVKELLTSSD--NISLDDICYAPIGKNGACLIQSLTQYFQLSLSNLENKLNDSFFM 443 (1201)
T ss_pred Ccccc-CCchHHHHHHHHHHHHHHHHHHhccCCC--ccchheeeeeeccCCcchhhhhhHhhhccChhhhhccccccchh
Confidence 54332 2379999999999999999999987653 78999999999974 5899999999999887543 1
Q ss_pred ccCcccccccccccCCCccccccCCCCCCcccccCCccCCCcccccEEEEEEEeccCCCcchHhhHHHHHHHHHHHHHHH
Q 040435 1871 YGGIEHAEYCFQHYASSDTCLSAFKAPLDPSTVLGGFSGNNYSEASAFIITYPVNNAIDETSKENRKAVAWEKAFIQLAK 1950 (1991)
Q Consensus 1871 ~~~~~~~~~c~~~~~~~~~c~~~~g~pv~~~~~lGG~~~~~~~~A~A~~lty~l~n~~~~~~~~~~~a~~WE~~f~~~~~ 1950 (1991)
++|.+|+.+|.++|. +|+++||+|++|..++||+.+.++..|+|+++||+++|+..+... +++|.+||++|+++++
T Consensus 444 ~~~~~~~~~c~r~p~---~Cl~~f~~Pi~P~~~fgg~~~~~~~~a~~~~vTf~v~n~~~~~~~-~~~a~~We~~f~~~~~ 519 (1201)
T KOG1933|consen 444 DFWKNHLIDCIRNPL---SCLGTFGGPIDPILVFGGFSGKGYSLANALVVTFLVTNYYLAPEL-TDQAVAWEKAFVNFAK 519 (1201)
T ss_pred hHHHHHHHHHhhCch---hhhcccCCCCCchhhhcCCCccchhhceeEEEEEEEEeeccCcch-hhHHHHHHHHHHHHHH
Confidence 368899999999776 799999999999999999987678999999999999999776544 6899999999999999
Q ss_pred hhhccccCCCCeE-EEEEecccHHHHHhhhhcccccEEEEeC
Q 040435 1951 EELLPMVQSSNLT-LSFSSESSLEEELKRESTADVVTIVVSL 1991 (1991)
Q Consensus 1951 ~~~~~~~~~~~l~-vs~~aerSledEl~r~s~~dv~~~~iS~ 1991 (1991)
++ ..+.+. ++|++|||++|||++.+..|+.+++|||
T Consensus 520 ~~-----~~~~~~~~sf~aErsi~~ei~~~s~~D~~t~~isy 556 (1201)
T KOG1933|consen 520 DY-----LLPHLLAISFMAERSIEDEINRESEGDVITVVISY 556 (1201)
T ss_pred HH-----hhhccchheeeccCccchhhccCCcCCceEEEeeh
Confidence 98 344555 8999999999999999999999999986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-77 Score=805.96 Aligned_cols=602 Identities=27% Similarity=0.458 Sum_probs=562.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 040435 868 CERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGN 947 (1991)
Q Consensus 868 ~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~n 947 (1991)
..++.++|+.+|.++.+.|++++|+++|..|....+..||..||+.++.+|++.++++.|+++|..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999999865688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhh
Q 040435 948 SLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPME 1027 (1991)
Q Consensus 948 aLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~ 1027 (1991)
+|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCC
Q 040435 1028 CKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEK 1107 (1991)
Q Consensus 1028 a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~ 1107 (1991)
++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHH
Q 040435 1108 PNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYG 1187 (1991)
Q Consensus 1108 Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~ 1187 (1991)
||..||++++.+|++.|.++.|+++|..+.+.|+.+|..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040435 1188 MNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+++|+.|+..||++||++|+|+|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCc
Q 040435 1268 DLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVK 1347 (1991)
Q Consensus 1268 ~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~ 1347 (1991)
+++++|+ ..|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|+..|+|++|.++++.|+++|++
T Consensus 483 ~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 483 AMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999998 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEEEEcCeEeEEEcCCCCCCCCchhHHHHHHHHhhccccccccccc-------ccccccccccccccccccCCCC
Q 040435 1348 VVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLACLVTAEKTDTLLIKD-------VTSSERHSKEYCAMYDICGERS 1420 (1991)
Q Consensus 1348 k~~g~s~i~v~~~~~~F~~~d~~~~~p~~~~i~~~~~~l~~~~~~~~~~~d-------vts~~~~~~~~c~~~~~Cg~~~ 1420 (1991)
|.||+|||++++++|.|++||.+ ||+.++||..+..+...+...++.++ ++..++ -...|+|+
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~--h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~-------~~~~~~hs- 630 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRL--HPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEE-------KVSGRYHS- 630 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCC--CccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHH-------HHHHHhcc-
Confidence 99999999999999999999976 78999999877766665554444343 322111 11223344
Q ss_pred CCCccccCCCCCCCCCChhH-HHHHHhhCcCCCCCCCCCHHHHHHHHHHHHhhcccccCChhHHhhHhhhccc
Q 040435 1421 DGKVLNCPYGSPSVKPDELF-SAKIESLCPSISGNVCCTETQFETLRAQVQQAIPFLVGCPACLRNFLNLFCE 1492 (1991)
Q Consensus 1421 ~~~~l~c~~~~~~~~~~~~~-~~~l~~~Cp~~~~~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~~N~~~~~C~ 1492 (1991)
++|+.+|+....|++.+. ..++.++|+ .|.+.-.+-.. + .-+.++-|=+.+++.|.+--|.
T Consensus 631 --ekla~a~~l~~~~~~~~i~i~knlr~c~-----dch~~~k~~s~---~-~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 631 --EKLAIAFGLINTSEWTPLQITQSHRICK-----DCHKVIKFIAL---V-TKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred --HHHHHHhhCccCCCCCeEEEecCCEECC-----CchhhHHHHhh---h-cceEEEEecCCccccCCCCccc
Confidence 789999999888887666 488899999 89988764322 2 2266888999999999998883
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=788.76 Aligned_cols=612 Identities=26% Similarity=0.420 Sum_probs=581.5
Q ss_pred CCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 040435 768 ICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNS 847 (1991)
Q Consensus 768 ~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~na 847 (1991)
..++..++|.+|.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 040435 848 VLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTM 926 (1991)
Q Consensus 848 Li~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~ 926 (1991)
||++|++ |+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|... |+.||.+||+++|++|+..+++..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhh
Confidence 9999999 99999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 040435 927 GRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNE 1006 (1991)
Q Consensus 927 a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~ 1006 (1991)
++++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|...|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhh
Q 040435 1007 VDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFT 1086 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~ 1086 (1991)
||..||+++|.+|++.++++.|+++|..+.+.|+.||..+||+||.+|+++|++++|.++|++|.+||+++||+||.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHH
Q 040435 1087 LCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRK 1166 (1991)
Q Consensus 1087 ~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~ 1166 (1991)
+.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 040435 1167 AFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA 1246 (1991)
Q Consensus 1167 lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~ 1246 (1991)
+|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|.++.|.+++..|.+ .|+.++
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCcc
Confidence 99999999999999999999999999999999999986 6999999999999999999999999999999975 699999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCchHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL--EAQNSAGYLLASSM 1324 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel--~P~~~~~yvlL~~l 1324 (1991)
..++++||++|+|+|++++|.++|++| .||..+|++|+.+|.++|+.++|.+++++|.+. .| +..+|..+...
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHH
Confidence 999999999999999999999999998 479999999999999999999999999999884 45 45668889999
Q ss_pred HHhCCCchhHHHHHHHHH-HcCCcccCcEEEEEEcC--------eEeEEEcCCCCCCCCchhHHHHHHHHhhccccc
Q 040435 1325 YAAGGLWVESSGTRLLAK-ERGVKVVAGNSLVHVDN--------KACKFIAGEKAQSHPRGSEVILLACLVTAEKTD 1392 (1991)
Q Consensus 1325 ya~~G~~~ea~~vr~~m~-~~gi~k~~g~s~i~v~~--------~~~~F~~~d~~~~~p~~~~i~~~~~~l~~~~~~ 1392 (1991)
|++.|+++++.++...|+ ++|++|...++.+.|+. ++..|+..++..| +...|..++.+|..+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p-----d~~~~~aLl~ac~~~ 670 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP-----DPAVWGALLNACRIH 670 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHc
Confidence 999999999999999998 89999999999988873 2344444443322 334566666666543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-60 Score=639.09 Aligned_cols=526 Identities=15% Similarity=0.163 Sum_probs=478.9
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHhhcCCCCh-----HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 040435 737 YESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDS-----VSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILV 811 (1991)
Q Consensus 737 ~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~-----~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~ 811 (1991)
-.++...+..++..|+++|++++|+++|++|+.++. ..++.++.+|.+.|..++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356677888999999999999999999999987654 4566777889999999999999999974 9999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcC
Q 040435 812 LVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMC----ERDVISWSVMIGGYVQSA 886 (1991)
Q Consensus 812 ~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~----~~d~~syn~LI~a~~~~G 886 (1991)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|++ |+++.|.++|++|. .||+++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999 99999999999996 589999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 040435 887 EAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIY--RGLGCDLFVGNSLIDMYAKCKDTDSAFK 964 (1991)
Q Consensus 887 ~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k--~g~~pd~~v~naLI~~y~k~G~~e~A~~ 964 (1991)
++++|+++|.+|.+. |+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 522 ~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 522 QVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999987 8999999999999999999999999999999987 6799999999999999999999999999
Q ss_pred HhccCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcC
Q 040435 965 VFSEMPQ----KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAF 1040 (1991)
Q Consensus 965 lf~~m~~----~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~ 1040 (1991)
+|+.|.+ ++.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|..|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999985 577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHHhcC----CCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1041 ESNELVLNSLIDGYSKCHLVELAWKLFNDVK----KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINL 1116 (1991)
Q Consensus 1041 ~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~----~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~l 1116 (1991)
.|+..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999996 599999999999999999999999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHH----HhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCH
Q 040435 1117 LEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMY----AKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLA 1192 (1991)
Q Consensus 1117 L~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y----~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~ 1192 (1991)
|.+|++.|+++.|.++|..|.+.|+.||..+|++|+.+| .+++...++...|+.+...+...|+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------ 828 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------ 828 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------
Confidence 999999999999999999999999999999999999874 3444444444444443333334444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1193 HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1193 ~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
++|+.+|++|++.|+.||..||+.+|.++...+..+.+..+++.|. ..+..|+..+|++||+++++. .++|..++++
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 5699999999999999999999999977777788888888777774 235677789999999988543 4789999999
Q ss_pred Ccc-CCCCCHH
Q 040435 1273 MPD-NLKATAS 1282 (1991)
Q Consensus 1273 m~~-~~~pd~~ 1282 (1991)
|.. ++.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 987 4677653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-60 Score=639.91 Aligned_cols=467 Identities=24% Similarity=0.373 Sum_probs=424.0
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 040435 769 CRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAG-FEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNS 847 (1991)
Q Consensus 769 ~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~g-i~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~na 847 (1991)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 040435 848 VLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTM 926 (1991)
Q Consensus 848 Li~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~ 926 (1991)
|+.+|++ |+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999 99999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 040435 927 GRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNE 1006 (1991)
Q Consensus 927 a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~ 1006 (1991)
|+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhh
Q 040435 1007 VDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFT 1086 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~ 1086 (1991)
||..||++++.+|++.|.++.|+++|+.|.+.|+.+|..++|+||++|+++|++++|.++|++|.+||+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHH-hccccchhHHHHHHHHHHhcCCHHHHH
Q 040435 1087 LCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIR-RCLAEEVAVGTAVVDMYAKCGAIEASR 1165 (1991)
Q Consensus 1087 ~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k-~g~~~d~~v~naLI~~y~k~G~~e~A~ 1165 (1991)
++|+.++|+++|++|.+.|+.||..||+++|.+|++.|.+++|.+++..|.+ .|+.|+..+|+.+|++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 588888878877777777777777777
Q ss_pred HHHHhcc-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1166 KAFDQIS-RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1166 ~lf~~m~-~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
++|++|. +|+..+|++|+.+|..+|+.+.|..++++|.+ +.|+ ..+|..++..|++.|++++|.++++.|.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7776664 35666666666666666666666666665543 3342 3455555555666666666666665553
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-55 Score=593.42 Aligned_cols=529 Identities=11% Similarity=0.114 Sum_probs=481.4
Q ss_pred CCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHH
Q 040435 705 NDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGY-ESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGH 782 (1991)
Q Consensus 705 ~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~-~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~ 782 (1991)
++...|..++..|.+.+ +..+.+++..|.+.|+ .++..+++.++.+|.+.|.+++|.++|+.|+.||..+||.||.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35556777777777666 7889999999999996 577888899999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHH
Q 040435 783 LDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECAR 861 (1991)
Q Consensus 783 ~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~ 861 (1991)
++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.|+.||..+|++||.+|++ |++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 040435 862 KLFDEMC----ERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSG-FKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIY 936 (1991)
Q Consensus 862 ~vf~~m~----~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~-~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k 936 (1991)
++|++|. .||.++||.||.+|++.|++++|+++|.+|... .|+.||..||+++|.+|++.|+++.|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999993 589999999999999999999999999999863 37999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHH
Q 040435 937 RGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ----KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITL 1012 (1991)
Q Consensus 937 ~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~----~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~ 1012 (1991)
.|+.|+..+|++||.+|++.|++++|.++|++|.+ ||.++|++||.+|++.|+.++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999984 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC----CchhhhhHHHHhhhhc
Q 040435 1013 VNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK----PDVVLWSTMIAGFTLC 1088 (1991)
Q Consensus 1013 ~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~----~d~~syn~LI~~y~~~ 1088 (1991)
+++|.+|++.|++++|.++|..|.+.|+.||..+||+||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999974 9999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 040435 1089 GRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAF 1168 (1991)
Q Consensus 1089 g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf 1168 (1991)
|+.++|.++|.+|.+.|+.||..+|++++..|.+ .++++..+...+.... . ...+...+..+.|..+|
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~---------~-g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFD---------S-GRPQIENKWTSWALMVY 835 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhh---------c-cccccccchHHHHHHHH
Confidence 9999999999999999999999999999977653 3444443333222111 0 01111223456799999
Q ss_pred HhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 040435 1169 DQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVE 1244 (1991)
Q Consensus 1169 ~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~ 1244 (1991)
++|.+ ||.++|+.++.+++..+..+.+..++++|...+..|+..+|++||.+|++. .++|..+|++|.+ .|+.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~-~Gi~ 912 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS-LGVV 912 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH-cCCC
Confidence 99985 899999999999889999999999999999889999999999999998543 4789999999965 6999
Q ss_pred CCHH
Q 040435 1245 PALE 1248 (1991)
Q Consensus 1245 P~~~ 1248 (1991)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 9875
|
|
| >cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-47 Score=439.69 Aligned_cols=255 Identities=54% Similarity=0.960 Sum_probs=231.8
Q ss_pred ceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHH
Q 040435 367 YHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQL 446 (1991)
Q Consensus 367 ~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l 446 (1991)
+|||+++||+++++|++.|++.|+++|.+++|||+||+++...|+.||..++..+++|++..++++.+.+......++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999988999999999999999899999999999999999999999999999999999999999888778888999
Q ss_pred hhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeE
Q 040435 447 ESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNG 526 (1991)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~a 526 (1991)
++.. ...+.+.++++++|+++|+||++|++||+++||||||+|+||++||++||++|++|+++|
T Consensus 81 ~~~~----------------~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~a 144 (257)
T cd06429 81 ESEA----------------DTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAG 144 (257)
T ss_pred hccc----------------cccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEE
Confidence 7544 123455667889999999999999999999999999999999999999999999999999
Q ss_pred eeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhc--cccccCCCCchhh
Q 040435 527 AVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDR--TLWKLGTLPPGLI 604 (1991)
Q Consensus 527 aV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~--~~~~~~dqd~~n~ 604 (1991)
||+| ||||||||+||++||++++++++..|++.+.+. ..++++|||++|+
T Consensus 145 av~d----------------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~ 196 (257)
T cd06429 145 AVET----------------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLI 196 (257)
T ss_pred EEhh----------------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHH
Confidence 9987 799999999999999999999999999877653 4478899999999
Q ss_pred hhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhh
Q 040435 605 TFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVI 665 (1991)
Q Consensus 605 ~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~ 665 (1991)
+|.++++.||++||+++++++.......+.+++||||+|+.|||+..+..+++++|++|+.
T Consensus 197 ~~~~~~~~L~~~wN~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 197 VFYGLTSPLDPSWHVRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred HccCeeEECChHHcccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 9999999999999999888876544455679999999999999999999999999999963
|
A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. |
| >TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=444.03 Aligned_cols=267 Identities=19% Similarity=0.276 Sum_probs=231.1
Q ss_pred chHHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCC-CceEEE
Q 040435 1716 VVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPF-YRIEQL 1794 (1991)
Q Consensus 1716 ~~~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf-~R~~qv 1794 (1991)
+++.+++++|++||.+|+||||++|+++++++++||+|+.++++||||++|||+|+||+++||+|||++|||| ||++|+
T Consensus 38 ~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~gp~~~r~~Q~ 117 (1145)
T TIGR00918 38 WLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKIGEEAMFTPQL 117 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCChHHHHHHHHHhccCCccCcceEE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccccccCCccccccccccccC-------------C--CCCCc-----
Q 040435 1795 ILATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPL-------------G--EDCAS----- 1854 (1991)
Q Consensus 1795 ii~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~~~~~~~~~tl~DiC~kp~-------------~--~~C~i----- 1854 (1991)
||+++.. ++.|||+++.|.|++++++.|++++|...++++||+|+||||. + ..|+|
T Consensus 118 ii~~~~~----~g~~vl~~~~L~~~~~~~~~i~~~~v~~~~~~~~l~diC~~p~~p~~~~~~~~~~~~~l~~C~iitpld 193 (1145)
T TIGR00918 118 LIQTPHQ----EGANVLTPEALLQHLDSALKASRVHVYLYNRQWGLEHLCYKSGEPSTEGGYIEQILEKLIPCLIITPLD 193 (1145)
T ss_pred EEECCCC----CCCCcCCHHHHHHHHHHHHHHHHhhccccCCccchhhhccCCCCcccccchhhhcccCCCCcEEecccc
Confidence 9998532 3449999999999999999999999877778899999999998 2 36999
Q ss_pred --------ccHHHHhhcCcC----CCCCcc--------------Ccccccc-----------cccccCCCcccccc----
Q 040435 1855 --------QSVLQYFKMDPE----NYDSYG--------------GIEHAEY-----------CFQHYASSDTCLSA---- 1893 (1991)
Q Consensus 1855 --------~S~l~yf~~~~~----~~~~~~--------------~~~~~~~-----------c~~~~~~~~~c~~~---- 1893 (1991)
+|+.+||+++++ ++++.. |.+++.. |.++|. .+|+++
T Consensus 194 cfweg~kl~s~~~y~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~y~~~pC~~~~d--~~C~~~apn~ 271 (1145)
T TIGR00918 194 CFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQVESWEEMLKKAAVGQGYMERPCLNPAD--PDCPDTAPNK 271 (1145)
T ss_pred hhhccccccCcccccCCCcccccccCCHHHHHHHhhhcccchHHHHHHHHHhcccccccCCCcCCCCC--CCCCCccccc
Confidence 999999998887 665432 7778877 976432 469999
Q ss_pred -CCCCC--------------------CcccccCCcc---CCCcccccEEEEEEEecc---------------CCCcch-H
Q 040435 1894 -FKAPL--------------------DPSTVLGGFS---GNNYSEASAFIITYPVNN---------------AIDETS-K 1933 (1991)
Q Consensus 1894 -~g~pv--------------------~~~~~lGG~~---~~~~~~A~A~~lty~l~n---------------~~~~~~-~ 1933 (1991)
+|+|+ .|.++|||++ ++++.+|+|+++||+|+| +.+.++ +
T Consensus 272 ~~~~p~~~~~~l~ggc~g~~~~~m~w~~~lilGG~~~~~~~~i~~A~Al~~t~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 351 (1145)
T TIGR00918 272 NSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGKLLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGWNEEK 351 (1145)
T ss_pred ccCCCCcHHHHhcCccchhhhhhccCCcceEecccccCCCCCEeeeeeEEEEEEecChHHHHHHhhccccccccCcchhH
Confidence 99999 8999999997 678999999999999988 333221 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEecccHHHHHhhhhcccccEEEEeC
Q 040435 1934 ENRKAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTIVVSL 1991 (1991)
Q Consensus 1934 ~~~~a~~WE~~f~~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~s~~dv~~~~iS~ 1991 (1991)
..+.+++||++|.++|++.. ....+..+.+++++|++|||++.+++++++|+|||
T Consensus 352 a~~va~~We~~F~~~v~~~~---~~~~~~~~~~fss~SL~del~~~s~~~~~~~~is~ 406 (1145)
T TIGR00918 352 AAAVLEAWQRNFSEEVQQSL---PKNSSQKILVFSSTTLDDILKKFSDVSAIRIVSGY 406 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHhc---ccccCCceEEEecccHHHHHHHhhhhhHHHHHHHH
Confidence 22458999999999999852 12345567667779999999999999999998764
|
|
| >PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=367.97 Aligned_cols=253 Identities=17% Similarity=0.218 Sum_probs=188.7
Q ss_pred CCcceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhh
Q 040435 364 PSLYHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCS 441 (1991)
Q Consensus 364 ~~~~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~ 441 (1991)
+..+||++++|+ +.+++|+|.|++.|+++ ..++|||++|+++.+..+
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~------------------------------ 71 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQ------------------------------ 71 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHH------------------------------
Confidence 367999999995 66999999999999765 479999999987755544
Q ss_pred HHHHHhhcc---ceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhc
Q 040435 442 VLRQLESAR---LKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWS 517 (1991)
Q Consensus 442 ~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~ 517 (1991)
.|+++.... +..+.++...+.. +....++|..+|+||++|++||+ +|||||||+|+||++||++||+
T Consensus 72 ~l~~l~~~~~~~i~~~~id~~~~~~---------~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~ 142 (334)
T PRK15171 72 RFSALAKQYNTRINIYLINCERLKS---------LPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELID 142 (334)
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHhC---------CcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHh
Confidence 444543332 2223322211111 12345899999999999999995 9999999999999999999999
Q ss_pred cCCCCCeeEee-ccchhhh-ccccccccCCCccccCCCCC-CCcccccceeEeehHHHHHhhHHHHHHHHHHhchhcccc
Q 040435 518 VDLHGMVNGAV-ETCKESF-HRFDKYLNFSNPLISENFSP-NACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLW 594 (1991)
Q Consensus 518 ~dl~~~~~aaV-~d~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~ 594 (1991)
+|+++..+||| .+....+ .+.... .+.++ ...|||||||||||++||++++++++.+++........+
T Consensus 143 ~dl~~~~~aav~~d~~~~~~~~~~~~---------l~~~~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~ 213 (334)
T PRK15171 143 LDFAENEIAAVVAEGDAEWWSKRAQS---------LQTPGLASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRI 213 (334)
T ss_pred ccCCCCeEEEEEeccchhHHHHHHHh---------cCCccccccceecceEEEcHHHHHHhhHHHHHHHHHhccccccce
Confidence 99996655655 4532211 111111 11222 245999999999999999999999999998765422346
Q ss_pred ccCCCCchhhhhccccccccccccccccCCCcccc----ccccCCceEeecccCCCccccccccccccccchhhhh
Q 040435 595 KLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALN----LTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVIL 666 (1991)
Q Consensus 595 ~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~~~~----~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~ 666 (1991)
.++|||++|++|.++++.||++||++ .+...... .....+|+||||+|+.|||+.++.++++++|++|...
T Consensus 214 ~~~DQDiLN~~~~~~~~~L~~~wN~~-~~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~~ 288 (334)
T PRK15171 214 THLDQDVLNILLAGKVKFIDAKYNTQ-FSLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKEA 288 (334)
T ss_pred eecChhHHHHHHcCCeEECCHhhCCc-cchhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHhc
Confidence 78999999999999999999999987 23222111 1123578999999999999989999999999998765
|
|
| >cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=344.83 Aligned_cols=260 Identities=19% Similarity=0.245 Sum_probs=187.3
Q ss_pred EEEEccc-chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHHh
Q 040435 369 YAIFSDN-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLE 447 (1991)
Q Consensus 369 i~~~~Dn-~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~ 447 (1991)
|+++.+| +..++|+|+|++.|+.. .++|||++|+++.+.++.+.......+..|.+..++++.
T Consensus 5 iv~~~~~y~~~~~~~i~Sil~n~~~--~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~-------------- 68 (280)
T cd06431 5 IVCAGYNASRDVVTLVKSVLFYRRN--PLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK-------------- 68 (280)
T ss_pred EEEccCCcHHHHHHHHHHHHHcCCC--CEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh--------------
Confidence 4455567 67899999999999854 499999999999888887776655555555554332211
Q ss_pred hccceEEEecCCCCCCCcCCcCCcccCCCCcch-hhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhcc--CCCCC
Q 040435 448 SARLKEYYFKANHPSSLSAGSDNLKYRNPKYLS-MLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWSV--DLHGM 523 (1991)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~~--dl~~~ 523 (1991)
....+.++ .++| .++|+||++|++||+ +|||||||+|+||++||++||++ |+.+.
T Consensus 69 ---------------~~~~~~~~------~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~ 127 (280)
T cd06431 69 ---------------SRVSWIPN------KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQ 127 (280)
T ss_pred ---------------hhhccCcc------cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCC
Confidence 00000011 2344 358899999999995 99999999999999999999998 67655
Q ss_pred -eeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchh-ccccccCCCCc
Q 040435 524 -VNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANED-RTLWKLGTLPP 601 (1991)
Q Consensus 524 -~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~-~~~~~~~dqd~ 601 (1991)
++|||++....+...... ....++..+.||||||||+||++||++++++++..+.+.... .....++|||+
T Consensus 128 ~~~a~v~~~~~~~~~~~~~-------~~~~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDi 200 (280)
T cd06431 128 QVLGLVENQSDWYLGNLWK-------NHRPWPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDI 200 (280)
T ss_pred cEEEEeccchhhhhhhhhh-------ccCCCcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHH
Confidence 777777643221111000 011122234599999999999999999999987655544321 22367899999
Q ss_pred hhhhhccc---cccccccccccccCCCcccc--ccccCCceEeecccCCCccccccc-cccccccchhhhhhhhhccc
Q 040435 602 GLITFYNL---TYPLDRSWHVLGLGYDPALN--LTQIDNGAVVHYNGNNKPWLDLAV-SKYKPYWSKYVILWSLRLRT 673 (1991)
Q Consensus 602 ~n~~f~~~---~~~L~~~wN~~~~~~~~~~~--~~~~~n~~IiHY~g~~KPW~~~a~-~~~~~~W~~yv~~d~p~l~~ 673 (1991)
+|++|.++ ++.||++||++. +...... .....+|+||||+|+.|||..... .+++++|.+|.+.+-+.|+.
T Consensus 201 LN~v~~~~~~~~~~L~~~wN~~~-~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (280)
T cd06431 201 FNAVIKQNPFLVYQLPCAWNVQL-SDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRR 277 (280)
T ss_pred HHHHHcCCcceeEECCCcccccc-CccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhh
Confidence 99999999 899999999983 3332221 122468999999999999987776 89999999999888776653
|
The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-29 Score=350.10 Aligned_cols=668 Identities=11% Similarity=-0.001 Sum_probs=554.2
Q ss_pred ccchhhhhhhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCC
Q 040435 659 YWSKYVILWSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGY 737 (1991)
Q Consensus 659 ~W~~yv~~d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~ 737 (1991)
.|.+....++.....+..++..+...|++++|...+.++.+.. |.++.............+ ...+...+..+++.+-
T Consensus 215 ~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 292 (899)
T TIGR02917 215 AYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA--PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292 (899)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3444555555566667778888899999999999999988755 333332211111122223 6778888888877653
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040435 738 ESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVI 814 (1991)
Q Consensus 738 ~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL 814 (1991)
. +...+..+...|.+.|++++|...|+.+.. .+...+..+...+.+.|++++|+..++.+.... +.+...+..+.
T Consensus 293 ~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 370 (899)
T TIGR02917 293 E-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLG 370 (899)
T ss_pred C-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 2 233444556678899999999999988643 356778888899999999999999999998754 44677888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHH
Q 040435 815 QACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCE---RDVISWSVMIGGYVQSAEAFS 890 (1991)
Q Consensus 815 ~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~~~e 890 (1991)
..+...|++++|.+++..+.+... .+...+..+...|.. |+.++|.+.|+.+.+ .....+..++..+.+.|++++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHH
Confidence 999999999999999999987653 345566667777777 999999999998743 234567778889999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCC
Q 040435 891 GLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMP 970 (1991)
Q Consensus 891 Al~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~ 970 (1991)
|++++..+... ...+..++..+...+...|+.+.|.+.+..+++.. +.+...+..+..+|.+.|++++|.+.|+.+.
T Consensus 450 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 450 ALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999874 45567789999999999999999999999998764 3456678889999999999999999999885
Q ss_pred C---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhh
Q 040435 971 Q---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVL 1047 (1991)
Q Consensus 971 ~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~ 1047 (1991)
+ .+..++..+...+.+.|+.++|...|.++...+ ..+...+..+...+...|+++++..++..+.+.. +.+..++
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 4 467889999999999999999999999997643 3345667788889999999999999999987654 4567889
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcc
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVAT 1124 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g 1124 (1991)
..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+.. ..+..++..+...+...|
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998864 456778999999999999999999999998742 335678888899999999
Q ss_pred ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1125 ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1125 ~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
+.+.|..++..+.+.. +.+...+..+...|.+.|++++|.+.|+.+.. |+..++..++..+.+.|+.++|.+.++++
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999998876 45667788899999999999999999998864 66678888999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH
Q 040435 1203 KLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS 1282 (1991)
Q Consensus 1203 ~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~ 1282 (1991)
.+.. +.+...+..+...|...|+.++|.++|+.+++. -.++...+..+..++.+.|+ .+|+++++++.+..+.+..
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH
Confidence 8754 456778888889999999999999999999863 23467889999999999999 8899999998775566788
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+|..+...+...|++++|...++++++++|.++..+..++.+|.+.|++++|..+.+.|.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999877664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-28 Score=344.55 Aligned_cols=664 Identities=10% Similarity=0.006 Sum_probs=375.3
Q ss_pred hhhhhhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCch
Q 040435 663 YVILWSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYESFT 741 (1991)
Q Consensus 663 yv~~d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~~d~ 741 (1991)
.+..++.....+..+...+...|++++|+.++.++.... |++...+..+...+...+ ...+...+...++.. +.+.
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 227 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNP 227 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCH
Confidence 333333334444445555556666666666666655432 333333333333333333 445555555555433 2344
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhhcCC--C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 040435 742 SIGNALMDFYMKWRFPDSAVAVFDDCIC--R-DSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPN-NSILVLVIQAC 817 (1991)
Q Consensus 742 ~~~n~Li~~y~k~G~~~~A~~lfd~m~~--~-d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd-~~ty~~lL~a~ 817 (1991)
.++..++..+...|++++|...++.+.+ | +...+......+.+.|++++|+..|+++.+.+ |+ ...+..+...+
T Consensus 228 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~ 305 (899)
T TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASE 305 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHH
Confidence 5555556666666666666666655432 1 11222222223344555555555555554432 22 11222233334
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHH
Q 040435 818 RCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCE---RDVISWSVMIGGYVQSAEAFSGLR 893 (1991)
Q Consensus 818 ~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~~~eAl~ 893 (1991)
...|+++.|...+..+++... .+......+...+.+ |++++|...++.+.. .+...|+.+...+.+.|++++|.+
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555555555555544431 122333334444444 555555555554421 234445555555555555555555
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHH----------------------------------HHHHccCChHHHHHHHHHHHHcC
Q 040435 894 LFRQMVSGFKNEP-DGQSLVSVL----------------------------------KACTNLRDLTMGRMVHGLVIYRG 938 (1991)
Q Consensus 894 lf~~M~~~~gv~P-d~~T~~~lL----------------------------------~a~~~~g~~~~a~~l~~~m~k~g 938 (1991)
+|.++.+. .| +...+..+. ..+.+.|+.+.|..++..+.+.
T Consensus 385 ~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 385 YLAKATEL---DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 55554432 12 222333333 3444444555555554444432
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 040435 939 LGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNI 1015 (1991)
Q Consensus 939 ~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~l 1015 (1991)
.+.+..++..+...|.+.|++++|...|+++.+ .+...+..+...+...|++++|...|+++.... ..+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 223444555555555555666665555555432 234445555555555666666666666554432 1234445555
Q ss_pred HHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChH
Q 040435 1016 LQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPR 1092 (1991)
Q Consensus 1016 L~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~e 1092 (1991)
...+...|+.+++...+..+.+.+ +.+...+..++..|.+.|+.++|..+++.+.+ .+...|..+...|.+.|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555666666666666555543 23344555566666666666666666666543 34556666666666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040435 1093 EAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS 1172 (1991)
Q Consensus 1093 eAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~ 1172 (1991)
+|+..|+++.+.. ..+...+..+...+...|+.+.|..++..+.+.. +.+...+..+...+.+.|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776666532 2234455556666666677777766666666543 3345566666677777777777777777665
Q ss_pred C---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHH
Q 040435 1173 R---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEH 1249 (1991)
Q Consensus 1173 ~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~ 1249 (1991)
+ .+...|..+...|...|++++|++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+. ...+...
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~ 772 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVL 772 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 3 34556666777777777777777777777664 344456666777777777777777777777653 2335667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+..+..+|.+.|++++|.+.++++.+..+++..++..+...+...|+ ..|...+++++++.|+++..+..++.+|...|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 77777778888888888888887776556677778888888887777 66888888888888888777777888888888
Q ss_pred CchhHHHHHHHHHHcC
Q 040435 1330 LWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1330 ~~~ea~~vr~~m~~~g 1345 (1991)
++++|....+.+.+.+
T Consensus 852 ~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 852 EADRALPLLRKAVNIA 867 (899)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 8888887766555443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=327.61 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=188.0
Q ss_pred cceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 366 LYHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 366 ~~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
.++||++.|+ +.+++|+|.|+|.|++. ..+.||+++|+++.+.++ .|
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~------------------------------~l 50 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKK------------------------------KL 50 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHH------------------------------HH
Confidence 4799999996 66999999999999986 469999999997755544 56
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccC-CCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYR-NPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
+++.+.......+...+...+. .+. .+++||+++|+||++|++||+.||+||||+|+||.|||++||.+++++
T Consensus 51 ~~~~~~f~~~i~~~~id~~~~~------~~~~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~ 124 (325)
T COG1442 51 NETAEPFKSFIVLEVIDIEPFL------DYPPFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEE 124 (325)
T ss_pred HHHHHhhccceeeEEEechhhh------cccccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCc
Confidence 5554443333222222222222 222 557999999999999999999999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCch
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPG 602 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~ 602 (1991)
+.+|||.|....+.... ..........+.|||||||++|++.||++++++++.++.+..++ ...++|||++
T Consensus 125 ~~~aaV~D~~~~~~~~~-------~~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~--~~~~~DQdiL 195 (325)
T COG1442 125 YYLAAVRDVFSHYMKEG-------ALRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKEN--DLLYPDQDIL 195 (325)
T ss_pred ceEEEEeehhhhhhhhh-------hhHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhcccc--ccCCccccHH
Confidence 99999999654322110 00011112345699999999999999999999999999877664 4788999999
Q ss_pred hhhhccccccccccccccccCCCcccc----ccccCCceEeecccCCCccccccccccc
Q 040435 603 LITFYNLTYPLDRSWHVLGLGYDPALN----LTQIDNGAVVHYNGNNKPWLDLAVSKYK 657 (1991)
Q Consensus 603 n~~f~~~~~~L~~~wN~~~~~~~~~~~----~~~~~n~~IiHY~g~~KPW~~~a~~~~~ 657 (1991)
|++|.+++..||++||++. +...... ...-.++.|+||+|+.|||+.++....+
T Consensus 196 N~i~~~~~~~L~~~YN~~~-~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~ 253 (325)
T COG1442 196 NMIFEDRVLELPIRYNAIP-YIDSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPR 253 (325)
T ss_pred HHHHHhhhhccCcccceee-hhhhccchhhhccCCCCceEEEecCCCCCCcCccccccH
Confidence 9999999999999999983 3333222 2234577899999999999988755543
|
|
| >cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=318.39 Aligned_cols=236 Identities=20% Similarity=0.274 Sum_probs=172.1
Q ss_pred ceEEEEcc--c-chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 367 YHYAIFSD--N-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 367 ~hi~~~~D--n-~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
|||++.++ | +.+++|++.|+++|++. .++|||++++++....+ .|
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~------------------------------~L 48 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKA------------------------------AL 48 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHH------------------------------HH
Confidence 57876665 3 66999999999999876 59999999887755444 44
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCC-CCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRN-PKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
+.+.........|...+..... .... .++++..+|+||++|+++|+++||||||+|+||++||++||++++++
T Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~ 122 (246)
T cd00505 49 DNLRKLYNFNYELIPVDILDSV------DSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGG 122 (246)
T ss_pred HHHHhccCceEEEEeccccCcc------hhhhhcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCC
Confidence 4443222222222222211111 1111 25778899999999999999999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCch
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPG 602 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~ 602 (1991)
+.+|||+|+...... .+.. ...++....+||||||||+|+++||++++.++...+...... ...++|||++
T Consensus 123 ~~~aav~d~~~~~~~--~~~~-----~~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~--~~~~~DQd~L 193 (246)
T cd00505 123 QELAAAPDPGDRREG--KYYR-----QKRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLS--SLSGGDQDLL 193 (246)
T ss_pred CeEEEccCchhhhcc--chhh-----cccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhcc--cCccCCcHHH
Confidence 999999997542110 0000 112344556799999999999999987777776665544332 3678999999
Q ss_pred hhhhccc---cccccccccccccCCCcccc--ccccCCceEeecccCCCccc
Q 040435 603 LITFYNL---TYPLDRSWHVLGLGYDPALN--LTQIDNGAVVHYNGNNKPWL 649 (1991)
Q Consensus 603 n~~f~~~---~~~L~~~wN~~~~~~~~~~~--~~~~~n~~IiHY~g~~KPW~ 649 (1991)
|.+|.++ ++.||++||++..++..... ....++++||||+|+.|||.
T Consensus 194 N~~~~~~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 194 NTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred HHHHhcCCCeEEECCCeeeEEecCccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 9999998 99999999998654433211 23467899999999999995
|
Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. |
| >cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=316.47 Aligned_cols=237 Identities=20% Similarity=0.229 Sum_probs=179.9
Q ss_pred ceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHH
Q 040435 367 YHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLR 444 (1991)
Q Consensus 367 ~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~ 444 (1991)
+||++++|. ..+++|++.|+++|++. ..++|||++++++....+ .|+
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~------------------------------~L~ 49 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKK------------------------------KLK 49 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHH------------------------------HHH
Confidence 699999996 66999999999999986 469999999887655544 444
Q ss_pred HHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCe
Q 040435 445 QLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMV 524 (1991)
Q Consensus 445 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~ 524 (1991)
++.......+.+...+..... .... ..++++..+|+||++|+++|+++||||||+|+||++||++||++|++++.
T Consensus 50 ~~~~~~~~~i~~~~i~~~~~~----~~~~-~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~ 124 (248)
T cd04194 50 ELLKKYNSSIEFIKIDNDDFK----FFPA-TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNL 124 (248)
T ss_pred HHHHhcCCeEEEEEcCHHHHh----cCCc-ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCE
Confidence 443221122222211111010 0000 34578889999999999999999999999999999999999999999999
Q ss_pred eEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhh
Q 040435 525 NGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLI 604 (1991)
Q Consensus 525 ~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~ 604 (1991)
+|||+|+......... .........+|||||||++|+++||+.++++++.+|+..+.. .+.++|||++|.
T Consensus 125 ~aa~~d~~~~~~~~~~--------~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~--~~~~~DQd~LN~ 194 (248)
T cd04194 125 LAAVRDPFIEQEKKRK--------RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGG--RLIYPDQDILNA 194 (248)
T ss_pred EEEEecccHHHHHHHH--------hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCC--ceeeCChHHHHH
Confidence 9999997654322111 112344567799999999999999999999999999988754 367899999999
Q ss_pred hhccccccccccccccccCCCccc--------cccccCCceEeecccCCCccc
Q 040435 605 TFYNLTYPLDRSWHVLGLGYDPAL--------NLTQIDNGAVVHYNGNNKPWL 649 (1991)
Q Consensus 605 ~f~~~~~~L~~~wN~~~~~~~~~~--------~~~~~~n~~IiHY~g~~KPW~ 649 (1991)
+|.++++.||.+||++...+.... .....++++||||+|..|||.
T Consensus 195 ~~~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~ 247 (248)
T cd04194 195 VLKDKILYLPPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWN 247 (248)
T ss_pred HHhCCeEEcCcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 999999999999999854333221 123467899999999999995
|
The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys |
| >cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=305.74 Aligned_cols=235 Identities=14% Similarity=0.188 Sum_probs=164.2
Q ss_pred ceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHH
Q 040435 367 YHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLR 444 (1991)
Q Consensus 367 ~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~ 444 (1991)
+|+|+++-+ +.-+-|+|+|++.|+. .+++|||++|+.. ++++.+.++
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~-----------------------------~~~~~~~l~ 49 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQL-----------------------------KQSFKEKLD 49 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCcc-----------------------------CHHHHHHHH
Confidence 578876653 5578999999999985 4699999998732 344555778
Q ss_pred HHhhccceEEEecCCCCCCCcCCcCCccc-CCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhcc--CCC
Q 040435 445 QLESARLKEYYFKANHPSSLSAGSDNLKY-RNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSV--DLH 521 (1991)
Q Consensus 445 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~--dl~ 521 (1991)
+|.......+.+....+. . |..++ .+++.+++++|+||++|++||++|||||||+|+||.+||++||++ +++
T Consensus 50 ~~~~~~~~~i~~~i~~I~-~----P~~~~~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~ 124 (304)
T cd06430 50 DWPELIDRKFNYTLHPIT-F----PSGNAAEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFN 124 (304)
T ss_pred HHHHhccceeeeEEEEEe-c----CccchhhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcC
Confidence 886654444433322221 1 11111 123456679999999999999999999999999999999999999 999
Q ss_pred CC-eeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHH-----------hhHHHHHHHHHHhch
Q 040435 522 GM-VNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRK-----------RNITGIYHYWQDANE 589 (1991)
Q Consensus 522 ~~-~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~-----------~~~~~~~~~~~~~~~ 589 (1991)
++ ++|+|++.. .....+......+++ ....|||||||||||++||+ .+|++++..+++++.
T Consensus 125 ~~~~aA~v~e~~-~~~~~~~~~~~~~~~------~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (304)
T cd06430 125 STQLAAMAPEHE-EPNIGWYNRFARHPY------YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYK 197 (304)
T ss_pred CCeEEEEEeccc-ccchhhhhhhcccCc------ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcc
Confidence 87 455555421 111111111111221 12247999999999999999 788999988887766
Q ss_pred hccccccCCCCchhhhhccc---cccccccccccccCC--CccccccccCCceEeecccCCC
Q 040435 590 DRTLWKLGTLPPGLITFYNL---TYPLDRSWHVLGLGY--DPALNLTQIDNGAVVHYNGNNK 646 (1991)
Q Consensus 590 ~~~~~~~~dqd~~n~~f~~~---~~~L~~~wN~~~~~~--~~~~~~~~~~n~~IiHY~g~~K 646 (1991)
.. ..++|||++|++|.++ ++.||++||++.... .......+...++|||++++.|
T Consensus 198 ~~--l~~~DQDiLN~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~ 257 (304)
T cd06430 198 LK--ITWGDQDLINIIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY 257 (304)
T ss_pred cC--CCCCCHHHHHHHHcCCCCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC
Confidence 33 6789999999999998 899999999764111 1122223446789999998765
|
A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. |
| >PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-29 Score=292.79 Aligned_cols=245 Identities=22% Similarity=0.355 Sum_probs=165.3
Q ss_pred eEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHH
Q 040435 368 HYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQ 445 (1991)
Q Consensus 368 hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~ 445 (1991)
||++++|. +.++.|+++|+++|++.+..++|||++++.+.+..+.+-........
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~----------------------- 57 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIE----------------------- 57 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCT-----------------------
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccc-----------------------
Confidence 89999995 66999999999999998778999999999887766643332221110
Q ss_pred HhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCee
Q 040435 446 LESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVN 525 (1991)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~ 525 (1991)
.....+..... .... ........+++..+|+||+++++||++|||||||+|+||.+||++||+++++++.+
T Consensus 58 -----~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~ 128 (250)
T PF01501_consen 58 -----IEPIEFPDISM--LEEF--QFNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYL 128 (250)
T ss_dssp -----TECEEETSGGH--HH----TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSE
T ss_pred -----eeeeccchHHh--hhhh--hhcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhc
Confidence 01111110000 0000 01112345788899999999999999999999999999999999999999999999
Q ss_pred EeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhh
Q 040435 526 GAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLIT 605 (1991)
Q Consensus 526 aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~ 605 (1991)
||+.+... ........+..........+|||||||++|+++||++++.+++..|++.... ...++||+++|++
T Consensus 129 ~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~DQ~~ln~~ 201 (250)
T PF01501_consen 129 AAVEDESF-----DNFPNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGM--KLGFPDQDILNIV 201 (250)
T ss_dssp EEEE---------HHHHTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTT--T-SSCHHHHHHHH
T ss_pred cccccchh-----hhhhhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhccc--ccCcCchHHHhhh
Confidence 99988111 1111111111122234457899999999999999999999999999766554 4678999999999
Q ss_pred hccccccccccccccccCC--CccccccccCCceEeecccCCCccccc
Q 040435 606 FYNLTYPLDRSWHVLGLGY--DPALNLTQIDNGAVVHYNGNNKPWLDL 651 (1991)
Q Consensus 606 f~~~~~~L~~~wN~~~~~~--~~~~~~~~~~n~~IiHY~g~~KPW~~~ 651 (1991)
|.+.++.||++||++..++ .........++++||||+|..|||..+
T Consensus 202 ~~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 202 FYGNIKPLPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp HTTGEEEEEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred ccceeEEECchhccccccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 9999999999999985444 111112345788999999999999754
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A .... |
| >cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-28 Score=280.56 Aligned_cols=234 Identities=14% Similarity=0.134 Sum_probs=159.3
Q ss_pred ceEEEEcc-c--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 367 YHYAIFSD-N--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 367 ~hi~~~~D-n--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
+||+.... + +.+++|++.|++.|+. .+++|||++|+++.+.. +.|
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~------------------------------~~l 48 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFK------------------------------EFL 48 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHH------------------------------HHH
Confidence 46665444 4 5689999999999985 46999999988764433 355
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
+++.......+.|...+...... .+... ....++|.||+++++||+ ++||||||+|+||.+||++||++|++|
T Consensus 49 ~~~~~~~~~~i~~i~i~~~~~~~-----~~~~~-~~~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~ 122 (248)
T cd06432 49 PEMAKEYGFEYELVTYKWPRWLH-----KQTEK-QRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKG 122 (248)
T ss_pred HHHHHHhCCceEEEEecChhhhh-----ccccc-chhHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCC
Confidence 55544422222222222111110 00001 113577999999999996 999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhc-hhccccccCCCCc
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDAN-EDRTLWKLGTLPP 601 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~-~~~~~~~~~dqd~ 601 (1991)
+++|||+++..... ......+...+....+ +...||||||||+||++||++++++++....+.. .....+.++|||+
T Consensus 123 ~~~Aav~d~~~~~~-~~~~~~~~~~~~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDi 200 (248)
T cd06432 123 APYGYTPFCDSRKE-MDGFRFWKQGYWKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDL 200 (248)
T ss_pred CeEEEeeccccchh-cccchhhhhhhhhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchh
Confidence 99999998754311 1111111111111122 2345999999999999999999999776665432 2223367899999
Q ss_pred hhhhhccc-cccccccccccccCCCccccccccCCceEeecccC
Q 040435 602 GLITFYNL-TYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGN 644 (1991)
Q Consensus 602 ~n~~f~~~-~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~ 644 (1991)
+|.++.+. ++.||++||++ .++.. .+..+.|++|||+.+
T Consensus 201 LN~v~~~~~i~~Lp~~w~~~-~~~~~---~~~~~~~~~~~~~~~ 240 (248)
T cd06432 201 PNNMQHQVPIFSLPQEWLWC-ETWCS---DESKKKAKTIDLCNN 240 (248)
T ss_pred hHHHhccCCeEECChHHHHH-HHHhc---ccccCccceeecccC
Confidence 99999886 99999999987 33322 233678899999874
|
C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-18 Score=243.62 Aligned_cols=605 Identities=12% Similarity=0.047 Sum_probs=404.8
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCC--CCh-HHH----------------HHHHHHH
Q 040435 722 YIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC--RDS-VSW----------------NIMIQGH 782 (1991)
Q Consensus 722 ~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~--~d~-~s~----------------n~LI~a~ 782 (1991)
...+++...+++... +.|+.+...++..+.+.|+.++|.+.+++..+ |+. ..+ -.+...+
T Consensus 44 ~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 44 EDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred hHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 334444444444332 23455556666666677777777776666532 221 111 1222345
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHH
Q 040435 783 LDHGTLGEGLWWFYKARVAGFEPNNS-ILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECA 860 (1991)
Q Consensus 783 ~~~g~~~~Al~lf~~M~~~gi~Pd~~-ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A 860 (1991)
.+.|++++|+..|+.+.+.+ +|+.. ............|+.++|...++.+++... .+...+..|-..+.. |+.++|
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHH
Confidence 66677777777777766532 23321 111111112234667777777777766542 234445555555555 677777
Q ss_pred HHHHHhcCCCC------HHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 040435 861 RKLFDEMCERD------VISW-----------------SVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKA 917 (1991)
Q Consensus 861 ~~vf~~m~~~d------~~sy-----------------n~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a 917 (1991)
...|+++.... ...| ...+..+-......+|...+.++... ...|+... ...-.+
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~~-~~~G~~ 278 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFRA-RAQGLA 278 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchHH-HHHHHH
Confidence 77777663211 1111 11111111122234455555554432 12232221 122344
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC--CC---HhHHHHH------------
Q 040435 918 CTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--KN---KVSWNSA------------ 980 (1991)
Q Consensus 918 ~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d---v~s~n~L------------ 980 (1991)
+...|++++|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+ |+ ...|..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 566788888888888888754 23677788888888888999998888887653 22 1223222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Q 040435 981 LSGLVVNEKYSEALSLLYSMGKGVNEV-DEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHL 1059 (1991)
Q Consensus 981 I~a~~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~ 1059 (1991)
...+.+.|++++|+..|++.... .| +...+..+-..+...|++++|.+.+..+++... .+...+..+...|. .++
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcC
Confidence 33566789999999999988764 34 344566677778888999999999998887652 34455666777774 457
Q ss_pred HHHHHHHHHhcCCCc------------hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccCh
Q 040435 1060 VELAWKLFNDVKKPD------------VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATEL 1126 (1991)
Q Consensus 1060 l~~A~~lf~~m~~~d------------~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~l 1126 (1991)
.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|+.
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 899998888765311 223555667788899999999999998874 464 44566777788999999
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCC----CH---------hHHHHHHHHHHHcCCHH
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRK----NI---------VSWSAMVAAYGMNGLAH 1193 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~----d~---------~s~n~LI~ay~~~G~~~ 1193 (1991)
++|...++.+++.. +.+...+.++...+.+.|+.++|...++.+... +. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999988754 234444445555677899999999999988642 11 11234567788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
+|+++++. .+++...+..+...+...|+.++|++.|+..++ ..| +...+..++.+|.+.|++++|++.++.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999872 244556677788889999999999999999976 566 478899999999999999999999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch------HHHHHHHHHHhCCCchhHHHH-HHHHHHcC
Q 040435 1273 MPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA------GYLLASSMYAAGGLWVESSGT-RLLAKERG 1345 (1991)
Q Consensus 1273 m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~------~yvlL~~lya~~G~~~ea~~v-r~~m~~~g 1345 (1991)
..+..+.+..++..+..++...|+.++|...++++++..|+++. .+..++.+|...|++++|... ++.|...|
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 88754556778888999999999999999999999998776543 455679999999999999976 55677666
Q ss_pred Cc
Q 040435 1346 VK 1347 (1991)
Q Consensus 1346 i~ 1347 (1991)
+.
T Consensus 743 ~~ 744 (1157)
T PRK11447 743 IT 744 (1157)
T ss_pred CC
Confidence 64
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-18 Score=244.18 Aligned_cols=586 Identities=9% Similarity=-0.023 Sum_probs=429.7
Q ss_pred HHHHHHHhcCCchHHHHHHhhcC--C-CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH------------
Q 040435 746 ALMDFYMKWRFPDSAVAVFDDCI--C-RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSIL------------ 810 (1991)
Q Consensus 746 ~Li~~y~k~G~~~~A~~lfd~m~--~-~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty------------ 810 (1991)
..+..+...++.+.|++.++++. . .|...+..++..+.+.|+.++|...+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 44566778899999999998864 2 367788899999999999999999999998754 443322
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHh-h-CCHHHHHHHHHhcCC--C-CHHHHHHHHH
Q 040435 811 -----VLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYV-D-ADMECARKLFDEMCE--R-DVISWSVMIG 880 (1991)
Q Consensus 811 -----~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~ya-k-g~~e~A~~vf~~m~~--~-d~~syn~LI~ 880 (1991)
....+.+...|++++|.+.+..+.+.... +......+..... . |+.++|.+.|+++.. | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22334577889999999999999876433 2222111222222 3 899999999999854 3 5667888889
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC---------------CCHH---HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 040435 881 GYVQSAEAFSGLRLFRQMVSGFKNE---------------PDGQ---SLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCD 942 (1991)
Q Consensus 881 a~~~~G~~~eAl~lf~~M~~~~gv~---------------Pd~~---T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd 942 (1991)
.+...|+.++|+..|+++....... ++.. .+...+..+-.......+...+..+.+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999986531000 0000 111111111112223344455544443333333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHH-----
Q 040435 943 LFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--K-NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEV-DEITLV----- 1013 (1991)
Q Consensus 943 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~----- 1013 (1991)
.. ...+...+...|++++|...|++..+ | +...+..|...|.+.|++++|+..|++..+..... ....+.
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 22345667789999999999998754 3 77889999999999999999999999987643221 111111
Q ss_pred -------HHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHH
Q 040435 1014 -------NILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIA 1083 (1991)
Q Consensus 1014 -------~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~ 1083 (1991)
..-..+...|++++|...+..+++.. +.+...+..|..+|...|++++|.+.|++..+ | +...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11234567899999999999999875 34566777889999999999999999999875 3 3456666777
Q ss_pred hhhhcCChHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 040435 1084 GFTLCGRPREAIAVFQEMNQAQEKP--------NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMY 1155 (1991)
Q Consensus 1084 ~y~~~g~~eeAl~lf~~M~~~Gv~P--------d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y 1155 (1991)
.|. .++.++|+.+++.+....... ....+..+...+...|+.++|.+.++.+++... .+..++..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 664 467899999887764321000 011233455667788999999999999988753 3566777899999
Q ss_pred HhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHh
Q 040435 1156 AKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV---------TTLSVLSACSH 1223 (1991)
Q Consensus 1156 ~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~---------T~~~LL~ac~~ 1223 (1991)
.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..++.+......++.. .+..+...+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998754 3 55566666666788999999999998865433222222 12345667889
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
.|+.++|.++++. ..++...+..+.+.|.+.|++++|++.+++..+..+.+..++..|...+...|+.++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998872 2335667788999999999999999999999876566789999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1304 TSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1304 ~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
++++++..|+++..+..++.+|...|++++|..+.+.+...
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999887765443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-16 Score=215.01 Aligned_cols=624 Identities=10% Similarity=0.030 Sum_probs=418.2
Q ss_pred ccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHH
Q 040435 682 SKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSA 760 (1991)
Q Consensus 682 ~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A 760 (1991)
...|++++|+..|++..+.. |.++.++..+.+++...+ ...|.......++.. +.|...+..| ..+ ++.++|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhH
Confidence 35699999999999988755 777778877888887777 778888888888764 3455555554 222 899999
Q ss_pred HHHHhhcCC--C-ChHHHHHHHHH--------HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChHHHHH
Q 040435 761 VAVFDDCIC--R-DSVSWNIMIQG--------HLDHGTLGEGLWWFYKARVAGFEPNNSILVLV-IQACRCLGAYYEGLQ 828 (1991)
Q Consensus 761 ~~lfd~m~~--~-d~~s~n~LI~a--------~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~l-L~a~~~~g~~~~a~~ 828 (1991)
..+++++.. | +...+..+... |.+. ++|++.++ .+.....|+...+... .+.+...++++.+..
T Consensus 128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999853 3 23333333333 6666 45555554 4444444556655555 899999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHhh--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 040435 829 VHGYIIRSGLWAVHSVQNSVLSMYVD--ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEP 906 (1991)
Q Consensus 829 l~~~~~k~G~~~d~~v~naLi~~yak--g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~P 906 (1991)
++..+.+.+... ......|-..|.. ++ +.|..++....+.|...+.++...|.+.|+.++|.++++++.....-.|
T Consensus 204 lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 204 LYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 999999998554 3334455556666 45 8888888766667899999999999999999999999999875433346
Q ss_pred CHHHHHHHHHHHHccCChHH-HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHH
Q 040435 907 DGQSLVSVLKACTNLRDLTM-GRMVHGLVIYRGLGCD-LFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGL 984 (1991)
Q Consensus 907 d~~T~~~lL~a~~~~g~~~~-a~~l~~~m~k~g~~pd-~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~ 984 (1991)
...++.-++. +.+.... ++.-+. + .+.++ ....-.++..+.+.+.++.|.++.+. ...+.. .-.=..+.
T Consensus 282 ~~~~~~~~l~---r~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~r~~~~ 352 (987)
T PRK09782 282 QEKSWLYLLS---KYSANPVQALANYT---V-QFADNRQYVVGATLPVLLKEGQYDAAQKLLAT-LPANEM-LEERYAVS 352 (987)
T ss_pred ccHHHHHHHH---hccCchhhhccchh---h-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC-CCcchH-HHHHHhhc
Confidence 6655555543 3333321 111110 0 11111 12233457888888998888877442 222221 11111122
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHh-c-CCCchhhhhhHHHHHHhcCCH-
Q 040435 985 VVNEKYSEALSLLYSMGKGVNEV-DEITLVNILQICKCFVHPMECKSVHCVILRR-A-FESNELVLNSLIDGYSKCHLV- 1060 (1991)
Q Consensus 985 ~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~-g-~~~d~~v~naLI~~y~k~G~l- 1060 (1991)
...+...++...++.|-+.. | +....--+---....|+.++|.+++...... + -..+....+-|+..|.+.+.+
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred cccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 23466667777777775431 1 1111111111223457778888887776652 1 122444555677777777662
Q ss_pred --HHHHHH-------------------------HHhcCC---C--chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCC
Q 040435 1061 --ELAWKL-------------------------FNDVKK---P--DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKP 1108 (1991)
Q Consensus 1061 --~~A~~l-------------------------f~~m~~---~--d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~P 1108 (1991)
.+|..+ +..... + +...|..+...+.. ++.++|+..|.+.... .|
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC
Confidence 222222 111111 2 45567777766666 7888888877776654 46
Q ss_pred CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHH---HHHH
Q 040435 1109 NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSA---MVAA 1185 (1991)
Q Consensus 1109 d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~---LI~a 1185 (1991)
+......+..++...|+++.|...+..+... .++...+..+...+.+.|+.++|...|+...+.+...++. +...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 6655444455556888899988888876554 2333445566777888899999999988776533222222 2233
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELD 1264 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~e 1264 (1991)
+...|++++|+..+++..+ +.|+...+..+..++.+.|+.++|.+.+++.++ +.|+ ...+..+..+|...|+++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 3345899999999998886 457777888888888899999999999988876 6774 677788888888999999
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+|++.+++..+..+.+..+|..+..++...|+.+.|+..++++++++|++.......+.+.....++..+.+-..
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999888775556788889999999999999999999999999999888888888888888888877776444
|
|
| >KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=253.64 Aligned_cols=250 Identities=19% Similarity=0.335 Sum_probs=211.5
Q ss_pred chHHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCC--ceEE
Q 040435 1716 VVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFY--RIEQ 1793 (1991)
Q Consensus 1716 ~~~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~--R~~q 1793 (1991)
++++.+..+|+++|.++++|||.+|++|++++++|+.|++.+..+.|+.++|+|.++++|.|++-|.+.|+-|+ |..+
T Consensus 4 ~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~~~~g~~~~ 83 (868)
T KOG1934|consen 4 RLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYTPSNARSRDERAVFKEFWPLFYPGRTIA 83 (868)
T ss_pred hHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeCCCCCchHHHHHHHHhhccccCCCceeE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999998765 4444
Q ss_pred E--EEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-ccccccCCccccccccccccCCCCCCcccHHHHhhcCcCCCCC
Q 040435 1794 L--ILATLPDPKNGKQPSIITEDNFQLLFEMQKKVD-GVRANDSASLVSITDICLKPLGEDCASQSVLQYFKMDPENYDS 1870 (1991)
Q Consensus 1794 v--ii~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~-~l~~~~~~~~~tl~DiC~kp~~~~C~i~S~l~yf~~~~~~~~~ 1870 (1991)
+ ++.. .++||+|++++++++.++++.|+ |+++..++..++|+|+|.+.-+..|..+-++..++++...
T Consensus 84 ~~~~~~~------~~~gniL~~~~l~e~~~i~~~i~~n~~~~~~~~~~~~~d~C~~~~~~~~~~~~~~~~~~~~~~~--- 154 (868)
T KOG1934|consen 84 IFRFIYL------KDGGNILRPEYLDEVLQIDDYISNNLTVDVDGRRITYKDFCMRNCDVNCFYNLLLILLKRLTIS--- 154 (868)
T ss_pred eEEEEEe------ccCccccCHHHHHHHHHHHHHHHhheeeecCCceeehhhhhhcCCCcchhhHHHHHHhhcccCC---
Confidence 3 3333 25679999999999999999999 7888888888999999999767789888888887643321
Q ss_pred ccCcccccccccccCCCccccccCCCCCCcccccCCcc----CCCcccccEEEEEEEeccCCCcchHhhHHHHHHHHHHH
Q 040435 1871 YGGIEHAEYCFQHYASSDTCLSAFKAPLDPSTVLGGFS----GNNYSEASAFIITYPVNNAIDETSKENRKAVAWEKAFI 1946 (1991)
Q Consensus 1871 ~~~~~~~~~c~~~~~~~~~c~~~~g~pv~~~~~lGG~~----~~~~~~A~A~~lty~l~n~~~~~~~~~~~a~~WE~~f~ 1946 (1991)
..++... +|.+..+|.|++.+..|||++ ++++.+|+|++++|.++-++++. .+.+.+||.+|.
T Consensus 155 ---~~~~~lT-------YP~~~~~~~~~~l~~~f~GV~~~~~~~~i~sakav~L~y~~~~~~~~~---~~~~~~wE~~~~ 221 (868)
T KOG1934|consen 155 ---RPQFNLT-------YPITEVFGDKIYLGPNFGGVKLGPEDGRIKSAKAVVLYYRLELKTDET---EQVAKEWERSLE 221 (868)
T ss_pred ---CCceEEe-------cCccccCCCceecccccccceecCCCCceeEEEEEEEEEEeecCCcch---HHHHHHHHHHHH
Confidence 1122211 467778899999999999996 46789999999999999765543 478999999999
Q ss_pred HHHHhhhccccCCCCeEEEEEecccHHHHHhhhhcccccEEEEeC
Q 040435 1947 QLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTIVVSL 1991 (1991)
Q Consensus 1947 ~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~s~~dv~~~~iS~ 1991 (1991)
+++.++. ++..++++++++++++||+.|++.+-+|.+++++
T Consensus 222 ~~~~~~~----~s~~I~~~~~s~~~~~~E~~r~~~~~~P~~~v~f 262 (868)
T KOG1934|consen 222 DYFRLTY----NSSLISVYVFSSQTLDEELVRNGLTLVPFLSVGF 262 (868)
T ss_pred HHHHhcc----CCCceEEEEecHhHHHHHHHhhhheechHHHHHH
Confidence 9998862 4444999999999999999999999999887653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-15 Score=204.64 Aligned_cols=557 Identities=11% Similarity=-0.014 Sum_probs=387.3
Q ss_pred hcCCchHHHHHHhhcCC--C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 753 KWRFPDSAVAVFDDCIC--R-DSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQV 829 (1991)
Q Consensus 753 k~G~~~~A~~lfd~m~~--~-d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l 829 (1991)
..|++++|...|+...+ | +...+..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++..+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 44999999999988643 3 5678899999999999999999999998875 46666666655333 888899999
Q ss_pred HHHHHHhCCCCchHHHHHHHHH--------Hhh-CCHHHHHHHHHhcCCC--CHH-HHHHHHHHHHHcCChHHHHHHHHH
Q 040435 830 HGYIIRSGLWAVHSVQNSVLSM--------YVD-ADMECARKLFDEMCER--DVI-SWSVMIGGYVQSAEAFSGLRLFRQ 897 (1991)
Q Consensus 830 ~~~~~k~G~~~d~~v~naLi~~--------yak-g~~e~A~~vf~~m~~~--d~~-syn~LI~a~~~~G~~~eAl~lf~~ 897 (1991)
++.+++.... +..++..+... |.+ .....|++ .+...+ +.. ..-.+...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999987643 23333333333 666 55566665 333223 344 344448999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC-----
Q 040435 898 MVSGFKNEPDGQSLVSVLKACTN-LRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ----- 971 (1991)
Q Consensus 898 M~~~~gv~Pd~~T~~~lL~a~~~-~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~----- 971 (1991)
+.+. + ..+..-...+-.++.. .++ +.+..++.. .+..+..+..++.+.|.+.|+.++|.+++++++.
T Consensus 208 L~k~-~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 208 ARQQ-N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHhc-C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9985 2 2233334455556665 355 666666432 4446888999999999999999999999999863
Q ss_pred CCHhHHHH------------------------------HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-
Q 040435 972 KNKVSWNS------------------------------ALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICK- 1020 (1991)
Q Consensus 972 ~dv~s~n~------------------------------LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~- 1020 (1991)
++..+|-- ++.-+.+.++++.|.++. ...|..... .++...
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~~ 352 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAVS 352 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhhc
Confidence 22222211 133444555555444331 133333321 222222
Q ss_pred -ccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC------CchhhhhHHHHhhhhcCC---
Q 040435 1021 -CFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK------PDVVLWSTMIAGFTLCGR--- 1090 (1991)
Q Consensus 1021 -~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~------~d~~syn~LI~~y~~~g~--- 1090 (1991)
..+...++.+....+.+.. +-+....--+.-...+.|+.++|..+|+..-. .+...-+-++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 2345555556666655542 11333333333345678999999999998764 223345567788887776
Q ss_pred hHHHHHHH------------HHH----------HH-CCCCCC---HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccc
Q 040435 1091 PREAIAVF------------QEM----------NQ-AQEKPN---AITIINLLEACSVATELSSSKWAHGIAIRRCLAEE 1144 (1991)
Q Consensus 1091 ~eeAl~lf------------~~M----------~~-~Gv~Pd---~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d 1144 (1991)
..+|+.+- .++ .. .+..|+ ...+..+-..+. .+..++|...+....... |+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~~~~~eAi~a~~~Al~~~--Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-DTLPGVALYAWLQAEQRQ--PD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-hCCcHHHHHHHHHHHHhC--Cc
Confidence 44444441 111 11 122233 333443433333 478888888777666554 34
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSAC 1221 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac 1221 (1991)
......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.+ |+.. .+..+....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHH
Confidence 33333445555689999999999998764 455567777888999999999999999998754 4443 333444455
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
...|++++|...+++.++ +.|+...|..+..++.+.|+.++|...+++.....+.+...+..|..++...|+.++|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 677999999999999876 68888899999999999999999999999998866667889999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1302 GATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1302 ~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
..++++++++|+++..+..++.+|...|+.++|....+..
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765543
|
|
| >cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-20 Score=217.19 Aligned_cols=142 Identities=18% Similarity=0.105 Sum_probs=108.5
Q ss_pred cchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCC
Q 040435 478 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNA 557 (1991)
Q Consensus 478 ~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1991)
.++..+|.||+++++. ++|||||||+|+||.+||++||++ +..++||.+.. + .
T Consensus 73 ~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~--------------------~---~ 125 (240)
T cd02537 73 PRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG--------------------W---P 125 (240)
T ss_pred hHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC--------------------c---c
Confidence 5567889999999975 589999999999999999999998 56688887631 0 3
Q ss_pred cccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccc--cccccccccccccCCCcccc-ccccC
Q 040435 558 CGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNL--TYPLDRSWHVLGLGYDPALN-LTQID 634 (1991)
Q Consensus 558 ~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~--~~~L~~~wN~~~~~~~~~~~-~~~~~ 634 (1991)
.|||||||++|+... ..+.+.+++..... +..+||+++|.+|.++ +..||.+||++...+..... .....
T Consensus 126 ~~fNsGv~l~~~~~~----~~~~~~~~~~~~~~---~~~~DQdiLN~~~~~~~~~~~l~~~yN~~~~~~~~~~~~~~~~~ 198 (240)
T cd02537 126 DLFNSGVFVLKPSEE----TFNDLLDALQDTPS---FDGGDQGLLNSYFSDRGIWKRLPFTYNALKPLRYLHPEALWFGD 198 (240)
T ss_pred ccccceEEEEcCCHH----HHHHHHHHHhccCC---CCCCCHHHHHHHHcCCCCEeECCcceeeehhhhccCchhhcccC
Confidence 499999999999653 34444445444332 6789999999999999 99999999998432221111 12346
Q ss_pred CceEeecccCCCccccccc
Q 040435 635 NGAVVHYNGNNKPWLDLAV 653 (1991)
Q Consensus 635 n~~IiHY~g~~KPW~~~a~ 653 (1991)
+++||||+|..|||.....
T Consensus 199 ~~~iiHf~g~~KPW~~~~~ 217 (240)
T cd02537 199 EIKVVHFIGGDKPWSWWRD 217 (240)
T ss_pred CcEEEEEeCCCCCCCCCcC
Confidence 8899999999999965543
|
Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
| >PLN00176 galactinol synthase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=214.17 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=109.5
Q ss_pred hhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhc--cccccccCCCccc---cCCCC--
Q 040435 482 LNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFH--RFDKYLNFSNPLI---SENFS-- 554 (1991)
Q Consensus 482 ~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~--~~~~~~~~~~~~~---~~~~~-- 554 (1991)
.+|.||.++++. ++|||||||+|+||.++|++||+++. + .+|||.||.++.. ++..+. ..+... +..|+
T Consensus 100 i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~~-~-~~aAV~dc~~~~~~~~~p~~~-~~~c~~~~~~~~wp~~ 175 (333)
T PLN00176 100 INYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLPD-G-YFYAVMDCFCEKTWSHTPQYK-IGYCQQCPDKVTWPAE 175 (333)
T ss_pred hhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCCC-c-ceEEEeccccccccccccccc-ccccccchhhccchhh
Confidence 456788888865 58999999999999999999999953 3 5899999866522 110000 000000 01111
Q ss_pred ---CCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccccccccccccccccCCCc-cccc
Q 040435 555 ---PNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDP-ALNL 630 (1991)
Q Consensus 555 ---~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~-~~~~ 630 (1991)
+...||||||||+|++.|+.+++.+ ++.... ...++|||++|+.|.++++.||..||++. .... ....
T Consensus 176 ~g~~~~~yFNSGVlvinps~~~~~~ll~----~l~~~~---~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~-~~~~~~~~~ 247 (333)
T PLN00176 176 LGPPPPLYFNAGMFVFEPSLSTYEDLLE----TLKITP---PTPFAEQDFLNMFFRDIYKPIPPVYNLVL-AMLWRHPEN 247 (333)
T ss_pred ccCCCCCeEEeEEEEEEcCHHHHHHHHH----HHHhcC---CCCCCCHHHHHHHHcCcEEECCchhcCch-hhhhhChhh
Confidence 2356999999999999999877664 333332 24689999999999999999999999973 1111 1111
Q ss_pred cccCCceEeeccc-CCCccccc
Q 040435 631 TQIDNGAVVHYNG-NNKPWLDL 651 (1991)
Q Consensus 631 ~~~~n~~IiHY~g-~~KPW~~~ 651 (1991)
...++++||||+| ..|||...
T Consensus 248 ~~~~~vkIIHY~~~~~KPW~~~ 269 (333)
T PLN00176 248 VELDKVKVVHYCAAGSKPWRYT 269 (333)
T ss_pred cccCCcEEEEeeCCCCCCCCCC
Confidence 2245789999996 57999643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.8e-15 Score=176.46 Aligned_cols=441 Identities=12% Similarity=0.075 Sum_probs=338.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040435 878 MIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLK-ACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKC 956 (1991)
Q Consensus 878 LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~-a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~ 956 (1991)
|..-..+.|++.+|++.-...-.+ .|+..--..+++ .+.+..+++...+--...++.. ..-..+|..+.+.+-..
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 444455677888887755444332 222222222222 2333334443333222222222 22356788888999999
Q ss_pred CChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCChhhHHHHH
Q 040435 957 KDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQI-CKCFVHPMECKSVH 1032 (1991)
Q Consensus 957 G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a-~~~~g~~~~a~~i~ 1032 (1991)
|++++|+.+++.+.+ ..+..|.-+..++...|+.+.|...|.+..+ +.|+.+...+-+.. ....|.+++|+..+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999988765 3678899999999999999999999988765 56766554433322 23367788888888
Q ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCc---hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC
Q 040435 1033 CVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPD---VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN 1109 (1991)
Q Consensus 1033 ~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d---~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd 1109 (1991)
..+++... --..+|+.|-..+-..|++..|..-|++..+-| ...|-.|-..|...+.+++|+..|.+... .+|+
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn 284 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPN 284 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCc
Confidence 77776542 235678888888999999999999999887633 34677888888899999999999887765 4665
Q ss_pred H-HHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHH
Q 040435 1110 A-ITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAA 1185 (1991)
Q Consensus 1110 ~-~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~a 1185 (1991)
. +.+..+-..|-..|.++.|..-++..+.... .=...|+.|..++-..|++.+|...|..... | -..+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4 4566666667788999999998888877542 2256789999999999999999999998875 3 35688899999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNA-VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGEL 1263 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~-~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~ 1263 (1991)
|...|.+++|..+|....+ +.|.- ..++.|...|-..|++++|+..+++.++ |+|+ ...|+.|...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999887 56654 4688899999999999999999998875 9998 57899999999999999
Q ss_pred HHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1264 DIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1264 eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
++|.+.+.+...-.+.-+...+.|.+.++..||..+|+..|+.+++++|+.+.+|-.|.........|.|
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999998764344567899999999999999999999999999999999999999988888888888
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.4e-14 Score=180.06 Aligned_cols=295 Identities=12% Similarity=0.045 Sum_probs=226.8
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhccCh
Q 040435 1053 GYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN---AITIINLLEACSVATEL 1126 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd---~~T~~~lL~a~a~~g~l 1126 (1991)
.+...|++++|...|.++.+ | +..+|..+...|.+.|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45566777778888877764 3 344677777777788888888888887776432222 23456666777777888
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCC--C------HhHHHHHHHHHHHcCCHHHHHHH
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRK--N------IVSWSAMVAAYGMNGLAHEALAL 1198 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--d------~~s~n~LI~ay~~~G~~~eAl~l 1198 (1991)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|+.++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888887777652 345667788888899999999999999888642 1 12456677788899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHCccC
Q 040435 1199 VAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDMLARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1199 f~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+ ..|+ ...+..++.+|.+.|++++|.+.++++.+.
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998753 22355677788889999999999999999975 3454 456888999999999999999999998763
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh--CCCchhHHHHHHHHHHcCCcccCcEE
Q 040435 1277 LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA--GGLWVESSGTRLLAKERGVKVVAGNS 1353 (1991)
Q Consensus 1277 ~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~--~G~~~ea~~vr~~m~~~gi~k~~g~s 1353 (1991)
.|+...+..+...+...|+.++|...++++++..|++.....++...+.. .|+.+++..+.+.|.++++++.|.+.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56767778899999999999999999999999999887644444433322 56899999999999999999999943
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=181.34 Aligned_cols=295 Identities=13% Similarity=0.078 Sum_probs=185.6
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 040435 882 YVQSAEAFSGLRLFRQMVSGFKNEPD-GQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCD---LFVGNSLIDMYAKCK 957 (1991)
Q Consensus 882 ~~~~G~~~eAl~lf~~M~~~~gv~Pd-~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd---~~v~naLI~~y~k~G 957 (1991)
+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+++.+..++ ..++..|...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 44556667777777777653 333 33555566666666666666666666665432211 245677788888888
Q ss_pred ChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHH
Q 040435 958 DTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCV 1034 (1991)
Q Consensus 958 ~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~ 1034 (1991)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++...+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 88888888888765 4667888888888888888888888888865432211100
Q ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH
Q 040435 1035 ILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI 1111 (1991)
Q Consensus 1035 ~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~ 1111 (1991)
....+..+...|.+.|++++|.+.|+++.+ | +...+..+...|.+.|++++|+++|+++...+......
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 011234566667777888888888877654 2 34566777778888888888888888877643211123
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHH-
Q 040435 1112 TIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGM- 1188 (1991)
Q Consensus 1112 T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~- 1188 (1991)
++..+..++...|+.+.|...+..+.+.. |+...+..++..|.+.|++++|..+|+++.+ |+..+++.++..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 44555555666666666666555555542 3333445566666666666666666665543 566666666655553
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHH
Q 040435 1189 --NGLAHEALALVAEMKLGGLQPNAV 1212 (1991)
Q Consensus 1189 --~G~~~eAl~lf~eM~~~Gi~Pd~~ 1212 (1991)
+|+.++|+.++++|.+.+++|+..
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC
Confidence 446666666666666666555554
|
|
| >PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-16 Score=215.67 Aligned_cols=213 Identities=21% Similarity=0.360 Sum_probs=170.3
Q ss_pred hhhcccCccccCCCcccccCCCChhhhh----hhhhhhcCCCCCceEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 040435 1750 LCLGVIRFKVETRPEKLWVGPGSRAAGE----KQFFDSHLAPFYRIEQLILATLPDPKNGKQPSIITEDNFQLLFEMQKK 1825 (1991)
Q Consensus 1750 l~~Gl~~~~~etdp~~Lw~p~~S~a~~E----k~~fd~~Fgpf~R~~qvii~~~~~~~~~~~~~vL~~~~l~~~~~l~~~ 1825 (1991)
++.|+.++..++|.. .|+|++++++.| ++||++++.|++|+..|+.+. .++|+|+++.|+++.+|++.
T Consensus 1 ~~~~~~~~~tp~d~~-~~~~~~~~s~~e~~~~~~Ff~~~~~~~~~~~~i~a~~-------~~~nlL~~~~l~ei~~l~~~ 72 (798)
T PF02460_consen 1 TSSDIEYLFTPDDIR-GYTERNSRSRREPEDSSEFFPSRGSPFRRFVIIIAKD-------GGSNLLRPEYLDEILQLDDF 72 (798)
T ss_pred CCCCcceecCCCCcc-ccCCCcchhhhhhhhHhhccCCCCCCceEEEEEEEec-------CCCCCcCHHHHHHHHHHHHH
Confidence 467888899999988 999999999998 456677777887775544443 23389999999999999999
Q ss_pred Hhc-cccccCCccccccccccccCCCCCCcccHHHHhhc-CcCCCCCccCcccccccccccCCCccccccCCCCCCcccc
Q 040435 1826 VDG-VRANDSASLVSITDICLKPLGEDCASQSVLQYFKM-DPENYDSYGGIEHAEYCFQHYASSDTCLSAFKAPLDPSTV 1903 (1991)
Q Consensus 1826 I~~-l~~~~~~~~~tl~DiC~kp~~~~C~i~S~l~yf~~-~~~~~~~~~~~~~~~~c~~~~~~~~~c~~~~g~pv~~~~~ 1903 (1991)
|++ +++..++++++|+|+|.++-..+|.++++++++.. +..+ ..+ +. .+|++..+|.|++.+..
T Consensus 73 I~~~~~v~~~~~~~~~~dlC~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~l-----tyP~~~~~~~~~~l~~~ 138 (798)
T PF02460_consen 73 IMNNITVEDDGETITYKDLCAKYCDLNCPVNSFLNFELESNRSN-------DNI--NL-----TYPIMNIFGQPIFLGPN 138 (798)
T ss_pred HHHhceeccCCeeeeccccCCCccCCCcchhHHHHHHHHhhccC-------Cce--ee-----cCCccCCCCcccccCce
Confidence 986 88888888999999999976779999999986321 1111 111 11 24677789999999999
Q ss_pred cCCcc----CCCcccccEEEEEEEeccCCCcchHhhHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEecccHHHHHhhh
Q 040435 1904 LGGFS----GNNYSEASAFIITYPVNNAIDETSKENRKAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRE 1979 (1991)
Q Consensus 1904 lGG~~----~~~~~~A~A~~lty~l~n~~~~~~~~~~~a~~WE~~f~~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~ 1979 (1991)
|||++ ++.+.+|+|++++|.++.+.++ ..+.+.+||++|.+++++.. ...++++++++++|++||++++
T Consensus 139 ~ggv~~~~~~~~i~~a~a~~l~y~l~~~~~~---~~~~~~~we~~~~~~~~~~~----~~~~i~~~~~s~~s~~~e~~~~ 211 (798)
T PF02460_consen 139 FGGVTTDPDNGNIESAKAVVLTYMLNTDDEE---QEEIAKAWERAFEDYLENYS----NSNNIQIYYFSSRSVDDELNRN 211 (798)
T ss_pred ecCccccCCcchhheeEEEEEEEEcccccch---hhHHHHHHHHHHHHHHhhcc----ccCcEEEEEeeHHHHHHHHHHH
Confidence 99996 3568999999999999865433 24688999999999998751 3347999999999999999999
Q ss_pred hcccccEEEEeC
Q 040435 1980 STADVVTIVVSL 1991 (1991)
Q Consensus 1980 s~~dv~~~~iS~ 1991 (1991)
+.+++|.+++|+
T Consensus 212 ~~~~~~~~~~~~ 223 (798)
T PF02460_consen 212 SQTLVPLFAIGF 223 (798)
T ss_pred HHhHHHHHHHHH
Confidence 999999887653
|
In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-13 Score=163.39 Aligned_cols=412 Identities=14% Similarity=0.086 Sum_probs=319.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCH
Q 040435 914 VLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKY 990 (1991)
Q Consensus 914 lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~ 990 (1991)
+..-..+.|++.+|++--..+-... +.+....-.+-..+..+.+.+....--....+ .-..+|..+...+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3334456678887776444333322 11111222233445555555544332222222 2457899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhh-hhHHHHHHhcCCHHHHHHHHH
Q 040435 991 SEALSLLYSMGKGVNEVD-EITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVL-NSLIDGYSKCHLVELAWKLFN 1068 (1991)
Q Consensus 991 ~eAl~lf~~M~~~Gi~Pd-~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~-naLI~~y~k~G~l~~A~~lf~ 1068 (1991)
++|+.+++.|.+ ++|+ ...|..+-.++...|+.+.|.+.+...++.. |+.... +-+-......|++++|...+.
T Consensus 133 ~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999999987 4564 4578888889999999999999998888754 444433 334444556899999999888
Q ss_pred hcCC--Cc-hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhccChHHHHHHHHHHHHhccccc
Q 040435 1069 DVKK--PD-VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNA-ITIINLLEACSVATELSSSKWAHGIAIRRCLAEE 1144 (1991)
Q Consensus 1069 ~m~~--~d-~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~-~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d 1144 (1991)
+..+ |. .+.|+.|...+-.+|+..+|+..|++..+ +.|+- ..|..|-..+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7664 43 57899999999999999999999999876 56653 356677777777777777776666555432 223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA-VTTLSVLSA 1220 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~-~T~~~LL~a 1220 (1991)
..++..|...|-..|.+|-|...|++..+ |+ ...|+.|..++-..|+..+|...|++.+. +.|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 55667777888999999999999998875 43 57999999999999999999999999887 45554 478889999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC-HHHHHHHHHHHHHcCChh
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT-ASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd-~~~~~~Ll~a~~~~g~~e 1298 (1991)
+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++... ++|+ +.+++.+...|...|++.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-I~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-IKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-cCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999998876 7776 56789999999999999999999999876 5665 569999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.|...+.+++..+|.-+.++..|+.+|..+|...+|..-.+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 99999999999999999999999999999999999887554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-12 Score=171.71 Aligned_cols=90 Identities=11% Similarity=-0.038 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+..+..++...|++++|++.++++....+.+...+..+...+...|+.+.|+..++++++++|++...++.++.++...|
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 33444455555555555555555544334445555555555555555555555555555555555555555555555555
Q ss_pred CchhHHHHHH
Q 040435 1330 LWVESSGTRL 1339 (1991)
Q Consensus 1330 ~~~ea~~vr~ 1339 (1991)
+|++|+.+.+
T Consensus 442 ~~~~A~~~~~ 451 (765)
T PRK10049 442 EWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHH
Confidence 5555554433
|
|
| >cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=174.27 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=107.7
Q ss_pred cchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCC
Q 040435 478 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNA 557 (1991)
Q Consensus 478 ~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1991)
.|+. +|.||.++++ ++++||||||+|+||.++|++||+++.... +||+.. +|
T Consensus 76 ~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~~~-~Aap~~---------------------~~---- 127 (278)
T cd06914 76 YWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNYIK-FAAPRA---------------------YW---- 127 (278)
T ss_pred cHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCcccc-eeeecC---------------------cc----
Confidence 5554 4999999998 679999999999999999999999984333 555331 11
Q ss_pred cccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccc-------ccccccc-ccccc--------
Q 040435 558 CGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNL-------TYPLDRS-WHVLG-------- 621 (1991)
Q Consensus 558 ~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~-------~~~L~~~-wN~~~-------- 621 (1991)
||||||||+|++.|+.+++.+++....... ....|||++|.+|.+. +..||.+ ||++.
T Consensus 128 -~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~-----~~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~ 201 (278)
T cd06914 128 -KFASHLMVIKPSKEAFKELMTEILPAYLNK-----KNEYDMDLINEEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLH 201 (278)
T ss_pred -eecceeEEEeCCHHHHHHHHHHHHHhcccC-----CCCCChHHHHHHHhCCccccCcceEEcCccccccCChhhcccCH
Confidence 899999999999999999998775543221 2568999999999999 9999987 99874
Q ss_pred ---cC-----CCccccccccCCceEeecccC--CCccccccc
Q 040435 622 ---LG-----YDPALNLTQIDNGAVVHYNGN--NKPWLDLAV 653 (1991)
Q Consensus 622 ---~~-----~~~~~~~~~~~n~~IiHY~g~--~KPW~~~a~ 653 (1991)
+| ++.+...+..+++|+|||... .|||.....
T Consensus 202 ~~~l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~~ 243 (278)
T cd06914 202 KSFLSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNNL 243 (278)
T ss_pred HHhhccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcCH
Confidence 11 111111133468899999986 799965543
|
N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-11 Score=166.36 Aligned_cols=414 Identities=11% Similarity=-0.038 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040435 874 SWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMY 953 (1991)
Q Consensus 874 syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y 953 (1991)
.+......+.+.|++++|+..|.+..+ +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 455666777888888888888888775 46776667667677777777777777777766543 12344566666666
Q ss_pred HhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHhccCChhhH
Q 040435 954 AKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGV--NEVDEITLVNILQICKCFVHPMEC 1028 (1991)
Q Consensus 954 ~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~G--i~Pd~~T~~~lL~a~~~~g~~~~a 1028 (1991)
...|++++|..-|..... .+......++..+.. ..+........... ..|........+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~------------ 268 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYL------------ 268 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH------------
Confidence 677777766665543221 011111111111111 11111111111100 011111111111
Q ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCch---hhhhHHHHh---hhhcCChHHHHHHHHHHH
Q 040435 1029 KSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDV---VLWSTMIAG---FTLCGRPREAIAVFQEMN 1102 (1991)
Q Consensus 1029 ~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~---~syn~LI~~---y~~~g~~eeAl~lf~~M~ 1102 (1991)
.......+..-++...+.+. ..+..+... ....+++++|++.|++..
T Consensus 269 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 269 ---------------------------QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred ---------------------------HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 10000000000110000000 000000000 012345566666666655
Q ss_pred HCC-CCCC-HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHh
Q 040435 1103 QAQ-EKPN-AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIV 1177 (1991)
Q Consensus 1103 ~~G-v~Pd-~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~ 1177 (1991)
+.+ ..|+ ...+..+-..+...|+++.|...+..+++.. +.....+..+...|...|++++|...|+++.+ .+..
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 400 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 543 2232 2233344444455666666666666655542 12233555666667777777777777776643 3456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVD 1255 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~ 1255 (1991)
.|..+...|...|++++|+..|++.++. .| +...+..+..++...|++++|+..|+..++ ..| +...|..+..
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGE 475 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHH
Confidence 7777777777788888888888877764 34 344556666677777888888888887765 345 3567777777
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATAS-------AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~-------~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
+|...|++++|.+.+++..+..+.+.. .++..+..+...|++++|...++++++++|++...+..++.+|...
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 888888888888887776542111111 1111222233357888888888888888888777778888888888
Q ss_pred CCchhHHHHHHH
Q 040435 1329 GLWVESSGTRLL 1340 (1991)
Q Consensus 1329 G~~~ea~~vr~~ 1340 (1991)
|++++|......
T Consensus 556 g~~~eAi~~~e~ 567 (615)
T TIGR00990 556 GDVDEALKLFER 567 (615)
T ss_pred cCHHHHHHHHHH
Confidence 888887765543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-12 Score=171.39 Aligned_cols=416 Identities=11% Similarity=-0.012 Sum_probs=315.3
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC
Q 040435 892 LRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ 971 (1991)
Q Consensus 892 l~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~ 971 (1991)
+..++. .+. -..+..-..-.+......|+.++|.+++....... ..+...+..+..++.+.|++++|..+|+...+
T Consensus 2 ~~~~~~-~~~--~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 2 LSWLRQ-ALK--SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred chhhhh-hhc--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555 332 23344455566777788999999999999887632 44566789999999999999999999999543
Q ss_pred ---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhh
Q 040435 972 ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLN 1048 (1991)
Q Consensus 972 ---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n 1048 (1991)
.+...+..+...+...|+.++|+..+++.... .|+...+..+-.++...|+.++|...+..+++.... +..++.
T Consensus 78 ~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~ 154 (765)
T PRK10049 78 LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPT 154 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 35677888999999999999999999999765 444333667777888999999999999999987643 555666
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcCC-Cch------hhhhHHHHhh-----hhcCCh---HHHHHHHHHHHHC-CCCCCHH-
Q 040435 1049 SLIDGYSKCHLVELAWKLFNDVKK-PDV------VLWSTMIAGF-----TLCGRP---REAIAVFQEMNQA-QEKPNAI- 1111 (1991)
Q Consensus 1049 aLI~~y~k~G~l~~A~~lf~~m~~-~d~------~syn~LI~~y-----~~~g~~---eeAl~lf~~M~~~-Gv~Pd~~- 1111 (1991)
.+..++.+.|..+.|.+.++.... |+. .....++..+ ...+++ ++|++.++.+.+. ...|+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 788888899999999999998876 221 1122222222 222334 7899999999864 2344332
Q ss_pred HHH----HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-------HhHHH
Q 040435 1112 TII----NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN-------IVSWS 1180 (1991)
Q Consensus 1112 T~~----~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d-------~~s~n 1180 (1991)
.+. ..+.++...++.+.|...++.+.+.+-.......-.+...|...|++++|+..|+++.+.+ ...+.
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 221 1245667779999999999999888632111222335778999999999999999886422 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-
Q 040435 1181 AMVAAYGMNGLAHEALALVAEMKLGGL-----------QPNA---VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP- 1245 (1991)
Q Consensus 1181 ~LI~ay~~~G~~~eAl~lf~eM~~~Gi-----------~Pd~---~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P- 1245 (1991)
.|..++...|++++|+++++++....- .|+. ..+..+...+...|+.++|++.++++.. ..|
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~ 391 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPG 391 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 677788999999999999999987531 1232 2345566778899999999999999976 456
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
+...+..+..++.+.|++++|++.+++.....+.+...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 578899999999999999999999999987555567888888889999999999999999999999999863
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-11 Score=151.04 Aligned_cols=560 Identities=13% Similarity=0.099 Sum_probs=328.2
Q ss_pred hHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc---hhhHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCchHHH
Q 040435 687 WQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS---YIHGRLVHACLVKQ--GYESFTSIGNALMDFYMKWRFPDSAV 761 (1991)
Q Consensus 687 ~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~---~~~a~~i~~~~lk~--g~~~d~~~~n~Li~~y~k~G~~~~A~ 761 (1991)
.+.|...|....... |+ .....+.+||..-+ +..+..++...+.. ...+|+.+.-. ..+.++|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~--Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PD--NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhC--Cc--chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHH
Confidence 688889998887755 43 34567778886543 66777777775543 34556554422 4456888888888
Q ss_pred HHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 040435 762 AVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAV 841 (1991)
Q Consensus 762 ~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d 841 (1991)
..|.+..+-|...-++++... +++.-.. | ...+..|.+++...-+.. ..+
T Consensus 220 ~a~~ralqLdp~~v~alv~L~-----------~~~l~~~-----d-------------~~s~~~~~~ll~~ay~~n-~~n 269 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALG-----------EVDLNFN-----D-------------SDSYKKGVQLLQRAYKEN-NEN 269 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHH-----------HHHHHcc-----c-------------hHHHHHHHHHHHHHHhhc-CCC
Confidence 888877665554444444211 1110000 0 012233333333333322 224
Q ss_pred hHHHHHHHHHHhh-CCHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHH--
Q 040435 842 HSVQNSVLSMYVD-ADMECARKLFDEMCERD------VISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLV-- 912 (1991)
Q Consensus 842 ~~v~naLi~~yak-g~~e~A~~vf~~m~~~d------~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~-- 912 (1991)
+.+.+.|-+.|.- |+++.+..+...+.... ..+|--|.++|...|++++|...|.+-.. ..||.+++.
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLPLV 346 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCcccccc
Confidence 4455555555443 66666666655553221 23466678888888888888888887764 345543333
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHhccCCCC---CHhHHHHHHHHHH
Q 040435 913 SVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCK----DTDSAFKVFSEMPQK---NKVSWNSALSGLV 985 (1991)
Q Consensus 913 ~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G----~~e~A~~lf~~m~~~---dv~s~n~LI~a~~ 985 (1991)
.+...+...|+++.+...|+.+.+.. +.+..+...|-..|+..+ ..+.|..+.....++ |...|-.+...+-
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34455566666666666666666543 223444555555555443 344555555444432 4444544444333
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHH
Q 040435 986 VNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWK 1065 (1991)
Q Consensus 986 ~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~ 1065 (1991)
+.. ...++.+|... ...+...+..+.+.+.|.+...+...|+++.|..
T Consensus 426 ~~d-~~~sL~~~~~A-------------------------------~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 426 QTD-PWASLDAYGNA-------------------------------LDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred hcC-hHHHHHHHHHH-------------------------------HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 322 22224333322 1123334445666777777777777777777777
Q ss_pred HHHhcCC-------Cchh-------hhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-hccChHHHH
Q 040435 1066 LFNDVKK-------PDVV-------LWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACS-VATELSSSK 1130 (1991)
Q Consensus 1066 lf~~m~~-------~d~~-------syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a-~~g~le~a~ 1130 (1991)
.|+.... +|.. -|| +...+-..++.+.|.+.|....+. -|.-++--.-+.+.+ ..+.+..|.
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHH
Confidence 7766542 2221 122 334445566777777777777664 354443222221111 224445555
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHH------------cCCHH
Q 040435 1131 WAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KNIVSWSAMVAAYGM------------NGLAH 1193 (1991)
Q Consensus 1131 ~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~s~n~LI~ay~~------------~G~~~ 1193 (1991)
..+..+.... ..++.+++-+.+.|.+...+..|.+-|..+.+ +|..+.-+|.+.|.+ .+..+
T Consensus 551 ~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 551 LLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 5555444432 34455555566677777777777775554432 354444444443332 24567
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
+|+++|.+.+... +-|...-+.+.-.+++.|.+.+|..+|.+..+. ..-...+|-.+...|.-+|++..|+++|+..
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887643 336666677777778888888888888888764 2233456777888888888888888888876
Q ss_pred ccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1274 PDN--LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1274 ~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
... -+.+..+..-|..++...|.+.+|.+.+..++.+.|.++..-+.++-+.
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 553 2346778888888888888888888888888888888887666655443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-12 Score=166.96 Aligned_cols=329 Identities=12% Similarity=0.023 Sum_probs=252.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHh
Q 040435 977 WNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSK 1056 (1991)
Q Consensus 977 ~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k 1056 (1991)
...++..+.+.|++++|+.+++........+.. .+..+..+....|+++.|...+..+++.. +.+...+..+..+|.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 344567777888888888888887665433322 33344455556888888888888887765 3345667778888899
Q ss_pred cCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHH
Q 040435 1057 CHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAH 1133 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~ 1133 (1991)
.|+.++|...+++..+ | +...|..+...+...|+.++|...++.+.... |+.......+..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988765 3 45678888889999999999999998887643 33322222233467889999999888
Q ss_pred HHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHH----HHHHHHHHHHCC
Q 040435 1134 GIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHE----ALALVAEMKLGG 1206 (1991)
Q Consensus 1134 ~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~e----Al~lf~eM~~~G 1206 (1991)
..+.+....++......+...|.+.|+.++|...|+.+.+ .+...+..+...|.+.|++++ |+..|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 8877764334444555567788899999999999998764 356788889999999999886 89999999874
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH-HH
Q 040435 1207 LQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA-SA 1283 (1991)
Q Consensus 1207 i~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~-~~ 1283 (1991)
.| +...+..+...+...|++++|...+++.++ ..|+ ...+..+..+|.+.|++++|.+.++++... .|+. ..
T Consensus 280 -~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~ 354 (656)
T PRK15174 280 -NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKW 354 (656)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHH
Confidence 45 455788888899999999999999999876 5665 567778899999999999999999998764 4443 34
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1284 WGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1284 ~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
+..+..++...|+.++|...++++++..|++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 44456778899999999999999999999875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-11 Score=160.68 Aligned_cols=421 Identities=12% Similarity=0.012 Sum_probs=262.0
Q ss_pred HHHHhh-CCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCCh
Q 040435 849 LSMYVD-ADMECARKLFDEM--CERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPD-GQSLVSVLKACTNLRDL 924 (1991)
Q Consensus 849 i~~yak-g~~e~A~~vf~~m--~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd-~~T~~~lL~a~~~~g~~ 924 (1991)
-..|.+ |+++.|...|++. ..|+...|..+..+|.+.|++++|++.+....+ +.|+ ...+..+-.++...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE---LDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHcCCH
Confidence 344445 9999999999987 347888899999999999999999999999987 3554 45788888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 040435 925 TMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGV 1004 (1991)
Q Consensus 925 ~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~G 1004 (1991)
++|..-+..+...+-..+......+...+ +......+...++.-+. +..++..+ ..|........+..-+.+-..
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~a~~~~~~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 285 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERLL-KKFAESKAKEILETKPE-NLPSVTFV-GNYLQSFRPKPRPAGLEDSNE-- 285 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHH-HHHHHHHHHHHHhcCCC-CCCCHHHH-HHHHHHccCCcchhhhhcccc--
Confidence 99998887665543222222222222222 21223444444444322 22333332 222222111111111111000
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHH-HHhcCCHHHHHHHHHhcCC------Cchhh
Q 040435 1005 NEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDG-YSKCHLVELAWKLFNDVKK------PDVVL 1077 (1991)
Q Consensus 1005 i~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~-y~k~G~l~~A~~lf~~m~~------~d~~s 1077 (1991)
..+... ...+... +... ....+++++|.+.|+...+ .....
T Consensus 286 ~~~~~~--~~~~~l~------------------------------~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a 333 (615)
T TIGR00990 286 LDEETG--NGQLQLG------------------------------LKSPESKADESYEEAARAFEKALDLGKLGEKEAIA 333 (615)
T ss_pred cccccc--cchHHHH------------------------------HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH
Confidence 001000 0000000 0000 0123445555555555432 12334
Q ss_pred hhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 040435 1078 WSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYA 1156 (1991)
Q Consensus 1078 yn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~ 1156 (1991)
|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|+++.|...+..+++.. +.+..++..+...|.
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555555566666666666666665543 343 3345555555566666666666666665543 334566777778888
Q ss_pred hcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1157 KCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
..|++++|...|++..+ | +...|..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|.+.
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHH
Confidence 88999999998887764 3 46677788888889999999999999887642 23466777888888899999999999
Q ss_pred HHHhHHhcCCCCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040435 1234 FNSMVQDHGVEPAL-E-------HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATS 1305 (1991)
Q Consensus 1234 ~~~M~~~~gi~P~~-~-------~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e 1305 (1991)
|+..++ +.|+. . .++.....+...|++++|.+++++.....+.+..++..|...+...|++++|...++
T Consensus 490 ~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 490 FDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 988765 44431 1 112222234446899999999998765444456678889999999999999999999
Q ss_pred HHHhcCCCCch
Q 040435 1306 RILELEAQNSA 1316 (1991)
Q Consensus 1306 ~llel~P~~~~ 1316 (1991)
+++++.+....
T Consensus 567 ~A~~l~~~~~e 577 (615)
T TIGR00990 567 RAAELARTEGE 577 (615)
T ss_pred HHHHHhccHHH
Confidence 99998776443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.6e-11 Score=136.98 Aligned_cols=328 Identities=13% Similarity=0.109 Sum_probs=218.0
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHH-HHHHHHHHHhCCCCchHHHHHH
Q 040435 772 SVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLG--AYYEG-LQVHGYIIRSGLWAVHSVQNSV 848 (1991)
Q Consensus 772 ~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g--~~~~a-~~l~~~~~k~G~~~d~~v~naL 848 (1991)
+++-|.|+.. ...|...++.-+|++|+..|+..+...-..+++..+-.+ ++-.+ .+-|-.|.+.|-... .+
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~-~s---- 189 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST-SS---- 189 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc-cc----
Confidence 4566666654 456888999999999999998888776666665544332 22211 122333333332221 11
Q ss_pred HHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 040435 849 LSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMG 927 (1991)
Q Consensus 849 i~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a 927 (1991)
.| |++.+ ++-+...+...+|..||.|+++-...++|.++|++.... ..+.+..+|+.+|.+-+ +..+
T Consensus 190 ----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 190 ----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred ----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHH----hhcc
Confidence 12 44433 444444456679999999999999999999999999876 67899999999998864 3445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH----hccCC----CCCHhHHHHHHHHHHhcCCHHH-HHHHHH
Q 040435 928 RMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKV----FSEMP----QKNKVSWNSALSGLVVNEKYSE-ALSLLY 998 (1991)
Q Consensus 928 ~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~l----f~~m~----~~dv~s~n~LI~a~~~~g~~~e-Al~lf~ 998 (1991)
+.+..+|+...+.||..++|+++...++.|+++.|++. +.+|+ +|...+|..+|..+.+.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 88999999999999999999999999999998877644 33343 3566666666666666655533 333333
Q ss_pred HHhc----CCCCC----CHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhc
Q 040435 999 SMGK----GVNEV----DEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDV 1070 (1991)
Q Consensus 999 ~M~~----~Gi~P----d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m 1070 (1991)
+.+. ..++| |...|.+.+..|.+..+.+.|.++++.+....- |...|.. +
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N-------------~~~ig~~------~--- 395 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN-------------WKFIGPD------Q--- 395 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------hhhcChH------H---
Confidence 3322 12222 344556666666666666666666654322110 0000100 0
Q ss_pred CCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcc
Q 040435 1071 KKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCL 1141 (1991)
Q Consensus 1071 ~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~ 1141 (1991)
....-|..+....++....+..+..|+.|.-.-+-|+..+...+++|....+.++...+++..++..|.
T Consensus 396 --~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 396 --HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 112335556666777778888889999998888888888998999988888888888888777776663
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=165.94 Aligned_cols=322 Identities=10% Similarity=-0.025 Sum_probs=262.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhc
Q 040435 1012 LVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLC 1088 (1991)
Q Consensus 1012 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~ 1088 (1991)
...++..+-+.|+.+.|..++..++..........+ .|+......|+.+.|...|+++.+ | +...|..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 344566777889999999999998887755544444 455666779999999999999875 3 456788888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHH
Q 040435 1089 GRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKA 1167 (1991)
Q Consensus 1089 g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~l 1167 (1991)
|+.++|+..|++..+. .|+ ...+..+...+...|+.+.|...+..+.+....+.. .+..+ ..+.+.|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999874 565 456677888899999999999999887766543333 33333 347889999999999
Q ss_pred HHhccCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhHH
Q 040435 1168 FDQISRK----NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEE----GLSFFNSMVQ 1239 (1991)
Q Consensus 1168 f~~m~~~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~----A~~i~~~M~~ 1239 (1991)
++.+.+. +...+..+...+...|+.++|+..|+++.+.. +.+...+..+..++...|++++ |...|+..++
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9987652 33445556778899999999999999999754 3356677778888999999986 8999998876
Q ss_pred hcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1240 DHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1240 ~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
+.|+ ...+..+..+|.+.|++++|...+++.....+.+..++..|..++...|++++|...++++++.+|+++..+
T Consensus 279 ---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred ---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 6675 678999999999999999999999998875556778899999999999999999999999999999988877
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1319 LLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
..++.+|...|++++|........
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778999999999999998766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-10 Score=156.75 Aligned_cols=441 Identities=9% Similarity=-0.022 Sum_probs=206.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCC--CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 040435 845 QNSVLSMYVDADMECARKLFDEMCE--RDV-ISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNL 921 (1991)
Q Consensus 845 ~naLi~~yakg~~e~A~~vf~~m~~--~d~-~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~ 921 (1991)
+...|-.+..|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++... ........+..+...+...
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHc
Confidence 4444444445777777777776643 221 1122666666666777777777766642 1111222233334455566
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCC--CHhHHHHHHHHHHh--cCCHHHHHHHH
Q 040435 922 RDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQK--NKVSWNSALSGLVV--NEKYSEALSLL 997 (1991)
Q Consensus 922 g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--dv~s~n~LI~a~~~--~g~~~eAl~lf 997 (1991)
|+++.|.++++.+++.... +..++..|+..|...++.++|+..++++... +...+ +..+|.. .++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~--l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY--MTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH--HHHHHHHHhcchHHHHHHHH
Confidence 6777777777776665432 2445556666666666666666666666543 32233 2233333 34444466666
Q ss_pred HHHhcCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchh
Q 040435 998 YSMGKGVNEVD-EITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVV 1076 (1991)
Q Consensus 998 ~~M~~~Gi~Pd-~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~ 1076 (1991)
++|.+. .|+ ...+.....+..+.|-...|.++... .|+.++-.-+... +.+.|.+..+.-..+
T Consensus 193 ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~--- 256 (822)
T PRK14574 193 SEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLP--- 256 (822)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccc---
Confidence 666543 232 22333444444444444444333221 1111100000000 000000000000000
Q ss_pred hhhHHHHhhhhcCC---hHHHHHHHHHHHHC-CCCCCHHH-----HHHHHHHHhhccChHHHHHHHHHHHHhccccchhH
Q 040435 1077 LWSTMIAGFTLCGR---PREAIAVFQEMNQA-QEKPNAIT-----IINLLEACSVATELSSSKWAHGIAIRRCLAEEVAV 1147 (1991)
Q Consensus 1077 syn~LI~~y~~~g~---~eeAl~lf~~M~~~-Gv~Pd~~T-----~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v 1147 (1991)
.-....+ .+.|+.-++.+... +-.|.... ..-.|-++...++...+...++.+...|.+....+
T Consensus 257 -------~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 257 -------TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred -------cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 0001111 23455555554431 12232111 11233344555555555555555555555444455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCC---------CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------------
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISRK---------NIVSWSAMVAAYGMNGLAHEALALVAEMKLGG------------ 1206 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~~---------d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G------------ 1206 (1991)
--++.++|...+..++|..+|..+... +......|.-+|...+++++|..+++++.+.-
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 556666666666666666666655321 12223455556666666666666666665421
Q ss_pred -CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHH
Q 040435 1207 -LQPNAVT-TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASA 1283 (1991)
Q Consensus 1207 -i~Pd~~T-~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~ 1283 (1991)
..||-.. +..+...+.-.|++.+|++.++.+.. ..| |......+.+++...|+..+|++.++.+....+.+..+
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 0112222 12223344555555555555555543 334 45555555555555555555555554444322333444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1284 WGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1284 ~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
...+..+....|++.+|+.+.+.+++..|+++.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 445555555555555555555555555555553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-09 Score=140.24 Aligned_cols=546 Identities=13% Similarity=0.057 Sum_probs=356.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhh-CCHHHHHH
Q 040435 788 LGEGLWWFYKARVAGFEPNNSILVLVIQACR--CLGAYYEGLQVHGYIIRSG--LWAVHSVQNSVLSMYVD-ADMECARK 862 (1991)
Q Consensus 788 ~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~--~~g~~~~a~~l~~~~~k~G--~~~d~~v~naLi~~yak-g~~e~A~~ 862 (1991)
.+.|...|...++.. ++| ....+.+||. ..+++..|..+|..++... ..+|+.+.-. ..+.+ |+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHH
Confidence 477888887776642 233 2344556665 3457888888888866543 3455543322 23345 77888888
Q ss_pred HHHhcCCCCHHHHHHHHHHH-H--H---cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 040435 863 LFDEMCERDVISWSVMIGGY-V--Q---SAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIY 936 (1991)
Q Consensus 863 vf~~m~~~d~~syn~LI~a~-~--~---~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k 936 (1991)
.|.+..+-|...-++++.-. . . ...+..++.++...-.. -.-|.+..+.|..-+.-.|++..+..+...++.
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 88877554444444433221 1 1 12345566666665543 223455667777777788888888888888876
Q ss_pred cCCCCC--HHHHHHHHHHHHhcCChHHHHHHhccCCC--CC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH
Q 040435 937 RGLGCD--LFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--KN--KVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEI 1010 (1991)
Q Consensus 937 ~g~~pd--~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d--v~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~ 1010 (1991)
....-. ...|--+.++|-..|+++.|...|....+ +| +..+--+...|.+.|+.+.+...|++... ..||..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~ 376 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNY 376 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchH
Confidence 642211 22355677888888888888888876654 22 34455577788888888888888888865 345543
Q ss_pred -HHHHHHHHHhccC----ChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC------HHHHHHHHHhc-CCCchhhh
Q 040435 1011 -TLVNILQICKCFV----HPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHL------VELAWKLFNDV-KKPDVVLW 1078 (1991)
Q Consensus 1011 -T~~~lL~a~~~~g----~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~------l~~A~~lf~~m-~~~d~~sy 1078 (1991)
|...+-..|+..+ ..+.|..+.....+.- ..|...|-.+..+|-...- +..|..++..- ........
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4444444444443 3345555555544443 3455566666666654433 22333222221 23566678
Q ss_pred hHHHHhhhhcCChHHHHHHHHHHHHC---CCCCCH-----HHHHHHHHH-HhhccChHHHHHHHHHHHHhccccchhHHH
Q 040435 1079 STMIAGFTLCGRPREAIAVFQEMNQA---QEKPNA-----ITIINLLEA-CSVATELSSSKWAHGIAIRRCLAEEVAVGT 1149 (1991)
Q Consensus 1079 n~LI~~y~~~g~~eeAl~lf~~M~~~---Gv~Pd~-----~T~~~lL~a-~a~~g~le~a~~i~~~~~k~g~~~d~~v~n 1149 (1991)
|.+..-+...|.+++|...|.+.... -..+|. .|..--+.. .-..++.+.|.+.+..+++.. -
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------p 527 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------P 527 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------c
Confidence 88888888999999999999887654 233444 222222333 335568888888888888764 2
Q ss_pred HHHHHHHhc-------CCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 040435 1150 AVVDMYAKC-------GAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLG-GLQPNAVTTLSVL 1218 (1991)
Q Consensus 1150 aLI~~y~k~-------G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~-Gi~Pd~~T~~~LL 1218 (1991)
..|++|.+. +.+.+|...+..... .+...|+-+...|.....+.-|.+-|+...+. ...+|..+..+|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 345666655 456678888877654 56778888888888888888888866666543 2347888877777
Q ss_pred HHHH------------hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHH
Q 040435 1219 SACS------------HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWG 1285 (1991)
Q Consensus 1219 ~ac~------------~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~ 1285 (1991)
..|. ..+..++|+++|...++ ..| +...-+-+.-.|+..|++.+|.++|.+..+-......+|-
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l 684 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL 684 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee
Confidence 7553 23456778888887765 555 5677778888899999999999999998764344557999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhc--CCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEc
Q 040435 1286 ALLSACRSYGNTELGAGATSRILEL--EAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVD 1358 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel--~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~ 1358 (1991)
.|...|...|++..|+++|+..++. .-+++.....|+.++...|+|.++...... +....|.-+.+..+
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~----a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK----ARHLAPSNTSVKFN 755 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHhCCccchHHhH
Confidence 9999999999999999999999874 334566777889999999999997765442 22334555554444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-10 Score=155.23 Aligned_cols=435 Identities=10% Similarity=0.002 Sum_probs=300.4
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 040435 881 GYVQSAEAFSGLRLFRQMVSGFKNEPDGQ-SLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDT 959 (1991)
Q Consensus 881 a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~-T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~ 959 (1991)
...+.|++..|++.|++..+ ..|+.. ....++..+...|+.++|+..++..+. .-........++...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESK---AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHh---hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCH
Confidence 34688999999999999986 356642 222777777888999999888888871 1122233444446678888999
Q ss_pred HHHHHHhccCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 040435 960 DSAFKVFSEMPQ--K-NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVIL 1036 (1991)
Q Consensus 960 e~A~~lf~~m~~--~-dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~ 1036 (1991)
++|..+|+++.+ | +...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..++.+.++.++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999988865 2 4566677788888889999999998888653 4555555333333333455545777777777
Q ss_pred HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCH---HHH
Q 040435 1037 RRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNA---ITI 1113 (1991)
Q Consensus 1037 ~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~---~T~ 1113 (1991)
+.. +.+...+..++.+..+.|-...|.++..+-+. ..+=..... =+.+.|.+ +.+.+..++. .-|
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a~----~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAAE----QVRMAVLPTRSETERF 264 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHHH----HHhhcccccccchhhH
Confidence 765 34566667777777888887777777665442 211110000 00111222 2211211111 011
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHh-cccc-ch-hHHHHHH---HHHHhcCCHHHHHHHHHhccCC----CHhHHHHHH
Q 040435 1114 INLLEACSVATELSSSKWAHGIAIRR-CLAE-EV-AVGTAVV---DMYAKCGAIEASRKAFDQISRK----NIVSWSAMV 1183 (1991)
Q Consensus 1114 ~~lL~a~a~~g~le~a~~i~~~~~k~-g~~~-d~-~v~naLI---~~y~k~G~~e~A~~lf~~m~~~----d~~s~n~LI 1183 (1991)
. -++.+..-...+... +-.| .. ....+.+ -++.+.|+..++.+.|+.|... ...+--++.
T Consensus 265 ~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 265 D----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred H----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 1 123333333333331 1112 11 1223333 3566789999999999999853 234556788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----------CCCC--
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGG-----LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHG----------VEPA-- 1246 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~G-----i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g----------i~P~-- 1246 (1991)
.+|...+++++|+.+|+++.... ..++......|..|+...+++++|..+++.+.+..- -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997643 122344467889999999999999999999976211 1232
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1247 -LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1247 -~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
...+..++..+...|++.+|++.++++...-|-|..++..+...++..|+...|+..++.+..++|++..+.+.++..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 3456677888999999999999999998777779999999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~m~~ 1343 (1991)
...|+|.+|..+...+.+
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 999999999887655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-10 Score=131.91 Aligned_cols=322 Identities=16% Similarity=0.132 Sum_probs=212.1
Q ss_pred ccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHH-Hh--ccchhhH-HHHHHHHHHhCCCCchHHHHHHHH
Q 040435 674 WNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKA-CS--NLSYIHG-RLVHACLVKQGYESFTSIGNALMD 749 (1991)
Q Consensus 674 cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~a-c~--~~~~~~a-~~i~~~~lk~g~~~d~~~~n~Li~ 749 (1991)
=|.++.. ...|..+++.-+|++|+..|+.. ++.+-..|++. |- +.....+ .+-+-.|-+.|- ....+|
T Consensus 119 E~nL~km-IS~~EvKDs~ilY~~m~~e~~~v-S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW----- 190 (625)
T KOG4422|consen 119 ENNLLKM-ISSREVKDSCILYERMRSENVDV-SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW----- 190 (625)
T ss_pred hhHHHHH-HhhcccchhHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc-----
Confidence 3444444 46778899999999999999743 45554555552 21 2221111 111222222221 112223
Q ss_pred HHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 750 FYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQV 829 (1991)
Q Consensus 750 ~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l 829 (1991)
|.|.+.+ -+|+..| +...+|..||+|+++--..+.|.++|.+.++...+.+..+|+.++.+-+- ..++.+
T Consensus 191 ---K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~L 260 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKL 260 (625)
T ss_pred ---ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHH
Confidence 5565544 4455444 56778999999999999999999999999998889999999999988653 445899
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHH----HHhc----CCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHH
Q 040435 830 HGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKL----FDEM----CERDVISWSVMIGGYVQSAEAFS-GLRLFRQMV 899 (1991)
Q Consensus 830 ~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~v----f~~m----~~~d~~syn~LI~a~~~~G~~~e-Al~lf~~M~ 899 (1991)
..+|+.....||..++|++++..++ |.++.|++. +.+| .+|...+|..+|..+.+.++..+ |..+..+.+
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999999999999999999999 877666554 4455 56888899999998888887744 444444443
Q ss_pred hC-C-----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChHHHHHHhcc
Q 040435 900 SG-F-----KNEP-DGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG----LGCDLFVGNSLIDMYAKCKDTDSAFKVFSE 968 (1991)
Q Consensus 900 ~~-~-----gv~P-d~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g----~~pd~~v~naLI~~y~k~G~~e~A~~lf~~ 968 (1991)
.. . .+.| |..-|.+.+..|.+..+.+.|.++++.+.... +.++.
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~------------------------- 395 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ------------------------- 395 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-------------------------
Confidence 21 0 1223 34567888888888888888988887765321 11110
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 040435 969 MPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFE 1041 (1991)
Q Consensus 969 m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~ 1041 (1991)
....-|.-+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.++...+++..++..|..
T Consensus 396 ---~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 396 ---HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0111233344455555556666666666665556666666666666666666666666666666665543
|
|
| >KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-13 Score=178.64 Aligned_cols=255 Identities=16% Similarity=0.228 Sum_probs=189.5
Q ss_pred CCCCcceEE-EEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhh
Q 040435 362 EDPSLYHYA-IFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSS 438 (1991)
Q Consensus 362 ~~~~~~hi~-~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~ 438 (1991)
.|...|+|+ +++.. -+-.-+++.|+++|++.| +.|.++- .+|++.
T Consensus 1177 ~~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLk------------------------------NyLSPt 1224 (1470)
T KOG1879|consen 1177 KDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLK------------------------------NYLSPT 1224 (1470)
T ss_pred CccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeeh------------------------------hhcChH
Confidence 334478887 44444 346789999999999988 4454443 378899
Q ss_pred hhhHHHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhc
Q 040435 439 YCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWS 517 (1991)
Q Consensus 439 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~ 517 (1991)
+.++++.|.+.....|.+....++.+- +--+-+.=.+++|--||+.-+||- ++||||+|+|-||+.||.||.+
T Consensus 1225 FKe~iP~mA~eYnFeyElv~YkWPrWL------hqQ~EKQRiiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~d 1298 (1470)
T KOG1879|consen 1225 FKESIPHMAKEYNFEYELVQYKWPRWL------HQQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMD 1298 (1470)
T ss_pred HHHHHHHHHHHhCceEEEEEecCchhh------hhhhhhhhhhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHh
Confidence 999999999888888877766554432 111112224599999999999996 9999999999999999999999
Q ss_pred cCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHH-HHHhchhcccccc
Q 040435 518 VDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHY-WQDANEDRTLWKL 596 (1991)
Q Consensus 518 ~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~-~~~~~~~~~~~~~ 596 (1991)
+||+|..+|-++-|... ..+.+|.+|+..+++..+-+ ..|..|..-|+||++.|+..-.+++.- ++..-.+-....-
T Consensus 1299 fdl~GaPygYtPfCdsR-~EMDGyRFWK~GYW~~hL~g-rkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsN 1376 (1470)
T KOG1879|consen 1299 FDLGGAPYGYTPFCDSR-REMDGYRFWKQGYWKKHLRG-RKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSN 1376 (1470)
T ss_pred cccCCCccccCcccccc-ccccchhHHhhhHHHHHhcc-CccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhh
Confidence 99999999999988655 67889999999998887655 789999999999999999666655532 2222222222333
Q ss_pred CCCCch-hhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccc-----cccccccccchh
Q 040435 597 GTLPPG-LITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDL-----AVSKYKPYWSKY 663 (1991)
Q Consensus 597 ~dqd~~-n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~-----a~~~~~~~W~~y 663 (1991)
-|||.- |+...-.++.||..| +++..+.+....+++|+|.-|.+ ||.+. |+ +.-..|..|
T Consensus 1377 LDQDLPNnm~hqVpIkSLPqeW----LWCETWC~d~skkkAktIDLCnN--P~TKEpKL~~A~-Riv~EW~dy 1442 (1470)
T KOG1879|consen 1377 LDQDLPNNMQHQVPIKSLPQEW----LWCETWCDDESKKKAKTIDLCNN--PLTKEPKLDAAR-RIVSEWTDY 1442 (1470)
T ss_pred ccccccccceeecccccCCcch----hhhhhhcCchhhhhchhhhhhcC--ccccchhhHHHh-hhcCCCccc
Confidence 456544 444555899999999 67778887788889999999886 88554 33 334457766
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-10 Score=142.27 Aligned_cols=144 Identities=11% Similarity=0.091 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCH------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISRKNI------VSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPN-AVTTLSV 1217 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~------~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd-~~T~~~L 1217 (1991)
..|..||+..+...++++|..+.++...+|. .-+..+...+.+++...++..++++|.+.-. +|+ ..++--+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5678899999999999999999999887654 4577888888999999999999999987432 222 4456667
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~ 1294 (1991)
+..-...|..+.-.+.++-+. .+|+.-+ .-++....+.++...|.+..+...++.+|.+.....+.+...++
T Consensus 572 lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke 643 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE 643 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh
Confidence 777778888888888887654 4455432 44555667788888888888877666677777666666665543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-07 Score=115.56 Aligned_cols=507 Identities=12% Similarity=0.030 Sum_probs=316.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcC---
Q 040435 793 WWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMC--- 868 (1991)
Q Consensus 793 ~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~--- 868 (1991)
+++++.++. -|+.+ .|=++.....+.+.|+-++...++.- ..+..+| -+|++ .-++.|..++++..
T Consensus 367 RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhC
Confidence 445554443 24433 23455555666666777777776642 2233333 34445 45677777776653
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--
Q 040435 869 ERDVISWSVMIGGYVQSAEAFSGLRLFRQM----VSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCD-- 942 (1991)
Q Consensus 869 ~~d~~syn~LI~a~~~~G~~~eAl~lf~~M----~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd-- 942 (1991)
..+...|-+--.-=-++|+.+....+..+- ..+ |+..+..-|..=..+|-..|..-....|...++..|++-.
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 346677766655556677777777666543 233 6777777777777777777777777777777776665432
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 040435 943 LFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQIC 1019 (1991)
Q Consensus 943 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~ 1019 (1991)
..+|..-...+.+.+.++-|+.+|....+ .+...|...+..=-..|..++...+|.+.... .|
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~p------------ 581 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CP------------ 581 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CC------------
Confidence 34566666667777777777777665544 24455655554444456666666666655432 11
Q ss_pred hccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHH
Q 040435 1020 KCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIA 1096 (1991)
Q Consensus 1020 ~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~ 1096 (1991)
-....|-....-+-..|++..|+.++.+.-+ .+...|-+-+..-..+..+++|..
T Consensus 582 ----------------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 582 ----------------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred ----------------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH
Confidence 1112222222233334555555555544432 133445555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C
Q 040435 1097 VFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K 1174 (1991)
Q Consensus 1097 lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~ 1174 (1991)
+|.+... ..|+...|.--+.----++..++|.++++..++. ++.-...|-.+...|-..++++.|...|..-.+ |
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC
Confidence 5555543 2344443333333333345555555555555543 222234455566666777778888877776654 4
Q ss_pred C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 040435 1175 N-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCM 1253 (1991)
Q Consensus 1175 d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~L 1253 (1991)
+ +..|-.|...--+.|..-.|..++++.+..+ +-|...|...|..-.+.|+.+.|..+..+.+++ ...+...|..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHH
Confidence 3 4567766666667778888888888877654 346667888888888888888888888777764 44456778888
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
|.+..+.++-..+.+.+++.. -|+.+..+....+.....++.|..-|+++++.+|++..++..+-..+...|.-++
T Consensus 794 I~le~~~~rkTks~DALkkce----~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCE----HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHhccCcccchHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 888888887776666666654 3566777777777778888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHcCCcccCcEEEEEEc
Q 040435 1334 SSGTRLLAKERGVKVVAGNSLVHVD 1358 (1991)
Q Consensus 1334 a~~vr~~m~~~gi~k~~g~s~i~v~ 1358 (1991)
-..++.+.... +|.-|..|+-|.
T Consensus 870 ~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 870 QKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHhcc--CCCCCcHHHHHh
Confidence 77777765543 567777887664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-07 Score=120.89 Aligned_cols=615 Identities=10% Similarity=0.056 Sum_probs=310.0
Q ss_pred cCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccchhhHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCchHHH
Q 040435 683 KNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYIHGRLVHACLVKQG-YESFTSIGNALMDFYMKWRFPDSAV 761 (1991)
Q Consensus 683 ~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~~~~a~~i~~~~lk~g-~~~d~~~~n~Li~~y~k~G~~~~A~ 761 (1991)
-.|+.++|.+++.+..+.. |..+..|..|-..+-..|. .-+.+...++..- -+.|...|-.+-......|.++.|+
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd-~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGD-IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3466667777766666554 3344445555444444331 1111222222222 2334556666666666666666666
Q ss_pred HHHhhcCCCChHHHH---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHH
Q 040435 762 AVFDDCICRDSVSWN---IMIQGHLDHGTLGEGLWWFYKARVAGFEPNNS----ILVLVIQACRCLGAYYEGLQVHGYII 834 (1991)
Q Consensus 762 ~lfd~m~~~d~~s~n---~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~----ty~~lL~a~~~~g~~~~a~~l~~~~~ 834 (1991)
-.|.+..+.+..-|- --+..|-+.|+...|++-|.+|.+...+.|-. +--.+++.+...++.+.|.+.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666655432222222 22334555666666666666665543211111 11122333333333344444443333
Q ss_pred HhC-CCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------------
Q 040435 835 RSG-LWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSG------------ 901 (1991)
Q Consensus 835 k~G-~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~------------ 901 (1991)
..+ -..+... +|.++..|.....++.|+.....+...
T Consensus 308 s~~~~~~~~ed------------------------------~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 308 SKEKDEASLED------------------------------LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred hhccccccccH------------------------------HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 311 1122233 334444444444444444444444330
Q ss_pred --------------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 902 --------------FKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG--LGCDLFVGNSLIDMYAKCKDTDSAFKV 965 (1991)
Q Consensus 902 --------------~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g--~~pd~~v~naLI~~y~k~G~~e~A~~l 965 (1991)
.++.++... ..+.-++.+....+....+...+.+.. ..-+...|.-+.++|...|++.+|.++
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 011122212 112222344555555555666666665 333455677777777777777777777
Q ss_pred hccCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHH----
Q 040435 966 FSEMPQ----KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEI-TLVNILQICKCFVHPMECKSVHCVIL---- 1036 (1991)
Q Consensus 966 f~~m~~----~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~-T~~~lL~a~~~~g~~~~a~~i~~~~~---- 1036 (1991)
|..+.. .+...|--+..+|...|..++|.+.|..... ..|+.. .-.++-..+...|+.++|.++++.+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 777654 2556777777777777777777777777755 234322 22233334456677777777666633
Q ss_pred ----HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--------------------------CchhhhhHHHHhhh
Q 040435 1037 ----RRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--------------------------PDVVLWSTMIAGFT 1086 (1991)
Q Consensus 1037 ----~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--------------------------~d~~syn~LI~~y~ 1086 (1991)
..+..|+....--..+.|.+.|+.++=..+-..|.. .....--.++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 223445555555566677777776654333333221 00111111222222
Q ss_pred hcCChHHHH------HHHHHHHHCCCCCCHH--HHHHHHHHHhhccChHHHHHHHHHHHHhcc--ccch---hHHHHHHH
Q 040435 1087 LCGRPREAI------AVFQEMNQAQEKPNAI--TIINLLEACSVATELSSSKWAHGIAIRRCL--AEEV---AVGTAVVD 1153 (1991)
Q Consensus 1087 ~~g~~eeAl------~lf~~M~~~Gv~Pd~~--T~~~lL~a~a~~g~le~a~~i~~~~~k~g~--~~d~---~v~naLI~ 1153 (1991)
+.++..... ..+.--...|+.-+.. -+.-++.+.++.+..++|..+...+..... .++. ..-...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 222211100 1111111222222222 244555566677777777777666655421 1111 22334455
Q ss_pred HHHhcCCHHHHHHHHHhccCC-----C---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHh
Q 040435 1154 MYAKCGAIEASRKAFDQISRK-----N---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA--CSH 1223 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~~-----d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a--c~~ 1223 (1991)
+....+++..|...+..|... + ...||...+.+.++|+-.--..++..... .+|+..-...++.+ ...
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~ 752 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFV 752 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhh
Confidence 555667777777776666532 2 24666666666666544333333333222 22222112222222 234
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHH-HHHHHHH----------HcCCHHHHHHHHHHCccCCCC--CHHHHHHHHHH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEPALEHYS-CMVDMLA----------RAGELDIAIDLINQMPDNLKA--TASAWGALLSA 1290 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P~~~~y~-~Li~~l~----------r~G~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~a 1290 (1991)
.+.+.-|++.+-.... ..|+...++ ||.-++. |.-.+-.+..++.+..+.-.+ -..+...+..+
T Consensus 753 ~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRa 829 (895)
T KOG2076|consen 753 NASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRA 829 (895)
T ss_pred ccchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5667778877665544 566633322 2222221 112234566666655442122 45788899999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCC------------chHHHHHHHHHHhCCCchhHHHHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQN------------SAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~------------~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
|..-|=+..|+..|+++++..|.+ -.+-..|.-+|-++|...-|..+.
T Consensus 830 yh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 830 YHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQIL 889 (895)
T ss_pred HHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHH
Confidence 999999999999999999997643 123456788999999988877654
|
|
| >KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-13 Score=167.39 Aligned_cols=262 Identities=21% Similarity=0.294 Sum_probs=187.9
Q ss_pred chHHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEE
Q 040435 1716 VVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLI 1795 (1991)
Q Consensus 1716 ~~~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvi 1795 (1991)
++..++++...++|.+|.||-|.+|++++++.++||+|+...++|||.++|||..++|-.+|.+|-.+--...-=+.|+.
T Consensus 54 ~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~GgRl~~El~yt~~lgee~~~~~Q~l 133 (1143)
T KOG1935|consen 54 YLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEGGRLSEELNYTPELGEENGLTGQLL 133 (1143)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhccchhHhhccccccchhcCCCceeE
Confidence 47888889999999999999999999999999999999999999999999999999999999999844433333355999
Q ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccccccCCccccccccccccCC---------------CCCCcccHHHH
Q 040435 1796 LATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPLG---------------EDCASQSVLQY 1860 (1991)
Q Consensus 1796 i~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~~~~~~~~~tl~DiC~kp~~---------------~~C~i~S~l~y 1860 (1991)
|+++. .++.|||+++.|.+.+++-..+..+.|..-|+++++.||||||-+ -.|.+..+++.
T Consensus 134 IQTp~----~eg~niL~~eaLl~Hle~~~~as~v~V~ly~~~W~L~diC~kp~~ps~e~g~i~~ii~kliPCiiITPlDC 209 (1143)
T KOG1935|consen 134 IQTPS----FEGANILTPEALLQHLELMLEASTVEVSLYNETWTLSDICFKPGGPSFESGYIEQILDKLIPCIIITPLDC 209 (1143)
T ss_pred EECCC----cCCcccCChHHHHHHHHHHHhhheeEEEEecCcccHhHhhcCCCCCccccchHHHHHHHhcCeeEecchhh
Confidence 98843 356799999999999999999999999888889999999999754 16999989887
Q ss_pred hhcCcC-----------------CCCCcc-------------Cc--------cc---ccccccccCCCcccccc-----C
Q 040435 1861 FKMDPE-----------------NYDSYG-------------GI--------EH---AEYCFQHYASSDTCLSA-----F 1894 (1991)
Q Consensus 1861 f~~~~~-----------------~~~~~~-------------~~--------~~---~~~c~~~~~~~~~c~~~-----~ 1894 (1991)
|-.... ++++.. +. .| -.-|.+ |..| .|-++ .
T Consensus 210 fWeGakllgp~a~~~g~p~l~Wtnl~P~~vi~e~~~~f~l~~~~~~~~rA~ig~gYmdrPCl~-Pldp-~CP~sApn~~s 287 (1143)
T KOG1935|consen 210 FWEGAKLLGPNAYLPGLPPLRWTNLNPTSVIEELGTLFDLESIEEFFERAGIGHGYMDRPCLN-PLDP-ECPPSAPNKNS 287 (1143)
T ss_pred hcccccccCcceeccCCCCcccccCCHHHHHHHHhhhcCcchHHHHHHHhccCccccCCCCCC-CCCC-CCCCCCccccC
Confidence 752221 111110 00 00 012432 3332 13221 1
Q ss_pred CCCCCcc--------------------cccCCcc---CCCcccccEEEEEEEecc---------------CCC-cchHhh
Q 040435 1895 KAPLDPS--------------------TVLGGFS---GNNYSEASAFIITYPVNN---------------AID-ETSKEN 1935 (1991)
Q Consensus 1895 g~pv~~~--------------------~~lGG~~---~~~~~~A~A~~lty~l~n---------------~~~-~~~~~~ 1935 (1991)
-+|.+-+ +++||.. .+...+|.|++-+|+|-. |.. ..+..-
T Consensus 288 ~q~pd~a~~ltGGC~Gfa~k~mhWpEelIlGg~~R~~~GkL~~A~ALQsvfllmsp~~~y~~fk~~~~~~h~gw~~~~a~ 367 (1143)
T KOG1935|consen 288 PQPPDYAAELTGGCHGFASKVMHWPEELILGGPRRDKKGKLVSAEALQSVFLLMSPKDVYERFKGDYTVHHLGWNEEKAA 367 (1143)
T ss_pred CCCCCHHHHhcCCcchhhhhhcCCcHHHhcCCcccCCCCccchHHHHHHHHHhcCHHHHHHHHhCCccccCCCCcHHHHH
Confidence 1222222 2455543 356789999998887731 111 122334
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCeEEEEEecccHHHHHhhhhcccccEE
Q 040435 1936 RKAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTI 1987 (1991)
Q Consensus 1936 ~~a~~WE~~f~~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~s~~dv~~~ 1987 (1991)
+.-.+|.+.|.+.+.+-. .+..-+|.-+++.|+.|-|++=+.-....|
T Consensus 368 ~vl~awQrnf~~~~~~~~----~~~~~~ih~fsStsldDiL~~Fs~~s~~~i 415 (1143)
T KOG1935|consen 368 EVLQAWQRNFTKRVYQHL----ANERRQIHPFSSTSLDDILEEFSQFSAISI 415 (1143)
T ss_pred HHHHHHHHHHHHHHHHHh----hhhcceecccccccHHHHHHHhcccchHHH
Confidence 566789999999987642 225678999999999999998665544433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-08 Score=124.68 Aligned_cols=557 Identities=13% Similarity=0.072 Sum_probs=342.7
Q ss_pred HHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHH
Q 040435 750 FYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEP-NNSILVLVIQACRCLGAYYE 825 (1991)
Q Consensus 750 ~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~P-d~~ty~~lL~a~~~~g~~~~ 825 (1991)
.|++ |++++|.+++.++.. ++...|-+|-..|-+.|+.+.++..+-. ...+.| |..-|..+-.-....|.++.
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll--AAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL--AAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH--HHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3455 999999999998864 4678999999999999999998877643 333334 56788888888899999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHcCChHHHHHHHH
Q 040435 826 GLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDV--------ISWSVMIGGYVQSAEAFSGLRLFR 896 (1991)
Q Consensus 826 a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~--------~syn~LI~a~~~~G~~~eAl~lf~ 896 (1991)
|.-.+..+++.....-...| --..+|-+ |+...|..-|.++-+.+. ..---++..+...+.-+.|++.+.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~-ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIY-ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998644333333 33567777 999888888877733211 122234566677777788888888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---------------------------CCCCHHHHHHH
Q 040435 897 QMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG---------------------------LGCDLFVGNSL 949 (1991)
Q Consensus 897 ~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g---------------------------~~pd~~v~naL 949 (1991)
......+-..+..+++.++..+......+.|......+..+. +.++..+. -+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 877643444555566777777777777777766555554422 22233331 11
Q ss_pred HHHHH--hcCChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 040435 950 IDMYA--KCKDTDSAFKVFSEMPQ----KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFV 1023 (1991)
Q Consensus 950 I~~y~--k~G~~e~A~~lf~~m~~----~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g 1023 (1991)
+-++. +.+...+++.-|-.... -++..|.-+..+|.+.|++.+|+.+|..+...-..-+...|..+-+++-..+
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 11222 33334444433322221 2455677788888899999999999988877655556677888888888888
Q ss_pred ChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchh-----hh-------hHHHHhhhhcCCh
Q 040435 1024 HPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVV-----LW-------STMIAGFTLCGRP 1091 (1991)
Q Consensus 1024 ~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~-----sy-------n~LI~~y~~~g~~ 1091 (1991)
..++|.+.+..++... +.+..+--+|-..|-+.|+.++|.+.+..|..||.. .| -.....|.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 8888888888887764 234455567777888888888888888887765521 11 1223445556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHH--
Q 040435 1092 REAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFD-- 1169 (1991)
Q Consensus 1092 eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~-- 1169 (1991)
++=+.+-.+|...+ .....+. - +..+.+.. .....+........-.++.+-.+.++.....+-..
T Consensus 543 E~fi~t~~~Lv~~~------~~~~~~f--~---~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 543 EEFINTASTLVDDF------LKKRYIF--P---RNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHHHHHH------HHHHHhc--c---hHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 66555555554321 0000000 0 00000000 00000011112222233333333333222211111
Q ss_pred ------hccC---CCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHHHhcCCHHHHHHHH
Q 040435 1170 ------QISR---KNI-VSWSAMVAAYGMNGLAHEALALVAEMKLGGL--QPNAV--TT-LSVLSACSHGGLVEEGLSFF 1234 (1991)
Q Consensus 1170 ------~m~~---~d~-~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi--~Pd~~--T~-~~LL~ac~~~G~~e~A~~i~ 1234 (1991)
.... .|. ..+.-+|..+++.++.++|+.+...+....+ .++.. .+ ...+.++...++...|..++
T Consensus 610 ~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 610 TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111 122 2345567889999999999999998886542 22221 22 33455667899999999999
Q ss_pred HHhHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHCccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1235 NSMVQDHGVEPA---LEHYSCMVDMLARAGELDIAIDLINQMPDN----LKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1235 ~~M~~~~gi~P~---~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
+.|+..++...+ ...|++....+.+.|+-.-=.+++...... .+|-...++.. ....+.+.-|...+-++
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~---~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHN---LFVNASFKHALQEYMRA 766 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechh---HhhccchHHHHHHHHHH
Confidence 999887665544 356776666677666554444555443321 12222222222 34566778899999999
Q ss_pred HhcCCCCchHHHHHHHHHHhC
Q 040435 1308 LELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1308 lel~P~~~~~yvlL~~lya~~ 1328 (1991)
+...|++|..-..|+.++-+.
T Consensus 767 ~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 767 FRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHhCCCCcHHHHHHHHHHHHH
Confidence 999999998877777665543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-09 Score=131.68 Aligned_cols=534 Identities=10% Similarity=0.021 Sum_probs=291.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCC
Q 040435 793 WWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERD 871 (1991)
Q Consensus 793 ~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d 871 (1991)
.++-.|...|+.|+.+||.+++.-|+..|+++.|- ++..|.-..+.....++++++..... ++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45566777888888888888888888888888777 88877777777777778888777666 6666655 677
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH-HHh------CCCCCCCHHHHHHHHHHHHccC-C------hHHHHHHHHHHHHc
Q 040435 872 VISWSVMIGGYVQSAEAFSGLRLFRQ-MVS------GFKNEPDGQSLVSVLKACTNLR-D------LTMGRMVHGLVIYR 937 (1991)
Q Consensus 872 ~~syn~LI~a~~~~G~~~eAl~lf~~-M~~------~~gv~Pd~~T~~~lL~a~~~~g-~------~~~a~~l~~~m~k~ 937 (1991)
..+|+.|..+|.+.|+... ++..++ |.. ..|+.--..-|-..+..|-+.- + ..--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 211 0011111111222222211100 0 00011222333333
Q ss_pred CCC-CCHHHHHH---HHHHHH-hcCChHHHHHHhccCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHH
Q 040435 938 GLG-CDLFVGNS---LIDMYA-KCKDTDSAFKVFSEMP-QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEIT 1011 (1991)
Q Consensus 938 g~~-pd~~v~na---LI~~y~-k~G~~e~A~~lf~~m~-~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T 1011 (1991)
+.. |...-++. .++-.. -...+++-........ .++..++.+++..-..+|+.+.|..++.+|.+.|+..+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 211 11000000 111111 1122333333323333 37888999999998999999999999999999999888888
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCCh
Q 040435 1012 LVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRP 1091 (1991)
Q Consensus 1012 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~ 1091 (1991)
|..+|-+ .++......+..-|...|+.|+..|+.--+-...+.|....+.+..+.-.--....+..+..|...+.+.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 8887765 6777888888888888999999988887666666655533322221110001122233333332222222
Q ss_pred H-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHH
Q 040435 1092 R-----EAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRK 1166 (1991)
Q Consensus 1092 e-----eAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~ 1166 (1991)
+ -....+++..-.|+.-....| ++..-....|.-+...++.+.+..--...+. .-+++| .+.+.+
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~----~~V~a~-----~~~lrq 388 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSG----QNVDAF-----GALLRQ 388 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCc----chHHHH-----HHHHHH
Confidence 1 122222332233433333222 2222222345555555555554332211111 111111 123445
Q ss_pred HHHhccCCCHh-HHHHHHHHHHH---cCCHHHHHHHHHHH------------HH----CCCCC-------CHHHHHHHHH
Q 040435 1167 AFDQISRKNIV-SWSAMVAAYGM---NGLAHEALALVAEM------------KL----GGLQP-------NAVTTLSVLS 1219 (1991)
Q Consensus 1167 lf~~m~~~d~~-s~n~LI~ay~~---~G~~~eAl~lf~eM------------~~----~Gi~P-------d~~T~~~LL~ 1219 (1991)
.|.+...+... .++ .-.+... .....+..++.... .. .-..| =...-+.++-
T Consensus 389 yFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 55555443221 222 1111111 11111111111111 00 00111 0112344555
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCCCHHHHHHHHHHHHHcCC
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN---LKATASAWGALLSACRSYGN 1296 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~pd~~~~~~Ll~a~~~~g~ 1296 (1991)
+|.+.-+..+++..-+.. +.+ +-| ..|..||+.+.+..++++|..+.++.... +.-|..-+..+..-..+++.
T Consensus 468 ~l~se~n~lK~l~~~eky-e~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKY-EDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 666665666666544433 221 222 67999999999999999999999988642 33355567788888899999
Q ss_pred hhHHHHHHHHHHh---cCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEE
Q 040435 1297 TELGAGATSRILE---LEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSL 1354 (1991)
Q Consensus 1297 ~e~A~~~~e~lle---l~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~ 1354 (1991)
...+..+.+++.+ ..|.-......+.|--+..|.-+...++...+...|+.- .|.-|
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 9889888888766 233334556667777788899888888888899999866 35444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-07 Score=111.57 Aligned_cols=399 Identities=12% Similarity=0.064 Sum_probs=304.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHH
Q 040435 920 NLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSL 996 (1991)
Q Consensus 920 ~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~l 996 (1991)
...+.+.|+-++...++.- +.+.. |.-+|++...++.|.+++....+ .+...|.+-..-=-++|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555544431 11222 33344555556667666665543 3666776655555567777777666
Q ss_pred HHH----HhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCc--hhhhhhHHHHHHhcCCHHHHHHHHHhc
Q 040435 997 LYS----MGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESN--ELVLNSLIDGYSKCHLVELAWKLFNDV 1070 (1991)
Q Consensus 997 f~~----M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d--~~v~naLI~~y~k~G~l~~A~~lf~~m 1070 (1991)
+.+ +...|+..+...|..=..+|-..|..-.+..|...++..|++.. ..+|+.-...+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 654 46678999999888888899999999999999998888887643 457888888899999999999999887
Q ss_pred CC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhH
Q 040435 1071 KK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAV 1147 (1991)
Q Consensus 1071 ~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v 1147 (1991)
.+ .+...|...+..=-.+|..++...+|++.... +.-....+.......-..|++..|+.++..+...... +..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 75 46678888877777789999999999998875 3333444444445556789999999999999887643 7778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHG 1224 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~ 1224 (1991)
+-+-+..-.....++.|+.+|.+... ++...|.--+...--.+..++|++++++.++ .-|+-. .|..+...+...
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHH
Confidence 88889999999999999999998864 6777888777777788999999999999887 346654 566777788899
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
++++.|.+.|..=.+ .-| .+..|-.|.++=-+.|.+-.|..++++..-+.+.+...|-..+..-.++|+.++|+.+
T Consensus 699 ~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 999999998875543 345 4678999999999999999999999998877788999999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1304 TSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1304 ~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
..++++--|.+...+.--..+....++
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCccc
Confidence 999999999876655544444444444
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-11 Score=144.11 Aligned_cols=252 Identities=15% Similarity=0.109 Sum_probs=117.4
Q ss_pred hhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHH
Q 040435 1084 GFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLE-ACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIE 1162 (1991)
Q Consensus 1084 ~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~-a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e 1162 (1991)
.+.+.|++++|++++++-......|+...|-.++. .+...++.+.|...++.+...+.. +...+..++.. ...++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccc
Confidence 34444555555555533322211233333333222 222344555555555555544322 34445556666 5778888
Q ss_pred HHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1163 ASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG-LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1163 ~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G-i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
+|.+++...-+ ++...+..++..+.+.|+++++.+++++..... .+.+...|..+...+.+.|+.++|.+.+++.++
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99888876643 566778888899999999999999999987543 345667777888888999999999999999987
Q ss_pred hcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1240 DHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1240 ~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
..|+ ......++.++...|+.++|.++++......+.|+..|..+..++...|+.+.|...++++++..|+|+...
T Consensus 175 ---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 ---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp ---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred ---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 5785 778889999999999999999999887664456778999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHH
Q 040435 1319 LLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
..++.++...|+.++|..+++.
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHT--------------
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999998874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-07 Score=104.61 Aligned_cols=274 Identities=13% Similarity=0.070 Sum_probs=199.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCchhhhhH----HH-HhhhhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccC
Q 040435 1052 DGYSKCHLVELAWKLFNDVKKPDVVLWST----MI-AGFTLCG-RPREAIAVFQEMNQAQEKPNAITIINLLEACSVATE 1125 (1991)
Q Consensus 1052 ~~y~k~G~l~~A~~lf~~m~~~d~~syn~----LI-~~y~~~g-~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~ 1125 (1991)
.-|.+.|+++.|.+++.-..+.|..+-.+ |- --|.+-| ++.+|...-+...... +-+......--+..-..|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 35778999999999988887655443222 21 1222222 3445554444332211 1111111111111224689
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS---RKNIVSWSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~---~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
+++|...+.+++...-.....+||. .-.|-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999887765555555553 335678899999999998765 367777777888898899999999999766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH
Q 040435 1203 KLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA 1281 (1991)
Q Consensus 1203 ~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~ 1281 (1991)
... ++.|.....-|...|-+.|+-.+|.+++-.- |..-| +.++..-|..-|....-+++|..+|++..- +.|+.
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~~ 659 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPNQ 659 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCccH
Confidence 542 4446677788888999999999999987643 44555 788888888888999999999999998764 78999
Q ss_pred HHHHHHHHHH-HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCch
Q 040435 1282 SAWGALLSAC-RSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWV 1332 (1991)
Q Consensus 1282 ~~~~~Ll~a~-~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ 1332 (1991)
+-|-.++..| ++.||+..|...|+.+...-|++..-.-.|..++...|.-+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 9999999877 56899999999999999999999998889999998888754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-06 Score=97.42 Aligned_cols=475 Identities=10% Similarity=0.015 Sum_probs=326.8
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHH
Q 040435 855 ADMECARKLFDEMC---ERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQ-SLVSVLKACTNLRDLTMGRMV 930 (1991)
Q Consensus 855 g~~e~A~~vf~~m~---~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~-T~~~lL~a~~~~g~~~~a~~l 930 (1991)
+++..|+.+|++.. .++...|---+..=.++.....|..++++.... .|-.. -+---+-.=-..|++..|+++
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46778888888763 356777777777778888888888888887653 33321 111122222346788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 040435 931 HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEM--PQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVD 1008 (1991)
Q Consensus 931 ~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m--~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd 1008 (1991)
|..-.+ .+|+...|.+.|+.=.+-..++.|+.++++. ..|++.+|---..-=.++|+...|..+|....+. -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 887764 5788888888888888888888888888874 4688888877777777788888888888776542 122
Q ss_pred HHHHHHHHHHHh----ccCChhhHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCH---HHHHHH-----HHhcCC---
Q 040435 1009 EITLVNILQICK----CFVHPMECKSVHCVILRRAFES-NELVLNSLIDGYSKCHLV---ELAWKL-----FNDVKK--- 1072 (1991)
Q Consensus 1009 ~~T~~~lL~a~~----~~g~~~~a~~i~~~~~~~g~~~-d~~v~naLI~~y~k~G~l---~~A~~l-----f~~m~~--- 1072 (1991)
...-..++.+++ +....+.|..++..++..-... ....|..+...=-+-|+. +++.-- ++.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 333333444443 3456777888888877653222 134455554444445553 333322 222222
Q ss_pred CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH---HhhccChHHHHHHHHHHHHhccc
Q 040435 1073 PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI-------TIINLLEA---CSVATELSSSKWAHGIAIRRCLA 1142 (1991)
Q Consensus 1073 ~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-------T~~~lL~a---~a~~g~le~a~~i~~~~~k~g~~ 1142 (1991)
-|-.+|--.+..-...|+.+...++|++.... +.|-.. .|.-+=-+ =....+.+.+++++...++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 35567777777777789999999999998764 555321 12111112 2356788899999999888 456
Q ss_pred cchhHHHHHHHHHH----hcCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040435 1143 EEVAVGTAVVDMYA----KCGAIEASRKAFDQIS--RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLS 1216 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~----k~G~~e~A~~lf~~m~--~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~ 1216 (1991)
....++.-+=-||+ ++.++..|.+++.... .|-..++...|..-.+.+.++....+|++.++-+ +-|..+|..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 66777777766776 5789999999998765 3777888888888889999999999999999854 346778887
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH----
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR---- 1292 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~---- 1292 (1991)
....-...|+.++|..+|+..+....++-....|.+.|+.=...|.++.|..+++++.++ .+...+|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-cccchHHHhHHHHhccccc
Confidence 777777899999999999988765444444567888888888999999999999999874 334558887765443
Q ss_pred -HcC-----------ChhHHHHHHHHHHh----cCCCCchHHHHH---HHHHHhCCCchhHHHHHHHH
Q 040435 1293 -SYG-----------NTELGAGATSRILE----LEAQNSAGYLLA---SSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1293 -~~g-----------~~e~A~~~~e~lle----l~P~~~~~yvlL---~~lya~~G~~~ea~~vr~~m 1341 (1991)
..+ +...|..+|+++.. .+|. ..-..+| -+.=...|.-.+...|...|
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~K-eeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPK-EERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 334 56788888888865 3332 2222333 34555668777877887766
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=125.39 Aligned_cols=201 Identities=15% Similarity=0.152 Sum_probs=144.6
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
...+|.++...|.-+++.+.|++.|++..+ +.|+ ..+.|+.+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~----------------------------------faYayTLlGh 463 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPR----------------------------------FAYAYTLLGH 463 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCc----------------------------------cchhhhhcCC
Confidence 456788888888888888888888877654 2331 1223333333
Q ss_pred HHHhcCCHHHHHHHHHhccCCCHhHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISRKNIVSWSA---MVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEE 1229 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~~d~~s~n~---LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~ 1229 (1991)
-+.....+|.|...|......|...||+ |...|.+.++.+.|+-.|++..+ +.| +.+....+...+.+.|..|+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhH
Confidence 4444566778888888777766665555 45678888888999888888876 445 44555666667778888899
Q ss_pred HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040435 1230 GLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRIL 1308 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ll 1308 (1991)
|+++++++.. ++| ++-.--..+..+...+++++|+..++++++-.+.+..++..|...|++.|+.+.|..-+--++
T Consensus 542 AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 542 ALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 9998888765 566 344444456667778888999988888887555567777778888888888888888888888
Q ss_pred hcCCCCc
Q 040435 1309 ELEAQNS 1315 (1991)
Q Consensus 1309 el~P~~~ 1315 (1991)
+++|.-.
T Consensus 619 ~ldpkg~ 625 (638)
T KOG1126|consen 619 DLDPKGA 625 (638)
T ss_pred cCCCccc
Confidence 8888643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-07 Score=110.04 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
.+...+.+.|+-.++.++|...|++..+ .....|+.|..-|....+...|++-++..++-. +-|-..|-.|..+|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 4455667788888999999999998875 356789999999999999999999999998753 448889999999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
-.+...=|+-+|++..+ ++| |...|.+|.+.|.+.++++||++.+.+.......+..++..|...+...++.++|.
T Consensus 410 im~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999998865 788 68999999999999999999999999987543445689999999999999999999
Q ss_pred HHHHHHHh-------cCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1302 GATSRILE-------LEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1302 ~~~e~lle-------l~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
..+++-++ .+|+...+...|++-+.+.++|++|..
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 99999888 445555666778999999999999775
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-07 Score=118.23 Aligned_cols=286 Identities=11% Similarity=0.009 Sum_probs=183.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhh--hhHHHHHHhcCCHHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVL--NSLIDGYSKCHLVELAW 1064 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~--naLI~~y~k~G~l~~A~ 1064 (1991)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+...+..+.+.. |+...+ -.....+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 356666665555443321111 1112222233345555555555555554432 332222 23356677788888888
Q ss_pred HHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcc
Q 040435 1065 KLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCL 1141 (1991)
Q Consensus 1065 ~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~ 1141 (1991)
..++++.+ .+......+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 88887764 34556677778888888888888888888876544322 111000
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1142 AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL 1218 (1991)
Q Consensus 1142 ~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL 1218 (1991)
...+..++....+..+.+...++++.+.+ .+......+..++...|+.++|.+++++..+. .||.. ..++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHH
Confidence 00111222222333445566666666653 46778888888899999999999999888773 45552 1233
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
.+....++.+++.+..+...+. .| |...+.++..++.+.|++++|.+.|+.+.+ ..|+...+..|...+...|+.
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-QRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCH
Confidence 3444568889999998888763 45 466788888999999999999999998876 478888888888899999999
Q ss_pred hHHHHHHHHHHhcC
Q 040435 1298 ELGAGATSRILELE 1311 (1991)
Q Consensus 1298 e~A~~~~e~llel~ 1311 (1991)
++|...+++.+++-
T Consensus 378 ~~A~~~~~~~l~~~ 391 (398)
T PRK10747 378 EEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999888754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-05 Score=95.96 Aligned_cols=526 Identities=13% Similarity=0.123 Sum_probs=278.4
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHhhcCC-----CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040435 741 TSIGNALMDFYMKWRFPDSAVAVFDDCIC-----RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQ 815 (1991)
Q Consensus 741 ~~~~n~Li~~y~k~G~~~~A~~lfd~m~~-----~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~ 815 (1991)
+.+|-.-+....+.|++-.-++.|++... .....|...|.-..+.|-++-++.+|++.++- ++..-..-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 35666677778899999999999987532 24456888888888899999999999998763 3334667778
Q ss_pred HHHhcCChHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhh----CCHHHHHHHHHhcCCC--C--HHHHHHHHHH
Q 040435 816 ACRCLGAYYEGLQVHGYIIRSG------LWAVHSVQNSVLSMYVD----ADMECARKLFDEMCER--D--VISWSVMIGG 881 (1991)
Q Consensus 816 a~~~~g~~~~a~~l~~~~~k~G------~~~d~~v~naLi~~yak----g~~e~A~~vf~~m~~~--d--~~syn~LI~a 881 (1991)
-++..+++++|.+.++.++... ...+.-.|.-+-+..++ +.--....++..+..+ | ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8889999999999988876432 13444566666666665 2222334455555443 3 4689999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChH
Q 040435 882 YVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYR-GLGCDLFVGNSLIDMYAKCKDTD 960 (1991)
Q Consensus 882 ~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~-g~~pd~~v~naLI~~y~k~G~~e 960 (1991)
|.+.|.+++|.++|.+.... ..+..-|+.+..+++.......+..+- ..... |-+-+.. +++
T Consensus 258 YIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~ 320 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLE 320 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHH
Confidence 99999999999999988763 344556777777776543222221111 01111 1111111 122
Q ss_pred HHHHHhccCC---------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------HHHHHHHHHHH
Q 040435 961 SAFKVFSEMP---------------QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVD------EITLVNILQIC 1019 (1991)
Q Consensus 961 ~A~~lf~~m~---------------~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd------~~T~~~lL~a~ 1019 (1991)
-.+.-|+.+. ..++..|..-+.. ..|+..+-...|.+..+. +.|- ...|..+-+-|
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHH
Confidence 2222232222 1255566554442 346666667777666442 2221 12355556666
Q ss_pred hccCChhhHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcCC-CchhhhhHHHHhhhhcCChHHHH
Q 040435 1020 KCFVHPMECKSVHCVILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVKK-PDVVLWSTMIAGFTLCGRPREAI 1095 (1991)
Q Consensus 1020 ~~~g~~~~a~~i~~~~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~~-~d~~syn~LI~~y~~~g~~eeAl 1095 (1991)
-+.|+++.|+.+|+...+..++.- ..+|..-..+=.+..+++.|+++.+.... |.... ..|..++..-++
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~- 471 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQA- 471 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHH-
Confidence 677777777777777766554322 33455445555556666677766665432 11100 111111111110
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 040435 1096 AVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-- 1173 (1991)
Q Consensus 1096 ~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-- 1173 (1991)
.+++ +...++..+.---..|-++..+.+++.++...+.....+.|- ...+-...-++++.++|++-..
T Consensus 472 rlhr---------SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 472 RLHR---------SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHH---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccC
Confidence 0000 111222222222333445555555555555444322222221 1111223334555555554332
Q ss_pred --CCH-hHHHHHHHHHHH-c--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhHH------
Q 040435 1174 --KNI-VSWSAMVAAYGM-N--GLAHEALALVAEMKLGGLQPNAVTTLSVLSAC--SHGGLVEEGLSFFNSMVQ------ 1239 (1991)
Q Consensus 1174 --~d~-~s~n~LI~ay~~-~--G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac--~~~G~~e~A~~i~~~M~~------ 1239 (1991)
|++ ..||.-+.-+.+ . .+.+.|..+|++.++ |.+|...-+..|+.|- ...|....|+.++++...
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~ 620 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ 620 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH
Confidence 333 245544433332 1 135555555555554 4444443333333221 123444444444444321
Q ss_pred --------------hcCC-------------CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHCccCCCC--CHHHHHHH
Q 040435 1240 --------------DHGV-------------EPALE---HYSCMVDMLARAGELDIAIDLINQMPDNLKA--TASAWGAL 1287 (1991)
Q Consensus 1240 --------------~~gi-------------~P~~~---~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p--d~~~~~~L 1287 (1991)
-+|+ -|+.. ..--..++=.+.|..+.|..++.-..+-..| +...|.+-
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTW 700 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHH
Confidence 1222 23211 1122344555678888888887766553333 56677777
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1288 LSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
-.--.+|||-+ -++.|+.+.
T Consensus 701 k~FEvrHGned----T~keMLRik 720 (835)
T KOG2047|consen 701 KEFEVRHGNED----TYKEMLRIK 720 (835)
T ss_pred HHHHHhcCCHH----HHHHHHHHH
Confidence 77777888833 344455443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-07 Score=120.34 Aligned_cols=273 Identities=8% Similarity=-0.001 Sum_probs=197.7
Q ss_pred cCCHHHHHHHHHhcCCC--c-hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhhccChHHHHH
Q 040435 1057 CHLVELAWKLFNDVKKP--D-VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITII--NLLEACSVATELSSSKW 1131 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~~--d-~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~--~lL~a~a~~g~le~a~~ 1131 (1991)
.|+++.|++......+. . ...|-.......+.|+.++|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665442 1 222222233336778888888888887653 45543332 22345667788888888
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCH-----------hHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1132 AHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNI-----------VSWSAMVAAYGMNGLAHEALALVA 1200 (1991)
Q Consensus 1132 i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~-----------~s~n~LI~ay~~~G~~~eAl~lf~ 1200 (1991)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... ..|..++.........+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777766 44567778888889999999999988888875211 134444444444555666667777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC
Q 040435 1201 EMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT 1280 (1991)
Q Consensus 1201 eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd 1280 (1991)
.+.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......|+.+++.+.+++..+..+.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66432 345777888899999999999999999998865 34554222 2233335599999999999998877778
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1281 ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1281 ~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+..+.++...|...|++++|++.++++++.+|++.. +..|+.++.+.|+-++|...++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999999999999999999999999997644 8899999999999999988776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.4e-07 Score=104.66 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
+..+.-.+...|....+...|.+++..... .|....+.|...|-+.|+-.+|.+.+-+--.- ++-|..|..-|..-
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 344555566677777788888888776653 46777888888888888888888765543321 34466666666666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDML-ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l-~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
|....-.++++.+|++.. -+.|+..-|..||..+ -|.|++..|.++++....+++.|......|+..|...|-. .
T Consensus 636 yidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d 711 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-D 711 (840)
T ss_pred HHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-h
Confidence 777778888999998763 3889988888887654 5678999999999988877888888888888888777643 3
Q ss_pred HHHHHHHH
Q 040435 1300 GAGATSRI 1307 (1991)
Q Consensus 1300 A~~~~e~l 1307 (1991)
+.+..+++
T Consensus 712 ~key~~kl 719 (840)
T KOG2003|consen 712 AKEYADKL 719 (840)
T ss_pred HHHHHHHH
Confidence 45544444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.5e-08 Score=112.10 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=167.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
....+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|++.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345667788899999999999999998764 346788889999999999999999999998754 3355677778888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+...|++++|.++++.+.+..........+..+...+.+.|++++|.+.+++.....+.+...|..+...+...|+.+.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998763222224567788889999999999999999998775555677899999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
...++++++..|.++..+..++.++...|++++|..+...+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999898888888999999999999999988776654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=123.19 Aligned_cols=274 Identities=11% Similarity=-0.011 Sum_probs=200.0
Q ss_pred CHHHHHHHHHhcCC--Cchhhh--hHHHHhhhhcCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHhhccChHHHHHH
Q 040435 1059 LVELAWKLFNDVKK--PDVVLW--STMIAGFTLCGRPREAIAVFQEMNQAQ-E-KPNAITIINLLEACSVATELSSSKWA 1132 (1991)
Q Consensus 1059 ~l~~A~~lf~~m~~--~d~~sy--n~LI~~y~~~g~~eeAl~lf~~M~~~G-v-~Pd~~T~~~lL~a~a~~g~le~a~~i 1132 (1991)
...+|...|..+++ ++.. | .-+..+|...+++++|.++|+..++.. . .-+...|+++|--+-+. ++ ...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--v~--Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--VA--LSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--HH--HHH
Confidence 46788888888664 4444 4 345678888999999999999987742 1 12456777777554332 11 111
Q ss_pred HHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040435 1133 HGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP 1209 (1991)
Q Consensus 1133 ~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P 1209 (1991)
+..-.-.--+..+.+|.++.+.|+-.++.+.|++.|++... | ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 11111112244678899999999999999999999998875 3 567888888888888889999999988763 334
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHH
Q 040435 1210 NA-VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGAL 1287 (1991)
Q Consensus 1210 d~-~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~L 1287 (1991)
+. ..|-.+...|.+.+.++.|.-.|+.+++ +.|. .....++...+-+.|+.|+|+++++++..-.+.|+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 2455667778899999999999988764 8884 66777788888899999999999998865334455555555
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
...+...++.++|...+|++.++-|+++..|.+++.+|...|+.+.|..-.-.+-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 6666777888999999999999999999999999999999999888766555443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-05 Score=94.07 Aligned_cols=433 Identities=11% Similarity=0.040 Sum_probs=315.0
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 040435 882 YVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDS 961 (1991)
Q Consensus 882 ~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~ 961 (1991)
=...+++..|..+|.+.+.. -.-+...+.--+..=.+...+..|+.+++..+..-...| ..|-..+.|=-..|++..
T Consensus 83 Eesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHH
Confidence 34466788899999998863 344555566666666788899999999999987543333 345556666677899999
Q ss_pred HHHHhccCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh-
Q 040435 962 AFKVFSEMP--QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRR- 1038 (1991)
Q Consensus 962 A~~lf~~m~--~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~- 1038 (1991)
|+++|++-. +|+..+|++.|.-=.+....+.|..+|++..- +.|+..+|.-..+-=-+.|....+.+++..+++.
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999999854 69999999999999999999999999999875 5699999988888778889999999999988764
Q ss_pred cC-CCchhhhhhHHHHHHhcCCHHHHHHHHHhcC----C-CchhhhhHHHHhhhhcCCh---HHHHHH-----HHHHHHC
Q 040435 1039 AF-ESNELVLNSLIDGYSKCHLVELAWKLFNDVK----K-PDVVLWSTMIAGFTLCGRP---REAIAV-----FQEMNQA 1104 (1991)
Q Consensus 1039 g~-~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~----~-~d~~syn~LI~~y~~~g~~---eeAl~l-----f~~M~~~ 1104 (1991)
|- ..+...+.+....=.++..++.|.-+|+-.. + +....|.....-=-+-|+. ++++-- |+.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 21 1233445555555556788899988886443 2 2233444443333334443 344322 3333332
Q ss_pred CCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccc------hhHHH---HHHHHHHhcCCHHHHHHHHHhccC--
Q 040435 1105 QEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEE------VAVGT---AVVDMYAKCGAIEASRKAFDQISR-- 1173 (1991)
Q Consensus 1105 Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d------~~v~n---aLI~~y~k~G~~e~A~~lf~~m~~-- 1173 (1991)
+ .-|-.|+--.|.--...|+.+..+++++.++..-.+.. ..+|- -.+-.-....+++.+.++|+...+
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 2 33555666667777778999999999999886532221 11111 111111246788999999987765
Q ss_pred C-CHhHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CH
Q 040435 1174 K-NIVSWSAMVAAY----GMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-AL 1247 (1991)
Q Consensus 1174 ~-d~~s~n~LI~ay----~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~ 1247 (1991)
| ...|+..+--.| .++.+...|.+++...+ |.-|-..+|...|..-.+.+.+|+...+++..++ ..| +.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c 471 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENC 471 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhh
Confidence 2 334555544444 45678999999998876 6789999999999999999999999999999976 677 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDN--LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
.+|.-...+=...|+.+.|..+|+-+... ...-...|.+.|.--...|..+.|..+++++++..+... .++..+..-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHh
Confidence 78888888888899999999999987653 233467899999988899999999999999999998765 577776654
Q ss_pred H
Q 040435 1326 A 1326 (1991)
Q Consensus 1326 a 1326 (1991)
+
T Consensus 551 ~ 551 (677)
T KOG1915|consen 551 A 551 (677)
T ss_pred c
Confidence 4
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-06 Score=100.93 Aligned_cols=250 Identities=8% Similarity=0.027 Sum_probs=177.8
Q ss_pred hhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHhcCCH
Q 040435 1084 GFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCL--AEEVAVGTAVVDMYAKCGAI 1161 (1991)
Q Consensus 1084 ~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~--~~d~~v~naLI~~y~k~G~~ 1161 (1991)
+|-.....++++.-.......|+.-+...-+-.-.+.-...++++|..+|+.+.+... -.|..+|+.++-.-..+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3334445556666555555555433333222222233355566777777777666521 11444555444322222222
Q ss_pred HH-HHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1162 EA-SRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1162 e~-A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
.- |..++ .+.+=-..|..++.+-|+-.++.++|+..|++.++. .|. ...|+.+..-|....+...|.+.++..++
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 21 22222 222223445555666777788999999999999874 454 44577777889999999999999999976
Q ss_pred hcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1240 DHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1240 ~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
+.| |-..|-.|..+|.-.+...-|+-+|++..+--+.|..+|.+|+.+|.+.++.++|++.|++++..+-.+..++
T Consensus 393 ---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 ---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred ---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 777 6789999999999999999999999999874455889999999999999999999999999999988888999
Q ss_pred HHHHHHHHhCCCchhHHHHHH
Q 040435 1319 LLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+.|+++|-..++.++|+....
T Consensus 470 ~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999887554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.1e-09 Score=127.53 Aligned_cols=254 Identities=13% Similarity=0.127 Sum_probs=108.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHh-cCC----CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 040435 1049 SLIDGYSKCHLVELAWKLFND-VKK----PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVA 1123 (1991)
Q Consensus 1049 aLI~~y~k~G~l~~A~~lf~~-m~~----~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~ 1123 (1991)
.+..++.+.|++++|.+++++ +.. .|..-|..+.......++.++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 345667778888888888843 222 24445555555566677888888888888765422 33344444444 567
Q ss_pred cChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHHcCCHHHHHHH
Q 040435 1124 TELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KNIVSWSAMVAAYGMNGLAHEALAL 1198 (1991)
Q Consensus 1124 g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~s~n~LI~ay~~~G~~~eAl~l 1198 (1991)
++.+.|..+.....+.. ++...+..++..|.+.|+++++..+++.+.. .+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766555443 4555667788888899999999999888642 4667888888999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCC
Q 040435 1199 VAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNL 1277 (1991)
Q Consensus 1199 f~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~ 1277 (1991)
+++..+ ..|+ ......++..+...|+.+++.++++...+. ...+...+..+..+|...|+.++|...+++.....
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999987 4565 566778888888999999999998888664 24456678888999999999999999999987655
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1278 KATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
+.|+.+...+..++...|+.++|..+.+++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 668888999999999999999999998888753
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.7e-07 Score=113.14 Aligned_cols=290 Identities=12% Similarity=0.005 Sum_probs=169.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEI-TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWK 1065 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~-T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~ 1065 (1991)
.|+++.|.+.+.+..+. .|+.. .+-..-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+.+.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554432 23322 2222233344455666665555555443322222233334566667777777777
Q ss_pred HHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccc
Q 040435 1066 LFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLA 1142 (1991)
Q Consensus 1066 lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~ 1142 (1991)
.++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.+..........+
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a----------------------- 231 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA----------------------- 231 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-----------------------
Confidence 7777664 3 4445666777777777777777777777776533222111000000
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HH
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT---LS 1216 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~---~~ 1216 (1991)
+..+++.-......+...+.++...+ .+...+-.+...+...|+.++|++++++..+. .||.... ..
T Consensus 232 -----~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l 304 (409)
T TIGR00540 232 -----EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLC 304 (409)
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHH
Confidence 11111111112223444455555543 47788888888999999999999999998874 3554421 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--CccCCCCCHHHHHHHHHHHHHc
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQ--MPDNLKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~--m~~~~~pd~~~~~~Ll~a~~~~ 1294 (1991)
........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. +.+ ..|+...+..|...+...
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-EQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh-cCCCHHHHHHHHHHHHHc
Confidence 11222345677778888877766422223224556777888888888888888883 333 457777777888888888
Q ss_pred CChhHHHHHHHHHHh
Q 040435 1295 GNTELGAGATSRILE 1309 (1991)
Q Consensus 1295 g~~e~A~~~~e~lle 1309 (1991)
|+.++|.+++++.+.
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887655
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-06 Score=111.47 Aligned_cols=277 Identities=11% Similarity=0.018 Sum_probs=167.3
Q ss_pred cCCHHHHHHHHHhcCC--Cch-hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhccChHHHHH
Q 040435 1057 CHLVELAWKLFNDVKK--PDV-VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI--TIINLLEACSVATELSSSKW 1131 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~--~d~-~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~--T~~~lL~a~a~~g~le~a~~ 1131 (1991)
.|+++.|.+.+.+..+ |+. ..+-.....+.+.|+.++|.+.+.+..+.. |+.. .-..........|+.+.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555544432 211 111222233444455555555555544321 2221 11112333444555555555
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CHhHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1132 AHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRK---NIVSWS----AMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1132 i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~---d~~s~n----~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
.+..+.+.. +.+..+...+...|...|++++|.+.+..+.+. +...+. ....++...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555554 334445556666666667777777666666532 222221 111122223333334445555554
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH-HHHHHHH--HHcCCHHHHHHHHHHCccCCC
Q 040435 1205 GGL---QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHY-SCMVDML--ARAGELDIAIDLINQMPDNLK 1278 (1991)
Q Consensus 1205 ~Gi---~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y-~~Li~~l--~r~G~~eeA~~l~~~m~~~~~ 1278 (1991)
... +.+...+..+...+...|+.++|.+.+++..+ ..|+.... -.++..+ ...++.+.+.+.+++..+..+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 321 13677788888999999999999999999876 35553311 0122222 335788899999988877555
Q ss_pred CCH--HHHHHHHHHHHHcCChhHHHHHHH--HHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1279 ATA--SAWGALLSACRSYGNTELGAGATS--RILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1279 pd~--~~~~~Ll~a~~~~g~~e~A~~~~e--~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
.|+ ....+|...|.+.|++++|.+.++ .+++..|++.. +..++.++.+.|+.++|.++++.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 566 788899999999999999999999 57788897665 66999999999999999988763
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.81 E-value=9e-09 Score=89.66 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=48.0
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040435 1174 KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH 1223 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~ 1223 (1991)
||+++||+||.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1e-05 Score=97.55 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=147.8
Q ss_pred ccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHH
Q 040435 1123 ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALV 1199 (1991)
Q Consensus 1123 ~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf 1199 (1991)
.|+.-.+.+-+..+++....++. .|--+..+|....+-++..+.|++..+ .|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665433322 244455667777888888888887764 24445555555555667788888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC
Q 040435 1200 AEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLK 1278 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~ 1278 (1991)
++.+. +.|+ ...|.-+--+..+.+.+++++..|++.+++ +.-.++.|+.....|...++++.|.+.++...+ +.
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-LE 492 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-LE 492 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-hc
Confidence 88876 4453 445666666666888888899999888765 444578888888888889999999988887754 23
Q ss_pred CC---------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1279 AT---------ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1279 pd---------~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
|. +.+-.+++-.- =.+++.+|+.+..++++++|...-+|..|+.+-...|+.++|..+..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 32 23333333322 23788999999999999999999999999999999999988887765
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=88.66 Aligned_cols=50 Identities=24% Similarity=0.403 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040435 770 RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRC 819 (1991)
Q Consensus 770 ~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~ 819 (1991)
||+++||+||.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00026 Score=88.01 Aligned_cols=519 Identities=12% Similarity=0.083 Sum_probs=294.8
Q ss_pred CchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040435 756 FPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVA-GFEPNNSILVLVIQACRCLGAYYEGLQVHGYII 834 (1991)
Q Consensus 756 ~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~-gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~ 834 (1991)
.++.+......||. .|-.-+.-+..+|+.......|++.+.. .+.-....|...++-....+-.+.+..++.+.+
T Consensus 90 c~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 90 CFERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 35677777777764 5777777778889999888888887653 222233467777777777777777888887777
Q ss_pred HhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHcCChHHH---HHHHHHHHh
Q 040435 835 RSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDV----------ISWSVMIGGYVQSAEAFSG---LRLFRQMVS 900 (1991)
Q Consensus 835 k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~----------~syn~LI~a~~~~G~~~eA---l~lf~~M~~ 900 (1991)
+... ...+-.|..+++ +++++|.+.+..+...|. ..|..+-.-.+++-+.-.. -.+++.+..
T Consensus 166 k~~P----~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 166 KVAP----EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred hcCH----HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 6532 224445555566 677777777776644332 2333333333332221111 112222211
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCC--CHhHHH
Q 040435 901 GFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQK--NKVSWN 978 (1991)
Q Consensus 901 ~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--dv~s~n 978 (1991)
.-+|.. ...|++|.+-|.+.|.++.|..+|++..+. .+.-++
T Consensus 242 ---rftDq~---------------------------------g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt 285 (835)
T KOG2047|consen 242 ---RFTDQL---------------------------------GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT 285 (835)
T ss_pred ---cCcHHH---------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH
Confidence 122221 235566666666666666666666553321 111122
Q ss_pred HHHHHHHh----------------cCC------HHHHHHHHHHHhcCC-CC---------C-CHHHHHHHHHHHhccCCh
Q 040435 979 SALSGLVV----------------NEK------YSEALSLLYSMGKGV-NE---------V-DEITLVNILQICKCFVHP 1025 (1991)
Q Consensus 979 ~LI~a~~~----------------~g~------~~eAl~lf~~M~~~G-i~---------P-d~~T~~~lL~a~~~~g~~ 1025 (1991)
.+..+|++ .|+ .+-.+.-|+.+...+ +- | +..+|..-.. ...|+.
T Consensus 286 ~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~ 363 (835)
T KOG2047|consen 286 QIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNA 363 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCCh
Confidence 22222221 111 122233333332221 00 1 1111211111 123445
Q ss_pred hhHHHHHHHHHHhcC-----CCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCch-------hhhhHHHHhhhhcCChHH
Q 040435 1026 MECKSVHCVILRRAF-----ESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDV-------VLWSTMIAGFTLCGRPRE 1093 (1991)
Q Consensus 1026 ~~a~~i~~~~~~~g~-----~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~-------~syn~LI~~y~~~g~~ee 1093 (1991)
.+....+..+++.-- -.-...|..+.+.|-..|+++.|+.+|++..+-+- ..|-.-...=.++.+++.
T Consensus 364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA 443 (835)
T ss_pred HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 555566666665311 11234678888899999999999999998876222 234444455556777788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040435 1094 AIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR 1173 (1991)
Q Consensus 1094 Al~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~ 1173 (1991)
|+++.++.. ..|.... +..+ ..+..-++ .+-.+..+|+-.++.--.+|-++....+|+++.+
T Consensus 444 Al~lm~~A~---~vP~~~~----~~~y-d~~~pvQ~----------rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 444 ALKLMRRAT---HVPTNPE----LEYY-DNSEPVQA----------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHhhh---cCCCchh----hhhh-cCCCcHHH----------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 887665544 3343321 1111 22111111 1122456777778888889999999999999876
Q ss_pred CCHhHHHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH---hcCCHHHHHHHHHHhHHhcCCCCC
Q 040435 1174 KNIVSWSAMV---AAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACS---HGGLVEEGLSFFNSMVQDHGVEPA 1246 (1991)
Q Consensus 1174 ~d~~s~n~LI---~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~---~~G~~e~A~~i~~~M~~~~gi~P~ 1246 (1991)
--+.|=..++ .-+-.|..++++.+.|++=+..=-.|+.. .|+..|.-+. ..-.++.|+.+|++.++ |..|.
T Consensus 506 LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~ 583 (835)
T KOG2047|consen 506 LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPE 583 (835)
T ss_pred HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHH
Confidence 3222211111 22345677899999887654432234443 3444444332 33478999999999986 56554
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHH--
Q 040435 1247 L--EHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLL-- 1320 (1991)
Q Consensus 1247 ~--~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvl-- 1320 (1991)
- ..|-.-...=-+-|....|+.+++++....++. ...|+..|.-....=-+.....+|+++++.-|++-.--.-
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLR 663 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHH
Confidence 2 223333333345688999999999987655543 3578888876555444667788999999998876543333
Q ss_pred HHHHHHhCCCchhHHHHHHH
Q 040435 1321 ASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1321 L~~lya~~G~~~ea~~vr~~ 1340 (1991)
.+.+=.+.|..+.|..+...
T Consensus 664 FAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHh
Confidence 36777788988888887764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.2e-05 Score=95.82 Aligned_cols=287 Identities=11% Similarity=0.034 Sum_probs=196.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKL 1066 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~l 1066 (1991)
.|++.+|..+..+-.+.+-.|- ..|.....+....|+.+.+-+....+.+.--.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4778888888777665554432 345555666677788888888887777765566777777888888889999999888
Q ss_pred HHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcccc
Q 040435 1067 FNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAE 1143 (1991)
Q Consensus 1067 f~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~ 1143 (1991)
.+++.+ ........+..+|.+.|++.+++.++.+|.+.|+--|...- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 777654 66778888999999999999999999999998865554321 00
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|. ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 111223333333333333333445555542 3455566677777778888888888888777776665 222335
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+...++.+.-.+..+.-.+.++-.| ..+.+|..+|.|.+.+.+|.+.|+...+ ..|+...|.-+..++...|+.+.|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHH
Confidence 5667777766666666666555555 5677777777778888888888776654 467777787777788888888777
Q ss_pred HHHHHHHHh
Q 040435 1301 AGATSRILE 1309 (1991)
Q Consensus 1301 ~~~~e~lle 1309 (1991)
..+.++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 777777664
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0001 Score=91.29 Aligned_cols=481 Identities=14% Similarity=0.084 Sum_probs=290.0
Q ss_pred hcCCchHHHHHHhhcCC-CCh-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 040435 753 KWRFPDSAVAVFDDCIC-RDS-VSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVH 830 (1991)
Q Consensus 753 k~G~~~~A~~lfd~m~~-~d~-~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~ 830 (1991)
..|++++|...++.... |+. ..|-.+...-...|+.--|.+.| +..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHH
Confidence 46788899888877643 444 46777766666666655554444 3445666666666
Q ss_pred HHHH-------HhCC-CCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 040435 831 GYII-------RSGL-WAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGF 902 (1991)
Q Consensus 831 ~~~~-------k~G~-~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~ 902 (1991)
+... +.|- ..+.+-..+++.+.. ..+..|..+|-+-. ++ ...|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~-kkfk~ae~ifleqn--~t---e~aigmy~~lhkwde~i~lae~~---- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE-KKFKEAEMIFLEQN--AT---EEAIGMYQELHKWDEAIALAEAK---- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH-hhhhHHHHHHHhcc--cH---HHHHHHHHHHHhHHHHHHHHHhc----
Confidence 5432 2222 223333344444433 25667777775421 11 23456666667788887765432
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccC--CCCCHhHHHHH
Q 040435 903 KNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEM--PQKNKVSWNSA 980 (1991)
Q Consensus 903 gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m--~~~dv~s~n~L 980 (1991)
|...-...-.+.++++...|+-+.|-++-. +..-.-+-|..|.|.|....|.+.-..- .-.|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 221112233445666666666655544311 1111235678899999988887664321 22466666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhh-hhhHHHHHHhcCC
Q 040435 981 LSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELV-LNSLIDGYSKCHL 1059 (1991)
Q Consensus 981 I~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v-~naLI~~y~k~G~ 1059 (1991)
..++.+...+++|-.+|+++.. +...+..+.+-..+.+|.++-..+. +..++. -..--.-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHh
Confidence 7777777788888888887743 2233444433333444444433221 111111 0111223345567
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh
Q 040435 1060 VELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR 1139 (1991)
Q Consensus 1060 l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~ 1139 (1991)
++.|..-|-+.. ..-.-|.+-.....+.+|+.+++.++.... -.--|..+..-|+..|+++.|++++-..
T Consensus 722 ~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 777776664431 111234455667888999999988876532 2334667778889999999988887542
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1140 CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRK--NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSV 1217 (1991)
Q Consensus 1140 g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L 1217 (1991)
..++--|+||.+.|++++|.++-.+...| .++.|-+-..-+-.+|++.+|.++|-... .|+. .
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----a 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----A 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----H
Confidence 23456789999999999999998887665 45677777777888999999998886543 4554 3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG 1295 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g 1295 (1991)
|..|-+.|..+..+++.++- .|+ ..+.-.+..-|...|++.+|.+-|-+.. -|.+-.+.|+..+
T Consensus 857 iqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASE 922 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhh
Confidence 56778888888888776643 222 3455556677888899999988877664 3666777777777
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1296 NTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
-++.|-++++ .....+..-++...++-+-.|
T Consensus 923 lw~dayriak---tegg~n~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 923 LWEDAYRIAK---TEGGANAEKHVAFLWAKSIGG 953 (1636)
T ss_pred hHHHHHHHHh---ccccccHHHHHHHHHHHhhCc
Confidence 7777665543 334445444554444433333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.8e-05 Score=94.59 Aligned_cols=193 Identities=13% Similarity=0.063 Sum_probs=128.0
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1142 AEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL 1218 (1991)
Q Consensus 1142 ~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL 1218 (1991)
+....+|-++.-.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+..+-
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 3445556666666666677778888777665422 357777777788788888887777665432 111222233444
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CCCCHHHHHHHHHH
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN-------LKATASAWGALLSA 1290 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~pd~~~~~~Ll~a 1290 (1991)
--|.+.++.+.|.++|.+.. ++-| |+..++-+.-+.-..+.+.+|..+|+..... ..--..+|+.|+.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 45677778888888877653 4666 4555555555556667777777777665421 00123467777778
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
|++.+..++|+..+++++.+.|.++.+|..++-+|...|+.+.|..-.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 888888888888888888888888888888888888888888776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00013 Score=90.39 Aligned_cols=448 Identities=14% Similarity=0.144 Sum_probs=253.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHH--h
Q 040435 880 GGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNS--LIDMYA--K 955 (1991)
Q Consensus 880 ~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~na--LI~~y~--k 955 (1991)
.-+..+|++++|+....++... ..-|...+..-+-+..+.+.++.|..+.. ..+. ..+++. +=.+|| +
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 3445566777777777777652 32234445555556666666666663322 2221 011111 244555 7
Q ss_pred cCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCChhhHHHHHHH
Q 040435 956 CKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEV-DEITLVNILQICKCFVHPMECKSVHCV 1034 (1991)
Q Consensus 956 ~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~~lL~a~~~~g~~~~a~~i~~~ 1034 (1991)
.+..++|...++...+-|..+...=...+.+.|++++|+.+|+.+.+.+..- |...-..++.+-+.. +.- .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~~-~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QVQ-L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hHH-H
Confidence 7889999998886655555565556677888899999999999997655432 222222333222111 110 1
Q ss_pred HHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcC--------CCch-----h-----hhhHHHHhhhhcCChHH
Q 040435 1035 ILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVK--------KPDV-----V-----LWSTMIAGFTLCGRPRE 1093 (1991)
Q Consensus 1035 ~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~--------~~d~-----~-----syn~LI~~y~~~g~~ee 1093 (1991)
+......|+ ...|| ..-.+...|++..|+++++... +-|. . .---|.-.+...|+.++
T Consensus 164 ~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 222222221 12333 2345667899999999988762 1111 0 11124445667899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH---HHHHhhccChHHH--HHHHH-----------HHHHhccccchhHHHHHHHHHHh
Q 040435 1094 AIAVFQEMNQAQEKPNAITIINL---LEACSVATELSSS--KWAHG-----------IAIRRCLAEEVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1094 Al~lf~~M~~~Gv~Pd~~T~~~l---L~a~a~~g~le~a--~~i~~-----------~~~k~g~~~d~~v~naLI~~y~k 1157 (1991)
|..+|....+.. .+|....... |.+...-.++-.+ ....+ .+....-......-++++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999988764 3444222111 1222221111110 00000 0011111112333456677765
Q ss_pred cCCHHHHHHHHHhccCCC-HhHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 040435 1158 CGAIEASRKAFDQISRKN-IVSWSAMVAAYG--MNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHGGLVEEGLS 1232 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~~d-~~s~n~LI~ay~--~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~G~~e~A~~ 1232 (1991)
+..+.+.++-......- ...+.+++.... +......|.+++...-+. .|+. +.....+.-....|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 44566777666665422 334444443332 223577788888776653 3444 344444555678999999999
Q ss_pred HHH--------HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCC----CHHHHHHHHHHHHHcCCh
Q 040435 1233 FFN--------SMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN---LKA----TASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1233 i~~--------~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~p----d~~~~~~Ll~a~~~~g~~ 1297 (1991)
++. .+.+ +.-.+.+-..++.++.+.+.-+.|..++.+.... ..+ -..+|.-+..--.++|+.
T Consensus 398 il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 4432 3334556777889999988877777666655321 111 123444444445578999
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEc
Q 040435 1298 ELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVD 1358 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~ 1358 (1991)
++|...++++++.+|++....+-+..+|+...- +.|..+- +.+.|.++-..+.|+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~-eka~~l~-----k~L~p~~~l~~vdVd 529 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLDP-EKAESLS-----KKLPPLKGLKAVDVD 529 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH-HHHHHHh-----hcCCCcccchhcCch
Confidence 999999999999999999999988888887654 3333332 234555555555554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00019 Score=91.54 Aligned_cols=304 Identities=14% Similarity=0.064 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHH
Q 040435 990 YSEALSLLYSMGKGV-NEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFN 1068 (1991)
Q Consensus 990 ~~eAl~lf~~M~~~G-i~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~ 1068 (1991)
..++++.+++..+.+ -.|+...|.++- ++..++++.|.+...+.++.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 345666666664432 445544444443 33455677777777777777666667777777777777777777777766
Q ss_pred hcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcc--
Q 040435 1069 DVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQ--EKPNAITIINLLEACSVATELSSSKWAHGIAIRRCL-- 1141 (1991)
Q Consensus 1069 ~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~G--v~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~-- 1141 (1991)
...+ .|.+....-|..=..-++.++|+.....|..-- ..+=..+.. .|... + .+.|+
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~---~-----lk~~l~l 601 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLL---R-----LKAGLHL 601 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhh---h-----hhccccc
Confidence 5432 111111111122223456666666655554310 000000000 00000 0 01111
Q ss_pred -----ccchhHHHHHHHHHH---hcCCHHHHHHHHHhccCCC------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040435 1142 -----AEEVAVGTAVVDMYA---KCGAIEASRKAFDQISRKN------IVSWSAMVAAYGMNGLAHEALALVAEMKLGGL 1207 (1991)
Q Consensus 1142 -----~~d~~v~naLI~~y~---k~G~~e~A~~lf~~m~~~d------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi 1207 (1991)
.....++..+..... +.-..+..+..+.....|+ ...|......+.+.+..++|...+.+....-
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~- 680 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID- 680 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-
Confidence 011112221111111 1111111111122222232 2345555566667777777776666655421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHCccCCCCCHHHH
Q 040435 1208 QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAID--LINQMPDNLKATASAW 1284 (1991)
Q Consensus 1208 ~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~--l~~~m~~~~~pd~~~~ 1284 (1991)
.-....|......+...|..++|.+.|..... +.|+ +....++..+|.+.|+-.-|.. ++..+.+..+.+...|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 22223333333445566777777777766543 6664 5666777777777776555555 7777766555567777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
..|...+.+.|+.+.|...|.-++++++.+|
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 7777777777777777777777777776665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.3e-05 Score=92.77 Aligned_cols=267 Identities=11% Similarity=0.004 Sum_probs=191.4
Q ss_pred HHhcCCHHHHHHHHHhcCCC---chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHH
Q 040435 1054 YSKCHLVELAWKLFNDVKKP---DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSK 1130 (1991)
Q Consensus 1054 y~k~G~l~~A~~lf~~m~~~---d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~ 1130 (1991)
+-..+++.+..++++.+.+. ....+-.=|..+...|+..+-..+=.+|.+. ..-...+|-+|---|...|...+|+
T Consensus 254 ~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 33455556666666655542 2233444456667777777766666677664 2334567777777777889999999
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040435 1131 WAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGL 1207 (1991)
Q Consensus 1131 ~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi 1207 (1991)
+.+.......-. =...|-++...|+-.|.-|.|...+....+ +. ...+--+..-|.+.+..+.|.+.|.+... +
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i 409 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--I 409 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 999876544311 134566778889999999999988876554 11 11122233457888999999999998875 6
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH
Q 040435 1208 QP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH-GVEP----ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA 1281 (1991)
Q Consensus 1208 ~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~-gi~P----~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~ 1281 (1991)
.| |+...+-+--..-+.+.+.+|..+|+..+..- .+.+ ...+++.|..+|-|.+++++|+..+++.....+-+.
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 66 45555555444557889999999999876320 0111 345688899999999999999999999877556689
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
.++.++.-.+...||++.|...+.+++.+.|++...-.+|+.+
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999998777666643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.3e-06 Score=104.72 Aligned_cols=231 Identities=13% Similarity=0.104 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHh-----cc-ccc-hhHHHHHHHHHHhcCCHHHHHHHHHhccC----------
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAIRR-----CL-AEE-VAVGTAVVDMYAKCGAIEASRKAFDQISR---------- 1173 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~k~-----g~-~~d-~~v~naLI~~y~k~G~~e~A~~lf~~m~~---------- 1173 (1991)
.|+..+-..|...|+++.|.+++..+++. |. .+. ....+.+..+|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777788888888888888777654 21 111 12334566788999999999999998763
Q ss_pred C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--C
Q 040435 1174 K-NIVSWSAMVAAYGMNGLAHEALALVAEMKL-----GGLQ-PNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHG--V 1243 (1991)
Q Consensus 1174 ~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~-----~Gi~-Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g--i 1243 (1991)
| -..+++.|..+|.+.|++++|..++++..+ .|.. |... -++.+...|.+.+.+++|..+++...+.+- .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 235788888999999999998888877643 2222 2222 356677788999999999999988766544 2
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh--
Q 040435 1244 EPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN-------LKA-TASAWGALLSACRSYGNTELGAGATSRILE-- 1309 (1991)
Q Consensus 1244 ~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-- 1309 (1991)
.++ ..+|+.|..+|...|+++||+++++++..+ ..+ .....+.|..+|...++.+.|.+.|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 468999999999999999999999987542 112 245778889999999999999988888755
Q ss_pred --cCCCC---chHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1310 --LEAQN---SAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1310 --l~P~~---~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
..|+. ..+|-.|+.+|...|++++|.++....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 45555 456788899999999999999977643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.8e-06 Score=110.39 Aligned_cols=208 Identities=13% Similarity=-0.025 Sum_probs=152.6
Q ss_pred ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1125 ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1125 ~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~e 1201 (1991)
+.+.|...+..+++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...|...|++++|+..+++
T Consensus 319 ~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3566666666666654 33556667777788889999999999998764 4 456788888999999999999999999
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC
Q 040435 1202 MKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKA 1279 (1991)
Q Consensus 1202 M~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p 1279 (1991)
..+. .|+.. .+..++.++...|++++|.+.++++.+. ..|+ ...+..+..+|...|++++|...++++....+.
T Consensus 398 Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9874 45432 3334444566789999999999988653 2353 556777888999999999999999987654333
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+...++.|...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+..+++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 531 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNK 531 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHH
Confidence 4455666666667666 478887888777544444444558889999999887777744
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-05 Score=93.62 Aligned_cols=276 Identities=11% Similarity=0.028 Sum_probs=155.0
Q ss_pred cCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHH
Q 040435 1057 CHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAH 1133 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~ 1133 (1991)
.|++..|++...+-.+ ..+..|-.-..+--+.|+.+.|-.++.+..+.--.++.....+.-.-....++.+.|+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655433 2223333333444455666666666666554322333333334444455556666666555
Q ss_pred HHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-----------HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1134 GIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN-----------IVSWSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1134 ~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d-----------~~s~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
..+.+.+ +-.+.+.......|.+.|++.....+...|.+.. ..+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555544 2234455566666666666666666666665421 124555544443333333333344443
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH
Q 040435 1203 KLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS 1282 (1991)
Q Consensus 1203 ~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~ 1282 (1991)
... .+-+...-.+++.-+...|+.++|.++..+..+. +.+|+...+ -...+-++.+.=.+.+++-....+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 321 3334444455555556666666666666655542 444441111 1112334444444444433333455678
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
.+.+|..-|.+++.+.+|..+++.+++..|+ ...|..++.+|...|.-.+|..+|..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 8889999999999999999999988888885 45588889999999999888888764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.61 E-value=7e-06 Score=95.03 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=136.8
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDM 1154 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~ 1154 (1991)
...+..+...|...|++++|.+.+++..+. .|+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHH
Confidence 445666677777777777777777776543 122 22334445556
Q ss_pred HHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A 1230 (1991)
|...|++++|.+.|++..+ .+...+..+...|...|++++|++.|++.......| ....+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 6667777777777766543 344567777777888888888888888877643222 234555566677788888888
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1231 LSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.+.+....+ ..| +...+..+...+.+.|++++|.+.++++....+.+...+..+...+...|+.+.|....+.+.+
T Consensus 155 ~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888765 344 3567778888888888888888888887654344566777777778888888888888777766
Q ss_pred cCC
Q 040435 1310 LEA 1312 (1991)
Q Consensus 1310 l~P 1312 (1991)
..|
T Consensus 232 ~~~ 234 (234)
T TIGR02521 232 LFP 234 (234)
T ss_pred hCc
Confidence 543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00015 Score=86.00 Aligned_cols=303 Identities=10% Similarity=-0.036 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHHHhc--cCChhhHHHHHHHHH-HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHH--
Q 040435 1007 VDEITLVNILQICKC--FVHPMECKSVHCVIL-RRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTM-- 1081 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~--~g~~~~a~~i~~~~~-~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~L-- 1081 (1991)
|...+....+.+++. .++-..+.+.+..+. ..-++-++....++.+.|...|+.++|...|++....|..+...|
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 333344444444433 233333333333333 334667888899999999999999999999998776444443332
Q ss_pred -HHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC
Q 040435 1082 -IAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA 1160 (1991)
Q Consensus 1082 -I~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~ 1160 (1991)
...+.+.|+.++...+...+.... +-....+-.-+...-...+++.|..+-+..++..-. +...+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccc
Confidence 233467888888877777765431 111111111112222345566666665555554311 12222222244556799
Q ss_pred HHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHH
Q 040435 1161 IEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL-SACS-HGGLVEEGLSFFN 1235 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL-~ac~-~~G~~e~A~~i~~ 1235 (1991)
.++|.-.|..... -+..+|.-|+.+|...|++.||.-+-++.... +.-+..+...+. ..|. ....-++|.++++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999987654 37899999999999999999999887775542 334555555442 3333 2234588999998
Q ss_pred HhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1236 SMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1236 ~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
+-++ +.|+ ...-..+..++.+.|+.+++..++++... ..||....+.|....+..+.+.+|...|..++.++|++
T Consensus 429 k~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 429 KSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 7754 7887 45677788899999999999999999876 47899999999999999999999999999999999987
Q ss_pred ch
Q 040435 1315 SA 1316 (1991)
Q Consensus 1315 ~~ 1316 (1991)
..
T Consensus 505 ~~ 506 (564)
T KOG1174|consen 505 KR 506 (564)
T ss_pred hH
Confidence 54
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-05 Score=96.35 Aligned_cols=170 Identities=11% Similarity=0.073 Sum_probs=139.4
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A 1230 (1991)
.+.-+|+.-.|..-|+...+ | +...|--+...|++..+.++-...|++....+ +-|..+|..-.....-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34557899999999998764 3 33348888889999999999999999998754 22445555555555566789999
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1231 LSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
..=|++.+. +.| +...|..+.-++.|.+++++++..|++...+++.-+.+|+-....+..+++++.|++-|+++++
T Consensus 414 ~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999998865 788 4678888888999999999999999999998888899999999999999999999999999999
Q ss_pred cCCC------CchHHHHHHHHHHh
Q 040435 1310 LEAQ------NSAGYLLASSMYAA 1327 (1991)
Q Consensus 1310 l~P~------~~~~yvlL~~lya~ 1327 (1991)
++|. ++..++.-+.+...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred hccccccccccchhhhhhhHhhhc
Confidence 9999 77777766555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0028 Score=79.09 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=123.2
Q ss_pred HHHHHHHhcCCchHHHHHHh--hcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 040435 746 ALMDFYMKWRFPDSAVAVFD--DCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAY 823 (1991)
Q Consensus 746 ~Li~~y~k~G~~~~A~~lfd--~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~ 823 (1991)
+-|+.|.|.|.+-.|.+... +....|......+..++.+..-++.|=++|+++.. +...+..+.+...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 45778888888877766542 22234555555566666777777777777777643 22344444444445
Q ss_pred HHHHHHHHHHHHhCCCCchHHHH-HHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 040435 824 YEGLQVHGYIIRSGLWAVHSVQN-SVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSG 901 (1991)
Q Consensus 824 ~~a~~l~~~~~k~G~~~d~~v~n-aLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~ 901 (1991)
..|.++-... ++..++..- +.-.-+.. |.++.|..-|-+.. ..--.|.+..+...+.+|+.+++.++.+
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 5555443322 111111110 00011111 45555555443321 1112234455666777777777766543
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCC--CHhHHHH
Q 040435 902 FKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQK--NKVSWNS 979 (1991)
Q Consensus 902 ~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--dv~s~n~ 979 (1991)
+.-..-|..+..-|+..|+++.|+++|-.. ..++--|.||.+.|++++|.++-++...| .+++|-+
T Consensus 762 ---k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 762 ---KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred ---ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 222234566666777777777777766432 13455677777777777777777666554 3445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 040435 980 ALSGLVVNEKYSEALSLLYSM 1000 (1991)
Q Consensus 980 LI~a~~~~g~~~eAl~lf~~M 1000 (1991)
-..-+-+.|++.+|.++|-..
T Consensus 830 kaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEc
Confidence 555566667777777666443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.7e-05 Score=89.92 Aligned_cols=317 Identities=11% Similarity=0.069 Sum_probs=169.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhc-CCC--chhhhhhHHHHHHhcCCHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRA-FES--NELVLNSLIDGYSKCHLVELA 1063 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g-~~~--d~~v~naLI~~y~k~G~l~~A 1063 (1991)
+.+.++|.++|-+|.+.. .-+..+-.++=+-+.+.|..+.|..+|..+.++. +.- -....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 366777777777776521 1111222334445556677777777777666542 111 122334566667788888888
Q ss_pred HHHHHhcCCCc---hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhc
Q 040435 1064 WKLFNDVKKPD---VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRC 1140 (1991)
Q Consensus 1064 ~~lf~~m~~~d---~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g 1140 (1991)
+.+|..+.+.+ ..+--.|+..|-...++++|+++-+++.+.|-++..+-. -.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---Aq---------------------- 181 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---AQ---------------------- 181 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---HH----------------------
Confidence 88888776522 234555777788888888888887777765544332211 11
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1141 LAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSV 1217 (1991)
Q Consensus 1141 ~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L 1217 (1991)
.|.-|...+.-..+++.|..++.+..+.| +..=-.+...+...|+++.|++.++...+++..--..+...|
T Consensus 182 ------fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 182 ------FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ------HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 11222233333456666666666655422 222223345566677777777777777765433333455666
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
..+|.+.|+.+++...+.++.+ ..+....-..|.+.-....-.+.|...+.+-.. -+|+...+..|+..-..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-r~Pt~~gf~rl~~~~l~---- 327 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLR-RKPTMRGFHRLMDYHLA---- 327 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh-hCCcHHHHHHHHHhhhc----
Confidence 6677777777777777776654 233333333333333333333344433333222 13443333333322111
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEcCeEeEEEcCCCC
Q 040435 1298 ELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKA 1370 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~~~~~~F~~~d~~ 1370 (1991)
=++.|+|.+...+.+.|....++..|-.---.-+-.+|+|.-.-++
T Consensus 328 ---------------------------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 328 ---------------------------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred ---------------------------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCCC
Confidence 1223556666666666666666555543333334467777755443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.5e-06 Score=109.82 Aligned_cols=178 Identities=14% Similarity=0.034 Sum_probs=142.4
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
.+++++|...+++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3568899999998775 36778888888999999999999999999985 454 55677788889999999999999
Q ss_pred HHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1234 FNSMVQDHGVEPAL-EHYSCMVDMLARAGELDIAIDLINQMPDNLKA-TASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1234 ~~~M~~~~gi~P~~-~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
+++.++ +.|+. ..+..+..++...|++++|...++++....+| ++..+..+..++...|+.++|...++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999876 67753 33344455677799999999999988654334 45567777888889999999999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCchhHHH-HHHHHH
Q 040435 1312 AQNSAGYLLASSMYAAGGLWVESSG-TRLLAK 1342 (1991)
Q Consensus 1312 P~~~~~yvlL~~lya~~G~~~ea~~-vr~~m~ 1342 (1991)
|.+......|+..|...|. .+.. ++...+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 9888888888888888884 5555 444333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0034 Score=81.39 Aligned_cols=139 Identities=16% Similarity=0.155 Sum_probs=110.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMV 1254 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li 1254 (1991)
....|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.+++-.+++... ++..-+|.+ -+.||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma-Rkk~~E~~i--d~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA-RKKVREPYI--DSELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH-HHhhcCccc--hHHHH
Confidence 3457999999999999999999887542 36778999999999999999999999754 444555654 45789
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhH
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea 1334 (1991)
-+|++.+++.|-++++. -|+..-......-|...|.++.|.-+|.. .+.|..|+..+...|.+..|
T Consensus 1174 ~AyAkt~rl~elE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHHHhchHHHHHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999888874 46777788889999999999988887754 35567777777777777765
Q ss_pred HH
Q 040435 1335 SG 1336 (1991)
Q Consensus 1335 ~~ 1336 (1991)
..
T Consensus 1240 VD 1241 (1666)
T KOG0985|consen 1240 VD 1241 (1666)
T ss_pred HH
Confidence 53
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0085 Score=75.71 Aligned_cols=586 Identities=11% Similarity=0.046 Sum_probs=256.2
Q ss_pred chHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHh
Q 040435 708 SVYPLVVKACSNLSYIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLD 784 (1991)
Q Consensus 708 ~~~~~lL~ac~~~~~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~ 784 (1991)
..|..+++.+-......|......+++ ++.....+.....-.+...|+-++|......-.. ++.+.|..+--.+-.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 445556666554445556556666665 4444444443333345567888888777765443 355778877766667
Q ss_pred CCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHH
Q 040435 785 HGTLGEGLWWFYKARVAGFEPNN-SILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKL 863 (1991)
Q Consensus 785 ~g~~~~Al~lf~~M~~~gi~Pd~-~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~v 863 (1991)
..++++|+..|+..... .||. ..+.-+--.-+..|+++.....-....+.....-..-....++....|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877653 3443 33332222223444444443333333332211111111112222222455555544
Q ss_pred HHhcC-----CCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHH
Q 040435 864 FDEMC-----ERDVISWSVM------IGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQS-LVSVLKACTNLRDLTMGRMVH 931 (1991)
Q Consensus 864 f~~m~-----~~d~~syn~L------I~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T-~~~lL~a~~~~g~~~~a~~l~ 931 (1991)
.++.. .++...+.-. ......+|..++|++-+..-... ..|... -.+-.....+.+++++|..++
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 44331 1222222211 12233445555555544443221 112111 112222334455555555555
Q ss_pred HHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHH-HHhccCCC-------CCHhHHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 040435 932 GLVIYRGLGCDLFVG-NSLIDMYAKCKDTDSAF-KVFSEMPQ-------KNKVSWNSALSGLVVNEKY-SEALSLLYSMG 1001 (1991)
Q Consensus 932 ~~m~k~g~~pd~~v~-naLI~~y~k~G~~e~A~-~lf~~m~~-------~dv~s~n~LI~a~~~~g~~-~eAl~lf~~M~ 1001 (1991)
..++.+. ||..-| -.+..++++--+..++. .+|....+ |-....+. .....+ +..-.++..+.
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv-----l~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV-----LNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH-----hCcchhHHHHHHHHHHHh
Confidence 5555543 333322 23333333222222222 33333321 00001110 111122 22233444555
Q ss_pred cCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH----Hhc----------CCCchhhhh--hHHHHHHhcCCHHHHHH
Q 040435 1002 KGVNEVDEITLVNILQICKCFVHPMECKSVHCVIL----RRA----------FESNELVLN--SLIDGYSKCHLVELAWK 1065 (1991)
Q Consensus 1002 ~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~----~~g----------~~~d~~v~n--aLI~~y~k~G~l~~A~~ 1065 (1991)
+.|+.+--..+.++.. .....+-.+++.-.+. ..| -+|....|+ -|+..|-+.|+++.|..
T Consensus 316 ~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 5555443222222221 1111110011110000 000 023333333 35556667777777777
Q ss_pred HHHhcCC--Cchh-hhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccc
Q 040435 1066 LFNDVKK--PDVV-LWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLA 1142 (1991)
Q Consensus 1066 lf~~m~~--~d~~-syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~ 1142 (1991)
..+.... |+.+ .|-+=...+..+|..++|...+.+.++.. .||...=.--..-..+....++|..+.....+.|.
T Consensus 393 yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~- 470 (700)
T KOG1156|consen 393 YIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF- 470 (700)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc-
Confidence 7776654 3322 23333355666777777777777666532 22222111222223355666677776666666654
Q ss_pred cchhHHHHH------------HHHHHhcCCHHHHHHHHHhccC------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1143 EEVAVGTAV------------VDMYAKCGAIEASRKAFDQISR------KNIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1143 ~d~~v~naL------------I~~y~k~G~~e~A~~lf~~m~~------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
+ ..+.| ..+|.+.|++..|++-|..+.+ .|..-|.+ -|.+.|-.
T Consensus 471 -~--~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfht---yc~rk~tl------------ 532 (700)
T KOG1156|consen 471 -G--AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHT---YCMRKGTL------------ 532 (700)
T ss_pred -c--hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHH---HHHhcCcH------------
Confidence 1 11111 2345555666666655555442 01111100 01222222
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHhHHhcCCC-C---CHHHHH-HHHHHHHHcC-CHHHHHHHHH
Q 040435 1205 GGLQPNAVTTLSVLSACSHGG-------LVEEGLSFFNSMVQDHGVE-P---ALEHYS-CMVDMLARAG-ELDIAIDLIN 1271 (1991)
Q Consensus 1205 ~Gi~Pd~~T~~~LL~ac~~~G-------~~e~A~~i~~~M~~~~gi~-P---~~~~y~-~Li~~l~r~G-~~eeA~~l~~ 1271 (1991)
.+|.-++.-+-... -...|.+++-.|.+..... + +.+..+ -......++. .-..|.+.-+
T Consensus 533 -------rsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~ 605 (700)
T KOG1156|consen 533 -------RSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAK 605 (700)
T ss_pred -------HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332221111 1234555555554321000 1 111111 1112221111 1111221111
Q ss_pred HC----------ccC--CCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1272 QM----------PDN--LKATASAWGALLSACRSYG-NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1272 ~m----------~~~--~~pd~~~~~~Ll~a~~~~g-~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
.+ ... ..+|... +......-. =.++|...+..+....+++..+|++-..+|...|++.-+...-
T Consensus 606 ~~~~~~~~~~~s~~~~~~~~d~~~---~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~ 682 (700)
T KOG1156|consen 606 KKKDKKKKEAKSQSGKPVDIDEDP---FGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACL 682 (700)
T ss_pred HHHHHHHhhhccccCCCCCCCCcc---hhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 11 111 2234332 222333333 3577999888888999999999999999999999988877643
Q ss_pred H
Q 040435 1339 L 1339 (1991)
Q Consensus 1339 ~ 1339 (1991)
.
T Consensus 683 ~ 683 (700)
T KOG1156|consen 683 N 683 (700)
T ss_pred H
Confidence 3
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.011 Score=76.76 Aligned_cols=519 Identities=15% Similarity=0.109 Sum_probs=256.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhcCC--CChHHHHHH----HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040435 744 GNALMDFYMKWRFPDSAVAVFDDCIC--RDSVSWNIM----IQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQAC 817 (1991)
Q Consensus 744 ~n~Li~~y~k~G~~~~A~~lfd~m~~--~d~~s~n~L----I~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~ 817 (1991)
+....+.+.|.|-+..|++.+..+.. |.++.-+.+ +.+|...-.++++++.++.|...+++-|..+...+..-+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45667778899999999988877653 333332221 235555667899999999999988888877666665555
Q ss_pred HhcCChHHHHHHHHHHHH-----------hCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCC----------------
Q 040435 818 RCLGAYYEGLQVHGYIIR-----------SGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCE---------------- 869 (1991)
Q Consensus 818 ~~~g~~~~a~~l~~~~~k-----------~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~---------------- 869 (1991)
...--.+...++|+.... -++.-|..+.-..|.+-++ |.+.+..++-++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 544334444445444321 1345566677777888888 888888877654410
Q ss_pred ---------------CCHHHHH------HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHH-HHH------------HHH
Q 040435 870 ---------------RDVISWS------VMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQ-SLV------------SVL 915 (1991)
Q Consensus 870 ---------------~d~~syn------~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~-T~~------------~lL 915 (1991)
+|.+.|- -.|..|++.-++.++-.+.-.++. +.-+.. .-+ -+.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD---~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD---VDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc---CCCcHHHHHHHHHHHhccCChHHHH
Confidence 1222221 134445444333333222222221 111111 111 222
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH----------HHHhccCCCCCH-----------
Q 040435 916 KACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSA----------FKVFSEMPQKNK----------- 974 (1991)
Q Consensus 916 ~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A----------~~lf~~m~~~dv----------- 974 (1991)
.-+-+.+++..-...++..+..|.. |..++|+|...|...++-.+- ..+=.-..++|.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 3334445555555666777777754 888999999888765432221 111011111111
Q ss_pred ---h---------HHHHHHHHHHhcCCHH---HHH--------HHHHHHhcCCC--CCCHHHHHHHHHHHhccCChhhHH
Q 040435 975 ---V---------SWNSALSGLVVNEKYS---EAL--------SLLYSMGKGVN--EVDEITLVNILQICKCFVHPMECK 1029 (1991)
Q Consensus 975 ---~---------s~n~LI~a~~~~g~~~---eAl--------~lf~~M~~~Gi--~Pd~~T~~~lL~a~~~~g~~~~a~ 1029 (1991)
. .|-...+-+.+..+.+ +.+ .+.++..+.++ .-|....+....|+-..+-+.+-.
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 0 1111222222222221 111 23333333332 224445556667777777777777
Q ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCC
Q 040435 1030 SVHCVILRRA--FESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEK 1107 (1991)
Q Consensus 1030 ~i~~~~~~~g--~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~ 1107 (1991)
++++.++-.. +.-+...-|.||-.-.|.. .....+..+++..-|..- +......++-++||..+|++.-
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa~~---ia~iai~~~LyEEAF~ifkkf~----- 1075 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDAPD---IAEIAIENQLYEEAFAIFKKFD----- 1075 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCchh---HHHHHhhhhHHHHHHHHHHHhc-----
Confidence 7776665322 2233344555555444443 344555566655422211 2223445566777777776542
Q ss_pred CCHHHHHHHHHHHhhccChHHHHHHHHHHH---------Hh----c----------cccchhHHHHHHHHHHhcCCHHHH
Q 040435 1108 PNAITIINLLEACSVATELSSSKWAHGIAI---------RR----C----------LAEEVAVGTAVVDMYAKCGAIEAS 1164 (1991)
Q Consensus 1108 Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~---------k~----g----------~~~d~~v~naLI~~y~k~G~~e~A 1164 (1991)
.+......++. ..+.++.|.+.-.... +. | -..|+..|..+|+...+.|.+++-
T Consensus 1076 ~n~~A~~VLie---~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1076 MNVSAIQVLIE---NIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred ccHHHHHHHHH---HhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHH
Confidence 22223333332 1223333322211110 00 0 011333444444444445555544
Q ss_pred HHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 040435 1165 RKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHG 1242 (1991)
Q Consensus 1165 ~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g 1242 (1991)
.+.+...++ +....=+.||-+|++.++..+..+++ .-||..-.-.+..-|...|.++.|.-+|..
T Consensus 1153 v~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------ 1219 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN------ 1219 (1666)
T ss_pred HHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH------
Confidence 444433322 11222234455555555444433322 234444444555555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1243 VEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1243 i~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+..|.-|...+...|.+..|.+--+++. +..+|...-.||...+.+..|
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHhchhhhhHH
Confidence 3346677777777777777777666654 345666665555554444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.003 Score=80.99 Aligned_cols=394 Identities=12% Similarity=0.058 Sum_probs=241.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 040435 937 RGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLV 1013 (1991)
Q Consensus 937 ~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~ 1013 (1991)
..+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|....|+.+++.-....-.|+..+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888899999999999999999999988653 355689999899999999899999988765543335444332
Q ss_pred HHH-HHHh-ccCChhhHHHHHHHHHHh--cC--CCchhhhhhHHHHHHhcC-----------CHHHHHHHHHhcCC----
Q 040435 1014 NIL-QICK-CFVHPMECKSVHCVILRR--AF--ESNELVLNSLIDGYSKCH-----------LVELAWKLFNDVKK---- 1072 (1991)
Q Consensus 1014 ~lL-~a~~-~~g~~~~a~~i~~~~~~~--g~--~~d~~v~naLI~~y~k~G-----------~l~~A~~lf~~m~~---- 1072 (1991)
.+. ..|. +.+..+++...-..++.. +. ......|-.+--+|...- ...++...+++..+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222 2332 455566665555555542 11 112333444444443211 12344445555432
Q ss_pred -CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh-ccccchhHHHH
Q 040435 1073 -PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR-CLAEEVAVGTA 1150 (1991)
Q Consensus 1073 -~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~-g~~~d~~v~na 1150 (1991)
|++.-|-+| -|+..++.+.|++..++..+.+-.-+...+..+.-.++..+++..|..+.+..... |....... .
T Consensus 477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~ 552 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--G 552 (799)
T ss_pred CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--h
Confidence 444444333 46667778888888888877655556666666655666667777777776665432 21000000 0
Q ss_pred HHHHHHhcCCHHHHH--------------------------HHHHhccC-----CCH-hHHHHHHHHHHHcCCHHHHHHH
Q 040435 1151 VVDMYAKCGAIEASR--------------------------KAFDQISR-----KNI-VSWSAMVAAYGMNGLAHEALAL 1198 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~--------------------------~lf~~m~~-----~d~-~s~n~LI~ay~~~G~~~eAl~l 1198 (1991)
-++.-.+-++.++|. +.+..+.- .|. .++.-+ .+... -+.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccc
Confidence 011111122322222 22222210 111 122222 22222 111111100
Q ss_pred HHHHHHCCCC--CCHH------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 040435 1199 VAEMKLGGLQ--PNAV------TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDL 1269 (1991)
Q Consensus 1199 f~eM~~~Gi~--Pd~~------T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l 1269 (1991)
.. |...-+. |+.. .|......+...+..++|...+.+.. ++.| ....|......+...|.++||.+.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 00 2222222 2321 24445567788899999998877664 4666 456788788889999999999999
Q ss_pred HHHCccCCCCCHHHHHHHHHHHHHcCChhHHHH--HHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1270 INQMPDNLKATASAWGALLSACRSYGNTELGAG--ATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1270 ~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~--~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
|.....-.+.++.+..+|...+...|+...|+. +...+++++|.++.+|..|+.+..+.|+.++|......
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 998876445567788999999999999999988 99999999999999999999999999999999987654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.1e-05 Score=87.10 Aligned_cols=249 Identities=14% Similarity=0.165 Sum_probs=180.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhccChHHHHHHHHHHHHhc-cccc--hhHHHHHHHHHHhcCCHHH
Q 040435 1088 CGRPREAIAVFQEMNQAQEKPNA-ITIINLLEACSVATELSSSKWAHGIAIRRC-LAEE--VAVGTAVVDMYAKCGAIEA 1163 (1991)
Q Consensus 1088 ~g~~eeAl~lf~~M~~~Gv~Pd~-~T~~~lL~a~a~~g~le~a~~i~~~~~k~g-~~~d--~~v~naLI~~y~k~G~~e~ 1163 (1991)
+.+.++|.++|-+|.+. .|.. .+-.+|-+-+.+.|..+.|..+|..+.++. +..+ ....-.|..-|-+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 56788888888888763 3322 233456666788888899999988887652 2211 2233457778899999999
Q ss_pred HHHHHHhccCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 1164 SRKAFDQISRKN---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV----TTLSVLSACSHGGLVEEGLSFFNS 1236 (1991)
Q Consensus 1164 A~~lf~~m~~~d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~----T~~~LL~ac~~~G~~e~A~~i~~~ 1236 (1991)
|+.+|..+.+.+ ......|+..|-...++++|++.-+++.+.|-.+..+ -|.-|........+++.|+..+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988733 3466678899999999999999999998876555443 244555566677889999999998
Q ss_pred hHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1237 MVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1237 M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
..+ ..|+ +..--.+.+.....|+++.|.+.++...+. .|+ ..+...|..+|...|+.+.+...+.++.+..+.
T Consensus 206 Alq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 206 ALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 866 4554 455566788999999999999999998763 232 457888899999999999999999999998887
Q ss_pred CchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1314 NSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1314 ~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
.....++--.+-...|.-+-...+.+.++
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 65544333334444455333333444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.3e-05 Score=95.56 Aligned_cols=184 Identities=16% Similarity=0.087 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACS 1222 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~ 1222 (1991)
.+..+...|.+.|+.++|...|+...+ .+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 344445555566666666666655543 2345566666666666666666666666554 2343 334455555555
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
..|++++|.+.|+...+ ..|+-.........+...++.++|.+.+++......|+. |.. .......|+...+ .
T Consensus 144 ~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHH-HHHHHHccCCCHH-H
Confidence 56666666666665543 344322111112223344556666666644332222221 221 1111223333322 1
Q ss_pred HHHHHH-------hcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1303 ATSRIL-------ELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1303 ~~e~ll-------el~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+++.+. ++.|+.+.+|..|+.+|...|++++|....+
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222222 3344445556666666666666666665544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00031 Score=81.55 Aligned_cols=408 Identities=13% Similarity=0.078 Sum_probs=199.5
Q ss_pred CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHH
Q 040435 855 ADMECARKLFDEMCE---RDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQS-LVSVLKACTNLRDLTMGRMV 930 (1991)
Q Consensus 855 g~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T-~~~lL~a~~~~g~~~~a~~l 930 (1991)
|++++|..++..+.+ ++...|-.|..++.-.|.+.+|..+-... |+... -..+....-+.++-++-..+
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-------~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA-------PKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 566666666554422 34444555555555556666665543332 22222 22233333445555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHH-HHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 040435 931 HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--KNKVSWNS-ALSGLVVNEKYSEALSLLYSMGKGVNEV 1007 (1991)
Q Consensus 931 ~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~dv~s~n~-LI~a~~~~g~~~eAl~lf~~M~~~Gi~P 1007 (1991)
|+.+...- .-.-+|..+.--.-.+.+|++++.++.. |.-...|. |.-+|.+..-++-+.+++..-.+. -|
T Consensus 144 h~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~p 216 (557)
T KOG3785|consen 144 HSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FP 216 (557)
T ss_pred HHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CC
Confidence 55443221 1122333333333456778888877664 33344443 445666777777777766655432 24
Q ss_pred CHHHHHHHHHHHhccC--ChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhc-----CCHHHHHHHHHhcCCCchhhhhH
Q 040435 1008 DEITLVNILQICKCFV--HPMECKSVHCVILRRAFESNELVLNSLIDGYSKC-----HLVELAWKLFNDVKKPDVVLWST 1080 (1991)
Q Consensus 1008 d~~T~~~lL~a~~~~g--~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~-----G~l~~A~~lf~~m~~~d~~syn~ 1080 (1991)
|+ |+..=|.+|.... +-..+.+-...+.+.+-..-+ .+.-.++. ..-+.|.+++-.+.+.=..+--.
T Consensus 217 dS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 217 DS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred Cc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 32 3444444543321 111222222222222211101 11111221 22345555554433211112223
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hhccChHHHHHHHHHHHHhccccchhHHH-HHHHH
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEAC-----SVATELSSSKWAHGIAIRRCLAEEVAVGT-AVVDM 1154 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~-----a~~g~le~a~~i~~~~~k~g~~~d~~v~n-aLI~~ 1154 (1991)
|+--|.+.++..+|..+.+++.- ..|-....-.+..+- .+...+..|.+.+...-.++...|..... ++...
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 45558889999999988877632 334443333333321 12223445666666666666665554433 33334
Q ss_pred HHhcCCHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHH
Q 040435 1155 YAKCGAIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLS-ACSHGGLVEE 1229 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~-ac~~~G~~e~ 1229 (1991)
+.-..++++.+-.+..+.. .|...+| +..+++..|.+.+|.++|-+.....+ -|.++|.+++. .|.+.|..+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 4444556666666655543 3444444 56667777777777777765543322 24555655554 3456677777
Q ss_pred HHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1230 GLSFFNSMVQDHGVEPA-L-EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P~-~-~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
|+.++-.+- .|. . .....+..-+-+++.+--|-+.|+.+.. ..|++.-|.---+||.
T Consensus 447 AW~~~lk~~-----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~pEnWeGKRGACa 505 (557)
T KOG3785|consen 447 AWDMMLKTN-----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPTPENWEGKRGACA 505 (557)
T ss_pred HHHHHHhcC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCCccccCCccchHH
Confidence 776665441 121 1 1223334555666666666666665543 4566666655444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-05 Score=97.90 Aligned_cols=234 Identities=14% Similarity=0.110 Sum_probs=159.1
Q ss_pred hhhhhHHHHHHhcCCHHHHHHHHHhcCC----------Cchhh-hhHHHHhhhhcCChHHHHHHHHHHHHC---CCCCCH
Q 040435 1045 LVLNSLIDGYSKCHLVELAWKLFNDVKK----------PDVVL-WSTMIAGFTLCGRPREAIAVFQEMNQA---QEKPNA 1110 (1991)
Q Consensus 1045 ~v~naLI~~y~k~G~l~~A~~lf~~m~~----------~d~~s-yn~LI~~y~~~g~~eeAl~lf~~M~~~---Gv~Pd~ 1110 (1991)
.+...|..+|...|+++.|..+|+...+ +.+.+ -+.+...|...+++++|..+|.++..- ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455577778888888888777766432 22222 233555667777788888877776531 011111
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----------CCHh-HH
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----------KNIV-SW 1179 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~d~~-s~ 1179 (1991)
+.-..+++.|-..|.+.|++++|...+++..+ +.+. -+
T Consensus 280 -------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 -------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 11233455566677777887777776665432 2332 45
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc----C-CCCC-
Q 040435 1180 SAMVAAYGMNGLAHEALALVAEMKLG---GLQPNA----VTTLSVLSACSHGGLVEEGLSFFNSMVQDH----G-VEPA- 1246 (1991)
Q Consensus 1180 n~LI~ay~~~G~~~eAl~lf~eM~~~---Gi~Pd~----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~----g-i~P~- 1246 (1991)
+.++..+...+++++|..+++...+. -..++. .+++.+-..+.+.|.+++|.++|++++... | ..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777788889999999888876532 123333 368888999999999999999999887642 1 1222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccC------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDN------LKA-TASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~------~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
..+++.|...|.+.++.++|.++|.+.... ..| ...+|..|...|...|++|.|+++.++++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 457788889999999999999998875431 222 346899999999999999999999998874
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0022 Score=79.98 Aligned_cols=206 Identities=14% Similarity=0.084 Sum_probs=111.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHHhh---C
Q 040435 781 GHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNS--VLSMYVD---A 855 (1991)
Q Consensus 781 a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~na--Li~~yak---g 855 (1991)
-+..+|++++|+....++...+ +-|...+..=+-+....+.+++|..+.+ +.+. ..+.+. +-.+|+. +
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHcc
Confidence 3445566666666666666544 3344455555555666666666653322 2221 111122 3456664 7
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHH
Q 040435 856 DMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDG--QSLVSVLKACTNLRDLTMGRMVHGL 933 (1991)
Q Consensus 856 ~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~--~T~~~lL~a~~~~g~~~~a~~l~~~ 933 (1991)
..++|...++....-|..+--.=...+-+.|++++|+++|+.+.++ -.+|. ..-..++.+-.. .+.- .
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn--~~dd~d~~~r~nl~a~~a~-------l~~~-~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN--NSDDQDEERRANLLAVAAA-------LQVQ-L 163 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHh-------hhHH-H
Confidence 7888888888555445445444456677889999999999998764 22222 122222222111 1110 2
Q ss_pred HHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHhccCC--------CCCH-----h----H-HHHHHHHHHhcCCHHH
Q 040435 934 VIYRGLGCD---LFVGNSLIDMYAKCKDTDSAFKVFSEMP--------QKNK-----V----S-WNSALSGLVVNEKYSE 992 (1991)
Q Consensus 934 m~k~g~~pd---~~v~naLI~~y~k~G~~e~A~~lf~~m~--------~~dv-----~----s-~n~LI~a~~~~g~~~e 992 (1991)
+......|+ ...|| ....+...|++.+|+++++... +-|. . + ---|.-.+...|+..+
T Consensus 164 ~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 222222232 11233 2345667889999988887761 1111 1 1 1123345556799999
Q ss_pred HHHHHHHHhcCC
Q 040435 993 ALSLLYSMGKGV 1004 (1991)
Q Consensus 993 Al~lf~~M~~~G 1004 (1991)
|..++....+..
T Consensus 243 a~~iy~~~i~~~ 254 (652)
T KOG2376|consen 243 ASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHhc
Confidence 999988887653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0061 Score=77.59 Aligned_cols=152 Identities=12% Similarity=0.052 Sum_probs=83.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 920 NLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYS 999 (1991)
Q Consensus 920 ~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~ 999 (1991)
..|+.+.|..++..... |-++++..|-.|+.++|-++-++- .|....-.+.+.|-..|++.+|..+|.+
T Consensus 924 S~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred cccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666554432 445566666667777777776543 3555556677777777888888888776
Q ss_pred HhcCCCCCCHHHHHHHHHHHhccCCh---------------hhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Q 040435 1000 MGKGVNEVDEITLVNILQICKCFVHP---------------MECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAW 1064 (1991)
Q Consensus 1000 M~~~Gi~Pd~~T~~~lL~a~~~~g~~---------------~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~ 1064 (1991)
.+ +|.+.|+.|...+-- -.|...++ +.|. -..-.+..|.|.|.+.+|+
T Consensus 993 Aq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~-----~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 993 AQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGG-----YAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcch-----hhhHHHHHHHhhcchHHHH
Confidence 63 456666655432221 11222222 1121 1223455788899988888
Q ss_pred HHHHhcCC--------------CchhhhhHHHHhhhhcCChHHHHHHHH
Q 040435 1065 KLFNDVKK--------------PDVVLWSTMIAGFTLCGRPREAIAVFQ 1099 (1991)
Q Consensus 1065 ~lf~~m~~--------------~d~~syn~LI~~y~~~g~~eeAl~lf~ 1099 (1991)
++--+-.+ .|....+--..-+..+.++++|..++-
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 76433221 233333333344455556666665553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0092 Score=75.41 Aligned_cols=455 Identities=14% Similarity=0.085 Sum_probs=213.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHH
Q 040435 819 CLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCE---RDVISWSVMIGGYVQSAEAFSGLRLF 895 (1991)
Q Consensus 819 ~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~~~eAl~lf 895 (1991)
..+.+..+..+.+.+++.-......+.-.-+..++-|+-++|......-.+ ++.+.|.++.-.+-...++++|+..|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 445666666666666663222222233333444555888888877765543 46788988887777788999999999
Q ss_pred HHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCH
Q 040435 896 RQMVSGFKNEPDGQS-LVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNK 974 (1991)
Q Consensus 896 ~~M~~~~gv~Pd~~T-~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv 974 (1991)
+.... +.||.-. +--+--.-++.|++ .+-..+.+.|+. ......
T Consensus 99 ~nAl~---~~~dN~qilrDlslLQ~QmRd~---------------~~~~~tr~~LLq-----------------l~~~~r 143 (700)
T KOG1156|consen 99 RNALK---IEKDNLQILRDLSLLQIQMRDY---------------EGYLETRNQLLQ-----------------LRPSQR 143 (700)
T ss_pred HHHHh---cCCCcHHHHHHHHHHHHHHHhh---------------hhHHHHHHHHHH-----------------hhhhhH
Confidence 98876 4555322 11111000111111 111122222221 112345
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHHHHHHHHH------HHhccCChhhHHHHHHHHHHhcCCCchhhh
Q 040435 975 VSWNSALSGLVVNEKYSEALSLLYSMGKGV-NEVDEITLVNILQ------ICKCFVHPMECKSVHCVILRRAFESNELVL 1047 (1991)
Q Consensus 975 ~s~n~LI~a~~~~g~~~eAl~lf~~M~~~G-i~Pd~~T~~~lL~------a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~ 1047 (1991)
..|..++.++.-.|+...|..++++..+.. -.|+...+.-... .....|.++.+.+....... .+......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHh
Confidence 678888888888999999999988886654 2455544432222 12233444444433322111 111111122
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCC--CchhhhhHHHHhhh-hcCChHHHH-HHHHHHHHCC---CCCCHHHHHHHHHHH
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKK--PDVVLWSTMIAGFT-LCGRPREAI-AVFQEMNQAQ---EKPNAITIINLLEAC 1120 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~--~d~~syn~LI~~y~-~~g~~eeAl-~lf~~M~~~G---v~Pd~~T~~~lL~a~ 1120 (1991)
-.-.+.+.+.+++++|..++..+.. ||.+-|+.....+. +-.+.-+++ .+|....+.- -.|-.... ++++
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl-svl~-- 299 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL-SVLN-- 299 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH-HHhC--
Confidence 2334455566666666666666553 55555444433222 222222333 4444333210 11111111 1110
Q ss_pred hhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1121 SVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVA 1200 (1991)
Q Consensus 1121 a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~ 1200 (1991)
...-.+.....+...++.|+++ ++..+...|-.-...+ +.+ .++..|...-.........+
T Consensus 300 -~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le-----------~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 300 -GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLE-----------KLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred -cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHH-----------HHHHHHHhhcccccCCCccc
Confidence 0111111222233333333322 2233333222111110 111 11111111100000000000
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCC
Q 040435 1201 EMKLGGLQPNAV--TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNL 1277 (1991)
Q Consensus 1201 eM~~~Gi~Pd~~--T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~ 1277 (1991)
.= .--+|... |+..+...+-+.|+++.|..+++..+. -.|+ ++.|..=..++..+|.+++|..++++..+-.
T Consensus 361 ~~--~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 361 DG--KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cc--ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 00 00134443 333445566677777777777776643 4565 4566666677777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------chHHHHH--HHHHHhCCCchhHHH
Q 040435 1278 KATASAWGALLSACRSYGNTELGAGATSRILELEAQN-------SAGYLLA--SSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~-------~~~yvlL--~~lya~~G~~~ea~~ 1336 (1991)
.+|..+-+--..-..+..+.++|.+++.+.-.-+-+- --.++.+ +..|.++|+|.+|.+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 4444333233333334566677776665544433211 1123333 667888888866655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00012 Score=89.41 Aligned_cols=191 Identities=11% Similarity=0.019 Sum_probs=129.7
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCC
Q 040435 1115 NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1115 ~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~ 1191 (1991)
.+-..+...|+.+.|...+..+++.. +.+...++.+...|...|++++|...|+...+ | +...|..+...+...|+
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33334555566666666555555543 23466788888899999999999999998865 4 46788888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLIN 1271 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~ 1271 (1991)
+++|++.|++..+. .|+.......+..+...++.++|.+.+...... ..|+...+ .++.. ..|++.++ +.++
T Consensus 148 ~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~~--~lg~~~~~-~~~~ 219 (296)
T PRK11189 148 YELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVEF--YLGKISEE-TLME 219 (296)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHHH--HccCCCHH-HHHH
Confidence 99999999998874 465432222222344677899999999766442 34433222 23333 34555443 2333
Q ss_pred HCccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1272 QMPDN-------LKATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1272 ~m~~~-------~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
.+.+. .+....+|..|...+...|+.++|+..++++++++|.+
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33211 11234689999999999999999999999999999754
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0064 Score=79.57 Aligned_cols=631 Identities=11% Similarity=0.011 Sum_probs=302.0
Q ss_pred hhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCC----Cch
Q 040435 667 WSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYE----SFT 741 (1991)
Q Consensus 667 d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~----~d~ 741 (1991)
|..+-..|.++..-|....+...|...|+...+.. +.+......+.+.++... ...+..+ .+..+-. .-.
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I---~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEI---CLRAAQKAPAFACK 562 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHH---HHHHhhhchHHHHH
Confidence 33344445555555555555666777777765533 445555555555555544 3344444 1111110 011
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 040435 742 SIGNALMDFYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQAC- 817 (1991)
Q Consensus 742 ~~~n~Li~~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~- 817 (1991)
.-|-.+.-.|.+.++..+|..-|+...+ .|...|-.+..+|.+.|++..|+.+|.+... +.|+ .+|.....+-
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVM 639 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHH
Confidence 2222344456677777777777776543 4677888899999999999999999987655 3444 3444333332
Q ss_pred -HhcCChHHHHHHHHHHHHhCCCCchHHHHHHHH--------HHhhCCHHHHHHHHHhcC-----------CCCHHHHHH
Q 040435 818 -RCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLS--------MYVDADMECARKLFDEMC-----------ERDVISWSV 877 (1991)
Q Consensus 818 -~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~--------~yakg~~e~A~~vf~~m~-----------~~d~~syn~ 877 (1991)
+..|.+.++...++.++..-- .-....+.|.. .+.+|-...|...|+.-. ..+...|-.
T Consensus 640 ecd~GkYkeald~l~~ii~~~s-~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~ 718 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYAFS-LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIV 718 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 355777777777776654310 00111111111 122222222222222211 112222322
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-----HcCCCCCHHHHHHHHHH
Q 040435 878 MIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVI-----YRGLGCDLFVGNSLIDM 952 (1991)
Q Consensus 878 LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~-----k~g~~pd~~v~naLI~~ 952 (1991)
+ ..|..+|.+..- . .|+......+..-.-..+....-. ++.... ...+..+...|-.|..-
T Consensus 719 a----------sdac~~f~q~e~--~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 719 A----------SDACYIFSQEEP--S-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred H----------hHHHHHHHHhcc--c-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 2 233344444321 1 333333333333222222221000 000000 01111223333333322
Q ss_pred HHh----cC----ChHHHHHHhccCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 040435 953 YAK----CK----DTDSAFKVFSEMP---QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKC 1021 (1991)
Q Consensus 953 y~k----~G----~~e~A~~lf~~m~---~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~ 1021 (1991)
|.+ +| +...|...+.... ..+...||+|--. ...|++.-|...|-+-... .+-...+|..+-..|..
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEe
Confidence 222 22 2234555554432 2466777766444 4456666666665544332 11234455555555666
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcC-----C---CchhhhhHHHHhhhhcCChHH
Q 040435 1022 FVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVK-----K---PDVVLWSTMIAGFTLCGRPRE 1093 (1991)
Q Consensus 1022 ~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~-----~---~d~~syn~LI~~y~~~g~~ee 1093 (1991)
..+++.|.+.+..+.... +.+...|-.....--..|+.-++..+|..-. + ++..-|-....-...+|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 777777777776655433 2233333333333334566666666665421 1 444445444445556666555
Q ss_pred HHHHHHHHHH---------CCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh-ccccchhHHHH----HHHHHHhcC
Q 040435 1094 AIAVFQEMNQ---------AQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR-CLAEEVAVGTA----VVDMYAKCG 1159 (1991)
Q Consensus 1094 Al~lf~~M~~---------~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~-g~~~d~~v~na----LI~~y~k~G 1159 (1991)
-+..-++... .|..-+.+.|.......-+.+..+.+.......+.. ....+...||. +...++..|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 4433322211 123334455555554444555444444333332211 11223334442 334445567
Q ss_pred CHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 1160 AIEASRKAFDQISR-KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG-LQPNA-VTTLSVLSACSHGGLVEEGLSFFNS 1236 (1991)
Q Consensus 1160 ~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G-i~Pd~-~T~~~LL~ac~~~G~~e~A~~i~~~ 1236 (1991)
.++.|..-+..... -+..+-..=+.. ...|+++++++.|++...-- -.-|. +....++-+....+.-+.|...+-+
T Consensus 1022 efe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred chhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 77777666654432 121111111111 34578899999999987521 11222 2344444555667777778777666
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1237 MVQDHGVEPALEHYSCMVDMLAR---AGELDIAIDLINQMPDN--LKATASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1237 M~~~~gi~P~~~~y~~Li~~l~r---~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
.... -.|+....-+|--++.- +....-+.+-+...+.. +.-++.....+ .+...|+-....+..++..-..
T Consensus 1101 ~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~ 1176 (1238)
T KOG1127|consen 1101 VKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSN 1176 (1238)
T ss_pred HHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcC
Confidence 6543 23444443333332222 22222223333333221 11112222222 2567788888999999999999
Q ss_pred CCCchHHHHHHHHHHhC
Q 040435 1312 AQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1312 P~~~~~yvlL~~lya~~ 1328 (1991)
|.++..+.+|.+=|+..
T Consensus 1177 P~~~~~WslL~vrya~~ 1193 (1238)
T KOG1127|consen 1177 PGDPALWSLLSVRYAQR 1193 (1238)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99999999998766553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0028 Score=82.72 Aligned_cols=537 Identities=13% Similarity=0.041 Sum_probs=251.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHH--H
Q 040435 774 SWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLS--M 851 (1991)
Q Consensus 774 s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~--~ 851 (1991)
.|..|-..|...-+...|...|+...+-+ .-|......+...+++..+++.|..+.-..-+.. ..-...+|-+-. .
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcccc
Confidence 34444444444444444555555444321 1123334444455555555555554411111100 000111111111 1
Q ss_pred Hhh-CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCChH
Q 040435 852 YVD-ADMECARKLFDEMC---ERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKA--CTNLRDLT 925 (1991)
Q Consensus 852 yak-g~~e~A~~vf~~m~---~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a--~~~~g~~~ 925 (1991)
|-+ ++...|..-|+... ..|..+|..+..+|.+.|++..|++.|.+... +.|+. +|...-.+ -+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHHHHHHHHhhhHH
Confidence 223 56677777776553 34778888888899999999999998887754 55653 23332222 23456777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChHHHHHHhccCCCCCHhHHHHHH-HHHHhcC----CHHHH
Q 040435 926 MGRMVHGLVIYRGLGCDLFVGNSLIDMYAK-------CKDTDSAFKVFSEMPQKNKVSWNSAL-SGLVVNE----KYSEA 993 (1991)
Q Consensus 926 ~a~~l~~~m~k~g~~pd~~v~naLI~~y~k-------~G~~e~A~~lf~~m~~~dv~s~n~LI-~a~~~~g----~~~eA 993 (1991)
++...++.++..- ..-....+.|...+.+ .|-...|...|+.- ...+...+ ...+... -...|
T Consensus 648 eald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks----ie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 648 EALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS----IESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred HHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 7777666665431 1111122222222222 22222333333321 11111111 1100000 01233
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhH----HHHHHHHHHhcCCCchhhhhhHHHHHHh----cC----CHH
Q 040435 994 LSLLYSMGKGVNEVDEITLVNILQICKCFVHPMEC----KSVHCVILRRAFESNELVLNSLIDGYSK----CH----LVE 1061 (1991)
Q Consensus 994 l~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a----~~i~~~~~~~g~~~d~~v~naLI~~y~k----~G----~l~ 1061 (1991)
..+|....- . .|+......+..-.-..+....- ...-.......+..+...|..|...|.+ +| +..
T Consensus 723 c~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 723 CYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 444444431 1 33333333333222222222110 0111111112222334444444444433 22 233
Q ss_pred HHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 040435 1062 LAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIR 1138 (1991)
Q Consensus 1062 ~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k 1138 (1991)
.|...+....+ .+...||.|--. ..-|.+.-|...|-+-... .+....+|..+---|....+++.|.+.+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555555433 566777776544 4456666666666554432 122444555555556667777777777766554
Q ss_pred hccccchhHHHHHHHHHHhcCCHHHHHHHHHhc-----cC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Q 040435 1139 RCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQI-----SR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKL------ 1204 (1991)
Q Consensus 1139 ~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m-----~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~------ 1204 (1991)
... .+..-+--..-.-...|+.-++..+|.-- .+ ++..-|-+-..-..++|+.++-+..-+.+-.
T Consensus 879 LdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 321 11111111111122346666666666541 11 4455555545555666665554433332211
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHCccCC
Q 040435 1205 ---GGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSC----MVDMLARAGELDIAIDLINQMPDNL 1277 (1991)
Q Consensus 1205 ---~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~----Li~~l~r~G~~eeA~~l~~~m~~~~ 1277 (1991)
.|.+-+...|........|.+.+..|.+...+.+.-...+-+...|+. ...+++..|.++.|..-+.... .
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~--~ 1035 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW--M 1035 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc--h
Confidence 133445566777777777777777777666655432222334444543 3344555677776666555443 2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1278 KATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
..+..+-++-+.. .-.|+++.+...|++++.+.-++....++++.+....|
T Consensus 1036 evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1036 EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 2333344444433 33568888888888888876666665666665544443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0043 Score=78.89 Aligned_cols=427 Identities=14% Similarity=0.059 Sum_probs=236.7
Q ss_pred chHHHHHHHH--HHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040435 740 FTSIGNALMD--FYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQAC 817 (1991)
Q Consensus 740 d~~~~n~Li~--~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~ 817 (1991)
|..+-.++++ .|.--|+++.|.+-...+.+ -+.|..|.+.|.+..+.+-|.-.+..|...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~a---------------- 786 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNA---------------- 786 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhh----------------
Confidence 5566666664 46667888888777666553 456888888888888877777777666532
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 040435 818 RCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD--ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLF 895 (1991)
Q Consensus 818 ~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak--g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf 895 (1991)
..|+ .+.+..+.|-.... -+..++- |.+++|..++.+-.+-| .|=.-|-..|.+++|+++-
T Consensus 787 ------RgaR-AlR~a~q~~~e~ea-----kvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 787 ------RGAR-ALRRAQQNGEEDEA-----KVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred ------hhHH-HHHHHHhCCcchhh-----HHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHH
Confidence 1111 12222222211111 1112222 77888888887765443 4555667788888888876
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHh
Q 040435 896 RQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKV 975 (1991)
Q Consensus 896 ~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~ 975 (1991)
+.--+- .+ ..||-.-..-+...++.+.|.+.++.. |.. --.+.. |+. .+.....+..+++.++...
T Consensus 850 E~~DRi-HL---r~Tyy~yA~~Lear~Di~~AleyyEK~---~~h-afev~r-mL~-----e~p~~~e~Yv~~~~d~~L~ 915 (1416)
T KOG3617|consen 850 ETKDRI-HL---RNTYYNYAKYLEARRDIEAALEYYEKA---GVH-AFEVFR-MLK-----EYPKQIEQYVRRKRDESLY 915 (1416)
T ss_pred hhccce-eh---hhhHHHHHHHHHhhccHHHHHHHHHhc---CCh-HHHHHH-HHH-----hChHHHHHHHHhccchHHH
Confidence 653221 12 234444444455566677776666533 211 111111 111 2334445555666666555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHH
Q 040435 976 SWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYS 1055 (1991)
Q Consensus 976 s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~ 1055 (1991)
.|-. .-+-..|+.+.|+.+|...+. |-++.+..+-.|+.++|.+|-++ . -|....-.|.++|-
T Consensus 916 ~WWg--qYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 916 SWWG--QYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYE 978 (1416)
T ss_pred HHHH--HHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhh
Confidence 5432 222335888888888876643 55666666777777777776543 2 24455556777788
Q ss_pred hcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHH
Q 040435 1056 KCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGI 1135 (1991)
Q Consensus 1056 k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~ 1135 (1991)
..|++.+|..+|-+. .++..-|..|-.++.-++. .-+.-|.. | .++-.+-..+
T Consensus 979 n~g~v~~Av~FfTrA-----qafsnAIRlcKEnd~~d~L-~nlal~s~----~---------------~d~v~aArYy-- 1031 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRA-----QAFSNAIRLCKENDMKDRL-ANLALMSG----G---------------SDLVSAARYY-- 1031 (1416)
T ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHHHhcCHHHHH-HHHHhhcC----c---------------hhHHHHHHHH--
Confidence 888888888777654 3455555555444433322 22222211 1 1111111111
Q ss_pred HHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--------------CCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1136 AIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--------------KNIVSWSAMVAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1136 ~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--------------~d~~s~n~LI~ay~~~G~~~eAl~lf~e 1201 (1991)
.+.|.. ..--+..|-|.|.+.+|+++--+-.+ .|....+.-..-+..+.++++|..++-.
T Consensus 1032 -Ee~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1032 -EELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred -HHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112211 11234467777887777765322211 3556666666777888889999888876
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1202 MKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1202 M~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
.++ |...+..|...| +.-..++-+.|.-...-.|+ ......+.+.+.+.|.+..|-+-|.++-.
T Consensus 1106 ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1106 ARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 654 555666665543 33334444444332222333 24566677888889998888888877753
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0044 Score=72.39 Aligned_cols=195 Identities=9% Similarity=0.026 Sum_probs=121.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNG-------LAHEALALVAEMKLGGLQPNAVT-TLSVLSAC 1221 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G-------~~~eAl~lf~eM~~~Gi~Pd~~T-~~~LL~ac 1221 (1991)
.|+-.|.+.+++.+|..+.+++..-+..-|-.-...++.+| +..-|.+.|+-.-+.+..-|.+. --+..+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 35667889999999999998886544333322222233343 24556666665555555444432 22333334
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH-cCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS-YGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~-~g~~e~A 1300 (1991)
.-...+|+.+-++.++. .|=..-|...| .+..+++..|++.+|+++|-.+...--.|..+|.+++.-|.. .+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 44556788888888874 34334344444 467888889999999999988764212366788888776665 5567776
Q ss_pred HHHHHHHHhcCC-C-CchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCc
Q 040435 1301 AGATSRILELEA-Q-NSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAG 1351 (1991)
Q Consensus 1301 ~~~~e~llel~P-~-~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g 1351 (1991)
-.+ +++.+- . ..+..-++++.|..++.+=-|++...+++.. .|.|+
T Consensus 448 W~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pE 495 (557)
T KOG3785|consen 448 WDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPE 495 (557)
T ss_pred HHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcc
Confidence 554 444432 2 2233345588888988888888888877654 44554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.6e-05 Score=83.71 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDM 1256 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~ 1256 (1991)
+...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|...|..+.|.+.|+..+. +.|+ ....|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34456678888999999999998888753 23445777888888889999999999988765 6774 5677777888
Q ss_pred HHHcCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhH
Q 040435 1257 LARAGELDIAIDLINQMPDN--LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea 1334 (1991)
||..|++++|...|++.... ..--..+|..+..+..+.|+.+.|+..+++.++++|+.+.....++......|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88999999999999887652 2223568888888888899999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHcC
Q 040435 1335 SGTRLLAKERG 1345 (1991)
Q Consensus 1335 ~~vr~~m~~~g 1345 (1991)
.-..+....+|
T Consensus 193 r~~~~~~~~~~ 203 (250)
T COG3063 193 RLYLERYQQRG 203 (250)
T ss_pred HHHHHHHHhcc
Confidence 76655444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-05 Score=90.51 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=141.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCC--CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccC
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKK--PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATE 1125 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~--~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~ 1125 (1991)
+-+-..|.+.|.+.+|.+.|+.-.+ |-+.+|-.|-..|.+-.+++.|+.+|.+-.+ ..|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~------------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTY------------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhh------------
Confidence 3444555555555555555554332 4444455555555555555555555555443 23444444
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
..-....+-..++.++|.++|+...+ -++.+.-++..+|.-.++++-|+..|+++
T Consensus 293 ----------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 293 ----------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ----------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 11222333344566677777766654 24555555666677777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH
Q 040435 1203 KLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS 1282 (1991)
Q Consensus 1203 ~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~ 1282 (1991)
++.|+. +...|..+.-.|.-.+.+|-++..|.+.... |.. -.--..
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst--------------------------------at~-~~~aaD 396 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST--------------------------------ATQ-PGQAAD 396 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh--------------------------------ccC-cchhhh
Confidence 777753 4555666666666666666666666554321 110 011245
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
+|..|.......||+..|.+.++-++..+|++..+++.|+.+-+..|+.++|..+...-+.
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7888888888889999999999999999999999999999999999999998888776554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.6e-05 Score=85.43 Aligned_cols=192 Identities=13% Similarity=0.090 Sum_probs=160.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTL-SVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~-~LL~a 1220 (1991)
|-.--+-+..+|.+.|.+.+|.+.|+.-.+ |-+.||-.|-..|.+..+++.|+.+|.+-.+ ..|-.+||. .....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 334446678899999999999999987654 7788999999999999999999999999876 467777765 45567
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
+...+..++|.++++...+ ..| +++...|+...|.-.++.|-|+.+++++.+-..-++..+..+.-+|.-.++++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh
Confidence 7888999999999999876 455 688889999999999999999999999876434577899999999999999999
Q ss_pred HHHHHHHHHhcC--C-CCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1300 GAGATSRILELE--A-QNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1300 A~~~~e~llel~--P-~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+.-.+++++..- | ..+..+..|+.+....|++.-|.+..+.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 999999998753 3 3467789999999999999998876553
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00052 Score=88.65 Aligned_cols=282 Identities=15% Similarity=0.092 Sum_probs=164.5
Q ss_pred HHHhcCCHHHHHHHHHhcCC--Cchhhh-hHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----h--c
Q 040435 1053 GYSKCHLVELAWKLFNDVKK--PDVVLW-STMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACS----V--A 1123 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~--~d~~sy-n~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a----~--~ 1123 (1991)
.+...|+.++|.+.++.-.. .|..+| ......|.+.|+.++|..+|+.+.+. .|+...|-..+..|. . .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccc
Confidence 34566777777777765443 444443 33445566677777777777777765 366666655555544 1 1
Q ss_pred cChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCH-HHHHHHHHhccCCCH-hHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1124 TELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAI-EASRKAFDQISRKNI-VSWSAMVAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1124 g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~-e~A~~lf~~m~~~d~-~s~n~LI~ay~~~G~~~eAl~lf~e 1201 (1991)
.+.+.-.+++..+...-...+.. .-+.-.+..-..+ ..+...+..+..+.+ ..++.|-..|....+..-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 13344455555443322111110 0010001110111 112222233333444 3455555555544444444455555
Q ss_pred HHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 040435 1202 MKLG----G----------LQPNAV--TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELD 1264 (1991)
Q Consensus 1202 M~~~----G----------i~Pd~~--T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~e 1264 (1991)
+... | -.|... ++..+...|.+.|++++|+++++..++ ..|+ ++.|..-...|-+.|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHH
Confidence 4322 1 123332 445556667789999999999998876 5776 788888899999999999
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc-------hHH--HHHHHHHHhCCCchhHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS-------AGY--LLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~-------~~y--vlL~~lya~~G~~~ea~ 1335 (1991)
+|.+.++....-..-|..+-+-....+.+.|+.+.|+..+......+-+.. ..| +-.+.+|...|++..|.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999988764445666666777777888999999988877655442111 123 33388999999999988
Q ss_pred HHHHHH
Q 040435 1336 GTRLLA 1341 (1991)
Q Consensus 1336 ~vr~~m 1341 (1991)
+-...+
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 755443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.014 Score=72.25 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcccc-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1092 REAIAVFQEMNQA-QEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAE-EVAVGTAVVDMYAKCGAIEASRKAFD 1169 (1991)
Q Consensus 1092 eeAl~lf~~M~~~-Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~-d~~v~naLI~~y~k~G~~e~A~~lf~ 1169 (1991)
+.....+.+.... .+.|+ .+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 3344444444432 22333 345556666666666666777777766665555 66666677666664 55566666666
Q ss_pred hccC--CCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1170 QISR--KNI-VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1170 ~m~~--~d~-~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
.-.+ +|. .--...+.-+...++-..|..+|++....++.||. ..|...|.--+.-|++..+.++-+++...
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4332 222 22334444455555555566666666555444433 24555555555555555555555544443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0001 Score=88.95 Aligned_cols=158 Identities=10% Similarity=0.090 Sum_probs=114.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS----HGGLV 1227 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~----~~G~~ 1227 (1991)
..+|...|++++|+++++.. .+.......+..|.+.+|.+.|.+.++.|.+. ..|.. ...+..++. ....+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhH
Confidence 34566788888888888766 45666677788899999999999999999863 34544 333444432 23368
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT-ELGAGATSR 1306 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~-e~A~~~~e~ 1306 (1991)
.+|..+|+++.+. ..+++...+.+.-++...|++++|.+++++.....+-++.++..++..+...|+. +.+.+...+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 8899999988654 4567778888888888899999999998887765555777888888877888876 667788888
Q ss_pred HHhcCCCCch
Q 040435 1307 ILELEAQNSA 1316 (1991)
Q Consensus 1307 llel~P~~~~ 1316 (1991)
+....|+++.
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 8888888654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.002 Score=79.88 Aligned_cols=211 Identities=10% Similarity=0.049 Sum_probs=117.3
Q ss_pred HHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCH----------hHHHHHHHH
Q 040435 1116 LLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNI----------VSWSAMVAA 1185 (1991)
Q Consensus 1116 lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~----------~s~n~LI~a 1185 (1991)
+.++.-+..+++.+.+-+...+... .+..-++..-.+|...|.+......-+...+..- .+...+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 3344444444555555555444443 3444445555555555555544443333222110 112223345
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHHHcCCHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALE-HYSCMVDMLARAGELD 1264 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~-~y~~Li~~l~r~G~~e 1264 (1991)
|.+.++++.|+..|.+.......||..+ +....+++....+...- +.|... --..=...+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHH
Confidence 5566677777777777665544443321 22233444444443321 444321 1111145556677777
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+|++.+.++..+.+.|...|.....+|.+.|++..|..-++..++++|+....|+.=+.++....+|+.|.+....
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776655666777777777777777777777777777777777777777777777777777777665553
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.03 Score=79.61 Aligned_cols=192 Identities=12% Similarity=0.061 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHH
Q 040435 1149 TAVVDMYAKCGAIEASRKAFDQISR-------K----NIVSWSAMVAAYGMNGLAHEALALVAEMKLG--GLQPN--AVT 1213 (1991)
Q Consensus 1149 naLI~~y~k~G~~e~A~~lf~~m~~-------~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~--Gi~Pd--~~T 1213 (1991)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+.+.... ...+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444555666777776666654432 1 1122334445566668888888877776542 11121 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHCccCCCCCH----HHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHY-----SCMVDMLARAGELDIAIDLINQMPDNLKATA----SAW 1284 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y-----~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~----~~~ 1284 (1991)
+..+.......|+.++|.+.+..+............+ ......+...|+.+.|.+++........... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 3334455667788888888877764321111111111 1122344557888888888877653211111 124
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCC------CCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEA------QNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P------~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
..+..++...|+.++|...++++++... .....+..++.+|...|+.++|......
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566677778888888888888877521 1234567778888899998888765443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00074 Score=75.58 Aligned_cols=193 Identities=10% Similarity=0.061 Sum_probs=138.9
Q ss_pred HhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHH
Q 040435 1120 CSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEAL 1196 (1991)
Q Consensus 1120 ~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl 1196 (1991)
|...|+...|+.-++.+++.. +.+..++..+...|-+.|..+.|.+-|+.... .+-...|....-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 344444444444444444432 22344566677778888888888888876653 35566777777788888999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1197 ALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
..|++....-.-| -..||..+.-+-.+.|+.+.|.++|++.++ ..|+ ....-.|.....+.|++-.|..+++...
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9888887642211 234677776666788999999999988876 5664 5677788888889999999999998887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1275 DNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1275 ~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.+..++..+.--.|..-...||...+.+.-.++-.+-|....
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 776678777777777888889988888877777778887654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.8e-05 Score=89.53 Aligned_cols=150 Identities=13% Similarity=0.017 Sum_probs=114.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH---HHHHHHHHHHHcC
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALE---HYSCMVDMLARAG 1261 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~---~y~~Li~~l~r~G 1261 (1991)
.|...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+.++.-..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCch
Confidence 455579999999988642 3456666778889999999999999999954 555532 2233344333334
Q ss_pred CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh-HHHHHHH
Q 040435 1262 ELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE-SSGTRLL 1340 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e-a~~vr~~ 1340 (1991)
.+.+|..+|+++.++..+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++.+....|+..+ +.+....
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 799999999999888888999999999999999999999999999999999999999999999999999844 5556665
Q ss_pred HHH
Q 040435 1341 AKE 1343 (1991)
Q Consensus 1341 m~~ 1343 (1991)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0015 Score=77.84 Aligned_cols=197 Identities=13% Similarity=0.005 Sum_probs=139.0
Q ss_pred HhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHH---HHHHHH--------------------------
Q 040435 1138 RRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAM---VAAYGM-------------------------- 1188 (1991)
Q Consensus 1138 k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~L---I~ay~~-------------------------- 1188 (1991)
..-++.++....++.+.|...|+.++|...|+....-|..+..+| ...+.+
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 445777888889999999999999999999987664332222211 111122
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 040435 1189 --------NGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLA 1258 (1991)
Q Consensus 1189 --------~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~ 1258 (1991)
.++++.|+.+-++-++ +.|+.+ .+..=..++...|++++|.-.|+.... +.| +...|.-|+..|.
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHH
Confidence 3455566666555554 223222 333333566788999999999998754 777 6899999999999
Q ss_pred HcCCHHHHHHHHHHCccCCCCCHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1259 RAGELDIAIDLINQMPDNLKATASAWGALL-SACR-SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll-~a~~-~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
..|++.||.-+-+....-++.++.+..-+. ..|. ...--|.|.+.+++.+.++|.-..+.+.++.++...|+.+|+..
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 999999998776654433344555554442 2333 23346899999999999999999999999999999999999888
Q ss_pred HHH
Q 040435 1337 TRL 1339 (1991)
Q Consensus 1337 vr~ 1339 (1991)
+.+
T Consensus 460 LLe 462 (564)
T KOG1174|consen 460 LLE 462 (564)
T ss_pred HHH
Confidence 644
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0012 Score=85.42 Aligned_cols=258 Identities=10% Similarity=0.037 Sum_probs=182.2
Q ss_pred HhhhhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhc---
Q 040435 1083 AGFTLCGRPREAIAVFQEMNQAQEKPNAITII-NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKC--- 1158 (1991)
Q Consensus 1083 ~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~-~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~--- 1158 (1991)
..+...|++++|++.+.+-.. ..+|..++. .....+.++|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 345788999999999977443 456666554 455667899999999999999999984 4455556666655322
Q ss_pred --CCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1159 --GAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLA-HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1159 --G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~-~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
...+...++|+++.. |.......+.-.+.....+ ..+..++..+...|+++ +|..|-.-|......+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 256777888888765 3322222232222222223 34556777788888754 455555556655555555555
Q ss_pred HHHhHHhc---C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1234 FNSMVQDH---G----------VEPAL--EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1234 ~~~M~~~~---g----------i~P~~--~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
+..+.... + -.|+. .++..+...|.+.|++++|++++++..+..+-.+..|..-...+...|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 55544321 1 12333 345667788999999999999999988754445778888899999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
.|.+.++.+.++++.|--...-.+..+-.+|+.++|.++-..-.+.+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999887777778889999999999998887666555
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00014 Score=78.80 Aligned_cols=124 Identities=10% Similarity=0.052 Sum_probs=103.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1197 ALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
.+|++..+ +.|+. +..+..++...|++++|...|+..+. +.| +...|..+..++.+.|++++|...++++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45556554 34554 44566778899999999999998875 667 578889999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1276 NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
..+.+...|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 6666889999999999999999999999999999999999998888776543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00013 Score=90.63 Aligned_cols=190 Identities=14% Similarity=0.073 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----C---CHHHHH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-----P---NAVTTL 1215 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-----P---d~~T~~ 1215 (1991)
.|--|.-.-+..++=..|+..+.+..+ .+....-+|...|...|.-.+|+.+++.-+....+ + +..+-.
T Consensus 321 AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~ 400 (579)
T KOG1125|consen 321 AWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFEN 400 (579)
T ss_pred HHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccC
Confidence 333344444444555556666665554 36677778888899999999999998887653211 0 000000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC
Q 040435 1216 SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG 1295 (1991)
Q Consensus 1216 ~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g 1295 (1991)
. ....+...+....++|-.+....+.++|+..+.+|.-+|--.|.+++|.+.|+.+...-+-|..+|+-|....+...
T Consensus 401 ~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 401 T--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN 478 (579)
T ss_pred C--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc
Confidence 0 11122333556677777777777767788899999999999999999999999998754568899999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1296 NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
+.++|+.+|.+++++.|.-.-+...|+..|.-.|.++||.+..
T Consensus 479 ~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 479 RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999888999999999999999998754
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00082 Score=79.11 Aligned_cols=178 Identities=12% Similarity=-0.007 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-H---hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-I---VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV----TT 1214 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~---~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~----T~ 1214 (1991)
...+-.+...|.+.|++++|...|+++.+ |+ . ..|..+..+|.+.|++++|+..++++.+.. |+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHH
Confidence 33444555566666666666666665543 22 1 345556666666666666666666666532 2211 23
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHH
Q 040435 1215 LSVLSACSHG--------GLVEEGLSFFNSMVQDHGVEPALE-HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWG 1285 (1991)
Q Consensus 1215 ~~LL~ac~~~--------G~~e~A~~i~~~M~~~~gi~P~~~-~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~ 1285 (1991)
..+..++... |+.++|.+.++.+.+ ..|+.. .+..+.. .+...... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~----~~~~~~~~-------------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKR----MDYLRNRL-------------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHH----HHHHHHHH-------------HHHHH
Confidence 3333333332 456666666666654 233321 1111111 00000000 01112
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCC---chHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQN---SAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~---~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
.+...+...|+.+.|...++++++..|++ +.++..++.+|...|++++|....+.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566788899999999999999987765 468899999999999999999877766543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0083 Score=75.26 Aligned_cols=252 Identities=10% Similarity=-0.021 Sum_probs=144.8
Q ss_pred hhhhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhh----ccChHHHHHHHHHHHHhcccc-chhHHHHHHHHHHh
Q 040435 1084 GFTLCGRPREAIAVFQEMNQAQEKPNAI-TIINLLEACSV----ATELSSSKWAHGIAIRRCLAE-EVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1084 ~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-T~~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~-d~~v~naLI~~y~k 1157 (1991)
.+...|+.++|.+++++..+. .|+.. .+.. ..++.. .+....+.+.... .....+ .......+...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 445677788888888777664 34333 2221 111112 2333333333332 111122 23344455567788
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPNA--VTTLSVLSACSHGGLVEEGL 1231 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd~--~T~~~LL~ac~~~G~~e~A~ 1231 (1991)
.|++++|...+++..+ .+...+..+...|...|++++|+.++++.....- .|+. ..|..+...+...|+.++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999988887764 3456777888888889999999999888776421 1232 23445666778889999999
Q ss_pred HHHHHhHHhcCCCCCHH-H--HHHHHHHHHHcCCHHHHHHH---HHHCccCC--CCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1232 SFFNSMVQDHGVEPALE-H--YSCMVDMLARAGELDIAIDL---INQMPDNL--KATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1232 ~i~~~M~~~~gi~P~~~-~--y~~Li~~l~r~G~~eeA~~l---~~~m~~~~--~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
++++.+.......+... . ...+...+...|..+.+.++ ........ ............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99988743211111111 1 11333334444533333332 11111100 11223333566667788889999888
Q ss_pred HHHHHhcCCC---------CchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1304 TSRILELEAQ---------NSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1304 ~e~llel~P~---------~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
++.+....-. .....++.+.++...|++++|......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~ 332 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP 332 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887653211 244556778899999999998876543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0012 Score=75.57 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=109.8
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGL 1231 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~ 1231 (1991)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777787777655543332221 01222556677777777776643 456667777778888888888888
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1232 SFFNSMVQDHGVEP-ALEHYSCMVDML-ARAGE--LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1232 ~i~~~M~~~~gi~P-~~~~y~~Li~~l-~r~G~--~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
..|+...+ +.| +...+..+..++ .+.|+ .++|.+++++..+..+.+..++..|..++...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887765 566 467777777754 66676 488888888887755567788888888888888888888888888
Q ss_pred HhcCCCCchHHH
Q 040435 1308 LELEAQNSAGYL 1319 (1991)
Q Consensus 1308 lel~P~~~~~yv 1319 (1991)
++++|.+..-+-
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 888877665443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0032 Score=77.16 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=125.4
Q ss_pred HHhcC-CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1155 YAKCG-AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLA--HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1155 y~k~G-~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~--~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
+.+.| .+++++..++++.+ ++..+|+.....+.+.|+. ++++.++++|.+.. +-|..+|.....++.+.|+++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 33445 56888888877664 4556777665556666653 67888888888754 235677888888888889999
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc---CC----HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC----C
Q 040435 1229 EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARA---GE----LDIAIDLINQMPDNLKATASAWGALLSACRSYG----N 1296 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~---G~----~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g----~ 1296 (1991)
++++.++.+++ ..| +...|+....++.+. |. .+++.++..++....+-|..+|+-+.+.+..++ +
T Consensus 160 eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 160 DELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 99999999986 344 455666665555554 32 356778877776655678899999999998843 4
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1297 TELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1297 ~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
..+|...+.++++.+|.++.+.-.|+.+|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 56788889999999999999999999999874
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00089 Score=76.54 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=117.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G 1261 (1991)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++ ..| +...|..|...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4568899998886544433221 11 012236677888888887766 456 6889999999999999
Q ss_pred CHHHHHHHHHHCccCCCCCHHHHHHHHHHH-HHcCC--hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1262 ELDIAIDLINQMPDNLKATASAWGALLSAC-RSYGN--TELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~-~~~g~--~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
++++|...+++.....+.+..+|..+..++ ...|+ .++|..+++++++++|+++.++.+|+..+...|++++|....
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999875566888999988874 67776 599999999999999999999999999999999999999988
Q ss_pred HHHHHc
Q 040435 1339 LLAKER 1344 (1991)
Q Consensus 1339 ~~m~~~ 1344 (1991)
+.+.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 877543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.019 Score=71.92 Aligned_cols=193 Identities=15% Similarity=0.039 Sum_probs=107.4
Q ss_pred HHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCH--hHHHHHHHHHHHcC
Q 040435 1118 EACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KNI--VSWSAMVAAYGMNG 1190 (1991)
Q Consensus 1118 ~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~--~s~n~LI~ay~~~G 1190 (1991)
..+...|+++.|...+....+.. +.+...+..+...|...|++++|...+++..+ ++. ..|-.+...+...|
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 34455566666666666665544 23345566677777788888888888876654 122 24556777788888
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHhHHhcCC-CCCHHHHHHHHHHHHHcCCH
Q 040435 1191 LAHEALALVAEMKLGGL-QPNAVTT-L--SVLSACSHGGLVEEGLSF--FNSMVQDHGV-EPALEHYSCMVDMLARAGEL 1263 (1991)
Q Consensus 1191 ~~~eAl~lf~eM~~~Gi-~Pd~~T~-~--~LL~ac~~~G~~e~A~~i--~~~M~~~~gi-~P~~~~y~~Li~~l~r~G~~ 1263 (1991)
+.++|+.++++...... .+..... + .++.-....|..+.+.+. .........- ..........+.++...|+.
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 88888888888754321 1122211 1 223333344433333332 1111111000 00112223466677788889
Q ss_pred HHHHHHHHHCccCCCC---C----HHHHHHHHH--HHHHcCChhHHHHHHHHHHhcC
Q 040435 1264 DIAIDLINQMPDNLKA---T----ASAWGALLS--ACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1264 eeA~~l~~~m~~~~~p---d----~~~~~~Ll~--a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
++|..+++.+...... . ..+...++. ++...|+.+.|.+.+..++++-
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999988877542111 1 112222233 3557889999998888887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.2e-05 Score=60.10 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1242 GVEPALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1242 gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
|+.||..+|++||++|+|.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.046 Score=68.29 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=119.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVT-TLSVLSACSHGGLV 1227 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T-~~~LL~ac~~~G~~ 1227 (1991)
+...|.+.++++.|...|.+... ++.. ...+....++++...+...- +.|.... ...=...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 34477777899999999887543 1211 12233445666666555543 3444421 22224567789999
Q ss_pred HHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
..|...|.++++ ..| |...|+...-+|.+.|.+.+|++=.+...+..++....|.-=..++....+++.|.++|++
T Consensus 375 ~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 457 5789999999999999999999888777664455566676666777777899999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHhC
Q 040435 1307 ILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1307 llel~P~~~~~yvlL~~lya~~ 1328 (1991)
.++++|++......+...+...
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 9999999888776666666653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00066 Score=86.34 Aligned_cols=225 Identities=15% Similarity=0.104 Sum_probs=147.7
Q ss_pred CCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1040 FESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEA 1119 (1991)
Q Consensus 1040 ~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a 1119 (1991)
++|--..-..+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444455567778889999999999999876 5788888999999998899888887766 36676666555444
Q ss_pred HhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 040435 1120 CSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALV 1199 (1991)
Q Consensus 1120 ~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf 1199 (1991)
.....- +++|.++++....+--.+|+.++ .+.++++++.+.|
T Consensus 467 ~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 467 LHDPSL-----------------------------------YEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHL 508 (777)
T ss_pred ccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHH
Confidence 433333 34444444433322111222211 2256777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC
Q 040435 1200 AEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLK 1278 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~ 1278 (1991)
+.-.+.. ..-.-||-.+-.+..+.++++.|.+.|...+. ..|+ .+.|+.+..+|.+.|+..+|...+.+..+-..
T Consensus 509 e~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 509 ERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 7654422 22334566665566677777777777776654 6674 56778888888888888888877777765324
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1279 ATASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1279 pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
-+..+|...+-....-|+.++|.+++.+++++.-+
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 45567777777777778888888888877765443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.4e-05 Score=60.56 Aligned_cols=34 Identities=44% Similarity=0.644 Sum_probs=26.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCC
Q 040435 937 RGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMP 970 (1991)
Q Consensus 937 ~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~ 970 (1991)
+|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00051 Score=74.40 Aligned_cols=105 Identities=11% Similarity=-0.041 Sum_probs=91.0
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1232 SFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1232 ~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
.+++..++ +.|+ ++..+...+...|++++|.+.++......+.+..+|..+..++...|+++.|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555443 5555 455678889999999999999999887666789999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1312 AQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1312 P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
|+++..+..++.+|...|+.++|......-
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999876543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0022 Score=86.00 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHH
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLS 1289 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~ 1289 (1991)
...+..|..+..+.|.+++|.++++...+ +.|+ ......+...|.+.+++++|+..+++....-+.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 44444444444555555555555554443 4443 2334444445555555555555555554433334444444444
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
++...|+.++|..+|+++++.+|+++.+++.+++++...|+.++|..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555555555555555555555555555555555544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0062 Score=82.07 Aligned_cols=200 Identities=13% Similarity=0.145 Sum_probs=91.3
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDM 1154 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~ 1154 (1991)
...|-..|....+.++.++|.+++++.+.. +.+... +.-..+|.+++++
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REe------------------------------eEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREE------------------------------EEKLNIWIAYLNL 1506 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchh------------------------------HHHHHHHHHHHhH
Confidence 345666666667777777777777666542 211110 0011233333333
Q ss_pred HHhcCCHHHHHHHHHhccC-CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISR-KN-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLS 1232 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~-~d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~ 1232 (1991)
--.-|.-+...++|+++.+ -| ...|..|...|.+.++.++|.++|+.|.+. ++-....|...+..+.+...-+.|..
T Consensus 1507 En~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1507 ENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred HHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHH
Confidence 3333444444444444443 11 233444444455555555555555555432 22233344444444444444444555
Q ss_pred HHHHhHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1233 FFNSMVQDHGVEPA---LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1233 i~~~M~~~~gi~P~---~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
++.+.++ .-|. +....-.+.+-.+.|+.+.+..+|+......+.-...|+.++..-.+||+.+.++.+|+++++
T Consensus 1586 lL~rAL~---~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1586 LLKRALK---SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHHHh---hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4444433 2222 222333334444455555555555544332222334555555555555555555555555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0053 Score=75.29 Aligned_cols=176 Identities=12% Similarity=0.101 Sum_probs=133.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNG-LAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGG 1225 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G-~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G 1225 (1991)
.+-..+.+.++.++|+.+.+++.+ | +..+|+..-..+...| .+++++..++++.+...+ +..+|..--..+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence 344455566888999999988775 3 4457776666777777 579999999999976422 3344554444455566
Q ss_pred C--HHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc---CCh--
Q 040435 1226 L--VEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY---GNT-- 1297 (1991)
Q Consensus 1226 ~--~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~---g~~-- 1297 (1991)
. .++++.+++.+++ +.| +...|+....++.+.|++++|++.++++.+..+.+..+|+.....+... |..
T Consensus 121 ~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 5 3678889988876 567 5778888889999999999999999999876667889999988777654 222
Q ss_pred --hHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1298 --ELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1298 --e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+.+....+++++++|++.+++..++.+|...+
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~ 231 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDK 231 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCC
Confidence 46777778999999999999999999997743
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.076 Score=75.56 Aligned_cols=367 Identities=12% Similarity=-0.027 Sum_probs=183.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhcCCCChHH--HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040435 744 GNALMDFYMKWRFPDSAVAVFDDCICRDSVS--WNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLG 821 (1991)
Q Consensus 744 ~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s--~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g 821 (1991)
+......|...|++.+|.............. .......+...|+++.+..++..+.......+..........+...|
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3444555677788777777666665442221 11111234456777777777665522111111112223333445667
Q ss_pred ChHHHHHHHHHHHHhCCC------CchH-HHHHHH-HHHhh-CCHHHHHHHHHhcC----CCCH----HHHHHHHHHHHH
Q 040435 822 AYYEGLQVHGYIIRSGLW------AVHS-VQNSVL-SMYVD-ADMECARKLFDEMC----ERDV----ISWSVMIGGYVQ 884 (1991)
Q Consensus 822 ~~~~a~~l~~~~~k~G~~------~d~~-v~naLi-~~yak-g~~e~A~~vf~~m~----~~d~----~syn~LI~a~~~ 884 (1991)
+++++..++..+...--. +... ....+. ..+.. |+++.|...+++.. ..+. ..++.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 888888877766543111 1111 111121 12222 78888887776642 2221 234555556677
Q ss_pred cCChHHHHHHHHHHHhCC---C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHH
Q 040435 885 SAEAFSGLRLFRQMVSGF---K-NEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYR----GLGC---DLFVGNSLIDMY 953 (1991)
Q Consensus 885 ~G~~~eAl~lf~~M~~~~---g-v~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~----g~~p---d~~v~naLI~~y 953 (1991)
.|++++|...+.+..... | ..+-..++..+...+...|+++.|...+...... +... ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 888888888887765320 0 0011123344444566677777777776665442 2111 122333444555
Q ss_pred HhcCChHHHHHHhccCCC------C--CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCC
Q 040435 954 AKCKDTDSAFKVFSEMPQ------K--NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEV-DEITLVNILQICKCFVH 1024 (1991)
Q Consensus 954 ~k~G~~e~A~~lf~~m~~------~--dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~~lL~a~~~~g~ 1024 (1991)
...|++++|...+++... + ....+..+...+...|+.++|...+.+.....-.. ....+.
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~----------- 652 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI----------- 652 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh-----------
Confidence 566777777666655421 1 12223334445556666666666665553210000 000000
Q ss_pred hhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCch-------hhhhHHHHhhhhcCChHHHHHH
Q 040435 1025 PMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDV-------VLWSTMIAGFTLCGRPREAIAV 1097 (1991)
Q Consensus 1025 ~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~-------~syn~LI~~y~~~g~~eeAl~l 1097 (1991)
.......+..+...|+.+.|...+.....+.. ..+..+...+...|+.++|...
T Consensus 653 -------------------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 653 -------------------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred -------------------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00001112333446666666666655443211 1123445566677777777777
Q ss_pred HHHHHHC----CCCCCH-HHHHHHHHHHhhccChHHHHHHHHHHHHhc
Q 040435 1098 FQEMNQA----QEKPNA-ITIINLLEACSVATELSSSKWAHGIAIRRC 1140 (1991)
Q Consensus 1098 f~~M~~~----Gv~Pd~-~T~~~lL~a~a~~g~le~a~~i~~~~~k~g 1140 (1991)
+.+.... |..++. .+...+-.++...|+.+.|...+..+.+..
T Consensus 714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 714 LEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7765442 322222 234445555667788888877777777654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.01 Score=68.06 Aligned_cols=178 Identities=10% Similarity=0.066 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHhcc-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040435 1159 GAIEASRKAFDQIS-RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSM 1237 (1991)
Q Consensus 1159 G~~e~A~~lf~~m~-~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M 1237 (1991)
+++-.++.+.+... +.+..+.+.......+.|++++|++-|+...+-|---....|+..+. ..+.|+.+.|+++..++
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEI 204 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHH
Confidence 45555555555555 23444444444444556666666666666554322222444554442 33445666666666655
Q ss_pred HHhcCCC-------------CC--------HHHHHHHH-------HHHHHcCCHHHHHHHHHHCccC--CCCCHHHHHHH
Q 040435 1238 VQDHGVE-------------PA--------LEHYSCMV-------DMLARAGELDIAIDLINQMPDN--LKATASAWGAL 1287 (1991)
Q Consensus 1238 ~~~~gi~-------------P~--------~~~y~~Li-------~~l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~L 1287 (1991)
+++ |++ || .-|-+.++ ..+.+.|+++.|.+-+..||-+ -..|+++...+
T Consensus 205 ieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 205 IER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 542 321 11 12233343 3456789999999999999864 44577777665
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.-. -..++...+.+-+.-+++++|-.+.++..+.-+|++..-++-|+.+..
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 432 234566667777788899999888999999999999999999888765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0058 Score=82.00 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=121.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHH
Q 040435 1174 KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYS 1251 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~ 1251 (1991)
.++..+-.|.....+.|+.++|+.+++...+ +.||.. ....+..++.+.+.+++|+..+++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577888888899999999999999999987 678766 466777889999999999999998875 6775 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1252 CMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
.+..++.+.|++++|.++|+++....+.+..+|..+..++...|+.+.|..+|+++++......-.|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88999999999999999999998655556899999999999999999999999999998766555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0061 Score=82.16 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=161.2
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccC--------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISR--------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT 1214 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~ 1214 (1991)
.+...|-..|......+++++|++++++... .-...|.++++.....|.-+...+.|++..+. --....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3455666667777788999999999998764 23468999999999999888999999999863 2224458
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC--CHHHHHHHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA--TASAWGALLSACR 1292 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~a~~ 1292 (1991)
..|+..|.+.+..++|.++++.|.+++| -....|...++.+.+...-++|.++++++.+-.+. ......-...--.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999999866 56788999999999999999999999988653222 2333344444456
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1293 SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
++|+.+.|+.+++.++.-.|.....|.....+=.+.|.-+.+.++.++.-..++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 899999999999999999999888888888888888888888888877665554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.055 Score=62.39 Aligned_cols=336 Identities=15% Similarity=0.083 Sum_probs=199.3
Q ss_pred HHHHHhcCCchHHHHHHhhcCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCh
Q 040435 748 MDFYMKWRFPDSAVAVFDDCICR---DSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVL-VIQACRCLGAY 823 (1991)
Q Consensus 748 i~~y~k~G~~~~A~~lfd~m~~~---d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~-lL~a~~~~g~~ 823 (1991)
+..+.+..++++|.+++..-.++ +....+.|--.|-+..++..|-+.|+++-.. .|...-|.. -...+-+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhccc
Confidence 33345667788888887665443 4445555666677788888888888887653 344433332 12333445566
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHH-----HHhhCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 040435 824 YEGLQVHGYIIRSGLWAVHSVQNSVLS-----MYVDADMECARKLFDEMC-ERDVISWSVMIGGYVQSAEAFSGLRLFRQ 897 (1991)
Q Consensus 824 ~~a~~l~~~~~k~G~~~d~~v~naLi~-----~yakg~~e~A~~vf~~m~-~~d~~syn~LI~a~~~~G~~~eAl~lf~~ 897 (1991)
..|..+...|... ....+-.+. .|..+++..++.+.+..+ +.+..+-+.......+.|++++|++-|+.
T Consensus 95 ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 95 ADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 6666666555331 222222222 234489999999999998 46666666666667789999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCChHHHHHHhccCCCCC
Q 040435 898 MVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVG----NSLIDMYAKCKDTDSAFKVFSEMPQKN 973 (1991)
Q Consensus 898 M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~----naLI~~y~k~G~~e~A~~lf~~m~~~d 973 (1991)
..+-+|..|- ..|+..|.-+ +.++...|.....+++++|+...+... +-.+++-+-.+-..-+.. .=
T Consensus 170 AlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S-------al 240 (459)
T KOG4340|consen 170 ALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS-------AL 240 (459)
T ss_pred HHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH-------HH
Confidence 9987777764 5677666544 668899999999999999875432211 000000000000000000 01
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHH
Q 040435 974 KVSWNSALSGLVVNEKYSEALSLLYSMGKG-VNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLID 1052 (1991)
Q Consensus 974 v~s~n~LI~a~~~~g~~~eAl~lf~~M~~~-Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~ 1052 (1991)
+..+|.-...+.+.|+++.|.+.+..|.-+ .-..|.+|+..+.-.- ..+++..+..-+..++.... -...++..|+-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 223444445566778888888888888433 2456777766543322 12344555555556665543 34567778888
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----CchhhhhHHHHhhhhcCChHHHHHHHHHH
Q 040435 1053 GYSKCHLVELAWKLFNDVKK-----PDVVLWSTMIAGFTLCGRPREAIAVFQEM 1101 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~-----~d~~syn~LI~~y~~~g~~eeAl~lf~~M 1101 (1991)
.|+|..-++.|-.++-+=.. -+...|+.|=..-...-..++|++-+..+
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89998888888888765443 22333333222222234456666555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0044 Score=72.93 Aligned_cols=183 Identities=15% Similarity=0.065 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHhhccChHHHHHHHHHHHHhcccc--chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-Hh---HHH
Q 040435 1109 NAITIINLLEACSVATELSSSKWAHGIAIRRCLAE--EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-IV---SWS 1180 (1991)
Q Consensus 1109 d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~--d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~~---s~n 1180 (1991)
....+......+...|+++.|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+ .. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45566677778889999999999999988764321 124567788899999999999999999865 32 22 455
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHH
Q 040435 1181 AMVAAYGMN--------GLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYS 1251 (1991)
Q Consensus 1181 ~LI~ay~~~--------G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~ 1251 (1991)
.+..++.+. |+.++|++.|+++... .|+.. ....+.... . . .... . ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~-~--------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRL-A--------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHH-H--------HHHH
Confidence 555566554 7789999999999874 45543 222221110 0 0 0000 0 1123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1252 CMVDMLARAGELDIAIDLINQMPDNL---KATASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~~~~---~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
.+.+.|.+.|++++|...+++..... +.....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56677899999999999999886542 22357899999999999999999998887766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.76 Score=60.91 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHhCCChhHHHHHHHH
Q 040435 722 YIHGRLVHACLVKQ-GYESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLDHGTLGEGLWWFYK 797 (1991)
Q Consensus 722 ~~~a~~i~~~~lk~-g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~~g~~~~Al~lf~~ 797 (1991)
+..|.+..+.+++. +-.+-..++.+|+ ..|.|+.++|..+++.... .|..|...+-..|-+.+..++|..+|++
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44455444444433 2222233333333 3456666666666655432 2556666666666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 040435 798 ARVAGFEPNNSILVLVIQACRCLGAYYEG 826 (1991)
Q Consensus 798 M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a 826 (1991)
.... -|+..-...++.++.+.+++..-
T Consensus 103 ~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 103 ANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 5543 35555666666666666555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=69.45 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
...+...+.+.|++++|.+.++.+....+.+...|..+...+...|+.+.|...++++++.+|+++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 33444444445555555555544433223344445455545555555555555555555555555555555555555555
Q ss_pred CchhHHHHH
Q 040435 1330 LWVESSGTR 1338 (1991)
Q Consensus 1330 ~~~ea~~vr 1338 (1991)
++++|....
T Consensus 100 ~~~~A~~~~ 108 (135)
T TIGR02552 100 EPESALKAL 108 (135)
T ss_pred CHHHHHHHH
Confidence 555544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0027 Score=81.02 Aligned_cols=185 Identities=11% Similarity=0.000 Sum_probs=110.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGG 1225 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G 1225 (1991)
+.-+|..|+..|+..+|..+.....+ ||...|..+........-+++|.++++..-.. .-..+..-..+.+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccch
Confidence 34455555555555555554433322 34445555555544444455555555443211 0000000111245
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1226 LVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1226 ~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
+++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|......-+.+...|+.|-.+|.++|+-.+|.+.+
T Consensus 500 ~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 500 DFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred hHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 66666666665443 444 35567667777777888888888887776644445678888888888888888888888
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1305 SRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1305 e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+++++.+-++...+-.-..+-...|.|++|.+....|.
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 88888776666655555566677888888887666543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00033 Score=55.45 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA 1211 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~ 1211 (1991)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.02 Score=77.53 Aligned_cols=249 Identities=10% Similarity=0.052 Sum_probs=142.8
Q ss_pred chhhhhhHHHHHHhcCCHHHHHHHHHhcCC--Cchh-hhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1043 NELVLNSLIDGYSKCHLVELAWKLFNDVKK--PDVV-LWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEA 1119 (1991)
Q Consensus 1043 d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d~~-syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a 1119 (1991)
+...+..|+..|...+++++|.++.+...+ |+.. .|-.+...|.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 344666777777777777777777775443 3332 233333355556665555444 2221 1
Q ss_pred HhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHH
Q 040435 1120 CSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEAL 1196 (1991)
Q Consensus 1120 ~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl 1196 (1991)
.....+......++..+.+. ..+...+-.|..+|.+.|+.++|..+++++.+ .|....|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 11112222222222222221 12333555677777778888888888877765 3566777777777777 777787
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHCc
Q 040435 1197 ALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARA-GELDIAIDLINQMP 1274 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~-G~~eeA~~l~~~m~ 1274 (1991)
+++.+.... +...+.+..+.++|..+.+ ..|+ ...+-.+....... | +
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~--------~---- 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHRE--------F---- 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhc--------c----
Confidence 777776542 3445567777777777765 3343 22222222222111 1 1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1275 DNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1275 ~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
.--..+|--|-..|...++++.+..+++.+++++|.|..+..-++..|. +++.+-..+...++-.|+
T Consensus 220 ---~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l 286 (906)
T PRK14720 220 ---TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDI 286 (906)
T ss_pred ---chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcc
Confidence 1123455556666777778888888888888888888877777777766 555554444555544444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.005 Score=76.93 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
..+|+..+...++++.|.++++++.+. .|+ ....|+.++...++-.+|.+++++.....+.+...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 456677777889999999999998653 455 455688888888999999999999887656677788877888999
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1294 YGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
.++.+.|..+++++.++.|++..+|..|+.+|...|+|++|.-....|
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998776643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0097 Score=68.34 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~ 1294 (1991)
..+-.++.-.|+-+.+..+....... -..+.+.....+....+.|++.+|...+.+....-++|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 33344455555555555555544221 1113334444566666666666666666666554555666666666666666
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1295 GNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1295 g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
|+.+.|...+.+++++.|.++..+..|+-.|.-.|+.++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666666666666666666666666665444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.085 Score=62.04 Aligned_cols=282 Identities=10% Similarity=0.072 Sum_probs=172.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCchhhhhHHH---HhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhhccChHH
Q 040435 1053 GYSKCHLVELAWKLFNDVKKPDVVLWSTMI---AGFTLCGRPREAIAVFQEMNQAQEKPNAITIIN-LLEACSVATELSS 1128 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~~d~~syn~LI---~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~-lL~a~a~~g~le~ 1128 (1991)
.+...|++.+|+.-|....+.|...|-++. ..|...|+..-|+.-+.+..+ ++||-..-.. --....+.|.++.
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHH
Confidence 344455666666666666655554444433 345556666666666666554 3565332110 0112345666666
Q ss_pred HHHHHHHHHHhccccc--------------hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC
Q 040435 1129 SKWAHGIAIRRCLAEE--------------VAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1129 a~~i~~~~~k~g~~~d--------------~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~ 1191 (1991)
|..-+..+++...... .......+..+.-.|+...|+.....+.+ -|...|..-..+|...|.
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 6666666665432110 11112223344556788888887777664 466777777788888898
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH----HHHHH---HH------HHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALE----HYSCM---VD------MLA 1258 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~----~y~~L---i~------~l~ 1258 (1991)
+..|+.=++..-+.. .-+..++--+-..+...|+.+.++...++.++ +.|+.. +|-.| +. ...
T Consensus 205 ~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887666655432 22344454555556678888888887777654 677632 23222 11 233
Q ss_pred HcCCHHHHHHHHHHCccCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1259 RAGELDIAIDLINQMPDNLKAT-----ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd-----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
+.+++.++.+--+...++ .|. ...+..+-.+++..|++.+|++...++++++|++..++.--+.+|....++++
T Consensus 281 e~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 456677766666655442 333 12334444456678899999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 040435 1334 SSGTRLLA 1341 (1991)
Q Consensus 1334 a~~vr~~m 1341 (1991)
|..=...-
T Consensus 360 AI~dye~A 367 (504)
T KOG0624|consen 360 AIHDYEKA 367 (504)
T ss_pred HHHHHHHH
Confidence 87655433
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00036 Score=55.23 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 040435 773 VSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPN 806 (1991)
Q Consensus 773 ~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd 806 (1991)
++||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.017 Score=66.43 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=81.6
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++...- -++|..+++.+--+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 3344444555554444444321 24444445555666666666666666665542 2445556666666666666666
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
+|..-|.+..+ +.| +...++.|.-.|.-.|+++.|..++......-..|..+-..|.-+....|+++.|+.+..+
T Consensus 152 ~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666665544 344 2344555555555566666666666555443233555555555555666666666655544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.017 Score=71.45 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=56.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCC
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPNAVTTL-SVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~-~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~ 1262 (1991)
.+...|++++|+..++.+... .||..-|. .....+...++.++|.+.++.++. ..|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 344455555555555555442 33333332 223344455555555555555543 3444 3333444455555555
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
..+|..+++....+.+.|+..|..|..+|...|+..++..+
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 55555555555544444555555555555555555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.23 Score=58.59 Aligned_cols=193 Identities=13% Similarity=0.048 Sum_probs=123.5
Q ss_pred HhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHHcCCHHHHH
Q 040435 1120 CSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS---RKNIVSWSAMVAAYGMNGLAHEAL 1196 (1991)
Q Consensus 1120 ~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~---~~d~~s~n~LI~ay~~~G~~~eAl 1196 (1991)
+...|+...+......+++.. +.|...+..-..+|.+.|.+..|+.=+.... ..+....--+-..+...|+.+.++
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 334455555555555555443 4456666666777777777777766555443 345556666666777778888887
Q ss_pred HHHHHHHHCCCCCCHHH----HHHH-------H--HHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHH
Q 040435 1197 ALVAEMKLGGLQPNAVT----TLSV-------L--SACSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLA 1258 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~Pd~~T----~~~L-------L--~ac~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~ 1258 (1991)
...++-++ +.||... |..| - ......+.+-++++-.+..++ ..|. ...+..+-..+.
T Consensus 244 ~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 244 KEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeeccc
Confidence 77777765 5566642 1111 1 112344555566666655544 3454 123344445566
Q ss_pred HcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1259 RAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
..|++.+|++.-.+..+-.+.|+.++.--..||.....++.|+.-|+++.++++++..+-
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 778899998888877764444577888888888888889999999999999998876543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.093 Score=60.39 Aligned_cols=155 Identities=13% Similarity=0.107 Sum_probs=71.2
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHH
Q 040435 1153 DMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS----HGGLVE 1228 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~----~~G~~e 1228 (1991)
..|.+.|++++|++..+....-+....| +..+.+..+.+-|.+.+++|.+ --+..|.+-|..++. ..+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhhh
Confidence 3455556666666665553222222222 2223444455556666666654 123444444444432 223355
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN-TELGAGATSRI 1307 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~-~e~A~~~~e~l 1307 (1991)
+|.-+|++|.++ ..|+..+.+-+..+....|++++|..++++...+...++.+...++..-...|. .+...+...++
T Consensus 191 dAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 555555555432 344444444444444455555555555555544333344444444444444332 23334444444
Q ss_pred HhcCCCC
Q 040435 1308 LELEAQN 1314 (1991)
Q Consensus 1308 lel~P~~ 1314 (1991)
....|++
T Consensus 269 k~~~p~h 275 (299)
T KOG3081|consen 269 KLSHPEH 275 (299)
T ss_pred HhcCCcc
Confidence 4444443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0075 Score=64.21 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=91.7
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1198 LVAEMKLGGLQPNA-VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1198 lf~eM~~~Gi~Pd~-~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
+|++... ..|+. .....+...+...|++++|.+.++.+.. ..| +...+..+...|.+.|++++|...+++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554 34543 3455566677788999999999998865 345 577888889999999999999999998866
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1276 NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
..+.+...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 556678888889999999999999999999999999987663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.003 Score=67.96 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+.+..-.+...+...|++++|.++|+-.....+-+..-|..|..+|...|++++|+.+|.++..++|++|.++..++..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555566777889999999999999887645567889999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~ 1340 (1991)
...|+.+.|.+..+.
T Consensus 114 L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 114 LACDNVCYAIKALKA 128 (157)
T ss_pred HHcCCHHHHHHHHHH
Confidence 999999999986653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.01 Score=74.23 Aligned_cols=127 Identities=11% Similarity=0.116 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
..+..+|+..+...++++.|..+|+++.+.+...+-.|+..+...++-.+|++++++..+.. +-|......-...|...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 33445666777778999999999999998777677778888888999999999999998642 33555555555668899
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
++.+.|+++.+++++ ..|+ ..+|..|+..|.+.|++++|+-.++.+|-
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999976 7885 57999999999999999999999999974
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.039 Score=69.42 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=116.3
Q ss_pred hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCC-----CC---CHHH
Q 040435 1044 ELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQE-----KP---NAIT 1112 (1991)
Q Consensus 1044 ~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv-----~P---d~~T 1112 (1991)
...|--|-...+..++-..|+..+.+..+ .+....-+|.-.|...|.-.+|++.++.-..... .+ +..+
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~ 398 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF 398 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc
Confidence 34444444455555555555555555544 3445555666666667766777776666533210 00 0000
Q ss_pred HHHHHHHHhhccChHHHHH-HHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHH
Q 040435 1113 IINLLEACSVATELSSSKW-AHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGM 1188 (1991)
Q Consensus 1113 ~~~lL~a~a~~g~le~a~~-i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~ 1188 (1991)
-.. ........+....+ +++.....+...|..++..|.-.|--.|.++.|...|+.... | |...||.|...++.
T Consensus 399 ~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 399 ENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN 476 (579)
T ss_pred cCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence 000 01111111222223 333344455557777888888888888899999999887764 3 67789999888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
..+.++|+.-|.+.++ ++|.-+ ....|.-+|...|.+++|.++|-..+
T Consensus 477 ~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888999999888887 677654 23344456888888888888776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=73.33 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
+...+-++|+.+| .-..+.+++++|+..|...++ +.|+ ..-|..-..+|.+.|.++.|++=.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4555666666655 123467899999999998876 7874 56667778899999999999998888
Q ss_pred CccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 040435 1273 MPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASS 1323 (1991)
Q Consensus 1273 m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ 1323 (1991)
.....+-...+|..|..+|...|++++|+++|+++++++|++......|..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 876433356799999999999999999999999999999999865444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00096 Score=52.66 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 040435 772 SVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEP 805 (1991)
Q Consensus 772 ~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~P 805 (1991)
+.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0011 Score=52.38 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP 1209 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P 1209 (1991)
.+||++|.+|++.|+.+.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.064 Score=66.56 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=63.3
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
..|..++|+..++.++.. .| |+.......+.+.+.++.++|.+.++++....+.....|-.+..++...|+..+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 455556666666655442 33 34444555556666666666666666655432223555555556666666666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1302 GATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1302 ~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
+.+++.+.-+|+++..|.+|+.+|...|+-.++...+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 6666666666666666666666665555555554444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.076 Score=60.66 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL-SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL-~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G 1261 (1991)
-+....|+.+.|...++++...= |...-...+= .-+-..|.+++|.++++.++++ +| |..+|---+-++-..|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcC
Confidence 33444455555555555554331 2222111111 1122345555555555555443 23 3344444444444455
Q ss_pred CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1262 ELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+--+|++-+.+..+.+..|...|.-|-..|...|+++.|.-.+++++-+.|.++..+-.++.++...|-
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 555555555555444555555555555555555555555555555555555555555555555544444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.11 Score=59.41 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=119.6
Q ss_pred HHHhcCCHHHHHHHHHhccC--C---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K---NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~---d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
+..-+|+.+.|...++.+.. | -+.-..+|. +--.|++++|+++++...+.. +.|.+++.-=+...-..|.--
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcH
Confidence 33446777888888877654 2 222222222 345789999999999999876 557777776666666777777
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG---NTELGAGATS 1305 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g---~~e~A~~~~e 1305 (1991)
+|++-+...++. +.-|.+.|.-+.++|...|+++.|.-.++++.-..|-++..+..|...+...| |.+.|.+.|.
T Consensus 138 ~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 138 EAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888877775 67789999999999999999999999999987544556677777777766555 7899999999
Q ss_pred HHHhcCCCCchH
Q 040435 1306 RILELEAQNSAG 1317 (1991)
Q Consensus 1306 ~llel~P~~~~~ 1317 (1991)
+++++.|.+...
T Consensus 216 ~alkl~~~~~ra 227 (289)
T KOG3060|consen 216 RALKLNPKNLRA 227 (289)
T ss_pred HHHHhChHhHHH
Confidence 999999966443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.63 Score=57.16 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLV 1227 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~ 1227 (1991)
.+.-|.-+...|....|.++-.+..-||-.-|-..|.+|+..|++++-.++-.. +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344456667789999999999998889999999999999999999877765432 22347888999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc
Q 040435 1228 EEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~ 1294 (1991)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.. |...+..+...|..+
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k-----d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK-----DIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC-----CHHHHHHHHHHCCCC
Confidence 9999888763 23556788999999999988877665 445555555544443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0085 Score=57.57 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+..+...+.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|...++++++..|.+...+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34455666667777777777776654333444566666666777777777777777777777777766777777777777
Q ss_pred CchhHHHHHH
Q 040435 1330 LWVESSGTRL 1339 (1991)
Q Consensus 1330 ~~~ea~~vr~ 1339 (1991)
++++|.....
T Consensus 83 ~~~~a~~~~~ 92 (100)
T cd00189 83 KYEEALEAYE 92 (100)
T ss_pred hHHHHHHHHH
Confidence 7777665544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.015 Score=72.97 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=86.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
..+...|++++|+++|+++++ +.| +...|..+..+|.+.|++++|+..++++....+.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 445677899999999998876 566 4678888889999999999999999998775556788999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1298 ELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
+.|+..++++++++|+++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999998877665443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.042 Score=66.55 Aligned_cols=137 Identities=11% Similarity=0.130 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA-CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a-c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
.+|-.++...-+.+..+.|..+|.+.++.+ .-....|...... +...++.+.|.++|+..++. +..+...|..-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2223334333333 33467777899999999887 4446678888999
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATA---SAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~---~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.+.+.|+.+.|..+|++....+.++. .+|...+.--..+|+.+....+.+++.+.-|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999987644433 59999999999999999999999999999988554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.012 Score=81.13 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=84.6
Q ss_pred HHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeC
Q 040435 1720 YMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATL 1799 (1991)
Q Consensus 1720 ~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~ 1799 (1991)
.+.++++++|.++.|||+.++++.+++++++.+|+..++.+.|+.++ .|+++++++.-+.++++||......+|++..
T Consensus 367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~-~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~- 444 (719)
T TIGR00921 367 EIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEKF-IPQDLPSLQARKVIESHMGGSHDFATILVKA- 444 (719)
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhhc-CCCCcHHHHHHHHHHHHhCCCCcceEEEEEc-
Confidence 35578899999999999999999999999999999999999998765 6999999999999999998653445666654
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhcc
Q 040435 1800 PDPKNGKQPSIITEDNFQLLFEMQKKVDGV 1829 (1991)
Q Consensus 1800 ~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l 1829 (1991)
+++.+++.++++.++++.+++.
T Consensus 445 --------~~~~~~~~l~~l~~l~~~l~~~ 466 (719)
T TIGR00921 445 --------DDVRDPELVRFMDELSRDIKAT 466 (719)
T ss_pred --------CCCCCHHHHHHHHHHHHHHhhc
Confidence 2578899999999999888764
|
Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.043 Score=61.36 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=91.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN--AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYS 1251 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd--~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~ 1251 (1991)
....+..+...|...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|.+++.+.++ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 345677777777888888888888888876433332 34566677777788888888888887765 445 355666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCc
Q 040435 1252 CMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
.+..+|...|+...|..-++... ..++.|...++++++++|++ |..+.+.+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~--------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE--------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH--------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 66777777777666554433322 12577889999999999887 77777777777764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0023 Score=49.30 Aligned_cols=31 Identities=32% Similarity=0.593 Sum_probs=27.3
Q ss_pred hhhhHHHHhhhhcCChHHHHHHHHHHHHCCC
Q 040435 1076 VLWSTMIAGFTLCGRPREAIAVFQEMNQAQE 1106 (1991)
Q Consensus 1076 ~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv 1106 (1991)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0025 Score=49.05 Aligned_cols=31 Identities=29% Similarity=0.556 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGL 1207 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi 1207 (1991)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.52 E-value=3.9 Score=51.67 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhcC---CHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1128 SSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG---AIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVA 1200 (1991)
Q Consensus 1128 ~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G---~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~ 1200 (1991)
++..+++..+..-...+..+|.++.+.--..- ..+.....++++.. .-..+|-..|..-.+..-...|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 34455555544443344444444433211111 13333444444432 223467777777777777899999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-CC
Q 040435 1201 EMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN-LK 1278 (1991)
Q Consensus 1201 eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-~~ 1278 (1991)
+..+.+..+ +.....+++.-+ -.++.+-|.++|+.=++.+|-.| .--.+.++-|.+.++-..|..+|++.... +.
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 999998888 555566666544 46888999999998777655444 34456788889999999999999998764 34
Q ss_pred CC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhCCCchhHH
Q 040435 1279 AT--ASAWGALLSACRSYGNTELGAGATSRILELEAQNS----AGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1279 pd--~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~----~~yvlL~~lya~~G~~~ea~ 1335 (1991)
|+ ..+|..+|.--..-|+.+.+.++-++.+..-|.+- ..-.++..-|.-.+....-.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 43 46999999999999999999999888877655210 11233445555555554433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=4.2 Score=52.29 Aligned_cols=386 Identities=11% Similarity=0.080 Sum_probs=189.3
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHH--------HHHHHHHHHHccCChHHH
Q 040435 856 DMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQ--------SLVSVLKACTNLRDLTMG 927 (1991)
Q Consensus 856 ~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~--------T~~~lL~a~~~~g~~~~a 927 (1991)
.+++|.+..+.- |....|..+.....+.-.++.|...|-+...-.|++.-.. .-.+=+. +--|.+++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 456666666554 4556787777666666666666666655533223221000 0000111 113556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 040435 928 RMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQK-----NKVSWNSALSGLVVNEKYSEALSLLYSMGK 1002 (1991)
Q Consensus 928 ~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~-----dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~ 1002 (1991)
++++-.+-++. .-|.++.+.|++-...++++.-..- -..+|+.+-..++....+++|.+.|..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66655554433 2345566666666666665442211 124566666666666666666666654321
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHH
Q 040435 1003 GVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMI 1082 (1991)
Q Consensus 1003 ~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI 1082 (1991)
....+.++-+...+++-+.+ ...++.+....-.+.+|+.+.|.-++|.+.|-+-..|- +-+
T Consensus 825 ---------~e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv 885 (1189)
T KOG2041|consen 825 ---------TENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAV 885 (1189)
T ss_pred ---------hHhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHH
Confidence 01122233222222221111 12234455566667778888888888777776655443 234
Q ss_pred HhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHH
Q 040435 1083 AGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIE 1162 (1991)
Q Consensus 1083 ~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e 1162 (1991)
..|...+++.+|.++-++... |...|+ |.-+ +-++ +.+.. + ---|.++.|.|+.-
T Consensus 886 ~tCv~LnQW~~avelaq~~~l----~qv~tl---iak~--------aaql---l~~~~------~-~eaIe~~Rka~~~~ 940 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQL----PQVQTL---IAKQ--------AAQL---LADAN------H-MEAIEKDRKAGRHL 940 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccc----hhHHHH---HHHH--------HHHH---Hhhcc------h-HHHHHHhhhcccch
Confidence 566667777777776655432 222222 2111 1111 11111 0 12367788888888
Q ss_pred HHHHHHHhccCCCH---hHHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1163 ASRKAFDQISRKNI---VSWSAMVAAYG----MNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFN 1235 (1991)
Q Consensus 1163 ~A~~lf~~m~~~d~---~s~n~LI~ay~----~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~ 1235 (1991)
+|-+++.+|.++.. +.|-.+=..|. -..+..++++-.+.....|..-|... +...|..+++-++.+
T Consensus 941 daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~ 1013 (1189)
T KOG2041|consen 941 DAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILE 1013 (1189)
T ss_pred hHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHH
Confidence 88888877764211 11111111111 11233445555555555554433322 223444444444444
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCcc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1236 SMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPD--NLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1236 ~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
..-+ -....|+-.|..-....|+.+.|++.--.+.. .+-|...+|.-|.-+.+..+.+...-+++-++-.
T Consensus 1014 n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1014 NTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred hhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 3221 11245666666667778999998876544443 2444556665554443333344444444444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.48 E-value=5.8 Score=53.13 Aligned_cols=90 Identities=13% Similarity=-0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHH---HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1250 YSCMVDMLARAGELD---IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~e---eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
-+.|++++-|.++.. +|+-+++.-....+-|..+--.||..|.--|-+..|...|+-+--..-...+.=.++...+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 456777777777644 55555655544334455566667777777788887877777664333333333334456667
Q ss_pred hCCCchhHHHHHH
Q 040435 1327 AGGLWVESSGTRL 1339 (1991)
Q Consensus 1327 ~~G~~~ea~~vr~ 1339 (1991)
..|+|..+.....
T Consensus 519 t~g~~~~~s~~~~ 531 (932)
T KOG2053|consen 519 TSGRSSFASNTFN 531 (932)
T ss_pred hcccchhHHHHHH
Confidence 7778877776543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.023 Score=54.45 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=44.9
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+...|++++|..+++.+.+ ..|+ ...+..+...+...|++++|.+.+++.....+.+..+|..+...+...|+.+
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 33344445555555544433 2221 2334444555555555555555555544332333345555555566666666
Q ss_pred HHHHHHHHHHhcCC
Q 040435 1299 LGAGATSRILELEA 1312 (1991)
Q Consensus 1299 ~A~~~~e~llel~P 1312 (1991)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666655554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.3 Score=56.45 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=110.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH----H
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLA----R 1259 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~----r 1259 (1991)
..|++.|++++|++..... -..+....+. ..+.+...++-|.+.++.|.+ +. +-.+.+.|..++. -
T Consensus 116 ~i~~~~~~~deAl~~~~~~----~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG----ENLEAAALNV--QILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhcc----chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhcc
Confidence 4578899999999988762 2223332222 234567788999999999954 33 3345554555544 3
Q ss_pred cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1260 AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
.+.+.+|.-+|++|.++.+|+..+.+-+..+|...|++++|+.+++.++..++.+|.+...+...--..|+-.++.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 5689999999999999889999999999999999999999999999999999999998888888888889865543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0074 Score=55.51 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
...+.+.|++++|.+.+++..+..+-+..+|..+..++...|++++|...++++++++|++|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 44566667777777777766665444566666677777777777777777777777777654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.038 Score=56.97 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC---CCHHHHHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLK---ATASAWGALLS 1289 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~---pd~~~~~~Ll~ 1289 (1991)
+..+...+...|++++|.+.+..+.+.+.-.| ....+..+..++.+.|++++|.+.++.+....+ ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555566667777776666654321111 123455566677777777777777776654211 12456666777
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
++...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777777777777777777776543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.063 Score=58.21 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH--HHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA----VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPAL--EHY 1250 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~--~~y 1250 (1991)
..|..++..+. .++...+...++.+.+.. |+. .....+...+...|++++|...|+..... .-.|.. ...
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHH
Confidence 34555565553 666677777777776543 222 12223335556677777777777776553 112211 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
-.|..++...|++++|+..++..... ......+..+...+...|+.+.|+.+|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDE-AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCc-chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34566666677777777777665432 234455666666666777777777766654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.031 Score=57.61 Aligned_cols=97 Identities=16% Similarity=0.064 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---chHHHHH
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKAT---ASAWGALLSACRSYGNTELGAGATSRILELEAQN---SAGYLLA 1321 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd---~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~---~~~yvlL 1321 (1991)
..+..++..+.+.|++++|.+.++.+....+.+ ...+..+..++...|+++.|...++++++..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888999999999999999997642222 4577778999999999999999999999998885 5678889
Q ss_pred HHHHHhCCCchhHHHHHHHHHHc
Q 040435 1322 SSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1322 ~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
+.+|...|++++|........+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999887766554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0018 Score=74.45 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=31.6
Q ss_pred hhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeecc
Q 040435 482 LNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVET 530 (1991)
Q Consensus 482 ~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d 530 (1991)
++-+|+| +.. ++|||+|||+|.||++++++||+.. -+..++-+|
T Consensus 157 ftKLrVf--eqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD 200 (368)
T COG5597 157 FTKLRVF--EQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPD 200 (368)
T ss_pred hHHHHhh--hhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCc
Confidence 4445554 332 4899999999999999999999975 233444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.72 Score=63.13 Aligned_cols=150 Identities=8% Similarity=0.033 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC
Q 040435 1112 TIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1112 T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~ 1191 (1991)
.+..+..+|.+.|..+++..+++.+++.. +.++.+.|.+...|+.. ++++|++++.+.. .-|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhc
Confidence 44445555556666666666666666655 55667777777778777 8888887776553 23666678
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAVTT-LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLI 1270 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~T~-~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~ 1270 (1991)
+.++.++|.++... .|+.+.+ .-++. .+....|..--+..+--+..-|-...+++++..++
T Consensus 185 ~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 185 YVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred chHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 88888888888763 3443332 22222 22221122222334444555566666777777777
Q ss_pred HHCccCCCCCHHHHHHHHHHHH
Q 040435 1271 NQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1271 ~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
+.+.+..+.|..+..-|+..|+
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 7776644445555666666655
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.11 Score=56.25 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=33.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
+...+...|++++|...|+...... |+ ..+...|...+...|+++.|...++.. .-.+-.+..+.+++.+|...
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHC
Confidence 3344444444444444444444321 11 122333334444444444444444331 12222333344444444444
Q ss_pred CCchhHHH
Q 040435 1329 GLWVESSG 1336 (1991)
Q Consensus 1329 G~~~ea~~ 1336 (1991)
|++++|..
T Consensus 132 g~~~~A~~ 139 (145)
T PF09976_consen 132 GDYDEARA 139 (145)
T ss_pred CCHHHHHH
Confidence 44444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.017 Score=72.45 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
...+.+.|++++|+++++++.+..+.+...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45567889999999999999876666788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 040435 1334 SSGTRLLAK 1342 (1991)
Q Consensus 1334 a~~vr~~m~ 1342 (1991)
|........
T Consensus 89 A~~~~~~al 97 (356)
T PLN03088 89 AKAALEKGA 97 (356)
T ss_pred HHHHHHHHH
Confidence 998766443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.093 Score=68.64 Aligned_cols=140 Identities=16% Similarity=0.075 Sum_probs=85.8
Q ss_pred CCHhHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHhHH
Q 040435 1174 KNIVSWSAMVAAYGMNG-----LAHEALALVAEMKLGGLQPNA-VTTLSVLSACSHG--------GLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G-----~~~eAl~lf~eM~~~Gi~Pd~-~T~~~LL~ac~~~--------G~~e~A~~i~~~M~~ 1239 (1991)
.+...|...+.|..... ....|+.+|++..+ ..|+- ..+..+..++... +.+..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 46667777776644322 26678888888877 45654 2333332222111 122333333333222
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1240 DHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1240 ~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
......+...|..+.-.+...|++++|...++++.. ..|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 111222446676666666667888888888888776 3467777888888888888888888888888888887775
|
|
| >COG1033 Predicted exporters of the RND superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.011 Score=78.62 Aligned_cols=96 Identities=4% Similarity=0.210 Sum_probs=84.5
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeCCCCCC
Q 040435 1725 YRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLPDPKN 1804 (1991)
Q Consensus 1725 F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~~~~~~ 1804 (1991)
|.++|.|+.+||+.++++.+++++++.+|..+++.+++ -.-..|++++..+.-+.++++|| +-++.|.|.-
T Consensus 2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~-~~~~~~~d~~~~k~y~~~~~~f~--~~~~~i~v~i------ 72 (727)
T COG1033 2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSG-TETFLPKDNEEYKNYDRLYKEFG--SGTSLIVVVI------ 72 (727)
T ss_pred hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCC-ccccCCCchHHHHHHHHHHHhhC--CCCceEEEEE------
Confidence 78999999999999999999999999999999999999 77778999999999999999998 4455665554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhccc
Q 040435 1805 GKQPSIITEDNFQLLFEMQKKVDGVR 1830 (1991)
Q Consensus 1805 ~~~~~vL~~~~l~~~~~l~~~I~~l~ 1830 (1991)
++.+|++++.++.+.+++++++.+.
T Consensus 73 -e~~dv~~~e~~~~~~~l~~~l~~i~ 97 (727)
T COG1033 73 -EGDDVFSPEVLEALDSLEERLEEIP 97 (727)
T ss_pred -eCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 2236999999999999999999873
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=5.8 Score=52.11 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEE 1229 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~ 1229 (1991)
--+.-+...|...+|.++-.+.+-||-..|--=+.+++..+++++-+++-+.+. .++-|.-...+|.+.|+.++
T Consensus 689 dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 334445566777788888777777777777777777888887777666655543 14556667777888888888
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1230 GLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
|.+++-+.. + +.-.+.+|.++|++.+|.++--+-.
T Consensus 763 A~KYiprv~------~----l~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 763 AKKYIPRVG------G----LQEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HhhhhhccC------C----hHHHHHHHHHhccHHHHHHHHHHhc
Confidence 887776441 1 1146777788888887777655443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.0081 Score=55.68 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLAS 1322 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~ 1322 (1991)
.+.|++++|.++++++....+.+..++..|..+|...|++++|...++++.+.+|+++..+.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34566666666666655444445566666666666666666666666666666666555544444
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.098 Score=58.21 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN--AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSC 1252 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd--~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~ 1252 (1991)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|++.++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34556666666666777777777776654322221 23555566666666677777766666654 3332 344444
Q ss_pred HHHHHH
Q 040435 1253 MVDMLA 1258 (1991)
Q Consensus 1253 Li~~l~ 1258 (1991)
+..++.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 554554
|
|
| >COG1033 Predicted exporters of the RND superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.02 Score=76.21 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEE
Q 040435 1718 QGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILA 1797 (1991)
Q Consensus 1718 ~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~ 1797 (1991)
...+...|.+.+.+.++||+.++++.++++++..+|..++..++|-++ +.|+++|+.+..+..+++||.- -.-.+++.
T Consensus 365 ~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs-~~~~i~~~ 442 (727)
T COG1033 365 KGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGS-DPITIVLE 442 (727)
T ss_pred chhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCC-ceEEEEEE
Confidence 345668888999999999999999999999999999999999999999 8999999999999999999988 34445555
Q ss_pred eCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccc
Q 040435 1798 TLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVR 1830 (1991)
Q Consensus 1798 ~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~ 1830 (1991)
+ ++..+++.++|+.++++.+++..
T Consensus 443 ~---------~d~~dp~~l~~md~l~~~l~~~~ 466 (727)
T COG1033 443 A---------EDVRDPEVLRWMDELEEELEKGE 466 (727)
T ss_pred C---------CCCCChHHHHHHHHHHHHHHhcc
Confidence 4 24489999999999999998764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.086 Score=68.97 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=104.4
Q ss_pred CCCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHH
Q 040435 1205 GGLQPNAVTTLSVLSACSHG--G---LVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARA--------GELDIAIDLI 1270 (1991)
Q Consensus 1205 ~Gi~Pd~~T~~~LL~ac~~~--G---~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~--------G~~eeA~~l~ 1270 (1991)
.+.+.|...|...+.+..+. + ..++|..+|++.++ ++|+ ...|..+..++... +++..|.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34567888899998886543 2 37799999999986 7887 45555544444322 2344555555
Q ss_pred HHCcc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcc
Q 040435 1271 NQMPD--NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKV 1348 (1991)
Q Consensus 1271 ~~m~~--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k 1348 (1991)
++... ..+.++.+|.++.-.....|+.++|...++++++++| +..+|++++.+|...|+.++|......-....- -
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P-~ 485 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP-G 485 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C
Confidence 55433 1344667888887777888999999999999999999 578999999999999999999876543322221 1
Q ss_pred cCcEEEEEE
Q 040435 1349 VAGNSLVHV 1357 (1991)
Q Consensus 1349 ~~g~s~i~v 1357 (1991)
.|..+||+-
T Consensus 486 ~pt~~~~~~ 494 (517)
T PRK10153 486 ENTLYWIEN 494 (517)
T ss_pred CchHHHHHh
Confidence 344666653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.048 Score=60.65 Aligned_cols=91 Identities=10% Similarity=-0.149 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLK-A--TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASS 1323 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~-p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ 1323 (1991)
...|..++..+...|++++|...+++.....+ + ...+|..+...+...|+.++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 45667777788888999999999988854211 1 24589999999999999999999999999999999999999999
Q ss_pred HHH-------hCCCchhHHHH
Q 040435 1324 MYA-------AGGLWVESSGT 1337 (1991)
Q Consensus 1324 lya-------~~G~~~ea~~v 1337 (1991)
+|. ..|++++|...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHH
Confidence 998 77787766543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.028 Score=52.27 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC-CchhHHHHHH
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG-LWVESSGTRL 1339 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G-~~~ea~~vr~ 1339 (1991)
++.+|..+...+...|+++.|+..++++++++|+++..+..++.+|...| ++++|.+...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 46788888888888899999999999999999998888999999999988 6888776543
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.0089 Score=58.18 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHCccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHH
Q 040435 1260 AGELDIAIDLINQMPDNLK--ATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~~~--pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
.|++++|+.+++++.+..+ ++...|..+..++...|+++.|..++++ .+.+|.++....+++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3566677777766655311 1445566667777777777777777777 666676666666677777777777777765
Q ss_pred H
Q 040435 1338 R 1338 (1991)
Q Consensus 1338 r 1338 (1991)
.
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 4
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.03 Score=65.55 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=78.6
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
.+-+.+.+++++|+..+.++.+-.+.|++.|..-..+|.+.|.++.|++..+.++.++|...-+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45577889999999999999886667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 040435 1334 SSGTRL 1339 (1991)
Q Consensus 1334 a~~vr~ 1339 (1991)
|+...+
T Consensus 168 A~~ayk 173 (304)
T KOG0553|consen 168 AIEAYK 173 (304)
T ss_pred HHHHHH
Confidence 887744
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.025 Score=52.61 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCC
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG-NTELGAGATSRILELEA 1312 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g-~~e~A~~~~e~llel~P 1312 (1991)
+...|..+...+.+.|++++|+..|++..+..+.+..+|..+..++...| +.++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35678888888999999999999999887755567889999999999999 79999999999999988
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.11 Score=58.18 Aligned_cols=85 Identities=13% Similarity=-0.008 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDN--LKA-TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASS 1323 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ 1323 (1991)
...|..+...+.+.|++++|...+++.... ..+ ....|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345677777788888888888888877542 111 14678888888889999999999999999999999888888899
Q ss_pred HHHhCCCc
Q 040435 1324 MYAAGGLW 1331 (1991)
Q Consensus 1324 lya~~G~~ 1331 (1991)
+|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 98888774
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.066 Score=63.21 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=91.4
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCchHH
Q 040435 1243 VEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG---NTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1243 i~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g---~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
-.| |.+.|-.|...|.+.|+++.|..-+.+..+.-++++..+..+..++.... ...++..+++++++++|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 356 68999999999999999999999999988766778889988888876543 56889999999999999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1319 LLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
.+|+..+...|++.+|...+.+|-+..-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998887654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.37 E-value=5.6 Score=49.00 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCh
Q 040435 946 GNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHP 1025 (1991)
Q Consensus 946 ~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~ 1025 (1991)
.+.-|.-+...|....|.++-.+..-||..-|-..|.+++..+++++-..+... +-.++-|-.++.+|...|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888888888888888888889999999888877665432 11346677778888887877
Q ss_pred hhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHH
Q 040435 1026 MECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFN 1068 (1991)
Q Consensus 1026 ~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~ 1068 (1991)
.+|...... ..+..-+.+|.++|++.+|.+.--
T Consensus 254 ~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHH
Confidence 777665543 123556778888888888766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR00833 actII Transport protein | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.049 Score=76.61 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=82.5
Q ss_pred HHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCce-EEEEEEeCC
Q 040435 1722 LSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRI-EQLILATLP 1800 (1991)
Q Consensus 1722 ~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~-~qvii~~~~ 1800 (1991)
+++|.+++.++.|||+.++++.+++.+++.+|+.+++++.|+.+ +.|+++++++..+..+++||+..-. -+|++.+.
T Consensus 347 ~~~~~~l~~~v~r~p~~vl~v~~~ll~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~- 424 (910)
T TIGR00833 347 RFIWRRLGTAVVRRPWPILVTTLIISGVSLLALPLIRTGYDDEK-MIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSD- 424 (910)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCcCCCcHh-hcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCC-
Confidence 35788999999999999999999999999999999999888776 5789999999999999999886433 34454531
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhcc
Q 040435 1801 DPKNGKQPSIITEDNFQLLFEMQKKVDGV 1829 (1991)
Q Consensus 1801 ~~~~~~~~~vL~~~~l~~~~~l~~~I~~l 1829 (1991)
.++-+++.++.+.++++.+++.
T Consensus 425 -------~~~~~p~~l~~l~~l~~~l~~~ 446 (910)
T TIGR00833 425 -------HDVRNPALLADIDRFEREIKAV 446 (910)
T ss_pred -------CCCCCHHHHHHHHHHHHHHhcC
Confidence 2566889999999999988865
|
Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate. |
| >TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.035 Score=76.72 Aligned_cols=86 Identities=8% Similarity=0.117 Sum_probs=72.6
Q ss_pred ccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeCCCCCCCCCCCCCCH
Q 040435 1734 ANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLPDPKNGKQPSIITE 1813 (1991)
Q Consensus 1734 ~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~~~~~~~~~~~vL~~ 1813 (1991)
+|||.++++.+++++++..|+.++++++|++ -|.|++++.++..+.++++||. ...++.+.-+ +++++++
T Consensus 2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~~-~~~~~d~~~~~~~~~~~~~fg~--~~~~~~v~v~-------~~~~~~~ 71 (719)
T TIGR00921 2 RFRTAIILVFLALLILSAYGAQHLNVESDTE-KQLPKDFESYKWYHVLQREFGT--STKTLLVVIE-------GDDVTRK 71 (719)
T ss_pred CCchhhHHHHHHHHHHHHHhcccceeccChh-hhCCCCCHHHHHHHHHHHHHCC--CCeEEEEEEE-------eCCCCCH
Confidence 7999999999999999999999999999995 6789999999999999999982 2334333221 1368999
Q ss_pred HHHHHHHHHHHHHhcc
Q 040435 1814 DNFQLLFEMQKKVDGV 1829 (1991)
Q Consensus 1814 ~~l~~~~~l~~~I~~l 1829 (1991)
+.++.+.++++.++++
T Consensus 72 ~~l~~i~~l~~~l~~~ 87 (719)
T TIGR00921 72 PVLDYMRRLEQRLREK 87 (719)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999875
|
Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.051 Score=49.90 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+...+...|+++.|+..++++++..|+++..+..++.+|...|++++|....+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999998776554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.065 Score=50.37 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=48.3
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHH
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLL 1320 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvl 1320 (1991)
.+|.+.+++++|.+.++.+....+.+...|..+...+...|+++.|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 456777778888887777776555567777777777778888888888888888888876654443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=2 Score=54.54 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=99.1
Q ss_pred HHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1034 VILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITI 1113 (1991)
Q Consensus 1034 ~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~ 1113 (1991)
.+.+.|-.|+... +.+.++-.|++.+|-++|.+ +|.-..|+++|.+|+.-
T Consensus 625 ~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF--------- 674 (1081)
T KOG1538|consen 625 ERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF--------- 674 (1081)
T ss_pred HHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH---------
Confidence 4445555555432 33455667788888877753 56667777777776531
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHH
Q 040435 1114 INLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAH 1193 (1991)
Q Consensus 1114 ~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~ 1193 (1991)
-..+-+...|+-++-+.+.+.-. ...-++.--.+-..|+...|+.++|..+. +.+|-.+
T Consensus 675 -D~aQE~~~~g~~~eKKmL~RKRA--~WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d 733 (1081)
T KOG1538|consen 675 -DYAQEFLGSGDPKEKKMLIRKRA--DWARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVD 733 (1081)
T ss_pred -HHHHHHhhcCChHHHHHHHHHHH--HHhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHH
Confidence 11222333333333322222111 01111111123344555566666664432 4455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
-++++-+++-. .+..+...+..-+-+...+..|-++|.+|-. ...++++....|++.||..+-++.
T Consensus 734 ~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 734 MLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhC
Confidence 55555544432 2334444444444566677778888888732 346788888999999999999998
Q ss_pred ccCCCCC
Q 040435 1274 PDNLKAT 1280 (1991)
Q Consensus 1274 ~~~~~pd 1280 (1991)
++ +.||
T Consensus 800 Pe-~~~d 805 (1081)
T KOG1538|consen 800 PE-FKDD 805 (1081)
T ss_pred cc-cccc
Confidence 87 4444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.019 Score=45.55 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1304 TSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1304 ~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999975
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.84 E-value=18 Score=46.91 Aligned_cols=149 Identities=11% Similarity=0.059 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHH
Q 040435 855 ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPD----GQSLVSVLKACTNLRDLTMGRMV 930 (1991)
Q Consensus 855 g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd----~~T~~~lL~a~~~~g~~~~a~~l 930 (1991)
|++++|.+++-+|.++|. .|..+.+.|++....++++.- |-..| ...+..+-..++....++.|.+.
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999885 456667778887777776542 22222 23455555555555556666555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH
Q 040435 931 HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEI 1010 (1991)
Q Consensus 931 ~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~ 1010 (1991)
+..-.. ...++.+|.+...+++-+.+-+.+++ |....-.|...+...|..++|.+.|-+.-. |
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p--- 881 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P--- 881 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC----c---
Confidence 543211 12345555555556665555555554 334555677778888888888877755421 1
Q ss_pred HHHHHHHHHhccCChhhHHHH
Q 040435 1011 TLVNILQICKCFVHPMECKSV 1031 (1991)
Q Consensus 1011 T~~~lL~a~~~~g~~~~a~~i 1031 (1991)
...+..|..++.+.+|.++
T Consensus 882 --kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 1344556666665555444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.39 Score=52.43 Aligned_cols=125 Identities=10% Similarity=0.102 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC----CCCCH
Q 040435 1207 LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN----LKATA 1281 (1991)
Q Consensus 1207 i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~~pd~ 1281 (1991)
+.|...--..|..+....|+..+|...|++... |+-. |....-.+..+....++..+|...++++-+- -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 345555555556666666666666666665542 4433 3444455555555566666666666655431 1222
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
..-.+...+...|..+.|+.+++.++..-|+ +..-..-+..++++|+-+++..
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 2333455566666666666666666666663 3334455556666666555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.5 Score=54.37 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---CH----hHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISRK---NI----VSWSAMVAAYGM---NGLAHEALALVAEMKLGGLQPNAVTTLSVLS 1219 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~~---d~----~s~n~LI~ay~~---~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ 1219 (1991)
.|+-.|-...+++...++.+.+... ++ ..--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688889999999999998763 11 122233445566 7899999999999776666788888887776
Q ss_pred HHH---------hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHH---HHCc--cC---CC
Q 040435 1220 ACS---------HGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDI----AIDLI---NQMP--DN---LK 1278 (1991)
Q Consensus 1220 ac~---------~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~ee----A~~l~---~~m~--~~---~~ 1278 (1991)
.|- .....++|.+.|.+. +.+.|+..+--.++.++..+|...+ ..++. ..+. ++ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 652 123477888888755 4577876555555555666664322 22222 1110 11 33
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1279 ATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1279 pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
.+-..+.+++.++.-.|+.+.|.+++++++++.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 466788899999999999999999999999998765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=14 Score=45.23 Aligned_cols=282 Identities=17% Similarity=0.154 Sum_probs=177.1
Q ss_pred cCCHHHHHHHHHhcCC---CchhhhhHHHHhh--hhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhccChHHH
Q 040435 1057 CHLVELAWKLFNDVKK---PDVVLWSTMIAGF--TLCGRPREAIAVFQEMNQAQEKPNAI--TIINLLEACSVATELSSS 1129 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~---~d~~syn~LI~~y--~~~g~~eeAl~lf~~M~~~Gv~Pd~~--T~~~lL~a~a~~g~le~a 1129 (1991)
.|+-..|++.-.+..+ .|-...-.++.+- .-.|+.++|.+-|+.|... |... -+..|.-.--+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 5666666666554432 3333333333222 2368888888888888752 3222 223344444577888888
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHh--HHHHHHHHHHH---cCCHHHHHHHH
Q 040435 1130 KWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KNIV--SWSAMVAAYGM---NGLAHEALALV 1199 (1991)
Q Consensus 1130 ~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~--s~n~LI~ay~~---~G~~~eAl~lf 1199 (1991)
++.-+..-..-- .-.-...+++...+..|+++.|+++.+.-.. +++. .--.|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 777666554431 1234567889999999999999999986553 4442 22233332221 22455555555
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHC
Q 040435 1200 AEMKLGGLQPNAVT-TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGEL-----DIAIDLINQM 1273 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~T-~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~-----eeA~~l~~~m 1273 (1991)
.+..+ +.||-+- -.....++.+.|++.+|-.+++.+-+ .+|.+..+...+ +.|.|+. ..|.. ++.|
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~-L~sl 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKK-LESL 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHH-HHhc
Confidence 44443 6777653 33445678899999999999999875 678776665433 3455642 22222 3344
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC-CCchhHHHHHHHHHHcCCcccCcE
Q 040435 1274 PDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG-GLWVESSGTRLLAKERGVKVVAGN 1352 (1991)
Q Consensus 1274 ~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~-G~~~ea~~vr~~m~~~gi~k~~g~ 1352 (1991)
+ +.+.....++..+....|++..|...++.+...+|. .+.|.+|+.+-... |+ .-++|..|. ++++-...-
T Consensus 325 k---~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGD---qg~vR~wlA-qav~APrdP 396 (531)
T COG3898 325 K---PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGD---QGKVRQWLA-QAVKAPRDP 396 (531)
T ss_pred C---ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCc---hHHHHHHHH-HHhcCCCCC
Confidence 4 235667777788888999999999999999999996 45688888886554 65 446777775 466655555
Q ss_pred EEEEEc
Q 040435 1353 SLVHVD 1358 (1991)
Q Consensus 1353 s~i~v~ 1358 (1991)
.|.--+
T Consensus 397 aW~adg 402 (531)
T COG3898 397 AWTADG 402 (531)
T ss_pred cccccC
Confidence 565444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.76 Score=52.77 Aligned_cols=240 Identities=13% Similarity=0.016 Sum_probs=161.9
Q ss_pred hhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHh-ccc---hhhHHHHHHHHHHhCCCCchH
Q 040435 667 WSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACS-NLS---YIHGRLVHACLVKQGYESFTS 742 (1991)
Q Consensus 667 d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~-~~~---~~~a~~i~~~~lk~g~~~d~~ 742 (1991)
...|++-|..-...+.+-+.+++|..-+....... .||-. |-.--..+. +.| .-..+-+|+.+...- + .
T Consensus 65 t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD--~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l--g--n 137 (366)
T KOG2796|consen 65 TTDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLD--QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL--G--N 137 (366)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC--Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc--C--C
Confidence 34677888888888888888888887766655432 11211 111111111 112 234667888776542 1 2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhhcC--CCC--------hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040435 743 IGNALMDFYMKWRFPDSAVAVFDDCI--CRD--------SVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVL 812 (1991)
Q Consensus 743 ~~n~Li~~y~k~G~~~~A~~lfd~m~--~~d--------~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~ 812 (1991)
-+++|+..|.-...+++-.+.|+.-. +.. ...-+.++..+...|.+.-.+.++.+.++...+.+......
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 36788888876666666666665432 222 23346788888888999999999999999777778888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh------CCHHHHHHHHHhcCCC---CHHHHHHHHHHHH
Q 040435 813 VIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD------ADMECARKLFDEMCER---DVISWSVMIGGYV 883 (1991)
Q Consensus 813 lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak------g~~e~A~~vf~~m~~~---d~~syn~LI~a~~ 883 (1991)
+.+.-...||.+.|+..++.+.+..-..+....+.++.+-.+ .++..|.+.|+++++. |.+.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 888889999999999999988876555555555555544332 4789999999988664 4555555444455
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 040435 884 QSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLK 916 (1991)
Q Consensus 884 ~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~ 916 (1991)
-.|+..+|++....|.. ..|...+-++++-
T Consensus 298 Ylg~l~DAiK~~e~~~~---~~P~~~l~es~~~ 327 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ---QDPRHYLHESVLF 327 (366)
T ss_pred HHHHHHHHHHHHHHHhc---cCCccchhhhHHH
Confidence 56899999999999986 4566665554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.078 Score=51.58 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQ-PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~-Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA 1266 (1991)
.|++++|+.+++++.+.... |+...+..+..++.+.|++++|.++++. .+ ..|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555666666665543211 1223333345555555666666555554 11 2222 22222335555555555555
Q ss_pred HHHHHH
Q 040435 1267 IDLINQ 1272 (1991)
Q Consensus 1267 ~~l~~~ 1272 (1991)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=2 Score=52.29 Aligned_cols=124 Identities=10% Similarity=0.124 Sum_probs=56.8
Q ss_pred HHHHHHhc-CCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH-HH
Q 040435 1151 VVDMYAKC-GAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-----PNAV-TT 1214 (1991)
Q Consensus 1151 LI~~y~k~-G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-----Pd~~-T~ 1214 (1991)
+..+|.+. |+++.|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-.. .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34445554 566666665554432 11 123445556666677777777777766543221 1111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCC--HHHHHHHHHHHHH--cCCHHHHHHHHHHCc
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQD-HGVEPA--LEHYSCMVDMLAR--AGELDIAIDLINQMP 1274 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~-~gi~P~--~~~y~~Li~~l~r--~G~~eeA~~l~~~m~ 1274 (1991)
...+-.+...|+...|.+.++..... .++..+ ......|++++-. ...+++|+.-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 22223444566666666666665321 112222 1233344444432 234556666666554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.46 E-value=18 Score=45.21 Aligned_cols=445 Identities=11% Similarity=0.026 Sum_probs=217.7
Q ss_pred cCChHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHhhCCHHHHHHHHHhcCCC-CHHHHHHHHHHH--HHcCChHHH
Q 040435 820 LGAYYEGLQVHGYIIRSGLWA-----VHSVQNSVLSMYVDADMECARKLFDEMCER-DVISWSVMIGGY--VQSAEAFSG 891 (1991)
Q Consensus 820 ~g~~~~a~~l~~~~~k~G~~~-----d~~v~naLi~~yakg~~e~A~~vf~~m~~~-d~~syn~LI~a~--~~~G~~~eA 891 (1991)
.++..++..+|..+.+..-.. .....+.++++|--.+++..........+. ....|-.+..+. -+.+.+.+|
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ka 98 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKA 98 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHH
Confidence 344555555555444332111 123345566666655554444444433211 012233333322 345666666
Q ss_pred HHHHHHHHhCC-CC------------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHH
Q 040435 892 LRLFRQMVSGF-KN------------EPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLG----CDLFVGNSLIDMYA 954 (1991)
Q Consensus 892 l~lf~~M~~~~-gv------------~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~----pd~~v~naLI~~y~ 954 (1991)
++.+..-..+- +- -+|..-=+..+..+...|.+.+|+.++..++..=++ -+..+|+.++-+++
T Consensus 99 l~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 99 LQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 66665544320 01 112222234555667788888888888777665443 67888888888887
Q ss_pred hcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC--ChhhHHHHH
Q 040435 955 KCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFV--HPMECKSVH 1032 (1991)
Q Consensus 955 k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g--~~~~a~~i~ 1032 (1991)
+.=-++. -+.+...=..-|--||..|.+.=..-+ .-.-+.+.|....+..++....-.. .+.--.+++
T Consensus 179 rSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 179 RSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 6532221 112221112235555555544311111 1111123344444444444333211 112223333
Q ss_pred HHHHHhcCCCc-hhhhhhHHHHHHhcCCHHHHHHHHHhcC--------CCchhhhhHHHHhhhhcCChHHHHHHHHHHHH
Q 040435 1033 CVILRRAFESN-ELVLNSLIDGYSKCHLVELAWKLFNDVK--------KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQ 1103 (1991)
Q Consensus 1033 ~~~~~~g~~~d-~~v~naLI~~y~k~G~l~~A~~lf~~m~--------~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~ 1103 (1991)
..-.+.-+.|+ .-+...|+..+.+ +.+++..+-+.+. +.=+.++..++...++.++..+|-+.+.-+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333333343 2233344444444 3344433333322 23455777888888888888888877765543
Q ss_pred CCCCCCHHHHHHH-------HHHHh-h---ccChHHHHHHHHHHHHhccccchhHHHHHH---HHHHhcCC-HHHHHHHH
Q 040435 1104 AQEKPNAITIINL-------LEACS-V---ATELSSSKWAHGIAIRRCLAEEVAVGTAVV---DMYAKCGA-IEASRKAF 1168 (1991)
Q Consensus 1104 ~Gv~Pd~~T~~~l-------L~a~a-~---~g~le~a~~i~~~~~k~g~~~d~~v~naLI---~~y~k~G~-~e~A~~lf 1168 (1991)
+.|+...-.-+ -+..+ . ..++..-..++..+....++... ....|+ .-|-+.|. -++|.+++
T Consensus 327 --ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 --LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred --cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 23433211111 11111 0 11111112223333222222111 111122 22344554 77888888
Q ss_pred HhccC---CCHhHHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHH--HHhcCCHHHHHH
Q 040435 1169 DQISR---KNIVSWSAMV----AAYGMN---GLAHEALALVAEMKLGGLQPNAVT----TLSVLSA--CSHGGLVEEGLS 1232 (1991)
Q Consensus 1169 ~~m~~---~d~~s~n~LI----~ay~~~---G~~~eAl~lf~eM~~~Gi~Pd~~T----~~~LL~a--c~~~G~~e~A~~ 1232 (1991)
+.+.+ -|..+-|... .+|.+. ..+.+-+.+-+-..+.|+.|-.+. -+.|-.| +...|++.++.-
T Consensus 404 k~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 404 KLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 87764 3554444332 233332 123344444444556787774432 3333333 346788888887
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH
Q 040435 1233 FFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA 1286 (1991)
Q Consensus 1233 i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~ 1286 (1991)
+-.-+.+ +.|++.+|..+.-.+.-..+++||.+++.++| |+..+|++
T Consensus 484 ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP----~n~~~~ds 530 (549)
T PF07079_consen 484 YSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP----PNERMRDS 530 (549)
T ss_pred HHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC----CchhhHHH
Confidence 7666644 89999999998888888899999999999886 45555554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.62 Score=58.93 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=86.1
Q ss_pred CCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh--ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCHhH
Q 040435 1105 QEKPNAITIINLLEACSVATELSSSKWAHGIAIRR--CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----KNIVS 1178 (1991)
Q Consensus 1105 Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~--g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----~d~~s 1178 (1991)
+...+...+..+++.+....+++.++.++-..... ....-..+..++|..|.+.|..+.|..++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557777777888888877777777766665554 2222234445788888888888888877765443 77888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777777777777777777655
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.26 Score=55.72 Aligned_cols=97 Identities=16% Similarity=0.299 Sum_probs=74.8
Q ss_pred HHHHHhc--cCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------
Q 040435 1165 RKAFDQI--SRKNIVSWSAMVAAYGMN-----GLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG------------- 1224 (1991)
Q Consensus 1165 ~~lf~~m--~~~d~~s~n~LI~ay~~~-----G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~------------- 1224 (1991)
...|+.. ..++-.+|..+|..|.+. |..+=...-++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556555 457777888888887754 55666666788888889999999999998876432
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC
Q 040435 1225 ---GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1225 ---G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~ 1262 (1991)
.+.+-|++++++| +.+|+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2346789999999 678999999999999999988775
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.012 Score=65.46 Aligned_cols=97 Identities=25% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHhhCcCCCCCCCCCHHHHHHHHHHHHh-hccc-cc----CChhHHhhHhhhccccccCcCCCcceEEEeecccCCcc
Q 040435 1442 AKIESLCPSISGNVCCTETQFETLRAQVQQ-AIPF-LV----GCPACLRNFLNLFCELSCSPNQSQFINVTSVSEVNGNL 1515 (1991)
Q Consensus 1442 ~~l~~~Cp~~~~~~CC~~~q~~~l~~~~~~-~~~~-~~----~CpaC~~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~ 1515 (1991)
..|...|..|....||+.++...+...... +..+ .. -=|.|..-|.++.|-+-|||++..|.. .....
T Consensus 16 ~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~~~~~------~~~~~ 89 (167)
T PF03024_consen 16 PDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAGHWQA------EDRKT 89 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccccccc------CCcCC
Confidence 356668999999999999999999888763 2221 11 247999999999999999999999921 11122
Q ss_pred eEEEEEEEEchhhhHHHhhcCcCCCCCCCCh
Q 040435 1516 TVDGIDYYVTSTFGEELYNSCKDVKFGTMNT 1546 (1991)
Q Consensus 1516 ~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~ 1546 (1991)
.+..+- |=++|=+.+|+.||+..+...+-
T Consensus 90 ~~~~~P--LC~~~Cd~wf~aCk~d~tc~~~~ 118 (167)
T PF03024_consen 90 RIRGVP--LCASFCDDWFEACKDDYTCGSNW 118 (167)
T ss_dssp -------------------------------
T ss_pred ccCCCC--cCHHHHHHHHHHhhhHHhccCcc
Confidence 355455 88999999999999998766554
|
Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B. |
| >PLN03182 xyloglucan 6-xylosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.44 Score=58.38 Aligned_cols=107 Identities=15% Similarity=0.229 Sum_probs=63.8
Q ss_pred CCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCC--eeEeeccchhhhccccccccCCCccccCCC
Q 040435 476 PKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGM--VNGAVETCKESFHRFDKYLNFSNPLISENF 553 (1991)
Q Consensus 476 ~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~--~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~ 553 (1991)
+..|++..++|=.+-. .|+.+.+.|||+|.|+.+--- .+.+..+ ..-+++- +...+ ..
T Consensus 179 p~~WaKlpaLR~aM~~-~PeaEWiWWLDsDALImNmsf---elPlery~~~NlVihg-------~~~~l---------~~ 238 (429)
T PLN03182 179 AGFWAKLPLLRKLMLA-HPEVEWIWWMDSDALFTDMTF---EIPLEKYEGYNLVIHG-------WDELV---------YD 238 (429)
T ss_pred CcchhHHHHHHHHHHH-CCCceEEEEecCCceeecCCC---CCCHhHcCCcCeeecc-------chhhh---------ee
Confidence 5678888888766543 688999999999999987322 2232211 0111110 00000 11
Q ss_pred CCCCcccccceeEeehHHHHHhhHHHHHHHHHHh-----------------chhccccccCCCCchhhhh
Q 040435 554 SPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDA-----------------NEDRTLWKLGTLPPGLITF 606 (1991)
Q Consensus 554 ~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~-----------------~~~~~~~~~~dqd~~n~~f 606 (1991)
..+-.|.|+|++||....|--.-+.. |... ..++..+...||.++-.++
T Consensus 239 ~kdW~GLNtGsFLIRNcqWSldlLDa----Wa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl 304 (429)
T PLN03182 239 QKSWIGLNTGSFLIRNCQWSLDLLDA----WAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLL 304 (429)
T ss_pred ccccCccceeeEEEEcCHHHHHHHHH----HHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHH
Confidence 12335899999999999998744432 3222 2244456788998875543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.45 Score=51.84 Aligned_cols=91 Identities=10% Similarity=-0.054 Sum_probs=77.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCch
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWV 1332 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ 1332 (1991)
...-+-..|++++|..+|.-+..-..-+..-|..|..+|...++++.|...|..+..++++||.+++..+..|...|+-+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445678999999999987754334577789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 040435 1333 ESSGTRLLAKE 1343 (1991)
Q Consensus 1333 ea~~vr~~m~~ 1343 (1991)
.|........+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99887765544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.21 E-value=11 Score=41.87 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQIS-----RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLS 1219 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~-----~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ 1219 (1991)
..........+...+.+..+...+.... ......+..+...+...+...++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444555666666677776666666543 23344555566666666777777777777765433331 11222222
Q ss_pred -HHHhcCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC-CHHHHHHHHHHHHH
Q 040435 1220 -ACSHGGLVEEGLSFFNSMVQDHGVEP----ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA-TASAWGALLSACRS 1293 (1991)
Q Consensus 1220 -ac~~~G~~e~A~~i~~~M~~~~gi~P----~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p-d~~~~~~Ll~a~~~ 1293 (1991)
++...|.++.|...+..... ..| ....+......+...++.++|...+.++....+. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56677777777777777633 333 2333444444466677777887777777654344 35677777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1294 YGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.++.+.|...+.++++..|.....+..++..+...|.++++.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 7777888888888877777755556666666666666666665444
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.6 Score=51.24 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG-GLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDML 1257 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~-G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l 1257 (1991)
+..|...|++..|-..+.++- ..|... |++++|.++|++..+-+...-. ...+.-+..++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 445555555555544444432 233344 5666666666655443222222 23445556667
Q ss_pred HHcCCHHHHHHHHHHCccC------CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1258 ARAGELDIAIDLINQMPDN------LKATAS-AWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~------~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.+.|++++|.+++++.... .+.+.. .+-..+-.+...||...|.+.+++..+.+|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7777777777777665331 011111 1122222334456777777777777666664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.5 Score=59.72 Aligned_cols=120 Identities=16% Similarity=0.075 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC----Cchhh
Q 040435 1004 VNEVDEITLVNILQICKCFVHPMECKSVHCVILRR--AFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK----PDVVL 1077 (1991)
Q Consensus 1004 Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~--g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~----~d~~s 1077 (1991)
+...+...+..++..+....+++.++.++-..... ....-..+..++|+.|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777777888888888888777776665554 2222233456888888888888888888876554 88888
Q ss_pred hhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 040435 1078 WSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVA 1123 (1991)
Q Consensus 1078 yn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~ 1123 (1991)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888998999999988988888888887778888887777777765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=2 Score=49.56 Aligned_cols=171 Identities=5% Similarity=-0.128 Sum_probs=117.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC----------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR----------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSV 1217 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~----------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L 1217 (1991)
+++|+..|.-..-+++-...|+.-.. +-...-++|+..+.-+|.+.-.+.++++.++..-+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566666555555555555543332 12234556777777778888889999999987656677777788
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGV----EPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi----~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
.+.-...|+++.|..+|+...+..|. .-..-....+...|.-+.++.+|...+.+++...+.++..-+.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999977554332 22222333334456667889999999999987545566666555555556
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1294 YGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
.|+...|.+..+.+++..|.....-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 7899999999999999999764433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.7 Score=46.93 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHhHHhcCCCCCHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPNAVTTLSVLSACSHGGL--------VEEGLSFFNSMVQDHGVEPALE 1248 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd~~T~~~LL~ac~~~G~--------~e~A~~i~~~M~~~~gi~P~~~ 1248 (1991)
+-...|..+...+++.....+|+.+++.|+ -|+..+|+.+|.+-.+... +-+.+.+++.|+. .+++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 445566666777999999999999999999 8999999999988765432 3456777888875 47888888
Q ss_pred HHHHHHHHHHH
Q 040435 1249 HYSCMVDMLAR 1259 (1991)
Q Consensus 1249 ~y~~Li~~l~r 1259 (1991)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.49 Score=48.00 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHhCCCCchHH
Q 040435 774 SWNIMIQGHLDHGTLGEGLWWFYKARVAGF-EPNNSILVLVIQACRCLG--------AYYEGLQVHGYIIRSGLWAVHSV 844 (1991)
Q Consensus 774 s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi-~Pd~~ty~~lL~a~~~~g--------~~~~a~~l~~~~~k~G~~~d~~v 844 (1991)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|++.++.. .+-....++..++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667777999999999999999999 899999999998887653 12334566677777777777777
Q ss_pred HHHHHHHHhhC
Q 040435 845 QNSVLSMYVDA 855 (1991)
Q Consensus 845 ~naLi~~yakg 855 (1991)
|+.++..+.+|
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 77777666554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.36 Score=58.52 Aligned_cols=131 Identities=9% Similarity=0.006 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1212 VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR-AGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r-~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
.+|..++..+.+.+.++.|+.+|.+..+. -.-+...|.....+-.+ .++.+.|.++|+...+.++.+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889998998999999999999643 22234556666666555 4566669999999988778899999999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNS---AGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~---~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
+...|+.+.|..++++++..-|.+. ..|......=...|..+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766654 35666677777789999998988877654
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.52 Score=53.38 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHH
Q 040435 805 PNNSILVLVIQACR-----CLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMI 879 (1991)
Q Consensus 805 Pd~~ty~~lL~a~~-----~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI 879 (1991)
-|..+|..++..+. +.|.++.....+..|.+.|+..|..+|+.||+.+=+|.+- -..+|+.+-.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc-cccHHHHHhc----------
Confidence 45556666665554 3467788888888899999999999999999988776433 2233333210
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHH
Q 040435 880 GGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDL-TMGRMVHGLVIY 936 (1991)
Q Consensus 880 ~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~-~~a~~l~~~m~k 936 (1991)
-| -.+-+-|++++++|... |+.||..|+..|+..+++.+.. ...+++.-+|.+
T Consensus 114 -hy--p~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 114 -HY--PRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred -cC--cHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11 12456789999999987 9999999999999999877653 345555555554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.14 Score=48.09 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=49.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
...+...++++.|..+++++++++|+++..+...+.+|...|++++|.......-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999998766443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=5.8 Score=47.07 Aligned_cols=171 Identities=10% Similarity=0.004 Sum_probs=103.8
Q ss_pred HHHHhcCCHHHHHHHHHhccC--CCH-hH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c
Q 040435 1153 DMYAKCGAIEASRKAFDQISR--KNI-VS---WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH--G 1224 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~--~d~-~s---~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~--~ 1224 (1991)
..+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|+..|++..+....-..+-+...+.+.++ .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 344567889999998888865 322 11 223556777888899999999888874322222334444444332 1
Q ss_pred C---------------C---HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH
Q 040435 1225 G---------------L---VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA 1286 (1991)
Q Consensus 1225 G---------------~---~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~ 1286 (1991)
+ + ..+|.+.|+.+++ .|-...-..+|...+..+..++. ..-+ .
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la--~~e~-~ 180 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLA--KYEL-S 180 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHH--HHHH-H
Confidence 0 1 1233344444443 33333334555554444432100 0111 3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCC---chHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQN---SAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~---~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
...-|.+.|.+.-|..-++.+++.-|+. +.+...+..+|...|+-++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3444778899999999999999988875 4556778899999999999998877654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.12 Score=47.69 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
...|+++.|...++++++.+|+++.....++.+|...|++++|..+...+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999998877443
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=93.62 E-value=1.3 Score=46.34 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=68.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 040435 1182 MVAAYGMNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLA 1258 (1991)
Q Consensus 1182 LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~ 1258 (1991)
+..++-..|+.++|+.+|++....|..... ..+..+-+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876653 3566777888999999999999998877532211 1222333445778
Q ss_pred HcCCHHHHHHHHHHCc
Q 040435 1259 RAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~ 1274 (1991)
..|+.+||++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8999999998876553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.58 E-value=1 Score=54.97 Aligned_cols=152 Identities=11% Similarity=0.085 Sum_probs=98.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhHHhcCCCCCHH-------------H
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLS--ACSHGGLVEEGLSFFNSMVQDHGVEPALE-------------H 1249 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~--ac~~~G~~e~A~~i~~~M~~~~gi~P~~~-------------~ 1249 (1991)
++...|++++|.+.--..++.. +. ..+..+++ ++-..++.+.|...|++.+. +.|+-. .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 4555666666666555544321 11 11122222 22345566666666665543 444421 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCcc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPD----NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~----~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+..=.+...+.|++.+|.+.+.+... +.++++..|.....+..+.|+.++|+.--+++++++|.-.-+|..-++.|
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 22223456678899999999888754 35666777877777888899999999999999999998888888889999
Q ss_pred HhCCCchhHHH-HHHHHH
Q 040435 1326 AAGGLWVESSG-TRLLAK 1342 (1991)
Q Consensus 1326 a~~G~~~ea~~-vr~~m~ 1342 (1991)
...++|++|.+ +.+.|+
T Consensus 332 l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 99999999765 334443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.53 Score=49.16 Aligned_cols=84 Identities=18% Similarity=-0.011 Sum_probs=53.4
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CchHHHHHHHHHHh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKAT---ASAWGALLSACRSYGNTELGAGATSRILELEAQ---NSAGYLLASSMYAA 1327 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd---~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~---~~~~yvlL~~lya~ 1327 (1991)
..++-..|+.++|+.++++......++ ...+-.+.++++..|+.++|..++++.++..|+ +....++++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 345556667777777776665421111 235556666777777777777777777776666 55666666777777
Q ss_pred CCCchhHHHH
Q 040435 1328 GGLWVESSGT 1337 (1991)
Q Consensus 1328 ~G~~~ea~~v 1337 (1991)
.|++++|..+
T Consensus 88 ~gr~~eAl~~ 97 (120)
T PF12688_consen 88 LGRPKEALEW 97 (120)
T ss_pred CCCHHHHHHH
Confidence 7777776653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=1.1 Score=48.80 Aligned_cols=86 Identities=8% Similarity=-0.037 Sum_probs=38.7
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
..|++++|.++|+-+.. +.|. ..-|-.|.-.+-..|++++|++.+..+....+.|+..+-.+..++...|+.+.|+
T Consensus 47 ~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 47 EVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444432 3332 2333444444444444444444444443322334444444444445555555555
Q ss_pred HHHHHHHhcC
Q 040435 1302 GATSRILELE 1311 (1991)
Q Consensus 1302 ~~~e~llel~ 1311 (1991)
+.|+.+++..
T Consensus 124 ~aF~~Ai~~~ 133 (157)
T PRK15363 124 KALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHh
Confidence 5555444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.13 Score=43.32 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASS 1323 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ 1323 (1991)
.+|..|..++...|+.++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 478889999999999999999999999999999998887764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.9 Score=49.15 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=72.8
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEP--ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P--~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
....|+.+.+.+.++.+..-+.-.+ +... ..........++++- ..+...++..+...|+.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY------LDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCHH
Confidence 3456777888887777765443211 1111 122333333444332 246677888888999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH-----HHHcCCcccC
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL-----AKERGVKVVA 1350 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~-----m~~~gi~k~~ 1350 (1991)
.|...+++++..+|-+...|..+..+|...|+..+|.++... .++.|+.|.|
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999986543 3467887654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.59 Score=55.90 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC---CHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA---TASAWGALL 1288 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p---d~~~~~~Ll 1288 (1991)
.|...+......|++++|...|+.+++.+--.+ ....+--+..+|...|++++|...|+.+....+. ...+|..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 355544444556788888888888776432221 1245666777788888888888888777653222 244555556
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
..+...|+.+.|...++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6666778888888888888888887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.92 E-value=7.4 Score=49.81 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--CchhhhhHHHHhhhhcC
Q 040435 1012 LVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--PDVVLWSTMIAGFTLCG 1089 (1991)
Q Consensus 1012 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d~~syn~LI~~y~~~g 1089 (1991)
...+-.-+.+...+..|.++|..|-.. .+++.+....+++++|..+-++.++ +|+ |-.-..-++...
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV--y~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV--YMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc--cchHHHHhhhhh
Confidence 333333344455555666666554322 3567778888889999888888887 343 333344455666
Q ss_pred ChHHHHHHHH
Q 040435 1090 RPREAIAVFQ 1099 (1991)
Q Consensus 1090 ~~eeAl~lf~ 1099 (1991)
+++||.+.|.
T Consensus 819 rFeEAqkAfh 828 (1081)
T KOG1538|consen 819 RFEEAQKAFH 828 (1081)
T ss_pred hHHHHHHHHH
Confidence 6666655443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=92.91 E-value=9.7 Score=45.19 Aligned_cols=54 Identities=9% Similarity=-0.092 Sum_probs=37.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--Cchh-h---hhHHHHhhhhcCChHHHHHHHHHHHHC
Q 040435 1051 IDGYSKCHLVELAWKLFNDVKK--PDVV-L---WSTMIAGFTLCGRPREAIAVFQEMNQA 1104 (1991)
Q Consensus 1051 I~~y~k~G~l~~A~~lf~~m~~--~d~~-s---yn~LI~~y~~~g~~eeAl~lf~~M~~~ 1104 (1991)
...+.+.|++++|.+.|+.+.. |+.. . .-.+..+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445567888888888888865 3321 1 123456777888888888888888764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.97 Score=54.06 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcC
Q 040435 1187 GMNGLAHEALALVAEMKLGGLQPNA----VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~Gi~Pd~----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G 1261 (1991)
.+.|++++|+..|+.+.+. -|+. ..+.-+..++...|++++|...|+.+++.+.-.|. ...+-.+...+.+.|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3445555555555555442 2322 23333444445555555555555555443322221 233333444444555
Q ss_pred CHHHHHHHHHHCcc
Q 040435 1262 ELDIAIDLINQMPD 1275 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~ 1275 (1991)
+.++|.+.+++..+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=20 Score=39.82 Aligned_cols=197 Identities=17% Similarity=0.073 Sum_probs=130.2
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHh-ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-HhHHHHHHH-HHH
Q 040435 1113 IINLLEACSVATELSSSKWAHGIAIRR-CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-IVSWSAMVA-AYG 1187 (1991)
Q Consensus 1113 ~~~lL~a~a~~g~le~a~~i~~~~~k~-g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~~s~n~LI~-ay~ 1187 (1991)
+......+...+.+..+.......... ........+..+...+...+....+...+..... ++ ...+..... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333334444444444444444433332 2223334445555566666777788888777664 22 122333333 688
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 040435 1188 MNGLAHEALALVAEMKLGGLQP----NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~P----d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~ 1262 (1991)
..|+.++|...+++... ..| ....+......+...+..+++...+..+.+. ... ....+..+...+...|.
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 89999999999999865 333 3334444444567788999999999988763 222 36778888888999999
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
+++|...+.......+.....+..+...+...++.+.+...+.+.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999887643333566677777777777799999999999999887
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.46 Score=59.50 Aligned_cols=63 Identities=16% Similarity=-0.046 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch---HHHHHHHHHHhCCCchhHHHHHH
Q 040435 1277 LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA---GYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1277 ~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~---~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.+.+...|..+..+|...|++++|...++++++++|+++. +|+.++.+|+..|+.++|.....
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456778888888888888888888888888888888874 48888888888888888886443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.01 E-value=47 Score=44.20 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHH
Q 040435 1208 QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGAL 1287 (1991)
Q Consensus 1208 ~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~L 1287 (1991)
.-...|.+--+.-+...|...+|.++-.+. --|+...|-.-+.+|+..+++++-+++-++++. +.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F-----kipdKr~~wLk~~aLa~~~kweeLekfAkskks-----PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF-----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS-----PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc-----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-----CCCchhH
Confidence 344445566666777888888888877655 247777888888888999999988888887762 3456667
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..+|.+.|+..+|.+.+-++-. +.-...+|...|++.+|+.+-.
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 8889999998888876655421 1256778888888888877654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=6.5 Score=49.76 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=104.4
Q ss_pred hHH--HHHHHHHHHcC-----CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHhH
Q 040435 1177 VSW--SAMVAAYGMNG-----LAHEALALVAEMK-LGGLQPNAVTTLSVLSACS----------HGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1177 ~s~--n~LI~ay~~~G-----~~~eAl~lf~eM~-~~Gi~Pd~~T~~~LL~ac~----------~~G~~e~A~~i~~~M~ 1238 (1991)
..| ..++.|....- ..+.|+.+|.+.. .+.+.|+-..-...+.-|. ......+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55665554421 3567888888887 2235666443222332221 1223556667766665
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1239 QDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1239 ~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
+ +.| |......+..+++-.|+++.|..+|++...-.+..+.+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 5 566 566667777777778889999999998877444557788888888888999999999999999999987665
Q ss_pred HHHHHH--HHHhCCCchhHHHHHH
Q 040435 1318 YLLASS--MYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1318 yvlL~~--lya~~G~~~ea~~vr~ 1339 (1991)
-++-.. +|+..+. +++.++..
T Consensus 409 ~~~~~~~~~~~~~~~-~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNPL-KNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCch-hhhHHHHh
Confidence 554433 5666554 55555543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.89 E-value=31 Score=48.06 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 040435 1058 HLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAI 1137 (1991)
Q Consensus 1058 G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~ 1137 (1991)
+++++|..-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+.-+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 45556655555543 223444444444566666666664 67888887777776642 11
Q ss_pred HhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HH
Q 040435 1138 RRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVT--TL 1215 (1991)
Q Consensus 1138 k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T--~~ 1215 (1991)
+. ..++--.-+|.+||++++|.+. |...|++++|+.+-.+|.. .-|... -.
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 11 1122334589999999999664 4567889999998888752 223322 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1216 SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1216 ~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
.|.+-+...+..-+|-++..+... . +.--+..|+++..+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 566777788888888777765533 2 3345667788888888888877664
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.12 E-value=1.3 Score=45.82 Aligned_cols=84 Identities=25% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhCCCc
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS----AGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~----~~yvlL~~lya~~G~~ 1331 (1991)
+++..|++++|++.|.+...-.+..+++|+.-..+++.+|+.+.|..-+++++++..+.. .+|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455566666666666665543344566666666666666666666666666666543321 2355666666666666
Q ss_pred hhHHHHHH
Q 040435 1332 VESSGTRL 1339 (1991)
Q Consensus 1332 ~ea~~vr~ 1339 (1991)
++|..=..
T Consensus 132 d~AR~DFe 139 (175)
T KOG4555|consen 132 DAARADFE 139 (175)
T ss_pred HHHHHhHH
Confidence 55554333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=2 Score=54.06 Aligned_cols=124 Identities=8% Similarity=0.022 Sum_probs=96.1
Q ss_pred HHHHHHHHhc--C---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHCccCCCC
Q 040435 1215 LSVLSACSHG--G---LVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLAR---------AGELDIAIDLINQMPDNLKA 1279 (1991)
Q Consensus 1215 ~~LL~ac~~~--G---~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r---------~G~~eeA~~l~~~m~~~~~p 1279 (1991)
...+.+..+. + ..++|..+|.+.+....++|+ ...|..+...+.. .....+|.++.++..+..+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455555442 2 457788899988754458886 4555555443322 23456788888888876677
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
|+.+...+..+....|+.+.|...++++++++|+.+.++...+.+...+|+.++|...-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999998899999999999999999999999999999999999999999987643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.63 E-value=22 Score=39.43 Aligned_cols=127 Identities=12% Similarity=-0.006 Sum_probs=89.4
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 040435 1174 KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCM 1253 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~L 1253 (1991)
|++..--.|..++...|+..||...|++...--..-|......+..+....++...|...++.+.+..--.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 56666667888899999999999999998764456677888888888889999999999998876532111123455566
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
...|...|+.++|+.-|+.... .-|+...-.-...-..++|+..++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~-~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS-YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 7788889999999988888765 3445443333333345566544444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.8 Score=45.65 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHc
Q 040435 1242 GVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN--LKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1242 gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~ 1294 (1991)
.+.|+.....+++.+|+..|++..|+++++...+. ++-+...|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777777777766542 444567777777755443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=90.11 E-value=2.5 Score=44.62 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 040435 1206 GLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR 1259 (1991)
Q Consensus 1206 Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r 1259 (1991)
...|+..+..+++.+++..|++..|+++.+...+.|++.-+...|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999988888899888864443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.88 E-value=59 Score=40.16 Aligned_cols=296 Identities=13% Similarity=-0.001 Sum_probs=155.0
Q ss_pred HHHHHHHHHH--hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHhCCCCchH---HHH
Q 040435 774 SWNIMIQGHL--DHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACR--CLGAYYEGLQVHGYIIRSGLWAVHS---VQN 846 (1991)
Q Consensus 774 s~n~LI~a~~--~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~--~~g~~~~a~~l~~~~~k~G~~~d~~---v~n 846 (1991)
-|.+|-.|+. ..|+-..|.++-.+-.. -+.-|...+..||.+-+ -.|+.+.|++-|+.|+.. |... +..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 4556655554 35566666555544321 13456666666766544 447888888888877642 1111 111
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHc-
Q 040435 847 SVLSMYVDADMECARKLFDEMCE--R-DVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQ--SLVSVLKACTN- 920 (1991)
Q Consensus 847 aLi~~yakg~~e~A~~vf~~m~~--~-d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~--T~~~lL~a~~~- 920 (1991)
..|..-..|+.+.|++.-+...+ | =.-.|.+.+...+..|+++.|+++++.-+...-+.++.. .-..||.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 11111112777777776665532 2 235677788888888888888888887765444555543 22333333221
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040435 921 --LRDLTMGRMVHGLVIYRGLGCDLFV-GNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLL 997 (1991)
Q Consensus 921 --~g~~~~a~~l~~~m~k~g~~pd~~v-~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf 997 (1991)
..+...++..-.+..| +.||..- .-.-...|.+.|++.++-.+++.+=+.....--..+..+.+.|+ .++.-+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHH
Confidence 1233344443333333 3444221 12233567788888888888777643222111122223344444 333333
Q ss_pred HHHhc-CCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHh-cCCHHHHHHHHHhcCC-C
Q 040435 998 YSMGK-GVNEVD-EITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSK-CHLVELAWKLFNDVKK-P 1073 (1991)
Q Consensus 998 ~~M~~-~Gi~Pd-~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k-~G~l~~A~~lf~~m~~-~ 1073 (1991)
++... ...+|| ......+..+....|++..++.--+.+.+ ..|....|-.|.+.-.- .|+-.+++..+-+-.+ |
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 33211 123444 33445555666666777666655444443 34566666666665543 4888888777766543 3
Q ss_pred chhhhh
Q 040435 1074 DVVLWS 1079 (1991)
Q Consensus 1074 d~~syn 1079 (1991)
-...|+
T Consensus 394 rdPaW~ 399 (531)
T COG3898 394 RDPAWT 399 (531)
T ss_pred CCCccc
Confidence 333443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.71 E-value=1.7 Score=50.54 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=84.9
Q ss_pred HHHHHHHHhcc--CCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--------
Q 040435 1162 EASRKAFDQIS--RKNIVSWSAMVAAYGMN-----GLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGL-------- 1226 (1991)
Q Consensus 1162 e~A~~lf~~m~--~~d~~s~n~LI~ay~~~-----G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~-------- 1226 (1991)
-..+..|.... ++|-.+|-+++..+..+ +..+=....++.|.+-|+.-|..+|..||..+-+...
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677776 67888999999888765 4566666678899999999999999999987654432
Q ss_pred --------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHCc
Q 040435 1227 --------VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGEL-DIAIDLINQMP 1274 (1991)
Q Consensus 1227 --------~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~-eeA~~l~~~m~ 1274 (1991)
-+-|+.++++| +.+|+.||.++-..|+.+++|.|.. .+..+++--|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 24478899999 6789999999999999999998853 34444444444
|
|
| >PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog | Back alignment and domain information |
|---|
Probab=89.68 E-value=20 Score=50.33 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=73.6
Q ss_pred HHHHHHHH-HhchhhhccchHHHHH--HHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEE
Q 040435 1719 GYMLSFYR-TYGRWVAANPAFVLCM--SLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLI 1795 (1991)
Q Consensus 1719 ~~l~~~F~-~~G~~va~~P~~~i~~--~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvi 1795 (1991)
..+.++|. .||.++.+.|..++++ -++..++...|...++..-||.+| .|.+|...+=-+..+++|.+.+=.-.|+
T Consensus 418 ~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld~~~l-~p~dSyl~~~~~~~e~yf~~~g~~v~V~ 496 (798)
T PF02460_consen 418 PSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLDPEKL-FPDDSYLQKFFRLQEKYFFSYGPPVYVV 496 (798)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCChhhc-cCCCChhHHHHHHHHHHhhccCceEEEE
Confidence 34555555 5899999887665433 334444555789999999999855 7889998887777778887776556666
Q ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccc
Q 040435 1796 LATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVR 1830 (1991)
Q Consensus 1796 i~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~ 1830 (1991)
+.. .+++-+++..+++.++.+.+.++.
T Consensus 497 v~~--------~~d~~~~~~~~~l~~lv~~fe~~~ 523 (798)
T PF02460_consen 497 VNN--------PPDYSDPENQDRLNSLVQEFENSP 523 (798)
T ss_pred ecC--------CCCccchHHHHHHHHHHHHHhccc
Confidence 664 235666888888888888887664
|
In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.56 E-value=82 Score=42.27 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 040435 945 VGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKC 1021 (1991)
Q Consensus 945 v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~ 1021 (1991)
++..+|+.+.-.|++++|-.+.-.|...+..-|---+.-++..++......+ |....-+.+...|..+|..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4455666666667777777777777666666676666666666554433222 2222222344445555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=89.24 E-value=16 Score=42.04 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=89.9
Q ss_pred HHHHhcCCHHHHHHHHHhccC--CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhc
Q 040435 1153 DMYAKCGAIEASRKAFDQISR--KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHG 1224 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~--~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~ 1224 (1991)
..+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...+++.++. -|+. .-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 344556777778777777764 22 234455666777777777777777776653 2322 2233333332221
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
....... . ...++. ...+..++.-|=......+|...+..+...+ ..---.+..-|.+.|.+..
T Consensus 91 ~~~~~~~-----~---~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l---a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 91 KQIPGIL-----R---SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL---AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHH---------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---HHHHHHHHHHHHCTT-HHH
T ss_pred HhCccch-----h---cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccHHH
Confidence 1111100 0 000000 1233444444444555555555555443210 0111123455778899999
Q ss_pred HHHHHHHHHhcCCCCch---HHHHHHHHHHhCCCchhHH
Q 040435 1300 GAGATSRILELEAQNSA---GYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1300 A~~~~e~llel~P~~~~---~yvlL~~lya~~G~~~ea~ 1335 (1991)
|..-++.+++.-|+.+. +...+...|.+.|..+.+.
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999998754 4567788999999987443
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.18 E-value=77 Score=40.55 Aligned_cols=238 Identities=13% Similarity=0.174 Sum_probs=136.6
Q ss_pred HHHHHhcCC--CchhhhhHHHHhhhhcC------ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhhccChHHHHHHH
Q 040435 1064 WKLFNDVKK--PDVVLWSTMIAGFTLCG------RPREAIAVFQEMNQ-AQEKPNAI-TIINLLEACSVATELSSSKWAH 1133 (1991)
Q Consensus 1064 ~~lf~~m~~--~d~~syn~LI~~y~~~g------~~eeAl~lf~~M~~-~Gv~Pd~~-T~~~lL~a~a~~g~le~a~~i~ 1133 (1991)
..+|+...+ +....|+..|..|...- .....+.+|+.... .+..++.. .|..+.-..... ..++..-
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~---~~~r~~a 378 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTL---NEAREVA 378 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhcc---chHhHHH
Confidence 356665554 55666777776665432 33444555555443 33444433 333333332222 2233333
Q ss_pred HHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHh----cc----CCCHhHHHHHHHHHHHcCC-HHH-HHHHHHHHH
Q 040435 1134 GIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQ----IS----RKNIVSWSAMVAAYGMNGL-AHE-ALALVAEMK 1203 (1991)
Q Consensus 1134 ~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~----m~----~~d~~s~n~LI~ay~~~G~-~~e-Al~lf~eM~ 1203 (1991)
..+..-++..+...+-.-+....+... ++.-+|.+ .. .+-..+|++-+ .|. .+. .+.++-...
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 333334455555555544444432221 33333333 22 23445666655 121 111 122222222
Q ss_pred HCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHCccCCCC
Q 040435 1204 LGGLQPNAVTTL-SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDM---LARAGELDIAIDLINQMPDNLKA 1279 (1991)
Q Consensus 1204 ~~Gi~Pd~~T~~-~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~---l~r~G~~eeA~~l~~~m~~~~~p 1279 (1991)
..-..|+..|+. .++.-+-..|-+++|...+..+... -.|+...|.-||.. ...+| +.-+.++++.|...+-.
T Consensus 452 ~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 452 LSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGA 528 (568)
T ss_pred HHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCC
Confidence 223467777764 5667777889999999999988652 23367778888764 33445 88889999998765557
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCC
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILE-LEAQN 1314 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-l~P~~ 1314 (1991)
|+..|...+.--..+|..+-+-.++.++++ ++|+.
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 889999999988899999999999988877 56653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.12 E-value=3.7 Score=50.67 Aligned_cols=94 Identities=15% Similarity=0.017 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
..+..|.-.|.+.+++.+|++.-++..+..++|......=..||...|+++.|+..++++++++|+|-.+..-|..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677788899999999999999988876677888888899999999999999999999999999999888888877776
Q ss_pred CCCchhHH-HHHHHH
Q 040435 1328 GGLWVESS-GTRLLA 1341 (1991)
Q Consensus 1328 ~G~~~ea~-~vr~~m 1341 (1991)
..+..+.. ++++.|
T Consensus 338 ~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 338 IREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHH
Confidence 66665553 455555
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.96 E-value=2.6 Score=54.23 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=63.2
Q ss_pred HHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040435 1187 GMNGLAHEALALVAE-MKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDI 1265 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~e-M~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~ee 1265 (1991)
..+|++++++++.+. -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 345666666555541 1111111 23355566666677777777666543221 2455567777777
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
|.++.++.. +...|..|......+||.+.|+++++++- .+-.|+-+|...|+-+.
T Consensus 337 A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 337 ALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred HHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHH
Confidence 777766553 55677777777777777777777776642 24456666777776433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=88.87 E-value=20 Score=45.64 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACR 1292 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~ 1292 (1991)
..+...+-+.|..++|.+.+++|.+++...-.......|+..|...+++.++..++.+..+..-|. ...|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345556668899999999999998764332234567778999999999999999999886532232 345666555555
Q ss_pred HcCCh---------------hHHHHHHHHHHhcCCCCch
Q 040435 1293 SYGNT---------------ELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1293 ~~g~~---------------e~A~~~~e~llel~P~~~~ 1316 (1991)
.-|+. ..|.++..++++.+|..+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 44431 2356788899999997765
|
The molecular function of this protein is uncertain. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.47 E-value=8.3 Score=46.12 Aligned_cols=105 Identities=17% Similarity=0.041 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHCccCCCCCHHHH
Q 040435 1209 PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAG---ELDIAIDLINQMPDNLKATASAW 1284 (1991)
Q Consensus 1209 Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G---~~eeA~~l~~~m~~~~~pd~~~~ 1284 (1991)
-|...|..|-.+|...|+.+.|...|....+ +.| +.+.+..+..++.... ...+|.++|+++....+.|..+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3556677777777777777777777776654 444 3455555555544432 34567777777766545566666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.-|..++...|++.+|...++.|++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66666777777777777777777777665543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=88.09 E-value=11 Score=40.31 Aligned_cols=120 Identities=16% Similarity=0.279 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLV 1227 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~ 1227 (1991)
+|..+...+....+...++.+.. .+....|.+|..|++.+ ..+.++.++. ..+......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 33444444444444444444332 12344555555555543 2333344332 12333444566777777777
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEPALEHYSCMVDMLARA-GELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~-G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
+++..++..+.. |...++.+... ++.+.|.+++.+-. +...|..++..|.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~-----~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN-----NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC-----CHHHHHHHHHHHH
Confidence 777777765521 22333444444 67777777777532 4567777776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.68 E-value=5 Score=48.91 Aligned_cols=96 Identities=11% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH---hcC-CCCCHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKL----GGL-QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ---DHG-VEPALE 1248 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~----~Gi-~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~---~~g-i~P~~~ 1248 (1991)
.+..+..++.-.|+++.|.+.|+.-.. .|- .....+.-+|..+|.-...+++|+.++.+-+. +.+ ..-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344445555555555555555544321 111 11222344455555555566666666543221 101 122345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
.|-+|..++...|..+.|+.+.+.-
T Consensus 317 acwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5666667777777777777666544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.1e+02 Score=40.22 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=125.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISRK---NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLS 1219 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~---d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ 1219 (1991)
.+..+|..-++.-.+.|+.+.+..+|++..-| -...|-..+.-.-..|+.+-|-.++....+--++-...+-..--.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35667777888888899999999999988754 234566666555556888888777766554433333333222223
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHCccCCCCCHHHHHHHHHH-----
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPAL-EHYSCMVDMLARAGELDIAI---DLINQMPDNLKATASAWGALLSA----- 1290 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~~-~~y~~Li~~l~r~G~~eeA~---~l~~~m~~~~~pd~~~~~~Ll~a----- 1290 (1991)
-+-..|+.+.|..+++.+.++ . |+. ..----+.+.-|.|..+.+. +++...... +-+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-ccCcchhHHHHHHHHHHH
Confidence 356789999999999999876 4 763 33333456778889999888 555554432 2222233333222
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCc
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
+...++.+.|..++.++.+..|++-..|..+.++....+..
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 34567999999999999999999999999888887776643
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=87.47 E-value=1.3 Score=42.16 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccC---CC---CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDN---LK---AT-ASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~---pd-~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.|..+...|.+.|++++|++.+++..+. .. |+ ..++..+...+...|+.+.|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444555555555555544443220 11 11 33445555555555555555555555544
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.27 E-value=18 Score=44.85 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=89.7
Q ss_pred hcCCHHHHHHHHHhccCCCHh-HHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HH----------H
Q 040435 1157 KCGAIEASRKAFDQISRKNIV-SWSAMVAA--YGMNGLAHEALALVAEMKLGGLQPNAVTTLSV---LS----------A 1220 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~~d~~-s~n~LI~a--y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L---L~----------a 1220 (1991)
-.|+.++|..+-..+.+-|.. .+-..+.+ +-..++.+.|...|++.+. ..||...-... .. -
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 345555555554444443222 22222222 2234556666666666554 33544432221 11 1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH-HHHHHHH--HHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS-AWGALLS--ACR 1292 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~-~~~~Ll~--a~~ 1292 (1991)
..+.|.+..|.+.+.+.+. +.|+ ...|........|.|++++|+.--++... -|+. ++.-|.. ++.
T Consensus 259 ~fk~G~y~~A~E~Yteal~---idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALN---IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhccchhHHHHHHHHhhc---CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHH
Confidence 2467889999999987753 6664 45677777788899999999998888764 2433 3333333 344
Q ss_pred HcCChhHHHHHHHHHHhcCCC
Q 040435 1293 SYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~ 1313 (1991)
..++++.|++-++++++++.+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 567899999999999987765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=3.1 Score=52.47 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT-A---SAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd-~---~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
...+..+..+|.+.|++++|+..+++..+ +.|+ . .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe-L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE-LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56677777788888888888888887665 3444 2 35888888888888888888888888886
|
|
| >PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] | Back alignment and domain information |
|---|
Probab=86.81 E-value=3.3 Score=47.92 Aligned_cols=110 Identities=14% Similarity=0.009 Sum_probs=62.5
Q ss_pred CcchhhhHHHHhh-cccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCC
Q 040435 477 KYLSMLNHLRFYL-PEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSP 555 (1991)
Q Consensus 477 ~~~s~~~y~Rl~i-p~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1991)
+.+..++..|.-+ -+++..=--|||+|+|+|..+|..++++. .+.-+.+..|+.... ....
T Consensus 46 ~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~--~~~Di~~~~d~~~~~----------------~~~~ 107 (212)
T PF03407_consen 46 KAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFEN--PDADILFSSDGWDGT----------------NSDR 107 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhcc--CCCceEEecCCCccc----------------chhh
Confidence 3445556666543 33444334699999999999999999921 233233333421110 0111
Q ss_pred CCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhcccc
Q 040435 556 NACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLT 610 (1991)
Q Consensus 556 ~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~~ 610 (1991)
.+..+|+|++++.-..--..- +..|....... -...||.++|.++....
T Consensus 108 ~~~~~n~G~~~~r~t~~~~~~----~~~w~~~~~~~--~~~~DQ~~~n~~l~~~~ 156 (212)
T PF03407_consen 108 NGNLVNTGFYYFRPTPRTIAF----LEDWLERMAES--PGCWDQQAFNELLREQA 156 (212)
T ss_pred cCCccccceEEEecCHHHHHH----HHHHHHHHHhC--CCcchHHHHHHHHHhcc
Confidence 123469999999877654432 33455443322 12249999998876643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.63 E-value=4 Score=49.70 Aligned_cols=127 Identities=13% Similarity=0.046 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh---HHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCcc------CCCCCHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSM---VQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPD------NLKATAS 1282 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M---~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~------~~~pd~~ 1282 (1991)
.|..|-..|.-.|+++.|+..++.- .+++|-+.. ...++.|.+.+.-.|+++.|.+.++.... +-...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3555555556678899998877643 344554442 45788888889999999999888775421 1122455
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhc----C--CCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILEL----E--AQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel----~--P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+..+|.++|....+++.|+....+=+.+ + ....-++..|+++|...|..+.|...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7778999998888999999877765543 2 2245678999999999999988776544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=86.56 E-value=4.7 Score=43.53 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH----HhcCCCCCHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV----QDHGVEPALEH 1249 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~----~~~gi~P~~~~ 1249 (1991)
...++..+...|++++|+.+.+.+.... +-|...+..+|.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555556666666666666666532 3355566666666666666666666665542 24566666543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=86.02 E-value=2.4 Score=40.29 Aligned_cols=62 Identities=13% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQD---HGVE-PA-LEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~---~gi~-P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
+++.+...+...|++++|+.+|++.++. .|-. |. ..++..|..++.+.|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666655432 1111 11 4567778888888888888888887653
|
... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.24 E-value=1.1e+02 Score=38.37 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=109.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH-HH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGG-LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHY-SC 1252 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G-i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y-~~ 1252 (1991)
-...|...|..-.+..-.+.|..+|-+..+.| +.++...+++.|.-++ .|+...|..+|+.=+.. -||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 34578888888777777889999999999998 6678888888887554 67888999999865553 3443333 33
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
.++-+.+-++-+.|..+|+...+++..+ ..+|..+|.--..-|+..-+..+-+++.++-|.....-+.+
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~ 542 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFT 542 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHH
Confidence 4566788999999999999776654444 56899999888889999988888888889888765544433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.18 E-value=1.4 Score=34.57 Aligned_cols=33 Identities=30% Similarity=0.277 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
.+|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578899999999999999999999999999973
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif | Back alignment and domain information |
|---|
Probab=85.12 E-value=0.5 Score=55.72 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=19.1
Q ss_pred cchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEee--ccchhhh-ccccccccCCCcc-ccCCC
Q 040435 478 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAV--ETCKESF-HRFDKYLNFSNPL-ISENF 553 (1991)
Q Consensus 478 ~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV--~d~~~~~-~~~~~~~~~~~~~-~~~~~ 553 (1991)
.|++.-.+|=.+ .-+|+.+.|+|||+|.+|.+.=-.|-+.=|+-..+--. .+..... ..........++. +..-.
T Consensus 60 ~W~K~~~lr~~m-~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~ 138 (239)
T PF05637_consen 60 SWAKIPALRAAM-KKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLII 138 (239)
T ss_dssp HHTHHHHHHHHH-HH-TT-SEEEEE-TTEEE-------------------------------------------------
T ss_pred hhHHHHHHHHHH-HhCCCCCEEEEEcCCeEEEeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 355555555333 23588999999999999998766654432211110000 0000000 0011111111111 11112
Q ss_pred CCCCcccccceeEeehHHHHHhhHHHHHHHHHHhc---hhccccccCCCCchhhhhc------cccccccccccccccCC
Q 040435 554 SPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDAN---EDRTLWKLGTLPPGLITFY------NLTYPLDRSWHVLGLGY 624 (1991)
Q Consensus 554 ~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~---~~~~~~~~~dqd~~n~~f~------~~~~~L~~~wN~~~~~~ 624 (1991)
..+..|+|+|++++-...|-+.-+.. |.... .+.......+|.++-.++. +++..+|.+|= -.|
T Consensus 139 t~d~~gLNtGsFliRns~ws~~fLd~----w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~~~~~~~vpq~~~---nsy 211 (239)
T PF05637_consen 139 TQDWNGLNTGSFLIRNSPWSRDFLDA----WADPLYRNYDWDQLEFDEQSALEHLLQWHPEILSKVALVPQRWF---NSY 211 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccc---ccc
Confidence 34556999999999999999855442 33221 1111123678887764433 34445554431 111
Q ss_pred Cccc-cccccCCceEeecccC
Q 040435 625 DPAL-NLTQIDNGAVVHYNGN 644 (1991)
Q Consensus 625 ~~~~-~~~~~~n~~IiHY~g~ 644 (1991)
.... .....+...|+||.|+
T Consensus 212 ~~~~~~~~~~~GDfvvhfaGC 232 (239)
T PF05637_consen 212 PEDECNYQYKEGDFVVHFAGC 232 (239)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 1111 1122334478999996
|
This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.70 E-value=1.9 Score=33.57 Aligned_cols=33 Identities=33% Similarity=0.362 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 568888999999999999999999999999975
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=83.98 E-value=0.2 Score=52.08 Aligned_cols=110 Identities=19% Similarity=0.366 Sum_probs=58.8
Q ss_pred CcEEEEEEcCeEeEEEcCCCCCCCCchhHHHHHHHHhhcccccc-ccccccccccccc----ccccccccccCCCCCCCc
Q 040435 1350 AGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLACLVTAEKTDT-LLIKDVTSSERHS----KEYCAMYDICGERSDGKV 1424 (1991)
Q Consensus 1350 ~g~s~i~v~~~~~~F~~~d~~~~~p~~~~i~~~~~~l~~~~~~~-~~~~dvts~~~~~----~~~c~~~~~Cg~~~~~~~ 1424 (1991)
.||||+++ |.|++||.+ ||+...+..+.. ..+.+.+ .+..++...+.+. +..- -.|.| .++
T Consensus 1 ~~~~w~~~----h~F~sgd~s--hp~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~~d~~~~~~---~~~~H---SEK 66 (116)
T PF14432_consen 1 GGCSWIEV----HSFVSGDRS--HPQSELINKMKE--EGYVPDTKEVGHDVDEEEKHDYDEEEKEE---SLCYH---SEK 66 (116)
T ss_pred CCCCccce----EEEEeCCCc--CccHHHHHHHHH--cCCcchhhhhCCCchhhhhhhcccccchh---hhhcc---HHH
Confidence 38999998 999999987 677654444322 1222222 1122222221110 0001 11333 378
Q ss_pred cccCCCCCCCCCChhHHHHHHhhCcCCCCCCCCCHHHHHHHHHHHHhhcccccCChhHHhhH
Q 040435 1425 LNCPYGSPSVKPDELFSAKIESLCPSISGNVCCTETQFETLRAQVQQAIPFLVGCPACLRNF 1486 (1991)
Q Consensus 1425 l~c~~~~~~~~~~~~~~~~l~~~Cp~~~~~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~~N~ 1486 (1991)
|+.+++.... -....++++|+ .|-+.-..-.. + .-+.++-|.|.+++-|
T Consensus 67 lAiafgli~~----~vvkn~~RvC~-----DCH~~~K~iS~---~-~~ReIiVRD~~rfHhF 115 (116)
T PF14432_consen 67 LAIAFGLINT----RVVKNLKRVCG-----DCHSFIKFISK---I-TGREIIVRDSNRFHHF 115 (116)
T ss_pred HHHHhcccce----eEEecCCccch-----HHHHHHHHHHH---H-HCeEEEEeCCCeeeeC
Confidence 8888887654 22355668998 67665543222 2 1245666777776655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=83.92 E-value=43 Score=35.37 Aligned_cols=65 Identities=17% Similarity=0.040 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCc
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVK 1347 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~ 1347 (1991)
.....+.+...+|..++-.+++..+++-+..+|...+-++++|.+.|...++..+++.--++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445666677777777778888777666667777778888888888888888887777777765
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=83.54 E-value=26 Score=45.79 Aligned_cols=104 Identities=15% Similarity=0.060 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHCccC----CCCCHHHHHHHHHHHHHcCChhH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPALEHYSCM-VDMLARAGELDIAIDLINQMPDN----LKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~~~~y~~L-i~~l~r~G~~eeA~~l~~~m~~~----~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
...+.|.+++..+.+ .-|+...|... ..++...|++++|.+.++++... -.-....+--+...+...+++++
T Consensus 247 ~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 455666666666654 23544333222 33444556666666666654320 01122334444555556667777
Q ss_pred HHHHHHHHHhcCCCCchHHHHH-HHHHHhCCCc
Q 040435 1300 GAGATSRILELEAQNSAGYLLA-SSMYAAGGLW 1331 (1991)
Q Consensus 1300 A~~~~e~llel~P~~~~~yvlL-~~lya~~G~~ 1331 (1991)
|...+.++.+.+.-..+.|..+ +-.|...|+-
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 7777777766655555544433 4555566666
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.30 E-value=9.8 Score=47.14 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=45.0
Q ss_pred HHHHhcCCHHHHHHHHHhccC------------------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1153 DMYAKCGAIEASRKAFDQISR------------------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT 1214 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~------------------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~ 1214 (1991)
+.|.|.|++..|..-|++... .-+.+++.+..+|.+.+++.+|++.-++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 467788888888888776432 012234444455555555555555555554432 2333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
--=-.||...|.++.|+..|+.+++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3334444455555555555554443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.1e+02 Score=36.19 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=42.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNS---AGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~---~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
...-|.++|...-|..-++++++--|+.+ .++..+..+|...|..++|.+..+.+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34456778888888888888888766554 34556678888899998888888877643
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.08 E-value=2.1e+02 Score=39.01 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCchHHHHHHHHHHhCCC
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE-LEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-l~P~~~~~yvlL~~lya~~G~ 1330 (1991)
++..+....+.+++..+.+...+ .++..|-.+|.-+...+..+.-.+...++++ +..++--.-..+.+++++.+-
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~---~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK---EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc---cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 34445566677777777777753 3778888888888888876666555555544 333333334455666666654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=81.88 E-value=38 Score=36.21 Aligned_cols=84 Identities=8% Similarity=0.033 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 040435 812 LVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSG 891 (1991)
Q Consensus 812 ~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eA 891 (1991)
.++..+...+........++.+++.+. .+....|.|+.+|++-+.+.....+.. ..+......++..|-+.+.++++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 344444444555556666666655552 455566666766666433444444442 12223333355555555555555
Q ss_pred HHHHHHH
Q 040435 892 LRLFRQM 898 (1991)
Q Consensus 892 l~lf~~M 898 (1991)
.-++..+
T Consensus 89 ~~l~~k~ 95 (140)
T smart00299 89 VELYKKD 95 (140)
T ss_pred HHHHHhh
Confidence 5555554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=81.69 E-value=24 Score=40.64 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=30.9
Q ss_pred HHHhcCCHHHHHHHHHhcCC--Cc----hhhhhHHHHhhhhcCChHHHHHHHHHHHHC
Q 040435 1053 GYSKCHLVELAWKLFNDVKK--PD----VVLWSTMIAGFTLCGRPREAIAVFQEMNQA 1104 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~--~d----~~syn~LI~~y~~~g~~eeAl~lf~~M~~~ 1104 (1991)
.+...|++++|.+.|+.+.. |+ ..+.-.++.+|-+.|++++|...|++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556777777777776653 21 123344566677777777777777776653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.52 E-value=12 Score=43.83 Aligned_cols=97 Identities=8% Similarity=0.007 Sum_probs=63.9
Q ss_pred hHHHHHHhhcC--CCChHHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------
Q 040435 758 DSAVAVFDDCI--CRDSVSWNIMIQGHLDH-----GTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLG--------- 821 (1991)
Q Consensus 758 ~~A~~lfd~m~--~~d~~s~n~LI~a~~~~-----g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g--------- 821 (1991)
-.-++.|...+ ++|-.+|-+++..+... +..+=....++.|++-|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677776 67888888888877653 555666677888888899888888888888765432
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 040435 822 -------AYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD 854 (1991)
Q Consensus 822 -------~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak 854 (1991)
.-.-+..++++|...|+.||..+-..|++.+++
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 112244555555555555555555555555555
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.41 E-value=81 Score=37.29 Aligned_cols=160 Identities=20% Similarity=0.162 Sum_probs=101.3
Q ss_pred HhcCCHHHHHHHHHhccC--C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHh---
Q 040435 1156 AKCGAIEASRKAFDQISR--K----NIVSWSAMVAAYGMNGLAHEALALVAEMKLG-GLQPNA--VTTLSVLSACSH--- 1223 (1991)
Q Consensus 1156 ~k~G~~e~A~~lf~~m~~--~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~-Gi~Pd~--~T~~~LL~ac~~--- 1223 (1991)
...|++++|.+.|+.+.. | ...+--.++-++-+.+++++|+..+++.... +-.||. +.|...++-+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 356999999999999875 2 1234445566778899999999999997654 334433 234333332222
Q ss_pred -cCCHHH---HHHHHHHhHHhcC---CCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC---H
Q 040435 1224 -GGLVEE---GLSFFNSMVQDHG---VEPALE------------HYSCMVDMLARAGELDIAIDLINQMPDNLKAT---A 1281 (1991)
Q Consensus 1224 -~G~~e~---A~~i~~~M~~~~g---i~P~~~------------~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd---~ 1281 (1991)
..+... |..-|+..+.++- ..||.. +=..+.+-|.+.|.+..|..-+++|.++.+.. .
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 223333 4444444444322 122221 12345677899999999999999998763333 3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
..+-.|..+|...|-.++|.+..+-+-.--|+++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4566677899999999999996665555555553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.34 E-value=2.5e+02 Score=39.81 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=70.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A 1230 (1991)
.++.--+.|.+.+|..++..-.+.-...|.+...-+.+.+++++|.-+|+..-+ ..-.+.|+...|++.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333344455555555555322222233444444444556778888777765422 23456788889999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1231 LSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
+.+..+|.. +..--..+-..|+.-+...|+.-||-++..+...
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 998887732 1211233456788888889999999888888764
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.71 E-value=1.4e+02 Score=37.12 Aligned_cols=33 Identities=3% Similarity=-0.107 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1295 GNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1295 g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
++.+.+...++++.++.|....++..++..+..
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 678888999999999999888877777666554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=1.5e+02 Score=36.11 Aligned_cols=79 Identities=9% Similarity=-0.031 Sum_probs=35.2
Q ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCCh----HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1042 SNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRP----REAIAVFQEMNQAQEKPNAITIINLL 1117 (1991)
Q Consensus 1042 ~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~----eeAl~lf~~M~~~Gv~Pd~~T~~~lL 1117 (1991)
+|..+.-..+.++...|..+....+..-+..+|...=...+.++.+.|+. .+++.++..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444455555555433333332222334444334444555555542 3566666655332 34444444444
Q ss_pred HHHhh
Q 040435 1118 EACSV 1122 (1991)
Q Consensus 1118 ~a~a~ 1122 (1991)
.++..
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.32 E-value=9.8 Score=39.68 Aligned_cols=53 Identities=21% Similarity=0.068 Sum_probs=24.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
++..|+.+.|++.|.+.+.. .+-....|+.-..++.-.|+.++|+.-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555444432 112333444444444444555555444444444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=80.06 E-value=1.8e+02 Score=36.97 Aligned_cols=59 Identities=14% Similarity=-0.003 Sum_probs=40.7
Q ss_pred CHHHHHHHHHH--HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1280 TASAWGALLSA--CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1280 d~~~~~~Ll~a--~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+...-+.|..| ...+|++.++.-...-+.+..| ++.+|-++|-......++++|-+...
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455555555 3467777777777777777777 67777777777777777777776655
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1991 | ||||
| 3gkh_A | 232 | Npc1(ntd) Length = 232 | 7e-23 | ||
| 3qnt_A | 265 | Npc1l1 (Ntd) Structure Length = 265 | 5e-19 | ||
| 1g9r_A | 311 | Crystal Structure Of Galactosyltransferase Lgtc In | 5e-05 | ||
| 1ss9_A | 311 | Crystal Structural Analysis Of Active Site Mutant Q | 8e-05 |
| >pdb|3GKH|A Chain A, Npc1(ntd) Length = 232 | Back alignment and structure |
|
| >pdb|3QNT|A Chain A, Npc1l1 (Ntd) Structure Length = 265 | Back alignment and structure |
|
| >pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose Length = 311 | Back alignment and structure |
|
| >pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of Lgtc Length = 311 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens} Length = 265 | Back alignment and structure |
|---|
Score = 259 bits (662), Expect = 2e-78
Identities = 72/260 (27%), Positives = 109/260 (41%), Gaps = 30/260 (11%)
Query: 1402 SERHSKEYCAMYDICGERSD-------GKVLNCPYGSPSVKPDELFSAKIESLCPSI--- 1451
+ H YCA YD CG+ + ++C +P+ K ++ +CP +
Sbjct: 6 TTIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTG 65
Query: 1452 -SGNVCCTETQFETLRAQVQQAIPFLVGCPACLRNFLNLFCELSCSPNQSQFINVTSVSE 1510
+ CC+ Q +L A + L CPAC NF+NL C +CSPNQS FINVT V++
Sbjct: 66 PNTQACCSAKQLVSLEASLSITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQ 125
Query: 1511 VNGN--LTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDFI----GAGAKSFKEWFA 1564
+ V + + +F E+ Y+SC V+ T A+ + G+ + + W
Sbjct: 126 LGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVYGSALCNAQRWLN 185
Query: 1565 FIGQKAPPGFPGSPYAINFKLSIP---ESSGLELMNVSTYSC----GDTSLGCSCGDCPL 1617
F G +P I F L P SG++ +N C GD CSC DC
Sbjct: 186 FQGDTGN---GLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAA 242
Query: 1618 SPMCSSSEPPSPPRKEACTI 1637
S C + P +
Sbjct: 243 S--CPAIARP-QALDSTFYL 259
|
| >3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A* Length = 232 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 1e-76
Identities = 73/239 (30%), Positives = 109/239 (45%), Gaps = 26/239 (10%)
Query: 1408 EYCAMYDICGERSDGKVLNCPYGSPSVKPDELFSAKIESLCPSI---SGNVCCTETQFET 1464
+ C Y CG K NC Y P + ++ LCP ++CC Q +T
Sbjct: 3 QSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQT 62
Query: 1465 LRAQVQQAIPFLVGCPACLRNFLNLFCELSCSPNQSQFINVTSVSEVNGNLT------VD 1518
L+ +Q + FL CP+C N LNLFCEL+CSP QSQF+ VT+ + +T V
Sbjct: 63 LKDNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVK 122
Query: 1519 GIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDFIG---AGAKSFKEWFAFIGQKAPPGFP 1575
+ YYV +F +YN+C+DV+ + N +A+ + A A W ++ K
Sbjct: 123 ELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACQATNWIEYMFNKDN---G 179
Query: 1576 GSPYAINFKLSIPESSGLELMNVSTYSCGDT----SLGCSCGDCPLSPMCSSSEPPSPP 1630
+P+ I S G+E MN +T C ++ + CSC DC + C P
Sbjct: 180 QAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIV--C-----GPKP 231
|
| >1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 | Back alignment and structure |
|---|
Score = 213 bits (545), Expect = 7e-62
Identities = 51/341 (14%), Positives = 108/341 (31%), Gaps = 63/341 (18%)
Query: 372 FSDN-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENID 430
DN V S A + + FH++ ++ I+ +++
Sbjct: 7 ADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN 65
Query: 431 SFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLP 490
+ N +++S+ + R L
Sbjct: 66 PEDFAGFPL-----------------------------------NIRHISITTYARLKLG 90
Query: 491 EVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAV-ETCKESFHRFDKYLNFSNPLI 549
E +K+L+LD D++V+ LTPLW DL GA + E + + + ++
Sbjct: 91 EYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADG-- 148
Query: 550 SENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNL 609
+ G+ + +LK+WR+ +I + W + +D ++ + GL F
Sbjct: 149 -------EYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGG 199
Query: 610 TYPLDRSWHVLGLGYDPALNLTQ--------------IDNGAVVHYNGNNKPWLDLAVSK 655
+ ++ + Y N + AV HY G KPW +
Sbjct: 200 VCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAW 259
Query: 656 YKPYWSKYVILWSLRLRTWNLRVKELSKNGKWQELFSHYHE 696
+++ + W ++ + + + +
Sbjct: 260 GAERFTELAGSLTTVPEEWRGKLAVPHRMFSTKRMLQRWRR 300
|
| >3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 47/304 (15%), Positives = 98/304 (32%), Gaps = 60/304 (19%)
Query: 372 FSDN-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENID 430
+N + V++ S + +++ +++ D
Sbjct: 12 LDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISE----------------------D 48
Query: 431 SFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLP 490
K L L R + F + + R
Sbjct: 49 KLKDLGEDLKKFSYTLYPIRATDDLFS--------------FAKVTDRYPKEMYYRLLAG 94
Query: 491 EVYPK-LEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLI 549
E P+ L +IL+LD D++V L L D+ + A ++ + +N +
Sbjct: 95 EFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKT--------DMANNVN 146
Query: 550 SENFSPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDANEDRTLWKLGTLPPGLITFYN 608
+ + G+ + +LK R+ I+ + +D + + L L + +
Sbjct: 147 RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNLLLPDQDIL---NAMYGD 203
Query: 609 LTYPLD-RSWHVLGLGYDPALNLTQ--------IDNGAVVHYNGNNKPWLDLAVSKYKPY 659
YPLD ++ Y L ++ +D+ V+H+ G +KPW +K+
Sbjct: 204 RIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSL 263
Query: 660 WSKY 663
+ Y
Sbjct: 264 YKHY 267
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.0 bits (204), Expect = 8e-16
Identities = 100/666 (15%), Positives = 205/666 (30%), Gaps = 193/666 (28%)
Query: 285 SIAKDQLYDCPTVQRKFRAMIQSTE--------GTVTALKRKSSFLIQLAAKIVPRPLHC 336
+ + +DC VQ ++++ E V+ R L+ ++V + +
Sbjct: 28 AFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 337 LPLQLAADY-YLQGHHKKEEQINEKFEDPSL-------YHYAIFSDNVLATSVVVNSTVA 388
+ L +Y +L I + PS+ +++DN + V+
Sbjct: 86 V---LRINYKFLM------SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 389 HAK--------EPEKHVF-HIVTDKLNFVAM----KMWFLVNAPPKATIQIENIDSFKWL 435
+ K P K+V + K W ++ +Q + WL
Sbjct: 137 YLKLRQALLELRPAKNVLID---------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 436 NSSYC----SVLRQLES--ARL-KEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFY 488
N C +VL L+ ++ + +++H S++ +++ + L +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 489 L-------PEVYPKLE---KILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRF 538
L + + KIL V L+ + + + T E
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 539 DKYLNFSNPLISENFSPNACGWA-FGMNMF--DLKEWRKRNITGIYHYWQDANEDRTLWK 595
KYL+ ++ +++ +++ + W+ N D+
Sbjct: 308 LKYLD----CRPQDLPREVLTTNPRRLSIIAESIRDGLAT-----WDNWKHVNCDK---- 354
Query: 596 LGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAV-- 653
LT ++ S +VL +PA ++ L+V
Sbjct: 355 -------------LTTIIESSLNVL----EPAEYRK--------MFD-------RLSVFP 382
Query: 654 -SKYKPYWSKYVILWSLRLRTWNLR-------VKELSK----NGKWQELFSHYHETKKVV 701
S + P ++W +++ V +L K + +E
Sbjct: 383 PSAHIPT-ILLSLIW------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP------ 429
Query: 702 VDLNDPSVYPLVVKACSNLSYIHGRLVHACLVKQGYES------------FTSIG----N 745
S+Y + N +H +V + + ++S ++ IG N
Sbjct: 430 ------SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 746 ALMD-----F---YMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYK 797
F ++ +RF + I DS +WN L+ TL + FYK
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQK-------IRHDSTAWN-ASGSILN--TLQQ--LKFYK 531
Query: 798 ARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGY--IIRSGLWAVHSVQNSVLSMYVDA 855
+ +P LV I L E L Y ++R L +++ +A
Sbjct: 532 PYICDNDPKYERLVNAIL--DFLPKIEENLICSKYTDLLRIAL------MAEDEAIFEEA 583
Query: 856 DMECAR 861
+ R
Sbjct: 584 HKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 6e-14
Identities = 73/550 (13%), Positives = 164/550 (29%), Gaps = 154/550 (28%)
Query: 118 DSFQAGMNLEENVEYPMGDHQSEEVGFFNRQKPPLSPVKLKRQMLRQKRME--------- 168
D+F + ++ + P EE+ K +S L K+ E
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 169 LRT-----AELIRQDNENDNIMQETAFEQSKRL--EPRVTGKYSIWRRDFE--------- 212
LR I+ + ++M EQ RL + +V KY++ R
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 213 -SPNTD-----------STL--KLMRDQIILAKA-----YAHVAKSKNESSL---YNSLM 250
P + + + + + K + ++ + ++ L+
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 251 KHCKESQRAIGDANSDAELPSSALNQA-----QAMGH-----VLSIAKDQLYDCPTVQRK 300
+ + D +S+ +L ++ ++ + VL + +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----LNVQN-AKAWNA 261
Query: 301 F----RAMIQSTEGTVT----ALKRKSSFLI------------QLAAKIVPRPLHCLPLQ 340
F + ++ + VT A L L K + LP +
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 341 -----------LAA---------DYYLQGHHKKEEQINEKF---EDPSLY--HY---AIF 372
+A D + + K I E +P+ Y + ++F
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 373 SDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSF 432
+ ++++ ++ + V +V + ++ P ++TI I +I
Sbjct: 382 PPSAHIPTILL--SLIWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSI--- 431
Query: 433 KWLNSSYCSVLRQLES-----ARLKEYY-----FKANHPSSLSAGSDNLKYRNPKYLSML 482
Y + +LE+ + ++Y F ++ D Y ++
Sbjct: 432 ------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL--DQYFY---SHIG-- 478
Query: 483 NHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYL 542
+HL+ L +++FLD + QK + A + + + Y
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQK-------IRHDSTAWNASGSILNTLQQLKFYK 531
Query: 543 NFSNPLISEN 552
+ I +N
Sbjct: 532 PY----ICDN 537
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 7e-10
Identities = 55/401 (13%), Positives = 113/401 (28%), Gaps = 89/401 (22%)
Query: 2 EARRRFFTLSSFDR-LLV---VALSLVI--------VHITTVNAEVPDVRRLQRELKAHR 49
RR ++ LLV V + + +TT +V D L H
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHI 289
Query: 50 PLYDKGDGAARFNNDPDIKDIDIIATYSDVSGAVRISRVKMSHLSASWILENPADGDNGL 109
L D + ++ Y D + L P +
Sbjct: 290 SLDHHSMT---LTPD---EVKSLLLKYLD---------CRPQDL--------PREVLTTN 326
Query: 110 PNSSQTLGDSFQAGMNLEENVEYPMGDHQSEEVG-FFNRQKPPLSPVKLKRQMLRQ---- 164
P + +S + G+ +N ++ D + + N +P R+M +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-----RKMFDRLSVF 381
Query: 165 --------KRMELRTAELIRQDNENDNIMQETAFEQS----KRLEPRVTGKYSIWRRDFE 212
+ L ++I+ D ++ + + K+ + SI+
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM--VVVNK--LHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 213 SPNTDSTL-KLMRDQIILAKAYAHVAKSKNESS--LYNSLMKHCKESQRAIGDANSDAEL 269
+ L + + D + K + Y+ + H K +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH----PERMTLF 493
Query: 270 PSSALN---QAQAMGHVLSIAKDQLYDCPTVQ--RKFRAMIQSTEGT----VTALKRKSS 320
L+ Q + H + T+Q + ++ I + V A+
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--- 550
Query: 321 FLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKF 361
FL ++ ++ L L++A L + E E
Sbjct: 551 FLPKIEENLICSKYTDL-LRIA----LM--AEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 2e-08
Identities = 93/609 (15%), Positives = 173/609 (28%), Gaps = 157/609 (25%)
Query: 1006 EVDEITLVN--ILQI-CKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVEL 1062
E E IL + FV +CK V + + E ID H++
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILSKEE------ID-----HIIMS 57
Query: 1063 AWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSV 1122
+ V + W TL + E + F E + N +++ ++
Sbjct: 58 K----DAVSGTLRLFW-------TLLSKQEEMVQKFVE---EVLRINYKFLMSPIKTEQR 103
Query: 1123 ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASR-KAFDQISRKNIVSWSA 1181
+ + R E+ ++AK SR + + ++ R+ ++
Sbjct: 104 QPSM----------MTRMYIEQRDRLYNDNQVFAK---YNVSRLQPYLKL-RQALLELRP 149
Query: 1182 M--VAAYGMNG-----LAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFF 1234
V G+ G +A + K+ + L++ + S ++E
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCL---SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 1235 NSMVQDHGVEPALEHYSCMVDMLARAGELDIAI-DLINQMP--------DNLKATASAWG 1285
+ + +H ++ R + + L+ P N++ A AW
Sbjct: 207 YQIDPNWTSRS--DH---SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-NAKAWN 260
Query: 1286 ALLSAC------RSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339
A +C R T+ + AT+ + L+ +S L
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVK-------------SL 306
Query: 1340 LAKERGVK-------VVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLACLVTAEKTD 1392
L K + V+ N I E + + V +K
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPR------RLSII-AESIRDGLATWDNWKH---VNCDKLT 356
Query: 1393 TLLIKDVTSSERHSKEYCAMYDICGERSDGKVLNCPYGSPSVK-PDELFS----AKIESL 1447
T++ + E EY M+D V PS P L S I+S
Sbjct: 357 TIIESSLNVLE--PAEYRKMFDRLS------VFP-----PSAHIPTILLSLIWFDVIKSD 403
Query: 1448 CPSISGNVCCTETQFETLRAQVQQAIPFLVGCPACLRNFLNLFCELSCSPNQSQFINVTS 1507
+ + +Q + P +++ EL ++ +
Sbjct: 404 VMVV-------VNKLHKYSLVEKQPKESTISIP-------SIYLELKVKLENEYALHRSI 449
Query: 1508 VSEVN-------GNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDFIGAGAKSFK 1560
V N +L +D Y S G L N + +D
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---------- 499
Query: 1561 EWFAFIGQK 1569
F F+ QK
Sbjct: 500 --FRFLEQK 506
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 3e-06
Identities = 73/493 (14%), Positives = 126/493 (25%), Gaps = 179/493 (36%)
Query: 97 WILENPADGDNGLPNSSQTLGDSFQAGMNLEENVEYPMGDHQSEEVGFFNRQKPPLSPVK 156
W+ + + Q L +Q N ++ L
Sbjct: 186 WLNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSDHS--------------SNIKLRIHS 229
Query: 157 LKRQMLR-QKRMELRTAELIRQDNENDNIMQETAFE-QSK------------RLEPRVTG 202
++ ++ R K L+ + +N AF K L T
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWN--AFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 203 KYSI--WRRDFESPNTDSTL---------------------------KLMRDQIILAKAY 233
S+ S L + +RD + +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 234 AHVAKSK----NESSLYNSL----MKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLS 285
HV K ESSL N L + + + ++ A +P+ +LS
Sbjct: 348 KHVNCDKLTTIIESSL-NVLEPAEYRKMFD-RLSV--FPPSAHIPT----------ILLS 393
Query: 286 I--AKDQLYDCPTVQRKF--RAMI--QSTEGTVT------ALKRKSSFLIQLAAKIVPR- 332
+ D V K +++ Q E T++ LK K L IV
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 333 ------PLHCLPLQLAADYYLQ--GHHKKEEQINEKFED-PSLYHYAIFSDNVLATSVVV 383
L Y+ GHH K + E+ ++
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---------------- 497
Query: 384 NSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443
D F+ K I + + + S + L
Sbjct: 498 ------------------LD-FRFLEQK--------------IRHDSTAWNASGSILNTL 524
Query: 444 RQLESARLKEY--YFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILF 501
+Q LK Y Y N PKY ++N + +LP++ L +
Sbjct: 525 QQ-----LKFYKPYICDND---------------PKYERLVNAILDFLPKIEENLICSKY 564
Query: 502 LDDDIVVQKDLTP 514
D +++ L
Sbjct: 565 TD---LLRIALMA 574
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-05
Identities = 94/642 (14%), Positives = 192/642 (29%), Gaps = 213/642 (33%)
Query: 748 MDF---YMKWRFPDSAVAVF-----DDCICRDSVSW-----------NIMIQGHLDHGTL 788
MDF ++++ D ++VF D+ C+D +I++ GTL
Sbjct: 7 MDFETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 789 GEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQV-HGYIIRSGLWAVHSVQNS 847
L+W ++ + V E L++ + +++ Q S
Sbjct: 66 R--LFWTLLSK-----QEEMVQKFVE----------EVLRINYKFLMSP--IKTEQRQPS 106
Query: 848 VLS-MYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEP 906
+++ MY+ E +L+ D V V + + LR Q + +
Sbjct: 107 MMTRMYI----EQRDRLY-----NDN---QVFAKYNVSRLQPYLKLR---QALLELRPAK 151
Query: 907 D---------GQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLG-CDLFVGNSLIDMYAK- 955
+ G++ L C + + + + L C+ ++++M K
Sbjct: 152 NVLIDGVLGSGKT-WVALDVC---LSYKVQCKMDFKIFWLNLKNCN--SPETVLEMLQKL 205
Query: 956 CKDTDSAFKVFSEMPQKNKVSWNSA---LSGLVVNEKYSEALSLLYSMGKGVNEVDEITL 1012
D + S+ K+ +S L L+ ++ Y L +L
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL----------LN--- 252
Query: 1013 VNILQICKCFVHPMECKSVHCVIL---RRAFESNELVLNSLIDGYSKCHLVELAWKLFND 1069
V + F ++ C IL R + V + L + H+ +
Sbjct: 253 VQNAKAWNAF-------NLSCKILLTTR-----FKQVTDFL-SAATTTHISL------DH 293
Query: 1070 VKKPDVVLWSTMIAGFTLCGRPREAIAVFQEM--NQAQEKPNAITIINLLEACSVATELS 1127
T P E ++ + + Q+ P + N +A +
Sbjct: 294 HSM-----------TLT----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIR 338
Query: 1128 SSK-----WAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEAS---------RKAFDQIS- 1172
W H V+ IE+S RK FD++S
Sbjct: 339 DGLATWDNWKH------------------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 1173 -RKNI--------VSWSAMVAAYGMNGLAHEALALVAEMKLGGL---QPNAVTT------ 1214
+ + W ++ + + + +V ++ L QP T
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKS--------DVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 1215 LSVLSACS-----HGGLVEEGLSFFNSMVQDHGVEPALEHYSC--------MVDMLARAG 1261
L + H +V+ + + D + P L+ Y ++ R
Sbjct: 433 LELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 1262 EL-DIAIDL--INQMPDNLKATASAWGA------LLSACRSY 1294
+ +D + Q ++ ++AW A L + Y
Sbjct: 492 LFRMVFLDFRFLEQ---KIRHDSTAWNASGSILNTLQQLKFY 530
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 2e-08
Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 14/141 (9%)
Query: 1041 ESNELVLNSLIDGYSKCHLVELAWKLFNDVKK-------PDVVLWSTMIAGFTLCGRPRE 1093
+ L + + LA L + +++ ++ G+ G +E
Sbjct: 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKE 183
Query: 1094 AIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153
+ V + A P+ ++ L+ + + I RCL + G +
Sbjct: 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAG-------TIERCLEQMSQEGLKLQA 236
Query: 1154 MYAKCGAIEASRKAFDQISRK 1174
++ E R + K
Sbjct: 237 LFTAVLLSEEDRATVLKAVHK 257
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.0 bits (120), Expect = 4e-06
Identities = 37/349 (10%), Positives = 95/349 (27%), Gaps = 20/349 (5%)
Query: 1092 REAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAV 1151
+ A + QA E P + LL+ L + G + L+ + A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 1152 VDMYAKCGAIEASRKAFDQISRK-------NIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204
+ + + + ++A++ + G E + ++ +K
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 1205 GGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELD 1264
GL P+ ++ + L + + G++ + ++ RA L
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 1265 IAIDLINQM-----PDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQ---NSA 1316
+ T+ + + +L + E Q A
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELA 313
Query: 1317 GYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRG 1376
+ S+ + S + K + + K +
Sbjct: 314 SRVCVVSVEKP---TLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFS 370
Query: 1377 SEVILLACLVTAEKTDTLLIKDVTSSERHSKEYCAMYDICGERSDGKVL 1425
L CL+ + +L++ + + + + + R+ + +
Sbjct: 371 LYPFL--CLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHV 417
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.5 bits (111), Expect = 5e-05
Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 12/127 (9%)
Query: 895 FRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYR-----GLGCDLFVGNSL 949
S + Q L++ K C + H LV++ L + N++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQ--LPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171
Query: 950 IDMYAKCKDTDSAFKVFSEMPQK----NKVSWNSALSGLVVNEKYSEALS-LLYSMGKGV 1004
+ +A+ V + + +S+ +AL + ++ + + L M +
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231
Query: 1005 NEVDEIT 1011
++ +
Sbjct: 232 LKLQALF 238
|
| >1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 8e-04
Identities = 41/254 (16%), Positives = 71/254 (27%), Gaps = 41/254 (16%)
Query: 472 KYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETC 531
+ P+ L L + Y K +F+D D +V ++ L+ +
Sbjct: 74 LMKRPELGVTLTKLHCWSLTQY---SKCVFMDADTLVLANIDDLFERE------------ 118
Query: 532 KESFHRFD-KYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANED 590
E D + + N + + P+ + L + N
Sbjct: 119 -ELSAAPDPGWPDCFNSGVFV-YQPSVETYN------QLLHVASEQGSFDGGDQGLLNTF 170
Query: 591 RTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLD 650
W + L YNL + Y PA N VVH+ G KPW
Sbjct: 171 FNSWATTDIRKHLPFIYNL-------SSISIYSYLPAFKAFG-ANAKVVHFLGQTKPWNY 222
Query: 651 LAVSKYKPYWSKYVILWSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVY 710
+K K S+ + N+ W + + + D Y
Sbjct: 223 TYDTKTKSVRSEGHDPTMTHPQFLNV---------WWDIFTTSVVPLLQQFGLVQDTCSY 273
Query: 711 PLVVKACSNLSYIH 724
V +S++
Sbjct: 274 QHVEDVSGAVSHLS 287
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1991 | |||
| 3qnt_A | 265 | Niemann-PICK C1-like protein 1; cholesterol transp | 100.0 | |
| 3gkj_A | 232 | Niemann-PICK C1 protein; oxysterol, cholesterol, c | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 3tzt_A | 276 | Glycosyl transferase family 8; structural genomics | 100.0 | |
| 1g9r_A | 311 | Glycosyl transferase; alpha-beta structure; HET: U | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.89 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.88 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.88 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.85 | |
| 1ll2_A | 333 | Glycogenin-1; protein-substrate complex, beta-alph | 99.83 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.82 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.8 | |
| 3u2u_A | 263 | Glycogenin-1, GN-1, GN1; structural genomics, stru | 99.8 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.77 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.73 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.72 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.67 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.63 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.61 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.6 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.6 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.54 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.53 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.51 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.51 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.5 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.49 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.47 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.47 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.45 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.44 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.41 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.41 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.4 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.39 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.38 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.34 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.33 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.32 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.3 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.27 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.25 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.18 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.18 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.17 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.16 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.14 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.13 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.12 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.12 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.06 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.05 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.05 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.03 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.02 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.02 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.01 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.01 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.99 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.98 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.98 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.97 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.96 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.94 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.92 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.92 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.91 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.9 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.89 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.86 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.83 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.79 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.79 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.74 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.73 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.68 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.67 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.67 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.63 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.62 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.52 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.51 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.51 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.5 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.49 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.41 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.41 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.4 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.39 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.39 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.39 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.38 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.37 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.35 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.31 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.28 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.2 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.19 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.17 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.17 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.16 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.15 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.12 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.11 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.1 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.09 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.07 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.04 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.0 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.99 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.98 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.97 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.97 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 97.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.95 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.92 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.92 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.89 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.8 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.8 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 97.79 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.78 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.76 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.76 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.71 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.66 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.62 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.61 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.61 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.56 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.55 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.54 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.52 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.51 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.48 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.47 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.42 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.41 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.37 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.37 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.34 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.31 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.31 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.31 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.31 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.28 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.28 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.24 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.24 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.2 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.19 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.16 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.15 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.15 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.12 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.11 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.1 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.0 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.9 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.87 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.83 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.45 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.41 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.37 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.19 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.13 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.1 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 95.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 95.7 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.55 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 95.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 95.0 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.95 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 94.94 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 94.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 94.51 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 94.16 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 93.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.43 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 93.35 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 93.25 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 93.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.78 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 92.71 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 91.08 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 89.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 88.75 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 87.81 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 85.77 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 83.99 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 83.22 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 82.62 |
| >3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-64 Score=572.13 Aligned_cols=234 Identities=31% Similarity=0.629 Sum_probs=197.8
Q ss_pred ccccccccccccccCCCCC-------CCccccCCCCCCCCCChhHHHHHHhhCcCCC---CC-CCCCHHHHHHHHHHHHh
Q 040435 1403 ERHSKEYCAMYDICGERSD-------GKVLNCPYGSPSVKPDELFSAKIESLCPSIS---GN-VCCTETQFETLRAQVQQ 1471 (1991)
Q Consensus 1403 ~~~~~~~c~~~~~Cg~~~~-------~~~l~c~~~~~~~~~~~~~~~~l~~~Cp~~~---~~-~CC~~~q~~~l~~~~~~ 1471 (1991)
.+|++++|+|||+||++++ ++.|||+|+++|++++++++++|+++||++. +. +|||.+|+++|++||++
T Consensus 7 ~~~~~g~C~~yg~Cg~~~~~~~~~~~~~~l~C~~n~~a~~~~~~~~~~L~~~Cp~~~~~~~~~~CC~~~Ql~~L~~nl~~ 86 (265)
T 3qnt_A 7 TIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSI 86 (265)
T ss_dssp CCCCTTBCSEEEEEECCTTSCTTSCCCCCEEEECCCBCEECCHHHHHHHHHHSGGGCCSSSCEESCCHHHHHHHHHHHHH
T ss_pred CccCCCcceEecccCCCccccccccCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999875 8999999999999999999999999999974 23 89999999999999999
Q ss_pred hcccccCChhHHhhHhhhccccccCcCCCcceEEEeecccC--CcceEEEEEEEEchhhhHHHhhcCcCCCCCCCChhHH
Q 040435 1472 AIPFLVGCPACLRNFLNLFCELSCSPNQSQFINVTSVSEVN--GNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAI 1549 (1991)
Q Consensus 1472 ~~~~~~~CpaC~~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~~am 1549 (1991)
|+++|+|||||++||++|||+|||||+||+||+||++.+.+ ++++|++|+|||+++||+++|||||||+||+||++||
T Consensus 87 a~~il~rCPaC~~Nf~~lfC~~TCSP~QS~Fl~vt~t~~~~~~~~~~V~eldy~i~~~fa~~~YdSCKdV~~p~tn~~Am 166 (265)
T 3qnt_A 87 TKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAV 166 (265)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHCTTGGGTEEEEEEECCSSSSCCEEEEEEEEEEHHHHHHHHHHHTTCBCTTSSCBTT
T ss_pred HHHHhCcChHHHHHHHHHhcCCCCCCCcccceeeEeecccCCCCcceEEEEEEEECHHHhhhHhhhhcCcccccccchhh
Confidence 99999999999999999999999999999999999987643 6778999999999999999999999999999999999
Q ss_pred hhcCC--CcC--CHHHHHHhhcCCCCCCCCCCCeEEEeecCCCC---CCccccCCCCccCCCCC----CCCcccCCCCCC
Q 040435 1550 DFIGA--GAK--SFKEWFAFIGQKAPPGFPGSPYAINFKLSIPE---SSGLELMNVSTYSCGDT----SLGCSCGDCPLS 1618 (1991)
Q Consensus 1550 ~~~g~--~a~--~~~~~l~flG~~~~~~~~~sPfqInf~~~~~~---~~~~~~~~~~~~~C~~~----~~~CsC~dC~~s 1618 (1991)
|+||| ||+ ||++||+|||++++ ++|||||||+++... ..+|+|||..+++|||+ +++|||+||++|
T Consensus 167 ~l~cG~~gA~~Cn~~~wl~flG~~~n---~~sPFqInf~~~~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~~s 243 (265)
T 3qnt_A 167 GTMCGVYGSALCNAQRWLNFQGDTGN---GLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAAS 243 (265)
T ss_dssp GGGSTTSCSSSCCHHHHHHHHTCTTT---TCCSSEEEEEEECHHHHTTSSCCCBCCCCCCTTSCCTTTCCCCCTTTCGGG
T ss_pred hhhcCCcCcCCCCHHHHHHHhccccC---CCCCeEEEeeccCCCccCCCCceECCCCCcCCCCCCCCCCCCEecccchhh
Confidence 99987 665 99999999999873 689999999986421 25899999999999986 579999999986
Q ss_pred CCCCCCCCCCCCCCCCceeEecCccc
Q 040435 1619 PMCSSSEPPSPPRKEACTIRIGSLKV 1644 (1991)
Q Consensus 1619 ~~C~~~~~~~~~~~~~~~~~i~~~~~ 1644 (1991)
||++|+| || .+.+|+|||+++
T Consensus 244 --Cp~~p~~-p~--~~~p~~I~gldg 264 (265)
T 3qnt_A 244 --CPAIARP-QA--LDSTFYLGQMPG 264 (265)
T ss_dssp --CCC---------------------
T ss_pred --cCCCCCC-CC--CCCCcEEEeeeC
Confidence 9887554 33 344678888864
|
| >3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-62 Score=548.27 Aligned_cols=213 Identities=34% Similarity=0.713 Sum_probs=193.8
Q ss_pred ccccccccccCCCCCCCccccCCCCCCCCCChhHHHHHHhhCcCCC---CCCCCCHHHHHHHHHHHHhhcccccCChhHH
Q 040435 1407 KEYCAMYDICGERSDGKVLNCPYGSPSVKPDELFSAKIESLCPSIS---GNVCCTETQFETLRAQVQQAIPFLVGCPACL 1483 (1991)
Q Consensus 1407 ~~~c~~~~~Cg~~~~~~~l~c~~~~~~~~~~~~~~~~l~~~Cp~~~---~~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~ 1483 (1991)
+++|+|||+||++++++.|||+|+++|++++++++++|+++||++. +.+|||.+|+++|++||++++++|+|||||+
T Consensus 2 ~~~C~~yg~Cg~~~~~~~l~C~~~~~a~~~~~~~~~~L~~~Cp~~~~~~~~~CC~~~Ql~~L~~nl~~a~~il~rCPaC~ 81 (232)
T 3gkj_A 2 AQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCF 81 (232)
T ss_dssp -CCCSEEEEEEEEETTEEEEEECCSCCEECCGGGHHHHHHHCGGGCSTTCEESCCHHHHHHHHHTTHHHHHHHTTCHHHH
T ss_pred CCcceecCccCCCCCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCHHHHHHHHHHHHHHHHhcCcChHHH
Confidence 4689999999998889999999999999999999999999999975 2499999999999999999999999999999
Q ss_pred hhHhhhccccccCcCCCcceEEEeecc----c--CCcceEEEEEEEEchhhhHHHhhcCcCCCCCCCChhHHhhc-CCCc
Q 040435 1484 RNFLNLFCELSCSPNQSQFINVTSVSE----V--NGNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDFI-GAGA 1556 (1991)
Q Consensus 1484 ~N~~~~~C~~tCsP~Qs~F~~v~~~~~----~--~~~~~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~~am~~~-g~~a 1556 (1991)
+||++|||+|||||+||+||+||++.+ . +++++|++|+|||+++||+++|||||||+||+||++||||| |+||
T Consensus 82 ~Nf~~l~C~~TCSP~QS~Fl~vt~t~~~~d~~~~~~~~~V~ev~y~v~~~fa~~~YdSCkdV~~p~t~~~Am~l~CG~ga 161 (232)
T 3gkj_A 82 YNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDA 161 (232)
T ss_dssp HHHHHHHHHHHHCTTHHHHEEEEEEEEEECTTTCCEEEEEEEEEEEECHHHHHHHHHHHTTCBCTTSSSBTHHHHSSSCT
T ss_pred HHHHHHhcCCCCCCccccceeeEeccccccccccCCcceEEEEEEEECHHHHHHHhhhhhCcccccccchhHHhhcCCCC
Confidence 999999999999999999999999865 2 35678999999999999999999999999999999999998 7777
Q ss_pred C--CHHHHHHhhcCCCCCCCCCCCeEEEeecCCCCCCccccCCCCccCCCC----CCCCcccCCCCCCCCCCCC
Q 040435 1557 K--SFKEWFAFIGQKAPPGFPGSPYAINFKLSIPESSGLELMNVSTYSCGD----TSLGCSCGDCPLSPMCSSS 1624 (1991)
Q Consensus 1557 ~--~~~~~l~flG~~~~~~~~~sPfqInf~~~~~~~~~~~~~~~~~~~C~~----~~~~CsC~dC~~s~~C~~~ 1624 (1991)
+ ||++||+|||+++ +|+|||||||+++.....||+|||..+++||+ .+++|||+||++| ||++
T Consensus 162 ~~C~~~~wl~flG~~~---ng~sPfqInf~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~~s--Cp~~ 230 (232)
T 3gkj_A 162 DACQATNWIEYMFNKD---NGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIV--CGPK 230 (232)
T ss_dssp TTCCHHHHHHHHTCGG---GSSSSSEEEEEECSSCBTTBCCBCCCCCCTTSCSBTTBCCCCGGGCGGG--C---
T ss_pred CCCCHHHHHHHhcccc---CCCCCeEEEeeccCCCCccceECCCCCcCCCCCCCCCCCCEECccchhh--cCCC
Confidence 6 9999999999986 35899999999877656799999999999985 4689999999986 9653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=392.78 Aligned_cols=498 Identities=10% Similarity=-0.040 Sum_probs=361.1
Q ss_pred HHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 750 FYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQV 829 (1991)
Q Consensus 750 ~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l 829 (1991)
.+.++|.+..++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356788899999999999999999999999999999999999999999985 458889999999999999999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhc-CCC------------------CHHHHHHHHHHHHHcCChH
Q 040435 830 HGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEM-CER------------------DVISWSVMIGGYVQSAEAF 889 (1991)
Q Consensus 830 ~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m-~~~------------------d~~syn~LI~a~~~~G~~~ 889 (1991)
+..+... .++..+++.++.+|.+ |++++|.++|+++ +.. +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 5788899999999999 9999999999955 433 4899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChH--HHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 890 SGLRLFRQMVSGFKNEPDGQ-SLVSVLKACTNLRDLT--MGRMV-HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKV 965 (1991)
Q Consensus 890 eAl~lf~~M~~~~gv~Pd~~-T~~~lL~a~~~~g~~~--~a~~l-~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~l 965 (1991)
+|+++|++|.+. .|+.. .+..+...+...+..+ .+..+ +..+...+......+++.++.+|.+.|++++|.++
T Consensus 218 ~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 218 RAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 999999999874 45433 3333333222221111 11111 44445555555667788889999999999999999
Q ss_pred hccCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCc
Q 040435 966 FSEMPQ--KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESN 1043 (1991)
Q Consensus 966 f~~m~~--~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d 1043 (1991)
|+++.+ ++..+|+.++.+|.+.|++++|+.+|++|...+ | .+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----------------------------------~~ 338 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--P----------------------------------YN 338 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TC
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--c----------------------------------cc
Confidence 999987 799999999999999999999999999986532 1 13
Q ss_pred hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1044 ELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEAC 1120 (1991)
Q Consensus 1044 ~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~ 1120 (1991)
..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++..|.+.|++++|+++|++|.+. .|
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~------------ 404 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DP------------ 404 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC------------
Confidence 33444555555555555555555555432 34455555666666666666666666655442 11
Q ss_pred hhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHH
Q 040435 1121 SVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALA 1197 (1991)
Q Consensus 1121 a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~ 1197 (1991)
.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|++
T Consensus 405 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 405 ----------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 1223344455555555555555555555432 355677777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1198 LVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH---GVEPA--LEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1198 lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~---gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
+|++|.+.. +.+..+|..+...|.+.|++++|.++|++|.+.. +..|+ ..+|..++.+|.+.|++++|.+++++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777777643 3356777777777788888888888887776532 56787 78999999999999999999999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1273 MPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1273 m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
+.+..+.+..+|..|..+|...|+.++|...++++++++|+++..+..|+++|..
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8765566899999999999999999999999999999999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=380.97 Aligned_cols=480 Identities=9% Similarity=-0.052 Sum_probs=400.5
Q ss_pred Hhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 040435 852 YVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMV 930 (1991)
Q Consensus 852 yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l 930 (1991)
+.+ |....+..+|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|+++.|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344 6778888999999999999999999999999999999999999985 568999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCC-CC------------------CHhHHHHHHHHHHhcCCHH
Q 040435 931 HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMP-QK------------------NKVSWNSALSGLVVNEKYS 991 (1991)
Q Consensus 931 ~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~-~~------------------dv~s~n~LI~a~~~~g~~~ 991 (1991)
+..+.. ..++..+++.++.+|.++|++++|.++|+++. .. +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 998754 36789999999999999999999999999543 33 4889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHH-HHHHHHHHhccCChhh--HHHH-HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHH
Q 040435 992 EALSLLYSMGKGVNEVDEIT-LVNILQICKCFVHPME--CKSV-HCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLF 1067 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~~T-~~~lL~a~~~~g~~~~--a~~i-~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf 1067 (1991)
+|+++|++|.+. .|+..+ +..+...+...+..+. +..+ +..+...+......+|+.++.+|.++|++++|.++|
T Consensus 218 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999874 354443 3333332222211111 1111 344445555666778899999999999999999999
Q ss_pred HhcCC--CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccch
Q 040435 1068 NDVKK--PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEV 1145 (1991)
Q Consensus 1068 ~~m~~--~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~ 1145 (1991)
+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..++..++.++...|+.++|..++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 899999999999999999999999999999765 2366788999999999999999999999998654 5578
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
.+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 8999999999999999999999998864 468899999999999999999999999999864 457889999999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----CCCC--HHHHHHHHHHHHHcC
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN-----LKAT--ASAWGALLSACRSYG 1295 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~~pd--~~~~~~Ll~a~~~~g 1295 (1991)
+.|++++|.++|++|.+. ...+..+|..++.+|.+.|++++|.+++++|.+. ..|+ ..+|..++.+|..+|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999874 2336889999999999999999999999998652 3566 789999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1296 NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
++++|...++++++++|+++..|..++++|...|+|++|....+.+.+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998776654
|
| >3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=365.65 Aligned_cols=258 Identities=17% Similarity=0.184 Sum_probs=181.7
Q ss_pred cceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 366 LYHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 366 ~~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
.+||++++|+ +.+++|+|+|+++|+++ .+++|||++++++.+..+ .|
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~------------------------------~L 53 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLK------------------------------DL 53 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHH------------------------------HH
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHH------------------------------HH
Confidence 3899999996 66999999999999985 579999999987755443 44
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
+++.......+.+...+...+. .....+++|.++|+||++|+++|+ ++||||||+|+||++||++||++|++|
T Consensus 54 ~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~ 127 (276)
T 3tzt_A 54 GEDLKKFSYTLYPIRATDDLFS------FAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISD 127 (276)
T ss_dssp HHHHHTTTCEEEEEECC-------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTT
T ss_pred HHHHHHcCCEEEEEEeCHHHHh------cCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCC
Confidence 4443221112222111111110 111235788999999999999995 999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCch
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPG 602 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~ 602 (1991)
+.+|||+||.... +.+.....+++..++||||||||+|+++||+.+++++++.|++.+... ..++|||++
T Consensus 128 ~~~aav~d~~~~~--------~~~~~~~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~--~~~~DQd~L 197 (276)
T 3tzt_A 128 YILAAASHTGKTD--------MANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMN--LLLPDQDIL 197 (276)
T ss_dssp SSEEEEEC----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHH
T ss_pred CeEEEEEecccch--------HHHHHHHhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccc--ccCCChhHH
Confidence 9999999976531 111111223444469999999999999999999999999998876543 567999999
Q ss_pred hhhhccccccccc-cccccccCCCccc--------c-ccccCCceEeecccCCCccccccccccccccchhhhhhhhhc
Q 040435 603 LITFYNLTYPLDR-SWHVLGLGYDPAL--------N-LTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRL 671 (1991)
Q Consensus 603 n~~f~~~~~~L~~-~wN~~~~~~~~~~--------~-~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l 671 (1991)
|++|.++++.||+ +||+++ ++.... . ....++++||||+|..|||+..+..+++++||+|.++..+++
T Consensus 198 N~~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 198 NAMYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp HHHHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 9999999999999 999985 332110 0 113468999999999999999999999999999999887765
|
| >1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-33 Score=337.57 Aligned_cols=248 Identities=19% Similarity=0.246 Sum_probs=182.8
Q ss_pred ceEEEEccc--chhhHHHHHHH-hhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 367 YHYAIFSDN--VLATSVVVNST-VAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 367 ~hi~~~~Dn--~~~~~v~i~Si-l~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
+||++++|+ +.++.|++.|+ ++|++ .+++|||++++++.+..+ .|
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~------------------------------~L 48 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRA------------------------------AV 48 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHH------------------------------HH
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHH------------------------------HH
Confidence 699999996 66999999999 99874 469999999987755444 33
Q ss_pred HHHhhc-cceEEEecCCCCCCCcCCcCCcccC-CCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCC
Q 040435 444 RQLESA-RLKEYYFKANHPSSLSAGSDNLKYR-NPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLH 521 (1991)
Q Consensus 444 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~ 521 (1991)
+++... ......++... ..+. ++. +.+++|..+|+||++|++||++|||||||+|+||++||++||++|++
T Consensus 49 ~~~~~~~~~~i~~~~~~~-~~~~------~~~~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~ 121 (311)
T 1g9r_A 49 AANLRGGGGNIRFIDVNP-EDFA------GFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLG 121 (311)
T ss_dssp HHHSGGGTTTEEEEECCG-GGGT------TSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCT
T ss_pred HHHHHHcCCEEEEEEcCH-HHHh------cCccccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCC
Confidence 333221 11111111110 0000 111 13578889999999999999999999999999999999999999999
Q ss_pred CCeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCc
Q 040435 522 GMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPP 601 (1991)
Q Consensus 522 ~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~ 601 (1991)
|+.+|||+|+...... ......++++..+||||||||+|+++||+.++++++.+|++..... +.++|||+
T Consensus 122 ~~~~aav~d~~~~~~~--------~~~~~~~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~ 191 (311)
T 1g9r_A 122 DNWLGASIDLFVERQE--------GYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDV--MQYQDQDI 191 (311)
T ss_dssp TCSEEEEECHHHHTST--------THHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTT--CSSHHHHH
T ss_pred CcEEEEEeccchhhhH--------HHHHhcCCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCc--CccCCcCH
Confidence 9999999987543110 0001123445578999999999999999999999999998876533 67899999
Q ss_pred hhhhhccccccccccccccccCCCc-------c---c----cccccCCceEeecccCCCccccccccccccccchh
Q 040435 602 GLITFYNLTYPLDRSWHVLGLGYDP-------A---L----NLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKY 663 (1991)
Q Consensus 602 ~n~~f~~~~~~L~~~wN~~~~~~~~-------~---~----~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~y 663 (1991)
+|.+|.++++.||++||++...+.. . . .....++++||||+|..|||...+.++..++|+++
T Consensus 192 lN~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~ 267 (311)
T 1g9r_A 192 LNGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTEL 267 (311)
T ss_dssp HHHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHH
T ss_pred HHHHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHH
Confidence 9999999999999999998522110 0 0 01223578999999999999888777766666544
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=263.63 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=113.1
Q ss_pred HHHHHHhcCC-----CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccC---------hHH
Q 040435 1063 AWKLFNDVKK-----PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATE---------LSS 1128 (1991)
Q Consensus 1063 A~~lf~~m~~-----~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~---------le~ 1128 (1991)
+..+++++.+ .....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4444455543 23346888999999999999999999999999999999999999999987654 445
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1129 SKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1129 a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
|.++++.|.+.|+.||..+||+||.+|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555554432 4444555555555555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 040435 1205 GGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLA 1258 (1991)
Q Consensus 1205 ~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~ 1258 (1991)
.|+.||..||++||.+|++.|++++|.+++++|. +.|+.|+..+|+.+++.+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555543 2344444444444444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=260.11 Aligned_cols=210 Identities=10% Similarity=-0.033 Sum_probs=158.4
Q ss_pred HHHHHHHHhcCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcC
Q 040435 993 ALSLLYSMGKGVNEVDE-ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVK 1071 (1991)
Q Consensus 993 Al~lf~~M~~~Gi~Pd~-~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~ 1071 (1991)
+..+.++|.+.++.+.. ..++.+|.+|++.|++++|.++|..|.+.|+.||..+||+||.+|++.+...+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~--------- 79 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE--------- 79 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS---------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh---------
Confidence 33444455544444332 23555555666666666666666666666666666666666666655544221
Q ss_pred CCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHH
Q 040435 1072 KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAV 1151 (1991)
Q Consensus 1072 ~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naL 1151 (1991)
..+.+..++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||..+||+|
T Consensus 80 -------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 80 -------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp -------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred -------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 1234556889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.|+..++..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999974 899999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-19 Score=227.32 Aligned_cols=373 Identities=12% Similarity=0.022 Sum_probs=279.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHH
Q 040435 915 LKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYS 991 (1991)
Q Consensus 915 L~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~ 991 (1991)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667788888888888877654 23455666777778888888888887766542 36677888888888888888
Q ss_pred HHHHHHHHHhcCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhc
Q 040435 992 EALSLLYSMGKGVNEVDE-ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDV 1070 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~-~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m 1070 (1991)
+|+..|+++.. +.|+. .++..+..++...|++++|...+..+++.. +.+..++..+...|...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888765 23433 345566666666666666666666665543 122334445555555566666666666555
Q ss_pred CC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhH
Q 040435 1071 KK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAV 1147 (1991)
Q Consensus 1071 ~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v 1147 (1991)
.+ | +..+|+.+...|.+.|++++|+..|+++.+ .. +.+...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~~-p~~~~~ 205 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-----------------------------------LD-PNFLDA 205 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----------------------------------HC-TTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------cC-CCcHHH
Confidence 42 2 344555555555556666666655555544 22 123445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
+..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++...
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 66677788888899999988887653 3 57889999999999999999999999999853 23567889999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
|++++|.+.++.+++. ...+...+..+..++.+.|++++|.+.++++.+..+.+..+|..+..++...|+.++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999874 33468899999999999999999999999998766667899999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1305 SRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1305 e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+++++++|+++..|..++.+|...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=217.97 Aligned_cols=351 Identities=14% Similarity=0.094 Sum_probs=289.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH
Q 040435 982 SGLVVNEKYSEALSLLYSMGKGVNEVDEI-TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLV 1060 (1991)
Q Consensus 982 ~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~-T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l 1060 (1991)
..+.+.|++++|+..+.++.+. .|+.. .+..+...+...++++++...+..+++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4455667777777777666542 34433 33344445556677777777776666543 45677888888999999999
Q ss_pred HHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhccChHHHHHHHHHH
Q 040435 1061 ELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI-TIINLLEACSVATELSSSKWAHGIA 1136 (1991)
Q Consensus 1061 ~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-T~~~lL~a~a~~g~le~a~~i~~~~ 1136 (1991)
++|...|+++.+ | +..+|..+...|.+.|++++|++.|.++.+. .|+.. .+..+-..+...|++++|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999988763 4 4457888999999999999999999998874 46544 4455666677889999999999888
Q ss_pred HHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 040435 1137 IRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAV 1212 (1991)
Q Consensus 1137 ~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~ 1212 (1991)
.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 8764 34567888999999999999999999998864 35678999999999999999999999999874 45 577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
++..+..++...|++++|.+.|+.+++ +.| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 889999999999999999999999986 566 4788999999999999999999999999876677899999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
...|+.++|...+++++++.|+++..+..++.+|...|++++|....+.+.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988776653
|
| >1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-21 Score=231.28 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=141.3
Q ss_pred cceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 366 LYHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 366 ~~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
..+|++.+|+ +.++.|++.|+++|++. .++++ +++++++....+ .|
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~------------------------------~L 51 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRK------------------------------AL 51 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHH------------------------------HH
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHH------------------------------HH
Confidence 4678888875 66899999999999765 35666 667676544333 33
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGM 523 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~ 523 (1991)
+++ ......++..... . ..+.... +......+|.||+++++ ++++||||||+|+||++||++||+++
T Consensus 52 ~~~---~~~v~~v~~l~~~--~--~~~~~~~-~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~---- 118 (333)
T 1ll2_A 52 EIV---FDEVITVDILDSG--D--SAHLTLM-KRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE---- 118 (333)
T ss_dssp HHH---CSEEEECCTTSTT--S--TTHHHHH-HCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----
T ss_pred HHh---CCEEEEEeecCCc--c--hhhcccc-cccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----
Confidence 333 1122222211100 0 0000000 01123589999999995 77999999999999999999999997
Q ss_pred eeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchh
Q 040435 524 VNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGL 603 (1991)
Q Consensus 524 ~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n 603 (1991)
.+|||+|. +| .+||||||||+|++.-. .+++.++.... ..+.++||+++|
T Consensus 119 ~~aAv~d~--------------------~~---~~~fNsGvmlin~~~~~----~~~l~~~~~~~---~~~~~~DQ~~LN 168 (333)
T 1ll2_A 119 ELSAAPDP--------------------GW---PDCFNSGVFVYQPSVET----YNQLLHVASEQ---GSFDGGDQGLLN 168 (333)
T ss_dssp SSEEEECS--------------------SS---TTSEEEEEEEECCCHHH----HHHHHHHHHHT---CCTTSSHHHHHH
T ss_pred ceeEEecC--------------------CC---CcceeeeEEEEeCCHHH----HHHHHHHHHhc---CCCCCCCHHHHH
Confidence 47788762 12 25999999999875322 23344444432 246789999999
Q ss_pred hhhcccc-----ccccccccccccC-CCcccc-ccccCCceEeecccCCCccccccccc
Q 040435 604 ITFYNLT-----YPLDRSWHVLGLG-YDPALN-LTQIDNGAVVHYNGNNKPWLDLAVSK 655 (1991)
Q Consensus 604 ~~f~~~~-----~~L~~~wN~~~~~-~~~~~~-~~~~~n~~IiHY~g~~KPW~~~a~~~ 655 (1991)
.+|.+.+ +.||..||++... |..... .....+++||||+|..|||......+
T Consensus 169 ~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~ 227 (333)
T 1ll2_A 169 TFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTK 227 (333)
T ss_dssp HHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETT
T ss_pred HHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCC
Confidence 9998654 7999999998421 111001 12356889999999999997664443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-18 Score=218.58 Aligned_cols=347 Identities=10% Similarity=-0.002 Sum_probs=236.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHH
Q 040435 974 KVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDG 1053 (1991)
Q Consensus 974 v~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~ 1053 (1991)
...|..+...|.+.|++++|+.+|+++... ...+..++..+..++...|++++|...+..+++.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344555555555555555555555554432 11123333333444444444444444444444333 2234556666677
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ch---hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChH
Q 040435 1054 YSKCHLVELAWKLFNDVKK--P-DV---VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELS 1127 (1991)
Q Consensus 1054 y~k~G~l~~A~~lf~~m~~--~-d~---~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le 1127 (1991)
|.+.|++++|.+.|+++.+ | +. ..|..++..+...+ +..+...+...|+++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHH
Confidence 7777777777777776654 2 22 44554443311111 111122234455555
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1128 SSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1128 ~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
.|...+..+.+.. +.+..++..+..+|.++|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++..
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555432 23556777888889999999999999988764 4678999999999999999999999999986
Q ss_pred CCCCCCHHH-HHHH------------HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 040435 1205 GGLQPNAVT-TLSV------------LSACSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1205 ~Gi~Pd~~T-~~~L------------L~ac~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA 1266 (1991)
. .|+... +..+ ..+|.+.|++++|.++|+.+++ +.|+ ..+|..++.++.+.|++++|
T Consensus 240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3 454443 3333 7889999999999999999987 4555 45899999999999999999
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHH------------HHHHhCC--Cch
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLAS------------SMYAAGG--LWV 1332 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~------------~lya~~G--~~~ 1332 (1991)
.+.++++.+..+.+..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...| ++.
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 99999987644567899999999999999999999999999999999999999999 5677777 555
Q ss_pred hHHHHHHHHHHcCCcccCc
Q 040435 1333 ESSGTRLLAKERGVKVVAG 1351 (1991)
Q Consensus 1333 ea~~vr~~m~~~gi~k~~g 1351 (1991)
...++++.+++.+++..|.
T Consensus 395 ~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGG
T ss_pred CHHHHHHHHHHHHHHhCCC
Confidence 5566777777666665554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-17 Score=216.29 Aligned_cols=442 Identities=9% Similarity=-0.065 Sum_probs=293.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040435 873 ISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDM 952 (1991)
Q Consensus 873 ~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~ 952 (1991)
..|......+.+.|++++|+..|.++... .|+..++..+..++...|+++.|...+..+++.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34555566677777777777777777763 3677777777777777777777777777777654 3345667777777
Q ss_pred HHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHH
Q 040435 953 YAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECK 1029 (1991)
Q Consensus 953 y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~ 1029 (1991)
|.+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 7777777777777766532 2333334444444433333333333333322222222221111111011111111111
Q ss_pred HHHHHHHHhcC---------CCchhhhhhHHHHHH---hcCCHHHHHHHHHhcCC-----------------CchhhhhH
Q 040435 1030 SVHCVILRRAF---------ESNELVLNSLIDGYS---KCHLVELAWKLFNDVKK-----------------PDVVLWST 1080 (1991)
Q Consensus 1030 ~i~~~~~~~g~---------~~d~~v~naLI~~y~---k~G~l~~A~~lf~~m~~-----------------~d~~syn~ 1080 (1991)
.+...+..... +.+...+..+...+. +.|++++|...|+++.+ .+..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111110 111333333333333 37888888888877644 13456778
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA 1160 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~ 1160 (1991)
+...|...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8888889999999999999888754 446677778888888899999988888887764 3356678888899999999
Q ss_pred HHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040435 1161 IEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSM 1237 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M 1237 (1991)
+++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.++++.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999988753 356788888999999999999999999988743 335667888888899999999999999988
Q ss_pred HHhcCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1238 VQDHGVEPA----LEHYSCMVDMLAR---AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1238 ~~~~gi~P~----~~~y~~Li~~l~r---~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
.+...-.+. ...+..+..+|.+ .|++++|.+.++++....+.+..+|..+...+...|+.+.|...+++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 764322232 3488888999999 999999999999887655567888999999999999999999999999999
Q ss_pred CCCCchHHHHHH
Q 040435 1311 EAQNSAGYLLAS 1322 (1991)
Q Consensus 1311 ~P~~~~~yvlL~ 1322 (1991)
+|+++..+..+.
T Consensus 479 ~~~~~~~~~~~~ 490 (514)
T 2gw1_A 479 ARTMEEKLQAIT 490 (514)
T ss_dssp CSSHHHHHHHHH
T ss_pred ccccHHHHHHHH
Confidence 998887766553
|
| >3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=210.92 Aligned_cols=209 Identities=14% Similarity=0.137 Sum_probs=137.2
Q ss_pred EEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHH
Q 040435 369 YAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQL 446 (1991)
Q Consensus 369 i~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l 446 (1991)
+.+.+|+ +.++.|++.|+.++++. .++++ +++++++.... ..|+++
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~------------------------------~~L~~~ 55 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMR------------------------------KVLETV 55 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHH------------------------------HHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHH------------------------------HHHHHc
Confidence 3455664 66999999999998764 34544 56766554332 244433
Q ss_pred hhccceEEEecCCCCCCCcCCcCCcc-cCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCee
Q 040435 447 ESARLKEYYFKANHPSSLSAGSDNLK-YRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVN 525 (1991)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~ 525 (1991)
.......+...... ..+.. +..+. + ..+|.||+++.+.+ +|||||||+|++|++||++||+++ .+
T Consensus 56 ---~~~vi~V~~l~~~~----~~~~~~~~rp~-~-~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~ 121 (263)
T 3u2u_A 56 ---FDEVIMVDVLDSGD----SAHLTLMKRPE-L-GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----EL 121 (263)
T ss_dssp ---SSEEEECCCCCCCC----HHHHHHTTCTT-G-GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SS
T ss_pred ---CCeEEEeeecCCcc----hhhhhhhcCcc-h-hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cc
Confidence 22222222111100 00011 11121 2 36889999999765 899999999999999999999997 47
Q ss_pred EeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhh
Q 040435 526 GAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLIT 605 (1991)
Q Consensus 526 aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~ 605 (1991)
|||+|. ++ ..||||||||+|++. ++.+++.++.... ..+.++|||++|.+
T Consensus 122 aA~~d~--------------------~~---~~~fNsGv~li~p~~----~~~~~l~~~~~~~---~~~~~~DQd~LN~~ 171 (263)
T 3u2u_A 122 SAAPDP--------------------GW---PDCFNSGVFVYQPSV----ETYNQLLHLASEQ---GSFDGGDQGILNTF 171 (263)
T ss_dssp EEEECT--------------------TS---TTSEEEEEEEECCCH----HHHHHHHHHHHHH---CCTTSSHHHHHHHH
T ss_pred eEeccC--------------------CC---CccccCeEEEEcccH----HHHHHHHHHHHhc---CCCCcccHHHHHHH
Confidence 888762 11 259999999999864 4445555555432 23778999999999
Q ss_pred hcc-----cccccccccccccc-CCCcccc-ccccCCceEeecccCCCccccccc
Q 040435 606 FYN-----LTYPLDRSWHVLGL-GYDPALN-LTQIDNGAVVHYNGNNKPWLDLAV 653 (1991)
Q Consensus 606 f~~-----~~~~L~~~wN~~~~-~~~~~~~-~~~~~n~~IiHY~g~~KPW~~~a~ 653 (1991)
|.+ .++.||..||++.. .|..... ....++++||||+|..|||.....
T Consensus 172 f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~ 226 (263)
T 3u2u_A 172 FSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYD 226 (263)
T ss_dssp TTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEEE
T ss_pred hccccccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCCCCCC
Confidence 988 78999999999731 1111111 122468899999999999976543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-17 Score=211.02 Aligned_cols=425 Identities=10% Similarity=-0.051 Sum_probs=313.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHh
Q 040435 910 SLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVV 986 (1991)
Q Consensus 910 T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~ 986 (1991)
.+...-..+...|+++.|...+..+++.. |+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 44555667788999999999999999876 6899999999999999999999999998753 467789999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhH---HHHHHhcCCHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSL---IDGYSKCHLVELA 1063 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naL---I~~y~k~G~l~~A 1063 (1991)
.|++++|+..|+++...+. ++......++..+........+.+.+..+...+..++....... ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999987652 33344444444333222222222222111111111111100000 0001111111122
Q ss_pred HHHHHhcCC---------C-chhhhhHHHHhhh---hcCChHHHHHHHHHHHH-----CCCCC--------CHHHHHHHH
Q 040435 1064 WKLFNDVKK---------P-DVVLWSTMIAGFT---LCGRPREAIAVFQEMNQ-----AQEKP--------NAITIINLL 1117 (1991)
Q Consensus 1064 ~~lf~~m~~---------~-d~~syn~LI~~y~---~~g~~eeAl~lf~~M~~-----~Gv~P--------d~~T~~~lL 1117 (1991)
...+..... | +...|..+...+. +.|++++|+.+|+++.+ ....| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222211 1 2334444444444 48999999999999987 32222 234666777
Q ss_pred HHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHH
Q 040435 1118 EACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHE 1194 (1991)
Q Consensus 1118 ~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~e 1194 (1991)
..+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999999999987654 78888999999999999999999998865 367789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1195 ALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1195 Al~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
|+..|+++.+.. +.+..++..+...+...|++++|.++++.+.+. .| +...+..+..+|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999998854 335677888889999999999999999999774 44 5678999999999999999999999988
Q ss_pred ccCCCCC------HHHHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1274 PDNLKAT------ASAWGALLSACRS---YGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1274 ~~~~~pd------~~~~~~Ll~a~~~---~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
....+.+ ..+|..+...+.. .|+++.|...++++++++|+++..+..++.+|...|++++|........+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6521112 3489999999999 99999999999999999999999999999999999999999987765543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=197.53 Aligned_cols=432 Identities=10% Similarity=-0.006 Sum_probs=305.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040435 872 VISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLID 951 (1991)
Q Consensus 872 ~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~ 951 (1991)
...|..+...+.+.|++++|++.|+++.+. ...+...+..+..++...|+++.|.+.+..+++.. +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 456677778888889999999999888874 23356778888888888889999998888888765 346778888999
Q ss_pred HHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHhccCCh
Q 040435 952 MYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKG------VNEVDEITLVNILQICKCFVHP 1025 (1991)
Q Consensus 952 ~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~------Gi~Pd~~T~~~lL~a~~~~g~~ 1025 (1991)
+|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+. ..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcCh
Confidence 9999999999999997443 22223333455666667778899999998653 23455555444433 2222
Q ss_pred hhHHHHHHHHHHhcCCCchh---hhhhHHHHHHhc--------CCHHHHHHHHHhcCC--Cc--------hhhhhHHHHh
Q 040435 1026 MECKSVHCVILRRAFESNEL---VLNSLIDGYSKC--------HLVELAWKLFNDVKK--PD--------VVLWSTMIAG 1084 (1991)
Q Consensus 1026 ~~a~~i~~~~~~~g~~~d~~---v~naLI~~y~k~--------G~l~~A~~lf~~m~~--~d--------~~syn~LI~~ 1084 (1991)
+.+...+ ......+.. ....+...|... |++++|..+|+++.+ |+ ..+|..+...
T Consensus 177 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 177 HLEVSSV----NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp HHHHHTS----CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 2221111 111112221 444444444433 478888888888865 33 2346667777
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHH
Q 040435 1085 FTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEAS 1164 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A 1164 (1991)
+...|++++|+..|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 88889999999999998875 4667777778888888899999999888888765 33566788888888899999999
Q ss_pred HHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 040435 1165 RKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH 1241 (1991)
Q Consensus 1165 ~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~ 1241 (1991)
...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999887764 356788888888889999999999998888753 3345677788888888899999999988876532
Q ss_pred CCCC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1242 GVEP----ALEHYSCMVDMLARA----------GELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1242 gi~P----~~~~y~~Li~~l~r~----------G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
.-.+ ....+..+..+|.+. |++++|...++++.+..+.+..+|..+...+...|+.+.|...++++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111 123345556777777 88999999988887655567788888888888999999999999999
Q ss_pred HhcCCCCchHHH
Q 040435 1308 LELEAQNSAGYL 1319 (1991)
Q Consensus 1308 lel~P~~~~~yv 1319 (1991)
+++.|..+....
T Consensus 489 l~~~~~~~~~~~ 500 (537)
T 3fp2_A 489 AILARTMDEKLQ 500 (537)
T ss_dssp HHHC--CHHHHH
T ss_pred HHhCCCcHHHHH
Confidence 999888766543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-15 Score=188.71 Aligned_cols=360 Identities=12% Similarity=0.043 Sum_probs=225.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHH
Q 040435 907 DGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSG 983 (1991)
Q Consensus 907 d~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a 983 (1991)
+...+..+...+.+.|+++.|..++..+++.. +.+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34556666666777777777777777776553 23566666777777777777777777766543 345666677777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Q 040435 984 LVVNEKYSEALSLLYSMGKGVNEVDE----ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHL 1059 (1991)
Q Consensus 984 ~~~~g~~~eAl~lf~~M~~~Gi~Pd~----~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~ 1059 (1991)
|.+.|++++|+..|+++... .|+. ..+..+...+.. ..+..+...|.+.|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 77777777777777776542 3332 222222221100 011223344566667
Q ss_pred HHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHH
Q 040435 1060 VELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIA 1136 (1991)
Q Consensus 1060 l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~ 1136 (1991)
+++|...|+++.+ .+...|..+...|.+.|++++|++.|+++.+.
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------- 206 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-------------------------------- 206 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------
Confidence 7777666666543 34555666666666666666666666666543
Q ss_pred HHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHH------------HHHHHHcCCHHHHHHHHHH
Q 040435 1137 IRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAM------------VAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1137 ~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~L------------I~ay~~~G~~~eAl~lf~e 1201 (1991)
. +.+..++..+...|.+.|++++|...|+++.+ | +...|..+ ...|.+.|++++|+.+|++
T Consensus 207 ---~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 207 ---K-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp ---H-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 12334455555555666666666666655542 2 23333333 6778888888888888888
Q ss_pred HHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1202 MKLGGLQPN-----AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1202 M~~~Gi~Pd-----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
+.+ +.|+ ...+..+..++.+.|++++|.++++.+.+ +.| +...|..+..+|.+.|++++|.+.++++.+
T Consensus 283 ~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 283 VMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 876 3455 34567777788888888888888888765 345 577888888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHhcCCCCch----------HHHHHHHHHHh
Q 040435 1276 NLKATASAWGALLSA------------CRSYG-----NTELGAGATSR-ILELEAQNSA----------GYLLASSMYAA 1327 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a------------~~~~g-----~~e~A~~~~e~-llel~P~~~~----------~yvlL~~lya~ 1327 (1991)
..+.+..+|..|..+ |...| +.+++.+.+++ +++..|++.. .+..++.+|..
T Consensus 358 ~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~ 437 (450)
T 2y4t_A 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEV 437 (450)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 444456677666633 33334 56777888886 7888887532 34455666666
Q ss_pred CCCchh
Q 040435 1328 GGLWVE 1333 (1991)
Q Consensus 1328 ~G~~~e 1333 (1991)
.|+-+.
T Consensus 438 L~d~~~ 443 (450)
T 2y4t_A 438 LSDPEM 443 (450)
T ss_dssp SSGGGG
T ss_pred hCCHHH
Confidence 666444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.5e-15 Score=191.65 Aligned_cols=432 Identities=9% Similarity=-0.038 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 040435 773 VSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMY 852 (1991)
Q Consensus 773 ~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~y 852 (1991)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.+..+++... .+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 345555666666667777777776666543 23455666666666666666666666666665542 2333444444444
Q ss_pred hh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 040435 853 VD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVH 931 (1991)
Q Consensus 853 ak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~ 931 (1991)
.. |++++|...|+.+. .+....+..+..+...+...+|+..+.++... .|+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~---~~~~----------------------- 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSK---DEGR----------------------- 156 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh---Cccc-----------------------
Confidence 44 56666666554331 11112222333444445556666666666432 1100
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHh---HHHHHHHHHHh--------cCCHHHHHHHHHHH
Q 040435 932 GLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKV---SWNSALSGLVV--------NEKYSEALSLLYSM 1000 (1991)
Q Consensus 932 ~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~---s~n~LI~a~~~--------~g~~~eAl~lf~~M 1000 (1991)
.....|+. ..+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+|+++
T Consensus 157 ----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 157 ----GSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 01112222 2333445566667777777666554322 33333322222 24677788888777
Q ss_pred hcCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--Cchhh
Q 040435 1001 GKGVNEVDEI-TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--PDVVL 1077 (1991)
Q Consensus 1001 ~~~Gi~Pd~~-T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d~~s 1077 (1991)
... .|+.. .+..+ ..++..+...|...|++++|...|++..+ |+...
T Consensus 229 l~~--~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 278 (537)
T 3fp2_A 229 LSA--NTVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278 (537)
T ss_dssp HC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHH--CCCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchH
Confidence 653 23211 11100 11234455566777777888777777653 55667
Q ss_pred hhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 040435 1078 WSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1078 yn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k 1157 (1991)
|..+...|...|++++|+..|.++.+.. ..+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYK 356 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 7777778888888888888888877643 2345667777777888888888888888887764 3356788889999999
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc-----
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG-----LQPNAVTTLSVLSACSHG----- 1224 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G-----i~Pd~~T~~~LL~ac~~~----- 1224 (1991)
.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. ..-....+......+...
T Consensus 357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999998864 456789999999999999999999999987643 111122244445667777
Q ss_pred -----CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC
Q 040435 1225 -----GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1225 -----G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
|++++|..+|+.+.+. .| +...+..+..+|.+.|++++|.+.++++.+.
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999873 55 5788999999999999999999999998763
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-12 Score=168.37 Aligned_cols=549 Identities=11% Similarity=0.028 Sum_probs=365.9
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHhhcCC---------------CC----------------hHH------HHHHH
Q 040435 737 YESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC---------------RD----------------SVS------WNIMI 779 (1991)
Q Consensus 737 ~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~---------------~d----------------~~s------~n~LI 779 (1991)
+..|+.+....|.+.++.|++.+..++-.+-.. +| .+. ....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 567889999999999999999998888754310 11 111 12335
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHHhcCChHHHHHHHHHHHHhCCCCchHHHH
Q 040435 780 QGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLV-------------IQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQN 846 (1991)
Q Consensus 780 ~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~l-------------L~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~n 846 (1991)
.+|++.-++..+-.+...+...+ -++.....+ +..+-+.+++..-...++.-+..| ..+..++|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d--~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hn 877 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVD--CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHN 877 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcCC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 55555544444433333333221 122233333 333344445555555566666666 45788999
Q ss_pred HHHHHHhh--CCHHHHHH--------HHHhc-CCCCHHH----------HHHHHHHHHHcCChHHH-H------------
Q 040435 847 SVLSMYVD--ADMECARK--------LFDEM-CERDVIS----------WSVMIGGYVQSAEAFSG-L------------ 892 (1991)
Q Consensus 847 aLi~~yak--g~~e~A~~--------vf~~m-~~~d~~s----------yn~LI~a~~~~G~~~eA-l------------ 892 (1991)
+|...|.. .+.+.=+. +..+- .++|... --.||...-++|.+... .
T Consensus 878 alakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~ 957 (1630)
T 1xi4_A 878 ALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWG 957 (1630)
T ss_pred HHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHH
Confidence 99999886 34443111 11111 1122211 11233333333322211 1
Q ss_pred -----------HHHHHHHhC---CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc
Q 040435 893 -----------RLFRQMVSG---FKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG--LGCDLFVGNSLIDMYAKC 956 (1991)
Q Consensus 893 -----------~lf~~M~~~---~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g--~~pd~~v~naLI~~y~k~ 956 (1991)
++.++.... ....|+. ....++++...|...++.++++.++-.+ +.-+....+.|+.+..+.
T Consensus 958 ~vl~~~n~~RR~Lidqv~a~aL~e~~~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka 1035 (1630)
T 1xi4_A 958 SVLLESNPYRRPLIDQVVQTALSETQDPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA 1035 (1630)
T ss_pred HHhcCCcHHHHHHHHHHHHhhcccccCHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 122221110 0123333 3556777888888888888888887332 123456677777777776
Q ss_pred CChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 040435 957 KDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVIL 1036 (1991)
Q Consensus 957 G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~ 1036 (1991)
+..+.....++...-+ ...+...+...|.+++|..+|++... .......++. ..+++++|.++...+
T Consensus 1036 -D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1036 -DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC- 1102 (1630)
T ss_pred -ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-
Confidence 4455555555554323 34467778889999999999998621 1122233332 567788887776643
Q ss_pred HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1037 RRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINL 1116 (1991)
Q Consensus 1037 ~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~l 1116 (1991)
.+..+|..+..++.+.|++++|...|.+. .|...|..++..|.+.|++++|.+.|...++.. ++....+.+
T Consensus 1103 -----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1103 -----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred -----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 34778889999999999999999999765 567788889999999999999999998766643 333233358
Q ss_pred HHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHH
Q 040435 1117 LEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEAL 1196 (1991)
Q Consensus 1117 L~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl 1196 (1991)
..+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|+
T Consensus 1174 afaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHH
Confidence 88889988887544332 2 234455667889999999999999999986 58999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC
Q 040435 1197 ALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
+.+++. -+..+|..+-.+|...|.+..|..+... +.-+.+.+..++..|.+.|.+++|..+++.....
T Consensus 1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999876 3568899999999999999999887653 3346677889999999999999999999888653
Q ss_pred CCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCC-----CCchHHHHHHHHHHhCCCchhHHH
Q 040435 1277 LKATASAWGALLSACRSYG--NTELGAGATSRILELEA-----QNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1277 ~~pd~~~~~~Ll~a~~~~g--~~e~A~~~~e~llel~P-----~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
-+.....|.-|...+.+.. +..++.+.|..-..+.| +++..|--+.-+|.+.|.|+.|..
T Consensus 1310 eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3334557777777776653 67777777777777766 677788889999999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-13 Score=167.02 Aligned_cols=325 Identities=10% Similarity=-0.014 Sum_probs=213.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHH
Q 040435 973 NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLID 1052 (1991)
Q Consensus 973 dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~ 1052 (1991)
|+..|..+...+.+.|++++|+..|+++.... ..+..++..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667778888888888888888888876532 1123444444555555555555555555555442 123344444555
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C----chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccCh
Q 040435 1053 GYSKCHLVELAWKLFNDVKK--P----DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATEL 1126 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~--~----d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~l 1126 (1991)
+|.+.|++++|...|+++.+ | +...|..+...+ . ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 55555555555555554432 2 111121110000 0 00011113445566666
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMK 1203 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~ 1203 (1991)
+.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666553 23456677788888888888888888887764 366788888888888899999999888887
Q ss_pred HCCCCCCH-HHHH------------HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-H----HHHHHHHHHHHHcCCHHH
Q 040435 1204 LGGLQPNA-VTTL------------SVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-L----EHYSCMVDMLARAGELDI 1265 (1991)
Q Consensus 1204 ~~Gi~Pd~-~T~~------------~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~----~~y~~Li~~l~r~G~~ee 1265 (1991)
+. .|+. ..+. .+...+...|++++|.+.++.+.+. .|+ . ..+..+..++.+.|++++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 64 3432 2222 2255677889999999999988764 343 2 335567888889999999
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
|.+.++++.+..+.+..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999887654557888999999999999999999999999999999888887777765543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-11 Score=158.83 Aligned_cols=528 Identities=9% Similarity=0.016 Sum_probs=353.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhhcCC------CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040435 742 SIGNALMDFYMKWRFPDSAVAVFDDCIC------RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQ 815 (1991)
Q Consensus 742 ~~~n~Li~~y~k~G~~~~A~~lfd~m~~------~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~ 815 (1991)
.--...+..|...|.+.+|.++++++.- .+...-|.++..-.+. +..+..++..+.... ....+-.
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHH
Confidence 3346677888899999999999988742 2335566677666666 556666666654321 1334667
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 040435 816 ACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRL 894 (1991)
Q Consensus 816 a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~l 894 (1991)
.|...|.+++|.++++... ......+.++. . +++++|.++.++.. +..+|..+..++...|++++|++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7888999999999998752 11111222222 4 78999999988774 466888999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCH
Q 040435 895 FRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNK 974 (1991)
Q Consensus 895 f~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv 974 (1991)
|.+. -|...|..+..+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++.
T Consensus 1128 YiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1128 YIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 9653 356778889999999999999999998887755 44444556999999999988655443 45577
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHH
Q 040435 975 VSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGY 1054 (1991)
Q Consensus 975 ~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y 1054 (1991)
..|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+..+.+ .+..+|..+-.++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 77888889999999999999999985 47889999999999999998888765 4567888888888
Q ss_pred HhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhccChHHHHH
Q 040435 1055 SKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN---AITIINLLEACSVATELSSSKW 1131 (1991)
Q Consensus 1055 ~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd---~~T~~~lL~a~a~~g~le~a~~ 1131 (1991)
...|++..|......+. -+...+..++..|.+.|.+++|+.+++.-.. +.+. .+|....+.+-.+.+++.++.+
T Consensus 1261 ve~~Ef~LA~~cgl~Ii-v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhhhHHHHHHHHHHhhh-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999999988876532 2444566888999999999999999976653 3332 2233344444444445555444
Q ss_pred HHHHHHHhccc------cchhHHHHHHHHHHhcCCHHHHHHHH-------------Hhcc--CCCHhHHHHHHHHHHHcC
Q 040435 1132 AHGIAIRRCLA------EEVAVGTAVVDMYAKCGAIEASRKAF-------------DQIS--RKNIVSWSAMVAAYGMNG 1190 (1991)
Q Consensus 1132 i~~~~~k~g~~------~d~~v~naLI~~y~k~G~~e~A~~lf-------------~~m~--~~d~~s~n~LI~ay~~~G 1190 (1991)
.+.. +.+++ .+..+|..++-.|.+-|+++.|.... .+.. ..|+..|...+.-|....
T Consensus 1338 ~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1338 LFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4442 22222 35678889999999999999988322 2221 146677777777777665
Q ss_pred ---------------CHHHHHHHHHHHHHCCCCCCHHHHHHHH-------------HHHHhcCCHHHHHHHHHHhHHhc-
Q 040435 1191 ---------------LAHEALALVAEMKLGGLQPNAVTTLSVL-------------SACSHGGLVEEGLSFFNSMVQDH- 1241 (1991)
Q Consensus 1191 ---------------~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL-------------~ac~~~G~~e~A~~i~~~M~~~~- 1241 (1991)
+.+++.++|... |.-|-..-|..-+ ..+....+++.-+.-. +.+
T Consensus 1416 P~~lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si----~~~~ 1488 (1630)
T 1xi4_A 1416 PLLLNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSI----DAYD 1488 (1630)
T ss_pred hHHHHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHH----hhcc
Confidence 666666666521 1122222221111 1111111111110000 000
Q ss_pred CC---------C-CCHHHHHHHH-HHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1242 GV---------E-PALEHYSCMV-DMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1242 gi---------~-P~~~~y~~Li-~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
++ + -...-+..+. .+|.+.|++..|.++..+.. .|.-.+.+.+..|+.+.+++++.-..+.
T Consensus 1489 nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~--------l~~dAm~~a~~S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1489 NFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS--------LYKDAMQYASESKDTELAEELLQWFLQE 1560 (1630)
T ss_pred CcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc--------CHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 00 0 0111122233 34455589999998888765 3555677788889998888877776666
Q ss_pred CCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1311 EAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1311 ~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
.+...|+...-.|...=+-+.+.+
T Consensus 1561 --~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1561 --EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred --CChhHHHHHHHHHhccCCchHHHH
Confidence 556667777777777777666655
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-13 Score=166.05 Aligned_cols=289 Identities=11% Similarity=0.002 Sum_probs=237.1
Q ss_pred CCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1040 FESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINL 1116 (1991)
Q Consensus 1040 ~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~l 1116 (1991)
...+..++..+...+...|++++|.++|+++.+ .+...+..++..+.+.|+.++|+.+++++.+.. ..+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345666777788888888999999998888764 344566677788888899999999999888743 2245566777
Q ss_pred HHHHhhcc-ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCH
Q 040435 1117 LEACSVAT-ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLA 1192 (1991)
Q Consensus 1117 L~a~a~~g-~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~ 1192 (1991)
...+...| +.+.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77788888 8888998888888765 33567788899999999999999999998864 3467788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-------CCCHHHHHHHHHHHHHcCCHHH
Q 040435 1193 HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGV-------EPALEHYSCMVDMLARAGELDI 1265 (1991)
Q Consensus 1193 ~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi-------~P~~~~y~~Li~~l~r~G~~ee 1265 (1991)
++|++.|+++.+.. +.+...+..+...+...|++++|.++++.+.+...- ......+..+..+|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998753 446778888999999999999999999998764211 2346789999999999999999
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH-HhCCCc
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY-AAGGLW 1331 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly-a~~G~~ 1331 (1991)
|.+.++++.+..+.+..+|..+...+...|+.++|...++++++++|+++..+..++.+| ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999987655567889999999999999999999999999999999999999999988 455654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-13 Score=161.93 Aligned_cols=305 Identities=11% Similarity=-0.005 Sum_probs=226.8
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhh
Q 040435 1010 ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFT 1086 (1991)
Q Consensus 1010 ~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~ 1086 (1991)
..+..+-..+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555566667777777777777776654 23456666777777777777777777776653 24556677777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHH
Q 040435 1087 LCGRPREAIAVFQEMNQAQEKP---NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEA 1163 (1991)
Q Consensus 1087 ~~g~~eeAl~lf~~M~~~Gv~P---d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~ 1163 (1991)
+.|++++|+..|+++.+. .| +.......+. .+.. ......+...|...|++++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~------~~~~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV------KADE----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH------HHHH----------------HHHHHHHHHHHHHTTCHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH------HHHH----------------HHHHHHHHHHHHHccCHHH
Confidence 777777777777777653 34 2221111110 0000 0112334678889999999
Q ss_pred HHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1164 SRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1164 A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
|...|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++.+.+
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~- 216 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 216 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 9999998864 467889999999999999999999999999753 44677888999999999999999999999976
Q ss_pred cCCCCC-HHHHH------------HHHHHHHHcCCHHHHHHHHHHCccCCCCCHH----HHHHHHHHHHHcCChhHHHHH
Q 040435 1241 HGVEPA-LEHYS------------CMVDMLARAGELDIAIDLINQMPDNLKATAS----AWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1241 ~gi~P~-~~~y~------------~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~----~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
..|+ ...+. .+...+.+.|++++|.+.++++.+..+.+.. .|..+...+...|+.+.|...
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 --LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp --HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3454 33332 3367799999999999999998764344443 355677889999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1304 TSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1304 ~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
++++++++|+++..+..++.+|...|++++|....+...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988776544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-13 Score=165.02 Aligned_cols=281 Identities=9% Similarity=-0.043 Sum_probs=219.9
Q ss_pred HHhcCCHHHHHH-HHHhcCC-----C--chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccC
Q 040435 1054 YSKCHLVELAWK-LFNDVKK-----P--DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATE 1125 (1991)
Q Consensus 1054 y~k~G~l~~A~~-lf~~m~~-----~--d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~ 1125 (1991)
|.-.|++++|.. .|++..+ | +...|..+...|.+.|++++|+..|+++.+.. ..+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334567777777 7775443 1 34567788888888888888888888888753 3355677777788888888
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHH---------------HHHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSA---------------MVAAYG 1187 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~---------------LI~ay~ 1187 (1991)
++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888888765 34667788888999999999999999988764 2 2222221 233344
Q ss_pred HcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 040435 1188 MNGLAHEALALVAEMKLGGLQ-PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDI 1265 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~-Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~ee 1265 (1991)
..|++++|+..|+++.+.... ++..++..+...+...|++++|.++++.+++. .| +...|..+..+|.+.|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999875321 14788999999999999999999999999763 55 47899999999999999999
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHhCCCchhH
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN-----------SAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~-----------~~~yvlL~~lya~~G~~~ea 1334 (1991)
|.+.++++.+..+.+..+|..+..++...|+++.|...+++++++.|++ +..+..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999999876556678999999999999999999999999999999988 78899999999999999999
Q ss_pred HHHHH
Q 040435 1335 SGTRL 1339 (1991)
Q Consensus 1335 ~~vr~ 1339 (1991)
..+..
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-11 Score=159.04 Aligned_cols=394 Identities=9% Similarity=0.023 Sum_probs=243.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 040435 942 DLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--K-NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQI 1018 (1991)
Q Consensus 942 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a 1018 (1991)
+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 3444554554 2445555555555555433 2 3344555555555555555555555555442 2443333333321
Q ss_pred H-hccCChhhHHH----HHHHHHHh-cCCC-chhhhhhHHHHHHh---------cCCHHHHHHHHHhcCC-Cch---hhh
Q 040435 1019 C-KCFVHPMECKS----VHCVILRR-AFES-NELVLNSLIDGYSK---------CHLVELAWKLFNDVKK-PDV---VLW 1078 (1991)
Q Consensus 1019 ~-~~~g~~~~a~~----i~~~~~~~-g~~~-d~~v~naLI~~y~k---------~G~l~~A~~lf~~m~~-~d~---~sy 1078 (1991)
. ...++.+.+.+ ++..+++. |..+ +..+|...+....+ .|+++.|+.+|++..+ |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 1 22334444333 34333332 3322 33445554444433 5667777777776554 221 223
Q ss_pred hHHHHh---h----------hhcCChHHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHhh----cc
Q 040435 1079 STMIAG---F----------TLCGRPREAIAVFQEMN------QAQ---EKPNA--------ITIINLLEACSV----AT 1124 (1991)
Q Consensus 1079 n~LI~~---y----------~~~g~~eeAl~lf~~M~------~~G---v~Pd~--------~T~~~lL~a~a~----~g 1124 (1991)
...... + .+.+++.+|..++.++. +.. +.|+. ..|...+..... .+
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 221110 0 12445667777666532 111 23431 233333322211 12
Q ss_pred Ch----HHHHHHHHHHHHhccccchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhccC---C-CHhHHHHH
Q 040435 1125 EL----SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK-------CGAIE-------ASRKAFDQISR---K-NIVSWSAM 1182 (1991)
Q Consensus 1125 ~l----e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k-------~G~~e-------~A~~lf~~m~~---~-d~~s~n~L 1182 (1991)
+. +.+..+++.+++.. +.+..+|..+...+.+ .|+++ +|..+|++..+ | +...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22 35566777777753 4467778878887775 68887 89999998764 4 57889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHH-HH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDM-LA 1258 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~-l~ 1258 (1991)
+..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|+++|+..++ ..|. ...|...+.+ +.
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHH
Confidence 9999999999999999999998 45642 4788888888889999999999998875 3443 3334333322 34
Q ss_pred HcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch----HHHHHHHHHHhCCCchhH
Q 040435 1259 RAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA----GYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~----~yvlL~~lya~~G~~~ea 1334 (1991)
..|+.++|.++|++..+..+.+..+|..++......|+.+.|..+++++++..|.++. .+..........|+.+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6899999999999887655557899999999999999999999999999998776654 555567777888999999
Q ss_pred HHHHHHHHHc
Q 040435 1335 SGTRLLAKER 1344 (1991)
Q Consensus 1335 ~~vr~~m~~~ 1344 (1991)
..+...+.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.8e-13 Score=167.54 Aligned_cols=321 Identities=13% Similarity=0.050 Sum_probs=143.7
Q ss_pred hcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHH
Q 040435 955 KCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCV 1034 (1991)
Q Consensus 955 k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~ 1034 (1991)
+.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996664 8999999999999999999999653 5777899999999999999999997777
Q ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040435 1035 ILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITII 1114 (1991)
Q Consensus 1035 ~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~ 1114 (1991)
+++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7664 4557888899999999999999888775 377789999999999999999999999977 3688
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHH
Q 040435 1115 NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHE 1194 (1991)
Q Consensus 1115 ~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~e 1194 (1991)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ........++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8889999999999988888776 367888999999999999999987777655 333334468888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHHHcCCHHHH
Q 040435 1195 ALALVAEMKLGGLQPNAVTTLSVLSACS--HGGLVEEGLSFFNSMVQDHGVEP------ALEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1195 Al~lf~eM~~~Gi~Pd~~T~~~LL~ac~--~~G~~e~A~~i~~~M~~~~gi~P------~~~~y~~Li~~l~r~G~~eeA 1266 (1991)
|+.+++...... +--...|+.+--+++ +-+.+.+.++.|.. +-.+.| +..+|.-++-+|..-+.++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999998877433 223334554444444 44555556555542 223444 356788999999999999988
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
...+-+-+. +..--........+-.|.|.--++..=-++..|
T Consensus 302 ~~tm~~h~~----~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 302 IITMMNHPT----DAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHSTT----TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHhCCh----hhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 876655432 211122233333445555555444444444433
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-13 Score=163.62 Aligned_cols=281 Identities=10% Similarity=0.006 Sum_probs=119.5
Q ss_pred hcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 040435 753 KWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGY 832 (1991)
Q Consensus 753 k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~ 832 (1991)
++|++++|...+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7889999999999997765 9999999999999999999999753 6788999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHH
Q 040435 833 IIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSL 911 (1991)
Q Consensus 833 ~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~ 911 (1991)
..+. .+++.+.+.|+.+|++ |+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhH
Confidence 8774 4557889999999999 999999888864 78889999999999999999999999987 258
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHH
Q 040435 912 VSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYS 991 (1991)
Q Consensus 912 ~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~ 991 (1991)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ....-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88999999999999998888877 378899999999999999999988877765 33333446888899999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHH--HHHHhccCChhhHHHHHHHHHHhcCCC------chhhhhhHHHHHHhcCCHHHH
Q 040435 992 EALSLLYSMGKGVNEVDEITLVNI--LQICKCFVHPMECKSVHCVILRRAFES------NELVLNSLIDGYSKCHLVELA 1063 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~~T~~~l--L~a~~~~g~~~~a~~i~~~~~~~g~~~------d~~v~naLI~~y~k~G~l~~A 1063 (1991)
+|..+++...... .-....|+-+ +-+--+.+.+.+..+.|.. +.++++ +...|.-++-.|.+-++++.|
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 9999998876432 2223333333 3333333444444443321 112222 345666677777777777766
Q ss_pred HHH
Q 040435 1064 WKL 1066 (1991)
Q Consensus 1064 ~~l 1066 (1991)
...
T Consensus 302 ~~t 304 (449)
T 1b89_A 302 IIT 304 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-12 Score=154.84 Aligned_cols=261 Identities=10% Similarity=0.020 Sum_probs=224.0
Q ss_pred CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHH
Q 040435 1073 PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVV 1152 (1991)
Q Consensus 1073 ~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI 1152 (1991)
.+...+..+...+...|++++|+++|+++.+.. ..+...+..+...+...|+.+.|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455667788888999999999999999998753 2233455567778889999999999999998864 34677888899
Q ss_pred HHHHhcC-CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1153 DMYAKCG-AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1153 ~~y~k~G-~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
..|...| ++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998865 356789999999999999999999999998754 234566777888999999999
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCC---------CCCHHHHHHHHHHHHHcCChh
Q 040435 1229 EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNL---------KATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~---------~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
+|.++++.+.+ ..| +...+..+..+|.+.|++++|.+.++++.... +....+|..+...+...|+.+
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999875 455 57889999999999999999999999876421 445679999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+|...+++++++.|+++..+..++.+|...|++++|....+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999999999999999988766
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-11 Score=154.23 Aligned_cols=365 Identities=8% Similarity=-0.008 Sum_probs=260.6
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHhccCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHH
Q 040435 942 DLFVGNSLIDMYAK----CKDTDSAFKVFSEMPQ-KNKVSWNSALSGLVV----NEKYSEALSLLYSMGKGVNEVDEITL 1012 (1991)
Q Consensus 942 d~~v~naLI~~y~k----~G~~e~A~~lf~~m~~-~dv~s~n~LI~a~~~----~g~~~eAl~lf~~M~~~Gi~Pd~~T~ 1012 (1991)
+......|-.+|.. .++.++|...|+...+ .+...+..|-..|.. .++.++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44444455555555 5666666666654432 345555555555665 566666666666665543 33333
Q ss_pred HHHHHHHhc----cCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHh----cCCHHHHHHHHHhcCC-CchhhhhHHHH
Q 040435 1013 VNILQICKC----FVHPMECKSVHCVILRRAFESNELVLNSLIDGYSK----CHLVELAWKLFNDVKK-PDVVLWSTMIA 1083 (1991)
Q Consensus 1013 ~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k----~G~l~~A~~lf~~m~~-~d~~syn~LI~ 1083 (1991)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444 556666666666666654 34555666666665 6778888888876653 45667777777
Q ss_pred hhhh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----ccChHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 040435 1084 GFTL----CGRPREAIAVFQEMNQAQEKPNAITIINLLEACSV----ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMY 1155 (1991)
Q Consensus 1084 ~y~~----~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y 1155 (1991)
.|.+ .++.++|++.|++..+.| +...+..+-..+.. .++.++|...+....+.| +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7776 788888888888877754 44455555555554 678888888888877765 344566677778
Q ss_pred Hh----cCCHHHHHHHHHhccC-CCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040435 1156 AK----CGAIEASRKAFDQISR-KNIVSWSAMVAAYGMN-----GLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGG 1225 (1991)
Q Consensus 1156 ~k----~G~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~~-----G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G 1225 (1991)
.. .++.++|...|++..+ .+...+..|...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 8999999999998865 4667888888888887 89999999999999875 4556666766776656
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH----c
Q 040435 1226 ---LVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELDIAIDLINQMPDNLKATASAWGALLSACRS----Y 1294 (1991)
Q Consensus 1226 ---~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~ 1294 (1991)
+.++|.++|++..+. .+...+..|..+|.. .+++++|.+++++..+. .++..+..|...+.. .
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCC
Confidence 789999999998763 467888899999998 89999999999998763 367889999999988 8
Q ss_pred CChhHHHHHHHHHHhcCCC---CchHHHHHHHHHHh
Q 040435 1295 GNTELGAGATSRILELEAQ---NSAGYLLASSMYAA 1327 (1991)
Q Consensus 1295 g~~e~A~~~~e~llel~P~---~~~~yvlL~~lya~ 1327 (1991)
++.++|...++++++.+|+ ++.....|+.++..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999999954 77777777766654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-11 Score=156.77 Aligned_cols=419 Identities=8% Similarity=0.037 Sum_probs=264.5
Q ss_pred CchHHHHHHHHHHhh-CCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 040435 840 AVHSVQNSVLSMYVD-ADMECARKLFDEMCE--R-DVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVL 915 (1991)
Q Consensus 840 ~d~~v~naLi~~yak-g~~e~A~~vf~~m~~--~-d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL 915 (1991)
.+...|..++.. .+ |+++.|+.+|+++.+ | +...|...+..+.+.|+.++|..+|++.... .|+...+...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 356677777774 44 888888888888743 3 5667888888888888888888888888763 46666665555
Q ss_pred HHH-HccCChHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcC
Q 040435 916 KAC-TNLRDLTMGRM----VHGLVIYR-GLGC-DLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNE 988 (1991)
Q Consensus 916 ~a~-~~~g~~~~a~~----l~~~m~k~-g~~p-d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g 988 (1991)
... ...|+.+.|++ +++..++. |..| +..+|...+....+.... + .+.+.|
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~-------------~---------~~~~~~ 144 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV-------------G---------SYAENQ 144 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC-------------S---------STTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc-------------c---------cHHHHh
Confidence 432 34456655554 55544432 4333 344555555544331000 0 011245
Q ss_pred CHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHH
Q 040435 989 KYSEALSLLYSMGKGVNEVDE---ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWK 1065 (1991)
Q Consensus 989 ~~~eAl~lf~~M~~~Gi~Pd~---~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~ 1065 (1991)
++++|..+|++.... |+. ..|..........+. .+...++. .+.++++.|..
T Consensus 145 ~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~ 199 (530)
T 2ooe_A 145 RITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARR 199 (530)
T ss_dssp HHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHH
Confidence 555666666665541 221 111111110000000 00001110 01223334443
Q ss_pred HHHh-------cC------CCc--------hhhhhHHHHhhhhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1066 LFND-------VK------KPD--------VVLWSTMIAGFTLC----GRP----REAIAVFQEMNQAQEKPNAITIINL 1116 (1991)
Q Consensus 1066 lf~~-------m~------~~d--------~~syn~LI~~y~~~----g~~----eeAl~lf~~M~~~Gv~Pd~~T~~~l 1116 (1991)
++.. +. .|+ ...|...+.....+ ++. ++|+.+|++..... .-+...|...
T Consensus 200 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~ 278 (530)
T 2ooe_A 200 VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEA 278 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3332 11 011 23455544332221 222 36777888877641 2244555555
Q ss_pred HHHHhh-------ccChH-------HHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CH-hH
Q 040435 1117 LEACSV-------ATELS-------SSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NI-VS 1178 (1991)
Q Consensus 1117 L~a~a~-------~g~le-------~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~-~s 1178 (1991)
...+.. .|+++ .|..++..+++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 358 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHH
Confidence 555543 68876 7888888887643455688899999999999999999999998864 4 33 58
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA-CSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDM 1256 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a-c~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~ 1256 (1991)
|..++..+.+.|+.++|.++|++..+.. +.+...|...... +...|+.++|..+|+..++. .| +...|..+++.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHH
Confidence 9999999999999999999999998753 2223333332222 33689999999999999874 45 57889999999
Q ss_pred HHHcCCHHHHHHHHHHCccCC--CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1257 LARAGELDIAIDLINQMPDNL--KA--TASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~~--~p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
+.+.|+.++|..++++..... .| ...+|...+.....+|+.+.+..+.+++++..|++
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999999999999999987632 22 25599999999999999999999999999998853
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-12 Score=153.76 Aligned_cols=242 Identities=11% Similarity=0.055 Sum_probs=175.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHH
Q 040435 1050 LIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSS 1129 (1991)
Q Consensus 1050 LI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a 1129 (1991)
+..+|...|+++.|...++....|+..++..+...|...|+.++|++.++++...+..|+
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-------------------- 99 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-------------------- 99 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS--------------------
T ss_pred HHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC--------------------
Confidence 344555555555555544443334444455555555555555555555555554443343
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040435 1130 KWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP 1209 (1991)
Q Consensus 1130 ~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P 1209 (1991)
+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .|
T Consensus 100 --------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 100 --------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred --------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 333445566778889999999999998 467889999999999999999999999999885 46
Q ss_pred CHHHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH
Q 040435 1210 NAVTT---LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA 1286 (1991)
Q Consensus 1210 d~~T~---~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~ 1286 (1991)
+.... .+.+..+...|++++|..+|+++++. ...+...+..+..++.+.|++++|.+.++++.+..+.++.+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 64321 12233344568999999999999875 33468899999999999999999999999987755668899999
Q ss_pred HHHHHHHcCChhH-HHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1287 LLSACRSYGNTEL-GAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~-A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
++..+...|+.++ +.+.++++++++|+++... .++.+.+.++++.
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLV 285 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHH
Confidence 9999999998865 6789999999999988643 4566666666544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=161.44 Aligned_cols=261 Identities=10% Similarity=-0.051 Sum_probs=207.1
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
+...|..+...+.+.|++++|+.+|+++.+.. ..+..++..+...+...|+++.|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45567777888888888888888888887653 2356677777778888888888888888887764 345677888888
Q ss_pred HHHhcCCHHHHHHHHHhccC--CC-----------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--KN-----------IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-PNAVTTLSVLS 1219 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~d-----------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-Pd~~T~~~LL~ 1219 (1991)
.|.+.|++++|...|+++.+ |+ ...+..+...|...|++++|+++|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988764 21 223344578889999999999999999885421 15788999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+...|++++|.++++.+++. .| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+.+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999873 45 57899999999999999999999999987755567899999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1299 LGAGATSRILELEAQ------------NSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~------------~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+|...+++++++.|+ +...+..|+.+|...|+.+.+..+..
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999987 36678899999999999988877654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-14 Score=183.07 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=114.9
Q ss_pred hccccchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040435 1139 RCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS-------RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA 1211 (1991)
Q Consensus 1139 ~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~-------~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~ 1211 (1991)
.....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.
T Consensus 121 ~~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred hHHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 3445566799999999999999999999998764 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040435 1212 VTTLSVLSACSHGGL-VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDL 1269 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~-~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l 1269 (1991)
+||++||.++++.|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999999997 5889999999965 59999999999999888887555544444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-12 Score=151.73 Aligned_cols=253 Identities=11% Similarity=-0.047 Sum_probs=178.2
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA 1160 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~ 1160 (1991)
+...+...|++++|+.+|+++.+.. ..+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 3334444444444444444443321 1123333333444444444444444444444432 2234455556666677777
Q ss_pred HHHHHHHHHhccC--C-CHhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1161 IEASRKAFDQISR--K-NIVSWSAM--------------VA-AYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~--~-d~~s~n~L--------------I~-ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
+++|...|+++.+ | +...+..+ .. .+...|++++|++.++++.+.. +.+...+..+...+.
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 7777777766543 1 22222222 22 3677889999999999998754 346778888999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
..|++++|.++++.+.+. .| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|.
T Consensus 184 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999998763 45 57889999999999999999999999987655567899999999999999999999
Q ss_pred HHHHHHHhcCCC------------CchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1302 GATSRILELEAQ------------NSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1302 ~~~e~llel~P~------------~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..+++++++.|+ ++..+..++.+|...|++++|..+.+
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999 78899999999999999999988654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-12 Score=156.28 Aligned_cols=301 Identities=10% Similarity=0.012 Sum_probs=200.2
Q ss_pred HHHhcCCHHHHHH-HHHHHhcCCC-CC--CHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Q 040435 983 GLVVNEKYSEALS-LLYSMGKGVN-EV--DEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCH 1058 (1991)
Q Consensus 983 a~~~~g~~~eAl~-lf~~M~~~Gi-~P--d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G 1058 (1991)
++...|++++|+. .|.+...... .| +...+..+-..+...|++++|...+..+++.. +.+..++..+...|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4556678888887 7776543211 11 23445566666677777777777777777654 335566667777777777
Q ss_pred CHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHH
Q 040435 1059 LVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGI 1135 (1991)
Q Consensus 1059 ~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~ 1135 (1991)
++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.......+ +.....
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~~------ 178 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAGG------ 178 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhhh------
Confidence 77777777776543 355667777777777777777777777776642 3222110000 000000
Q ss_pred HHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 040435 1136 AIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K---NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN 1210 (1991)
Q Consensus 1136 ~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~---d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd 1210 (1991)
..+ ......+...+ +.|++++|...|+++.+ | +...|..+...|.+.|++++|+..|+++.+.. +.+
T Consensus 179 -----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 -----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred -----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000 00111222333 78899999999998764 3 47789999999999999999999999988753 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC---------
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--------- 1280 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--------- 1280 (1991)
..++..+...+...|++++|.++++.+++ +.| +...+..+..+|.+.|++++|.+.++++....+.+
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 77888899999999999999999999876 355 47889999999999999999999999886532222
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1281 --ASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1281 --~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
..+|..|..++...|+.+.|..++++.++
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 78999999999999999999998876655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-13 Score=180.53 Aligned_cols=134 Identities=11% Similarity=0.009 Sum_probs=116.6
Q ss_pred HhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcC-------CCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 040435 734 KQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCI-------CRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPN 806 (1991)
Q Consensus 734 k~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~-------~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd 806 (1991)
+.....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||
T Consensus 120 ~~~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred hhHHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 34455566899999999999999999999997763 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCh-HHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhc
Q 040435 807 NSILVLVIQACRCLGAY-YEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEM 867 (1991)
Q Consensus 807 ~~ty~~lL~a~~~~g~~-~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m 867 (1991)
.+||+++|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+ +-++..++++..+
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999999985 7899999999999999999999999987776 3444444444444
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-09 Score=140.61 Aligned_cols=352 Identities=11% Similarity=-0.056 Sum_probs=290.6
Q ss_pred CCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHhcCCC
Q 040435 971 QKNKVSWNSALSGLVV----NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKC----FVHPMECKSVHCVILRRAFES 1042 (1991)
Q Consensus 971 ~~dv~s~n~LI~a~~~----~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~ 1042 (1991)
..+..++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...+..+.+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467777778888888 899999999999998764 45556666666666 889999999999998876
Q ss_pred chhhhhhHHHHHHh----cCCHHHHHHHHHhcCC-CchhhhhHHHHhhhh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1043 NELVLNSLIDGYSK----CHLVELAWKLFNDVKK-PDVVLWSTMIAGFTL----CGRPREAIAVFQEMNQAQEKPNAITI 1113 (1991)
Q Consensus 1043 d~~v~naLI~~y~k----~G~l~~A~~lf~~m~~-~d~~syn~LI~~y~~----~g~~eeAl~lf~~M~~~Gv~Pd~~T~ 1113 (1991)
+...+..|-.+|.. .++.++|.+.|++..+ .+..++..|...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778888888 8899999999998765 466678888888877 789999999999998875 56666
Q ss_pred HHHHHHHhh----ccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCHhHHHHHHH
Q 040435 1114 INLLEACSV----ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK----CGAIEASRKAFDQISR-KNIVSWSAMVA 1184 (1991)
Q Consensus 1114 ~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k----~G~~e~A~~lf~~m~~-~d~~s~n~LI~ 1184 (1991)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+...+..|..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666667766 789999999999998876 45677788888887 8899999999998765 46677888888
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1185 AYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG-----GLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1185 ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~-----G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
.|.. .++.++|+++|++..+.| +...+..+...+... ++.++|.++++...+. -+...+..|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8888 899999999999998765 455666777777776 8999999999998753 24567888888
Q ss_pred HHHHcC---CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh-
Q 040435 1256 MLARAG---ELDIAIDLINQMPDNLKATASAWGALLSACRS----YGNTELGAGATSRILELEAQNSAGYLLASSMYAA- 1327 (1991)
Q Consensus 1256 ~l~r~G---~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~- 1327 (1991)
+|.+.| ++++|.+++++..+. .++..+..|...+.. .++.++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 888877 889999999998763 578899999999998 899999999999998864 68889999999998
Q ss_pred ---CCCchhHHHHHHHHHHcC
Q 040435 1328 ---GGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1328 ---~G~~~ea~~vr~~m~~~g 1345 (1991)
.++.++|......-.+.|
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 899999998777655554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=153.38 Aligned_cols=230 Identities=14% Similarity=0.041 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHH
Q 040435 1110 AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAY 1186 (1991)
Q Consensus 1110 ~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay 1186 (1991)
...+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3446777788899999999999999999875 44678899999999999999999999998864 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1187 GMNGLAHEALALVAEMKLGGLQPNA-----------VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~Gi~Pd~-----------~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
...|++++|+..|+++.+. .|+. ..+..+...+...|++++|.++++++++...-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999873 3432 22334567888999999999999999875322225889999999
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
+|.+.|++++|.+.++++.+..+.+..+|..+..++...|++++|+..+++++++.|+++..+..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999887556689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 040435 1336 GTRLLAK 1342 (1991)
Q Consensus 1336 ~vr~~m~ 1342 (1991)
...+...
T Consensus 302 ~~~~~al 308 (365)
T 4eqf_A 302 SNFLTAL 308 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-11 Score=148.20 Aligned_cols=192 Identities=13% Similarity=0.037 Sum_probs=160.5
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040435 1142 AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLS 1216 (1991)
Q Consensus 1142 ~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~ 1216 (1991)
+++......+...|.+.|+.++|.+.++++.. | +...+..+...|.+.|++++|++.+++ ..+...+..
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~ 135 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAM 135 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHH
Confidence 34555667788888999999999999998742 4 456777788999999999999999987 467788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPALEH---YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~---y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
+...+.+.|+.++|.+.++.+.+. .|+... ..+++..+...|++++|..+++++.+..+.+..+|..+..++..
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999874 566321 22344555556999999999999988677889999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhH-HHHHHHHH
Q 040435 1294 YGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVES-SGTRLLAK 1342 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea-~~vr~~m~ 1342 (1991)
.|++++|+..++++++++|+++.++..++.++...|+++++ ....+.+.
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999874 45654443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.1e-11 Score=150.09 Aligned_cols=381 Identities=8% Similarity=-0.094 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHhcCChHHHHHHhccCCC--------
Q 040435 908 GQSLVSVLKACTNLRDLTMGRMVHGLVIYR-----G--LGC-DLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ-------- 971 (1991)
Q Consensus 908 ~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~-----g--~~p-d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-------- 971 (1991)
...|+.+-..+...|+.++|.+.+...++. + ..| ...+|+.+..+|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777778888888777766542 1 122 345677777777778887777776655421
Q ss_pred ---CCHhHHHHHHHHHHhc--CCHHHHHHHHHHHhcCCCCCCHH-HHHHHHH---HHhccCChhhHHHHHHHHHHhcCCC
Q 040435 972 ---KNKVSWNSALSGLVVN--EKYSEALSLLYSMGKGVNEVDEI-TLVNILQ---ICKCFVHPMECKSVHCVILRRAFES 1042 (1991)
Q Consensus 972 ---~dv~s~n~LI~a~~~~--g~~~eAl~lf~~M~~~Gi~Pd~~-T~~~lL~---a~~~~g~~~~a~~i~~~~~~~g~~~ 1042 (1991)
....+++.+..++... +++++|+..|++... +.|+.. .+..+.. .....++.+.+.+.+..+++... .
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~--~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE--KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 1234455444444443 457777777777655 344432 2222222 23345666667777766666542 2
Q ss_pred chhhhhhHHHHHH----hcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 040435 1043 NELVLNSLIDGYS----KCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI-TII 1114 (1991)
Q Consensus 1043 d~~v~naLI~~y~----k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-T~~ 1114 (1991)
+..++..+...+. ..|+.++|.+.+++..+ .+...|+.+...|.+.|++++|+..|.+..+. .|+.. ++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 3344444433333 34556677777766542 34556677777777777777777777776653 34332 222
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC
Q 040435 1115 NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1115 ~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~ 1191 (1991)
.+-..+...+... .. .....+.......+..+.|...|+...+ .+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MN-------LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HH-------C------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh---------hh-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 2222221110000 00 0000001111112234556666665542 344567777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAV--TTLSVLS-ACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAID 1268 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~--T~~~LL~-ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~ 1268 (1991)
+++|++.|++..+....|... .+..+.. ...+.|+.++|++.|.+.++ +.|+.....- ..+.+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHHH
Confidence 777777777776643222211 1111111 23456777777777776654 5555322211 1223333
Q ss_pred HHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1269 LINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1269 l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
++++.....+.++.+|..|...+...|+.++|...++++++++|.+|.+..-+
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 44433332344566777777777777777777777777777777666654433
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=147.23 Aligned_cols=271 Identities=13% Similarity=0.050 Sum_probs=166.7
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCC
Q 040435 1014 NILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGR 1090 (1991)
Q Consensus 1014 ~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~ 1090 (1991)
.....+...|++++|..++..+++.. +.+...+..+...|.+.|++++|...|+++.+ .+...|..+...|...|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 33344444555555555555554433 12334444455555555555555555554432 233444445555555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhhccChHHHHHHHHHHHHhccccchhHHHHH-HH-HHHhcCCHHHHHHH
Q 040435 1091 PREAIAVFQEMNQAQEKPNAITIINLL-EACSVATELSSSKWAHGIAIRRCLAEEVAVGTAV-VD-MYAKCGAIEASRKA 1167 (1991)
Q Consensus 1091 ~eeAl~lf~~M~~~Gv~Pd~~T~~~lL-~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naL-I~-~y~k~G~~e~A~~l 1167 (1991)
+++|++.|+++.+. .|+.......+ ..+ ++......+ .. .|...|++++|...
T Consensus 105 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 105 ANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 55555555554442 12111110000 000 000000011 12 26667788888888
Q ss_pred HHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 040435 1168 FDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVE 1244 (1991)
Q Consensus 1168 f~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~ 1244 (1991)
|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|.++++++.+. .
T Consensus 161 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~ 236 (327)
T 3cv0_A 161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI---N 236 (327)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C
Confidence 887753 356788888888888999999999998887643 335677888888888899999999999888763 4
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1245 P-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA------------TASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1245 P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p------------d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
| +...+..+..+|.+.|++++|.+.++++....+. +..+|..+..++...|+.+.|..+++++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 4 4678888888999999999999998887653222 46788888889999999999998888777655
Q ss_pred CC
Q 040435 1312 AQ 1313 (1991)
Q Consensus 1312 P~ 1313 (1991)
|+
T Consensus 317 ~~ 318 (327)
T 3cv0_A 317 AK 318 (327)
T ss_dssp HH
T ss_pred ch
Confidence 43
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-10 Score=144.02 Aligned_cols=358 Identities=11% Similarity=0.009 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhccCC------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH
Q 040435 943 LFVGNSLIDMYAKCKDTDSAFKVFSEMP------------QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEI 1010 (1991)
Q Consensus 943 ~~v~naLI~~y~k~G~~e~A~~lf~~m~------------~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~ 1010 (1991)
...||.|-..|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 4567777777777777777777665431 1234566666666666666666666666543200
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhc--CCHHHHHHHHHhcCC--Cc-hhhhhHHHHh-
Q 040435 1011 TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKC--HLVELAWKLFNDVKK--PD-VVLWSTMIAG- 1084 (1991)
Q Consensus 1011 T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~--G~l~~A~~lf~~m~~--~d-~~syn~LI~~- 1084 (1991)
...... .......+++.+..++.+. +++++|...|++..+ |+ ...+..+...
T Consensus 125 ------~~~~~~----------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 125 ------EKFSSP----------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp ------HHSCCS----------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ------Hhcccc----------------cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000000 0001122333333334333 356777777776553 33 3334333333
Q ss_pred --hhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh----ccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 040435 1085 --FTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSV----ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1085 --y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k 1157 (1991)
+...++.++|++.|++..+. .|+ ...+..+...+.. .++.+.|.+.+..+.+.. +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 33456667777777776653 343 3334333333332 356667777777766654 3345667778888888
Q ss_pred cCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040435 1158 CGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMN-------------------GLAHEALALVAEMKLGGLQPNAVTTL 1215 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~-------------------G~~~eAl~lf~eM~~~Gi~Pd~~T~~ 1215 (1991)
.|++++|...|++..+ | +..+|..+...|... +..++|+..|++..+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 8888888888887654 3 445666665555322 23677888888877643 23345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH----HHHHHHH-HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1216 SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALE----HYSCMVD-MLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1216 ~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~----~y~~Li~-~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
.+...+...|++++|.++|++.++ +.|+.. .+..+.. .+...|+.++|++.+++..+ +.|+...+...
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-i~~~~~~~~~~--- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-INQKSREKEKM--- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-SCCCCHHHHHH---
T ss_pred hHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCcccHHHHHH---
Confidence 788889999999999999998876 455432 2333333 23467899999999998876 45554433332
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcC
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~g 1345 (1991)
...++.++++.++.+|+++.+|..|+.+|...|++++|....+.--+.|
T Consensus 412 ------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 ------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp ------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455677888999999999999999999999999999998766443333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-10 Score=135.24 Aligned_cols=221 Identities=12% Similarity=0.004 Sum_probs=108.9
Q ss_pred hhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccc------hhHHHH
Q 040435 1077 LWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEE------VAVGTA 1150 (1991)
Q Consensus 1077 syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d------~~v~na 1150 (1991)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+++...... ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555556666666666666666665544 4444444444444555555555544444443321110 344444
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLV 1227 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~ 1227 (1991)
+...|.+.|++++|...|+++.+ |+ ...+...|++++|+..++++... .| +...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 55555555555555555554433 22 12233444555555555555442 22 223344444445555555
Q ss_pred HHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
++|.+.++.+++. .| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+.+.|...+++
T Consensus 156 ~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555555442 22 3444555555555555555555555554443333445555555555555555555555555
Q ss_pred HHhcC
Q 040435 1307 ILELE 1311 (1991)
Q Consensus 1307 llel~ 1311 (1991)
++++.
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 55555
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.9e-10 Score=131.74 Aligned_cols=217 Identities=11% Similarity=-0.006 Sum_probs=191.1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C-------HhHHH
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-N-------IVSWS 1180 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d-------~~s~n 1180 (1991)
..+..+-..+...|+++.|...+..+++.. .+..++..+...|.+.|++++|...|++..+ | + ...|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 355666777889999999999999999988 7888999999999999999999999998764 2 1 57899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH
Q 040435 1181 AMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLAR 1259 (1991)
Q Consensus 1181 ~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r 1259 (1991)
.+...|...|++++|++.|+++.+ +.|+. ..+...|++++|.+.++.+.+ ..| +...+..+...+.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHH
Confidence 999999999999999999999987 34664 345667889999999999876 455 46788899999999
Q ss_pred cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1260 AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.|++++|.+.++++.+..+.+..+|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|....+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999775566789999999999999999999999999999999999999999999999999999998665
Q ss_pred HH
Q 040435 1340 LA 1341 (1991)
Q Consensus 1340 ~m 1341 (1991)
..
T Consensus 232 ~a 233 (258)
T 3uq3_A 232 AA 233 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=132.76 Aligned_cols=193 Identities=16% Similarity=0.029 Sum_probs=160.3
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1142 AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL 1218 (1991)
Q Consensus 1142 ~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL 1218 (1991)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34566777888899999999999999998765 367889999999999999999999999998743 23566788888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH
Q 040435 1219 SACSHG-----------GLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA 1286 (1991)
Q Consensus 1219 ~ac~~~-----------G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~ 1286 (1991)
.++... |++++|...+++.++ +.|+ ...+..+..+|.+.|++++|.+.++++.+.. .+...|..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 888899 999999999999987 5774 7889999999999999999999999987744 78999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+..++...|+.++|...++++++++|+++..+..++.+|...|++++|....+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-09 Score=122.59 Aligned_cols=198 Identities=11% Similarity=0.017 Sum_probs=138.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344556666777777777777777776553 345677777777777777777777777776643 2355666677777
Q ss_pred HHhc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1221 CSHG-GLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1221 c~~~-G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
+... |++++|.++++.+.+ .+..|+ ...+..+..++.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777765 233343 4567777777777777777777777766544445677777777777777777
Q ss_pred HHHHHHHHHHhcCC-CCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1299 LGAGATSRILELEA-QNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1299 ~A~~~~e~llel~P-~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
.|...++++++..| .++..+..++.+|...|+.+++....+.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 7777777777777777777777776665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-10 Score=132.86 Aligned_cols=243 Identities=9% Similarity=-0.033 Sum_probs=181.3
Q ss_pred hhhcCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCH
Q 040435 1085 FTLCGRPREAIAVFQEMNQAQEK--P-NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAI 1161 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~Gv~--P-d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~ 1161 (1991)
+...|++++|+..|+++.+.... | +..++..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34456667777777776654221 1 23455556666667777777777777666654 23566778888899999999
Q ss_pred HHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1162 EASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1162 e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|..+++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998764 36788999999999999999999999999874 5665555556666678899999999998887
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1239 QDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA-----TASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1239 ~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p-----d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.. ..++...+. ++..+...++.++|.+.++++... .| +..+|..+...+...|+.+.|...++++++++|+
T Consensus 172 ~~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 172 EK--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATD-NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HH--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hc--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc-cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 64 333444443 777788888999999999988653 22 2578999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHhCCCchhHHHH
Q 040435 1314 NSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1314 ~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
+...+ +.++...|++++|...
T Consensus 248 ~~~~~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 248 NFVEH---RYALLELSLLGQDQDD 268 (275)
T ss_dssp TCHHH---HHHHHHHHHHHHC---
T ss_pred hHHHH---HHHHHHHHHHHhhHHH
Confidence 75544 5677778888776543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-09 Score=123.06 Aligned_cols=207 Identities=10% Similarity=0.024 Sum_probs=149.0
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDM 1154 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~ 1154 (1991)
...|..+...|...|++++|++.|+++.+.. | .+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 4556666666777777777777776665431 1 123344556666
Q ss_pred HHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A 1230 (1991)
|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+++|+++.+.+..| +...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 6777777777777776543 356677778888888888888888888887643445 345666777778888888888
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1231 LSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.++++.+.+. .| +...+..+..+|.+.|++++|.+.++++.+..+.+...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888887663 34 4677888888888888888888888887765556777888888888888888888888888888
Q ss_pred cCCCCchHHHH
Q 040435 1310 LEAQNSAGYLL 1320 (1991)
Q Consensus 1310 l~P~~~~~yvl 1320 (1991)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 88887765443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-09 Score=125.91 Aligned_cols=198 Identities=10% Similarity=-0.077 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSAC 1221 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac 1221 (1991)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677888899999999999999998764 467889999999999999999999999998754 33677888888999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
...|++++|.++++.+.+ .+..| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999865 33556 4678889999999999999999999998765556789999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
...++++++..|.++..+..++.+|...|++++|....+.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887766544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-10 Score=127.49 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=138.7
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
....|..+...+.+.|++++|+..|+++.+. .|+ +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHH
Confidence 3445666666666677777777777666542 121 2233444555
Q ss_pred HHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A 1230 (1991)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 66666777777777766543 356677777788888888888888888877643 33566677777778888888888
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1231 LSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
.++++.+.+. ...+...+..+..++.+.|++++|.+.++++....+.+..+|..+..++...|+.+.|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888887663 22256778888888888888888888888876644556778888888888888888888888888888
Q ss_pred CCCCchHHHHHHHHHHhC
Q 040435 1311 EAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1311 ~P~~~~~yvlL~~lya~~ 1328 (1991)
+|+++..+..++.+....
T Consensus 223 ~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp CTTCHHHHHHHTC-----
T ss_pred CcchHHHHHHHHHHHhhc
Confidence 888888777766555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.2e-09 Score=118.39 Aligned_cols=209 Identities=10% Similarity=0.044 Sum_probs=164.6
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
+...|..+...|...|++++|++.|+++.+.. | .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 34456666666666777777777766665431 2 12335566677
Q ss_pred HHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMN-GLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~-G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e 1228 (1991)
.|...|++++|...|+++.+ .+...|..+...|... |++++|+..++++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 77788888888888887653 3667888899999999 999999999999987433444 567788888899999999
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLK-ATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
+|.++++.+.+. .| +...+..+..++.+.|++++|.+.++++.+..+ .+...|..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999998763 45 478899999999999999999999999876445 6788888888888999999999999999
Q ss_pred HHhcCCCCchHHHHH
Q 040435 1307 ILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1307 llel~P~~~~~yvlL 1321 (1991)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999998876655
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=125.49 Aligned_cols=197 Identities=10% Similarity=0.057 Sum_probs=157.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445666777888899999999999998864 367889999999999999999999999998753 3467788888899
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+...|++++|.++++.+.+. ...+...+..+..++.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999774 2235788999999999999999999999998775566789999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
...++++++..|+++..+..++.+|...|++++|....+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999987765543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-09 Score=128.96 Aligned_cols=245 Identities=10% Similarity=-0.019 Sum_probs=158.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcc
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVAT 1124 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g 1124 (1991)
..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.+-.|+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------- 72 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA-------------- 72 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH--------------
Confidence 3444555666666666666665542 23335556666666666666666666665542211111
Q ss_pred ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1125 ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1125 ~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~e 1201 (1991)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++
T Consensus 73 -------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 73 -------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred -------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 112345566677777777777777776653 3456777888888888888888888887
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHCccC
Q 040435 1202 MKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGE---LDIAIDLINQMPDN 1276 (1991)
Q Consensus 1202 M~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~---~eeA~~l~~~m~~~ 1276 (1991)
..+. .| +...+..+...+...+++++|.+.|+.+++ +.|+ ...+..+..++...|+ +++|...++++.+.
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 7654 34 344455554245555688888888888876 4554 6677777777877777 66677777666431
Q ss_pred --CCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1277 --LKAT------ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1277 --~~pd------~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
..|+ ..+|..|...+...|+.+.|...++++++++|+++.+.-.+..+....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 1122 25788889999999999999999999999999999888877776655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-09 Score=131.49 Aligned_cols=246 Identities=9% Similarity=0.004 Sum_probs=193.2
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccC-hHHHHHHHHHHHHhccccchhHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATE-LSSSKWAHGIAIRRCLAEEVAVGTAVV 1152 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~-le~a~~i~~~~~k~g~~~d~~v~naLI 1152 (1991)
...|+.+...+.+.|++++|++.|++..+. .|+ ...|..+-.++...|+ ++.|...+..+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345666667777777777777777777663 443 4455666666677775 777777777777765 33566788888
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 040435 1153 DMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH-GGLVE 1228 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~-~G~~e 1228 (1991)
..|.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 889999999999999998864 477899999999999999999999999999853 2356778888888888 66657
Q ss_pred HH-----HHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC-----
Q 040435 1229 EG-----LSFFNSMVQDHGVEPA-LEHYSCMVDMLARAG--ELDIAIDLINQMPDNLKATASAWGALLSACRSYG----- 1295 (1991)
Q Consensus 1229 ~A-----~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G--~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g----- 1295 (1991)
+| ++.+++.++ +.|+ ...|..+..+|.+.| ++++|.++++++ +..+.+..++..|...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 77 588888876 6774 678888899999988 689999999988 445667889999999998874
Q ss_pred ---C-hhHHHHHHHHH-HhcCCCCchHHHHHHHHHHhC
Q 040435 1296 ---N-TELGAGATSRI-LELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1296 ---~-~e~A~~~~e~l-lel~P~~~~~yvlL~~lya~~ 1328 (1991)
+ .++|..+++++ .+++|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 999999999898887766543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-07 Score=117.86 Aligned_cols=448 Identities=9% Similarity=-0.009 Sum_probs=259.6
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhC
Q 040435 829 VHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCE---RDVISWSVMIGGYVQSAE---AFSGLRLFRQMVSG 901 (1991)
Q Consensus 829 l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~---~~eAl~lf~~M~~~ 901 (1991)
.++..+... ..|...|..++..+.+ +.++.|+.+|+++.. .....|...+..-.+.|. .+.+..+|++....
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 344444444 3477788888887776 778888888887732 355677777777777777 88888888887764
Q ss_pred CCCCCCHHHHHHHHHHHHccCCh--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHh---------cCChHH
Q 040435 902 FKNEPDGQSLVSVLKACTNLRDL--------TMGRMVHGLVIY-RGL-GCD-LFVGNSLIDMYAK---------CKDTDS 961 (1991)
Q Consensus 902 ~gv~Pd~~T~~~lL~a~~~~g~~--------~~a~~l~~~m~k-~g~-~pd-~~v~naLI~~y~k---------~G~~e~ 961 (1991)
....|+...|..-+.-..+.++. +..+++|+.++. .|. .++ ..+|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 11236776666666655544443 223355555443 244 443 3456655554332 123344
Q ss_pred HHHHhccCCC-C--CH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHH
Q 040435 962 AFKVFSEMPQ-K--NK-VSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILR 1037 (1991)
Q Consensus 962 A~~lf~~m~~-~--dv-~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~ 1037 (1991)
++++|++... | +. ..|..... +.+.-+...+..++.+. ..+++.|+..+..+..
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~ 270 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSLYQDWLN 270 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHHHHHHHH
Confidence 4444444332 1 00 11111000 00000000000000000 0011122222222111
Q ss_pred h--cCCCc----hhhhhhHHHHHHhcC-CHHHHHHHHHhcCCCchhhhhHHHHhhhhcC-------ChHHHHHHHHHHHH
Q 040435 1038 R--AFESN----ELVLNSLIDGYSKCH-LVELAWKLFNDVKKPDVVLWSTMIAGFTLCG-------RPREAIAVFQEMNQ 1103 (1991)
Q Consensus 1038 ~--g~~~d----~~v~naLI~~y~k~G-~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g-------~~eeAl~lf~~M~~ 1103 (1991)
. ++... ....+ +...-..+ .... -+..|...|.---.++ ..+.+..+|++...
T Consensus 271 ~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~-----------ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 271 ITKGLKRNLPITLNQAT--ESNLPKPNEYDVQ-----------QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp HTTTCCCCCCSSSTTCC--TTTSCCTTCCCHH-----------HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhccccccccch--hccCCCCchhHHH-----------HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 0 11000 00000 00000000 0000 0123444443222222 12345566777665
Q ss_pred CCCCCCHHHHHHHHHHHhhccChHHHH-HHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---------
Q 040435 1104 AQEKPNAITIINLLEACSVATELSSSK-WAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--------- 1173 (1991)
Q Consensus 1104 ~Gv~Pd~~T~~~lL~a~a~~g~le~a~-~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--------- 1173 (1991)
. +.-+...|.....-+...|+.+.|. .+++.+++.. +.+..++-.++..+-+.|+++.|..+|+.+..
T Consensus 338 ~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 338 H-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp H-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 4 2234555655566666778888886 9999988643 45667778888999999999999999998764
Q ss_pred ----CC------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Q 040435 1174 ----KN------------IVSWSAMVAAYGMNGLAHEALALVAEMKLG-GLQPNAVTTLSVLSACSH-GGLVEEGLSFFN 1235 (1991)
Q Consensus 1174 ----~d------------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~-Gi~Pd~~T~~~LL~ac~~-~G~~e~A~~i~~ 1235 (1991)
|+ ...|-..+....+.|..+.|..+|.+..+. +. +....|......-.+ .++.+.|.++|+
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 21 236888888888899999999999999876 31 122333322222223 356999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1236 SMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA---TASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1236 ~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p---d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
..++.++ -+...+...++.+.+.|+.+.|..+|++.....++ ....|...+.--..+|+.+.+..+.+++.+..|
T Consensus 495 ~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 495 LGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9988633 34566778889999999999999999998875442 457999999999999999999999999999999
Q ss_pred CCchH
Q 040435 1313 QNSAG 1317 (1991)
Q Consensus 1313 ~~~~~ 1317 (1991)
+++..
T Consensus 573 ~~~~~ 577 (679)
T 4e6h_A 573 EVNKL 577 (679)
T ss_dssp TCCHH
T ss_pred CCcHH
Confidence 87653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=4.5e-08 Score=115.44 Aligned_cols=226 Identities=8% Similarity=-0.069 Sum_probs=147.1
Q ss_pred hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----ccChHHHHHHHHHHHHhccccchhHHHHH
Q 040435 1076 VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSV----ATELSSSKWAHGIAIRRCLAEEVAVGTAV 1151 (1991)
Q Consensus 1076 ~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~d~~v~naL 1151 (1991)
.++..+...|...|++++|+..|++..+. -+...+..+-..+.. .++.++|...+..+.+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444555555556666666666555542 122333344444444 555555555555555544 44455566
Q ss_pred HHHHHh----cCCHHHHHHHHHhccC-CCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1152 VDMYAK----CGAIEASRKAFDQISR-KNIVSWSAMVAAYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1152 I~~y~k----~G~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
..+|.. .+++++|...|++..+ .+..++..+...|.. .|+.++|++.|++..+.+ +...+..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 666666 7777777777776654 356677777777777 778888888888877755 4555666666666
Q ss_pred h----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH-
Q 040435 1223 H----GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELDIAIDLINQMPDNLKATASAWGALLSACRS- 1293 (1991)
Q Consensus 1223 ~----~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~- 1293 (1991)
. .++.++|.++|+...+. .+...+..+..+|.+ .+++++|.+.+++..+. .+...+..|...+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC
Confidence 6 77888888888777652 245667777777777 78888888888777653 235677777777777
Q ss_pred ---cCChhHHHHHHHHHHhcCCCCch
Q 040435 1294 ---YGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1294 ---~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.++.++|...++++++++|+++.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 77888888888888888775443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-08 Score=118.07 Aligned_cols=244 Identities=11% Similarity=-0.007 Sum_probs=187.7
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--Cchh----hhhHHHHh
Q 040435 1011 TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--PDVV----LWSTMIAG 1084 (1991)
Q Consensus 1011 T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d~~----syn~LI~~ 1084 (1991)
.+...-..+...|+++.|...+..+++... .+..++..+...|.+.|++++|...|++..+ ++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344555677889999999999999988653 3555888899999999999999999998765 2222 37888899
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHH
Q 040435 1085 FTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEAS 1164 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A 1164 (1991)
|...|++++|++.|++..+. .| .+..++..+...|.+.|++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~----------------------------------~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DT----------------------------------TRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--ST----------------------------------TCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cc----------------------------------ccHHHHHHHHHHHHHccCHHHH
Confidence 99999999999999988762 11 2334567788889999999999
Q ss_pred HHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHh
Q 040435 1165 RKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGL---VEEGLSFFNSM 1237 (1991)
Q Consensus 1165 ~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~---~e~A~~i~~~M 1237 (1991)
...|++..+ .+...|..+...+...+++++|++.|+++.+. .|+ ...+..+..++...|. .++|...++.+
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999998875 35677777773444556999999999999874 444 6677777778888887 88899999888
Q ss_pred HHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1238 VQDHGVEPA------LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1238 ~~~~gi~P~------~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
.+...-.|+ ...|..+...|.+.|++++|.+.++++.+..+.+..++..+......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 775433454 25788899999999999999999999987555577777666555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-09 Score=131.77 Aligned_cols=260 Identities=8% Similarity=-0.027 Sum_probs=150.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcCC--Cc-h----hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 040435 1049 SLIDGYSKCHLVELAWKLFNDVKK--PD-V----VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACS 1121 (1991)
Q Consensus 1049 aLI~~y~k~G~l~~A~~lf~~m~~--~d-~----~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a 1121 (1991)
.+...+...|++++|...|++..+ |+ . ..|..+...|...|++++|+..|++..+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------- 116 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA---------------- 116 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------
Confidence 444555566666666666665542 22 1 245555555666666666666665543310
Q ss_pred hccChHHHHHHHHHHHHhc-cccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---------CCHhHHHHHHHHHHHcCC
Q 040435 1122 VATELSSSKWAHGIAIRRC-LAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---------KNIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g-~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---------~d~~s~n~LI~ay~~~G~ 1191 (1991)
.+.+ ......++..+...|...|++++|...|++..+ ....+|..+...|...|+
T Consensus 117 ---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 117 ---------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp ---------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 0000 112234455556666666666666666665432 123456666666777777
Q ss_pred -----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---
Q 040435 1192 -----------------AHEALALVAEMKLG----GLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA--- 1246 (1991)
Q Consensus 1192 -----------------~~eAl~lf~eM~~~----Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~--- 1246 (1991)
+++|++.+++..+. +-.+ ...++..+...+...|++++|.+++++..+...-.++
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 77777766665431 1111 1235556666677777777777777766542111112
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-----
Q 040435 1247 -LEHYSCMVDMLARAGELDIAIDLINQMPDN---LK---ATASAWGALLSACRSYGNTELGAGATSRILELEAQN----- 1314 (1991)
Q Consensus 1247 -~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~---pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~----- 1314 (1991)
...+..+..+|.+.|++++|.+.++++... .. ....+|..+...+...|+.+.|...+++++++.+..
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 235667777777777777777777765431 10 114567777777777788888888777777764432
Q ss_pred -chHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1315 -SAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1315 -~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
...+..++.+|...|++++|....+
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3367777788888888877776544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.6e-09 Score=128.06 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=52.2
Q ss_pred chhhhhhHHHHHHhcCCHHHHHHHHHhcCC--Cc-----hhhhhHHHHhhhhcCChHHHHHHHHHHHHC----CCCCC-H
Q 040435 1043 NELVLNSLIDGYSKCHLVELAWKLFNDVKK--PD-----VVLWSTMIAGFTLCGRPREAIAVFQEMNQA----QEKPN-A 1110 (1991)
Q Consensus 1043 d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d-----~~syn~LI~~y~~~g~~eeAl~lf~~M~~~----Gv~Pd-~ 1110 (1991)
....+..+...+.+.|++++|...|++..+ |+ ...|..+...|...|++++|+..|++.... +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566667777777777777776543 22 245666677777777777777777765432 11111 1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHH
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAI 1137 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~ 1137 (1991)
.++..+-..+...|+++.|...+..+.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223333344444455555544444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.3e-09 Score=124.88 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCC--------------------HHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGL--------------------AHEA 1195 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~--------------------~~eA 1195 (1991)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 44566677778888888888888776543 22 3367777788888888 8888
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 040435 1196 LALVAEMKLG----GLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1196 l~lf~eM~~~----Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA 1266 (1991)
++.+++.... +-.| ...++..+...+...|++++|.++++...+...-.++ ...+..+...|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776532 1111 1235666777788889999999888887653211122 33778888889999999999
Q ss_pred HHHHHHCccCC--CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------chHHHHHHHHHHhCCCchhH
Q 040435 1267 IDLINQMPDNL--KAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQN------SAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1267 ~~l~~~m~~~~--~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~------~~~yvlL~~lya~~G~~~ea 1334 (1991)
.+.+++..... ..+ ..++..+...+...|+.+.|...+++++++.+.. ...+..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99888765421 111 5677888888899999999999999988875543 34677889999999999998
Q ss_pred HHHHHHH
Q 040435 1335 SGTRLLA 1341 (1991)
Q Consensus 1335 ~~vr~~m 1341 (1991)
.......
T Consensus 323 ~~~~~~a 329 (338)
T 3ro2_A 323 MHFAEKH 329 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-09 Score=132.99 Aligned_cols=296 Identities=12% Similarity=0.006 Sum_probs=209.7
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---------Cc
Q 040435 1007 VDEITLVNILQICKCFVHPMECKSVHCVILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVKK---------PD 1074 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~~---------~d 1074 (1991)
.....+...-..+...|++++|...+..+++...... ..++..+...|...|++++|...|++..+ ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445556666778889999999999999998753321 35788889999999999999999987642 12
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQE-KPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv-~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
..+|..+...|...|++++|+..+.+..+..- .++.. ....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHHHH
Confidence 45788888999999999999999998765210 00100 01223344445
Q ss_pred HHHhcCC--------------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1154 MYAKCGA--------------------IEASRKAFDQISR-----K----NIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1154 ~y~k~G~--------------------~e~A~~lf~~m~~-----~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
.|...|+ +++|...|++..+ . ...+|..+...|...|++++|+..+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 5555555554331 1 234677788888888888888888888764
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1205 GGL-QPN----AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1205 ~Gi-~Pd----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
... .++ ..++..+...+...|++++|.++++...+...-.++ ...+..+..+|.+.|++++|.+.++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 122 236777778888999999999998887653211122 45778889999999999999999988754
Q ss_pred C--CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CCchHHHHHHHHHHhCCCchh
Q 040435 1276 N--LKAT----ASAWGALLSACRSYGNTELGAGATSRILELEA------QNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1276 ~--~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P------~~~~~yvlL~~lya~~G~~~e 1333 (1991)
. ...+ ..+|..+...+...|+.+.|...+++++++.+ ....++..++.+|...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1 0112 56888889999999999999999999988743 335667888999988887643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-09 Score=122.78 Aligned_cols=217 Identities=11% Similarity=-0.038 Sum_probs=179.5
Q ss_pred hccChHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHH
Q 040435 1122 VATELSSSKWAHGIAIRRCL---AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEA 1195 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g~---~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eA 1195 (1991)
..++++.|...+..+++... +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45788999999999988642 23567888999999999999999999998864 4678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1196 LALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1196 l~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
+..|+++.+.. +.+...+..+...+...|++++|.++++.+.+ +.|+......+...+.+.|++++|...++++..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998853 33577888899999999999999999999976 567655555566666788999999999987766
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC----chHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1276 NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN----SAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~----~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
..+++...|. ++..+...++.+.|...++++++..|.. +..+..++.+|...|++++|....+...+
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555554 6777778888899999999999887743 67889999999999999999988775543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-07 Score=111.26 Aligned_cols=223 Identities=10% Similarity=-0.011 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCHhHHHHHH
Q 040435 1109 NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK----CGAIEASRKAFDQISR-KNIVSWSAMV 1183 (1991)
Q Consensus 1109 d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k----~G~~e~A~~lf~~m~~-~d~~s~n~LI 1183 (1991)
+..++..+-..+...+++++|...+..+.+.+ +...+..+..+|.. .|++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455566667788899999999999998843 55677888999999 9999999999998765 4778899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1184 AAYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH----GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1184 ~ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~----~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
..|.. .++.++|++.|++..+.+ +...+..+...+.. .|+.++|.++|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888888 99999999999998763 2 5677888899
Q ss_pred HHHH----cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1256 MLAR----AGELDIAIDLINQMPDNLKATASAWGALLSACRS----YGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1256 ~l~r----~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
+|.+ .+++++|.+.+++..+. .+...+..|...+.. .++.++|...++++++.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 9998 99999999999998763 467889999999999 9999999999999999976 7789999999999
Q ss_pred ----CCCchhHHHHHHHHHHcC
Q 040435 1328 ----GGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1328 ----~G~~~ea~~vr~~m~~~g 1345 (1991)
.|++++|....+...+.|
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC
Confidence 999999998776554443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-08 Score=109.88 Aligned_cols=165 Identities=14% Similarity=0.123 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSAC 1221 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac 1221 (1991)
..+|..|...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..+++..... +-+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 34444555555555555555555554432 234444445555555555555555554444321 11233333333444
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
...++++.|.+.+....+ +.| +...+..+..+|.+.|++++|++.+++..+..+.+..+|..+..++...|+.++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 444445555544444433 222 2344444444444444444444444444332233444444444444444444444
Q ss_pred HHHHHHHHhcCCC
Q 040435 1301 AGATSRILELEAQ 1313 (1991)
Q Consensus 1301 ~~~~e~llel~P~ 1313 (1991)
...++++++++|+
T Consensus 161 ~~~~~~al~~~p~ 173 (184)
T 3vtx_A 161 VKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCcc
Confidence 4444444444443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=112.15 Aligned_cols=163 Identities=16% Similarity=0.089 Sum_probs=144.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCM 1253 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~L 1253 (1991)
+...|..|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.+...... .| +...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 56789999999999999999999999998753 235667888889999999999999999998763 44 46778888
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
...+.+.+++++|.+.+++.....+.+..+|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999999998775566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 040435 1334 SSGTRLLA 1341 (1991)
Q Consensus 1334 a~~vr~~m 1341 (1991)
|....+..
T Consensus 160 A~~~~~~a 167 (184)
T 3vtx_A 160 AVKYFKKA 167 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.96 E-value=6e-09 Score=134.08 Aligned_cols=190 Identities=7% Similarity=-0.059 Sum_probs=167.7
Q ss_pred cchhHHHHHHHHHHhcCCH-HHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1143 EEVAVGTAVVDMYAKCGAI-EASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL 1218 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~-e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL 1218 (1991)
.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3556677777888888999 999999987754 35789999999999999999999999999974 58888888888
Q ss_pred HHHHhc---------CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc--------CCHHHHHHHHHHCccCCC--
Q 040435 1219 SACSHG---------GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARA--------GELDIAIDLINQMPDNLK-- 1278 (1991)
Q Consensus 1219 ~ac~~~---------G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~--------G~~eeA~~l~~~m~~~~~-- 1278 (1991)
.++... |++++|.+.+++.++ +.| +...|..+..+|.+. |++++|.+.++++.+..+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 889998 999999999999987 466 478899999999999 999999999999876434
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHH
Q 040435 1279 -ATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1279 -pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
.+..+|..+..++...|++++|...++++++++|+++.++..++.++...|++++|...
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999998763
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.4e-08 Score=125.19 Aligned_cols=352 Identities=11% Similarity=0.023 Sum_probs=196.5
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHhccCCCCCHhHHHHHHHHHHhcC-----C
Q 040435 918 CTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDT---DSAFKVFSEMPQKNKVSWNSALSGLVVNE-----K 989 (1991)
Q Consensus 918 ~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~---e~A~~lf~~m~~~dv~s~n~LI~a~~~~g-----~ 989 (1991)
+.+.|++++|.+++....+.| +...+..|-.+|...|+. ++|...|++..+.+...+..|...+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 344555666666666665554 222333445555566666 78888888776666666666666555554 6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCh---hhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC----CHHH
Q 040435 990 YSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHP---MECKSVHCVILRRAFESNELVLNSLIDGYSKCH----LVEL 1062 (1991)
Q Consensus 990 ~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~---~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G----~l~~ 1062 (1991)
.++|+..|++....|... .+..+-..+...+.. ..+.+.+......| +......|..+|...+ ..+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 788888888887766433 333333333332222 33444444444444 3445556666666666 4455
Q ss_pred HHHHHHhcCCCchhhhhHHHHhhhhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh
Q 040435 1063 AWKLFNDVKKPDVVLWSTMIAGFTLCG---RPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR 1139 (1991)
Q Consensus 1063 A~~lf~~m~~~d~~syn~LI~~y~~~g---~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~ 1139 (1991)
|..+++.....+..++..|...|.+.| +.++|++.|++..+.|- ++...+
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~-------------------------- 216 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRV-------------------------- 216 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHH--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHH--------------------------
Confidence 556666666655567777777777777 77777777777666552 222211
Q ss_pred ccccchhHHHHHHHHHHhc----CCHHHHHHHHHhccCCCHhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040435 1140 CLAEEVAVGTAVVDMYAKC----GAIEASRKAFDQISRKNIVSWSAMVAA-Y--GMNGLAHEALALVAEMKLGGLQPNAV 1212 (1991)
Q Consensus 1140 g~~~d~~v~naLI~~y~k~----G~~e~A~~lf~~m~~~d~~s~n~LI~a-y--~~~G~~~eAl~lf~eM~~~Gi~Pd~~ 1212 (1991)
..|..+|... ++.++|...|++....+...+..|... | ...|+.++|+++|++..+.| +..
T Consensus 217 ---------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 217 ---------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp ---------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred ---------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 2233333322 567777777776663345566666665 3 35678888888888888766 555
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHCccCCCCCHHH
Q 040435 1213 TTLSVLSACSHGG-----LVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELDIAIDLINQMPDNLKATASA 1283 (1991)
Q Consensus 1213 T~~~LL~ac~~~G-----~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd~~~ 1283 (1991)
.+..|-..|. .| +.++|.++|+... .-+...+..|..+|.. ..++++|.+++++..+.. +...
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A 356 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSA 356 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHH
Confidence 5566655555 44 8888888888663 2356667777777765 338888988888876532 3345
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1284 WGALLSACRS----YGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1284 ~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
...|...|.. ..|.+.|...++++.+.++. .+-..+..+...
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~ 402 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAP 402 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHh
Confidence 5566666653 45888898888888887653 344455555433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=126.92 Aligned_cols=224 Identities=10% Similarity=-0.002 Sum_probs=187.9
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC-HHHHHHHHHhccC---CCHhHHHHHHHHHH
Q 040435 1112 TIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA-IEASRKAFDQISR---KNIVSWSAMVAAYG 1187 (1991)
Q Consensus 1112 T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~-~e~A~~lf~~m~~---~d~~s~n~LI~ay~ 1187 (1991)
.+..+-..+...|+.+.|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++.+ .+...|+.+...|.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555666778899999999999999875 3467788899999999997 9999999998875 46789999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH-cCCHHH
Q 040435 1188 MNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLAR-AGELDI 1265 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r-~G~~ee 1265 (1991)
..|++++|+..|+++++.. +-+...|..+..++...|++++|++.++++++ +.| +...|..+..+|.+ .|..++
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999853 33677888999999999999999999999987 567 47889999999999 666577
Q ss_pred H-----HHHHHHCccCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC---------
Q 040435 1266 A-----IDLINQMPDNLKATASAWGALLSACRSYG--NTELGAGATSRILELEAQNSAGYLLASSMYAAGG--------- 1329 (1991)
Q Consensus 1266 A-----~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g--~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G--------- 1329 (1991)
| ++.++++....+.+..+|..+...+...| +.+.|...++++ +.+|+++..+..|+.+|...|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 47788776645567889999999999888 689999999998 999999999999999999975
Q ss_pred CchhHHHHHHHH
Q 040435 1330 LWVESSGTRLLA 1341 (1991)
Q Consensus 1330 ~~~ea~~vr~~m 1341 (1991)
..++|..+.+.+
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 236666665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=114.38 Aligned_cols=193 Identities=15% Similarity=0.085 Sum_probs=111.5
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
+...|..+...+.+.|++++|+..|++..+. .|+ +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~a~~~lg~ 47 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQ----------------------------------DPEALYWLAR 47 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSS----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHH
Confidence 4456666777777777777777777776653 332 2233334444
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMN-----------GLAHEALALVAEMKLGGLQP-NAVTTLSVL 1218 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~-----------G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL 1218 (1991)
.|.+.|++++|...|++..+ | +...|..+...|... |++++|+..|++..+. .| +...+..+.
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg 125 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRG 125 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 45555555555555555432 2 344555555555555 7777777777776653 34 345566666
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.++...|++++|++.|++.++.. .+...+..+..+|.+.|++++|...++++.+..+.+..++..+...+...|+.+
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred HHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 66677777777777777766542 556666777777777777777777777765544456667777777777777777
Q ss_pred HHHHHHHHH
Q 040435 1299 LGAGATSRI 1307 (1991)
Q Consensus 1299 ~A~~~~e~l 1307 (1991)
+|...++++
T Consensus 203 ~A~~~~~~~ 211 (217)
T 2pl2_A 203 EAARAAALE 211 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 777766654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.7e-09 Score=128.95 Aligned_cols=273 Identities=11% Similarity=-0.012 Sum_probs=191.8
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---------Cchhhh
Q 040435 1011 TLVNILQICKCFVHPMECKSVHCVILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVKK---------PDVVLW 1078 (1991)
Q Consensus 1011 T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~~---------~d~~sy 1078 (1991)
.+..+-..+...|++++|...+..+++...... ..++..+...|...|++++|...|++..+ ....+|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455567789999999999999998753321 24788899999999999999999987643 234567
Q ss_pred hHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 040435 1079 STMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKC 1158 (1991)
Q Consensus 1079 n~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~ 1158 (1991)
..+...|...|++++|+..|.+..+.. ...++ ......++..+...|...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~---------------~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA---------------RQLGD---------------RLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTC---------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHhhc---------------hHHHHHHHHHHHHHHHHc
Confidence 788888888999999999888875420 00000 011123444555556666
Q ss_pred CC-----------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-
Q 040435 1159 GA-----------------IEASRKAFDQISR-----K----NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPN- 1210 (1991)
Q Consensus 1159 G~-----------------~e~A~~lf~~m~~-----~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd- 1210 (1991)
|+ +++|...|++..+ . ....|..+...|...|++++|+..|++..+... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 6666666655432 1 234677788888888888888888888765211 012
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---C---
Q 040435 1211 ---AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---L--- 1277 (1991)
Q Consensus 1211 ---~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~--- 1277 (1991)
..++..+...+...|++++|.++++...+...-..+ ...+..+..+|.+.|++++|.+.++++... .
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 226677778888999999999998877653211111 467788889999999999999999887541 1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1278 KATASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.....++..+...+...|+.++|...+++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 011457888889999999999999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-07 Score=113.28 Aligned_cols=220 Identities=8% Similarity=0.015 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------hccCh-------HHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 040435 1092 REAIAVFQEMNQAQEKPNAITIINLLEACS-------VATEL-------SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1092 eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a-------~~g~l-------e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k 1157 (1991)
++|+.+|++..... .-+...|..+...+. ..|+. ++|..+++.+++.-.+.+..++..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666676666531 123334444433332 34664 7777888777774223456688888999999
Q ss_pred cCCHHHHHHHHHhccC--C-CHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 040435 1158 CGAIEASRKAFDQISR--K-NIV-SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS-HGGLVEEGLS 1232 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~--~-d~~-s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~-~~G~~e~A~~ 1232 (1991)
.|++++|..+|+++.+ | +.. .|..++..+.+.|+.++|..+|++..+.+ +++...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998875 3 343 89999999999999999999999998754 234444544433322 3699999999
Q ss_pred HHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1233 FFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN--LKA--TASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1233 i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
+|+..++. .| +...|..++..+.+.|++++|..+|+++... ++| ....|..++.....+|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 44 5788899999999999999999999998763 344 4779999999999999999999999999
Q ss_pred HhcCCCCch
Q 040435 1308 LELEAQNSA 1316 (1991)
Q Consensus 1308 lel~P~~~~ 1316 (1991)
++..|+++.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 999998653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.6e-08 Score=122.51 Aligned_cols=169 Identities=11% Similarity=0.124 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1147 VGTAVVDMYAKCG----AIEASRKAFDQISRKNIVSWSAMVAAYGMNG---LAHEALALVAEMKLGGLQPNAVTTLSVLS 1219 (1991)
Q Consensus 1147 v~naLI~~y~k~G----~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G---~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ 1219 (1991)
....|..+|...+ ..+.|..++......+...+..|...|...| +.++|++.|++..+.| .++...+..|..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 3334444444444 2333333444444434445555555555555 4555555555555444 233333233333
Q ss_pred HHHhc----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1220 ACSHG----GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDM-L--ARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1220 ac~~~----G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~-l--~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.|... ++.++|.++|+... .-+...+..|..+ | ...|++++|.+++++..+. .+...+..|...|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 33322 35555555555442 1123334444443 2 2344555555555554431 23444444444444
Q ss_pred HcC-----ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1293 SYG-----NTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1293 ~~g-----~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
.| |.++|...++++. |.++.++..|+.+|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred -cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 33 5555555555544 4455555555555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.2e-08 Score=134.45 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=142.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSC 1252 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~ 1252 (1991)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|++.|++.++ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3567888899999999999999999998873 454 66788888999999999999999999876 6775 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCch
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWV 1332 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ 1332 (1991)
+..+|.+.|++++|++.+++..+..+.+..+|..|..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999877545678899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 040435 1333 ESSGTRLL 1340 (1991)
Q Consensus 1333 ea~~vr~~ 1340 (1991)
+|.+..+.
T Consensus 163 ~A~~~~~k 170 (723)
T 4gyw_A 163 DYDERMKK 170 (723)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-08 Score=120.25 Aligned_cols=266 Identities=12% Similarity=0.013 Sum_probs=166.0
Q ss_pred HHHhccCChhhHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---------CchhhhhHHHHh
Q 040435 1017 QICKCFVHPMECKSVHCVILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVKK---------PDVVLWSTMIAG 1084 (1991)
Q Consensus 1017 ~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~~---------~d~~syn~LI~~ 1084 (1991)
..+...|+++.|...+..+++...... ..++..+...|...|++++|...|++..+ ....+|..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 344556677777777766666532211 24555666666666666666666655432 113345555556
Q ss_pred hhhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC---
Q 040435 1085 FTLCGRPREAIAVFQEMNQAQE-KPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA--- 1160 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~Gv-~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~--- 1160 (1991)
|...|++++|+..+.+..+..- .++. .....++..+...|...|+
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~~~~ 141 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHAKGKSFG 141 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHHcCcccc
Confidence 6666666666666655433100 0010 0012244555566666666
Q ss_pred -----------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC---
Q 040435 1161 -----------------IEASRKAFDQISR-----K----NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPN--- 1210 (1991)
Q Consensus 1161 -----------------~e~A~~lf~~m~~-----~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd--- 1210 (1991)
+++|...+++..+ . ....+..+...|...|++++|+..+++..+... .++
T Consensus 142 ~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 221 (338)
T 3ro2_A 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 221 (338)
T ss_dssp SSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH
Confidence 6666666655432 1 234677778888888888888888888764210 112
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCC--CC----
Q 040435 1211 -AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDNL--KA---- 1279 (1991)
Q Consensus 1211 -~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~--~p---- 1279 (1991)
..++..+...+...|++++|.++++...+...-.++ ...+..+..+|.+.|++++|.+.++++.... ..
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 226677777888889999999988877653211122 4577888889999999999999988875410 01
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
...+|..+...+...|+.+.|...+++++++.+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1457888899999999999999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.6e-09 Score=123.40 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC----------C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCC
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR----------K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLG------GLQ 1208 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~------Gi~ 1208 (1991)
.++..+...|...|++++|...|+++.+ + ....|..+...|...|++++|+++|+++.+. +-.
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555556666666666665554432 1 1234555555666666666666666665542 112
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1209 PN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDH------GVEPA-------LEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1209 Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~------gi~P~-------~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
|+ ..++..+...+...|++++|.++++.+.+.. ...+. ...+..+...+...+.+.+|...++...
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 21 2244555555566666666666666554310 01111 1112222222333333344444444433
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1275 DNLKATASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1275 ~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
...+....+|..|..++...|+.++|...+++++++.|
T Consensus 272 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 272 VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 22222344555555555555555555555555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-08 Score=105.27 Aligned_cols=166 Identities=13% Similarity=0.019 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH 1223 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~ 1223 (1991)
.+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344455555556666666666655543 234455555555555555555555555555432 2234444444555555
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
.|++++|.++++.+.+. ...+...+..+..++.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|...
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555432 1123444444555555555555555555554432233444555555555555555555555
Q ss_pred HHHHHhcCCCCc
Q 040435 1304 TSRILELEAQNS 1315 (1991)
Q Consensus 1304 ~e~llel~P~~~ 1315 (1991)
+++++++.|+++
T Consensus 167 ~~~~~~~~~~~~ 178 (186)
T 3as5_A 167 FKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHcCCCch
Confidence 555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7e-08 Score=105.09 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVD 1255 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~ 1255 (1991)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.++++.+.+. .| +...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 467778889999999999999999987643 346778888889999999999999999999764 44 5788999999
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
.+.+.|++++|.+.++++....+.+..+|..+...+...|+.+.|...++++++..|+++..+..++.+|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999877556788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 040435 1336 GTRLLAK 1342 (1991)
Q Consensus 1336 ~vr~~m~ 1342 (1991)
...+...
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.83 E-value=9.5e-06 Score=107.75 Aligned_cols=432 Identities=9% Similarity=-0.008 Sum_probs=223.1
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCC-CCchHHH
Q 040435 770 RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGA---YYEGLQVHGYIIRSGL-WAVHSVQ 845 (1991)
Q Consensus 770 ~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~---~~~a~~l~~~~~k~G~-~~d~~v~ 845 (1991)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+.++|+..+.... .|++.+|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47888999999888888999999999998875 44556677777777777777 8888888888877542 3666677
Q ss_pred HHHHHHHhh-CCH--------HHHHHHHHhc-----C-CC-CHHHHHHHHHHHH---------HcCChHHHHHHHHHHHh
Q 040435 846 NSVLSMYVD-ADM--------ECARKLFDEM-----C-ER-DVISWSVMIGGYV---------QSAEAFSGLRLFRQMVS 900 (1991)
Q Consensus 846 naLi~~yak-g~~--------e~A~~vf~~m-----~-~~-d~~syn~LI~a~~---------~~G~~~eAl~lf~~M~~ 900 (1991)
...+....+ +++ +..+++|+.. . .+ +...|...|.-.. ..++.+.+..+|.+.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 776665444 332 3344666653 1 22 3456776666433 22345667777777664
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhcc-------CCC--
Q 040435 901 GFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSE-------MPQ-- 971 (1991)
Q Consensus 901 ~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~-------m~~-- 971 (1991)
. ....-..+|..........+. ..++.++.... ..++.|+..+.+ +.+
T Consensus 223 i-P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 223 Q-PMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp S-CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred C-ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhcc
Confidence 2 111111222222111111111 11222211110 011111111111 100
Q ss_pred ------------C--------CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 040435 972 ------------K--------NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSV 1031 (1991)
Q Consensus 972 ------------~--------dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i 1031 (1991)
| ....|...|.---.++. ..+... ..+.+..+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~----------------~l~~~~------------~~~Rv~~~ 331 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL----------------ELSDDL------------HKARMTYV 331 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT----------------CCCHHH------------HHHHHHHH
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc----------------cccchh------------hHHHHHHH
Confidence 0 01223333321111110 000000 01122233
Q ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH-HHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCC--
Q 040435 1032 HCVILRRAFESNELVLNSLIDGYSKCHLVELAW-KLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQ-- 1105 (1991)
Q Consensus 1032 ~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~-~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~G-- 1105 (1991)
++.++..- .....+|-..+..+.+.|+.++|. ++|++... | +...|-..+...-+.|++++|.++|+++....
T Consensus 332 Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 332 YMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33333321 223344444444444455555553 55544432 2 23334444445555555555555555554321
Q ss_pred -------CCCC------------HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcC-CHHHHH
Q 040435 1106 -------EKPN------------AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG-AIEASR 1165 (1991)
Q Consensus 1106 -------v~Pd------------~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G-~~e~A~ 1165 (1991)
-.|+ ...|...+....+.+.++.|+.++..+.+.-......+|-..+.+-.+++ +.+.|.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHH
Confidence 0121 22455666666677778888888888777611112233333333334444 478888
Q ss_pred HHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1166 KAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP--NAVTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1166 ~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P--d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
++|+...+ .+...|...+.-....|+.+.|..+|++.......+ ....|...+.--...|+.+.+.++.+++.+.
T Consensus 491 ~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 491 KVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88887764 355667777777777788888888888877643222 2235666666667778888888888888764
Q ss_pred cCCCCCHHHHHHHHHHH
Q 040435 1241 HGVEPALEHYSCMVDML 1257 (1991)
Q Consensus 1241 ~gi~P~~~~y~~Li~~l 1257 (1991)
.|+......+++-|
T Consensus 571 ---~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 571 ---FPEVNKLEEFTNKY 584 (679)
T ss_dssp ---STTCCHHHHHHHHT
T ss_pred ---CCCCcHHHHHHHHh
Confidence 45444444444444
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=119.82 Aligned_cols=239 Identities=10% Similarity=0.065 Sum_probs=161.5
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
+..+|..+...|...|++++|+.+|+++.+.. .............++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~la~ 77 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDL----------------------------EKTSGHDHPDVATMLNILAL 77 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHHHCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HHHcCCCCHHHHHHHHHHHH
Confidence 34567777888888888888888887775410 00000011223445666777
Q ss_pred HHHhcCCHHHHHHHHHhccC-----------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR-----------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLG------GLQP-NAVTTL 1215 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~-----------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~------Gi~P-d~~T~~ 1215 (1991)
.|...|++++|...|++..+ ....+|..+...|...|++++|+..|+++.+. +-.| ....+.
T Consensus 78 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 78888888888888876642 13467888999999999999999999998764 2223 334577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccC--------CCC--
Q 040435 1216 SVLSACSHGGLVEEGLSFFNSMVQDH-----GVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDN--------LKA-- 1279 (1991)
Q Consensus 1216 ~LL~ac~~~G~~e~A~~i~~~M~~~~-----gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--------~~p-- 1279 (1991)
.+...+...|++++|.++++.+.+.. +..|. ...+..+..+|.+.|++++|.+.++++.+. ..+
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 78888999999999999999987631 11332 467888999999999999999999987641 111
Q ss_pred -----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1280 -----TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1280 -----d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
....+..+...+...+....+...++++.+..|..+..+..++.+|...|++++|....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1223334444455666777788888888889999999999999999999999999987654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-07 Score=107.74 Aligned_cols=206 Identities=10% Similarity=0.029 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHH
Q 040435 1110 AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAY 1186 (1991)
Q Consensus 1110 ~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay 1186 (1991)
...+...-..+...|++++|...+..+++....++...+..+...|.+.|++++|...|++..+ | +...|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 3444444445555555555555555555544323334444455555555555555555555432 2 234555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHH
Q 040435 1187 GMNGLAHEALALVAEMKLGGLQPN-A-------VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVD 1255 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~Gi~Pd-~-------~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~ 1255 (1991)
...|++++|++.|++..+. .|+ . ..|..+...+...|++++|.+.|+..++ +.|+ ...|..+..
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 5555555555555555542 222 2 2244444444555555555555555543 3443 234444444
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
+|...|+ ..++++......+...+..+. ....+.++.|...++++++++|+++.....+..+...
T Consensus 162 ~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHH-----HHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 4443332 222222221112222232222 2233445999999999999999999988888777543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.74 E-value=5.5e-07 Score=108.58 Aligned_cols=212 Identities=7% Similarity=-0.009 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhccC---C-CHhHHHHHHHHHHH
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYA-------KCGAI-------EASRKAFDQISR---K-NIVSWSAMVAAYGM 1188 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~-------k~G~~-------e~A~~lf~~m~~---~-d~~s~n~LI~ay~~ 1188 (1991)
+.|..+++.+++.. +.+..+|..+...+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666777777653 446667777777665 45886 999999998764 3 56689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH-cCCHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNA-V-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLAR-AGELD 1264 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~-~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r-~G~~e 1264 (1991)
.|++++|.++|+++.+ +.|+. . .|..+...+.+.|++++|.++|++.++ ..| +...|...+....+ .|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999997 45643 2 788888899999999999999999876 444 34555544444333 69999
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCC-CchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL---EAQ-NSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel---~P~-~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+|.++++++.+..+.+...|..++..+...|+.+.|..+++++++. .|+ ....+..++..+...|+.++|..+...
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999987655668899999999999999999999999999995 554 566788889999999999999988766
Q ss_pred HHHc
Q 040435 1341 AKER 1344 (1991)
Q Consensus 1341 m~~~ 1344 (1991)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-07 Score=115.18 Aligned_cols=227 Identities=7% Similarity=-0.047 Sum_probs=108.8
Q ss_pred HhhhhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhhccChHHHHHHHHHHHHhcc------ccchhHHHHH
Q 040435 1083 AGFTLCGRPREAIAVFQEMNQAQ-EKPN----AITIINLLEACSVATELSSSKWAHGIAIRRCL------AEEVAVGTAV 1151 (1991)
Q Consensus 1083 ~~y~~~g~~eeAl~lf~~M~~~G-v~Pd----~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~------~~d~~v~naL 1151 (1991)
..+...|++++|+..|++..+.- -.++ ..++..+-..+...|+.+.|...+..+.+.-- .....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34455666666666666654420 0112 12333333344444444444444444333210 1112344555
Q ss_pred HHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLG----GL-QPNAVTTLSV 1217 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~----Gi-~Pd~~T~~~L 1217 (1991)
...|...|++++|...|++..+ ++ ..+|..+...|...|++++|++.|++..+. +- .....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 5566666666666666655432 11 125555666666666666666666665541 11 1123345555
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLARAGE---LDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r~G~---~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
...+...|++++|.+++++..+...-..+ ...+..+..+|.+.|+ +++|..++++... .+....++..|...+
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHH
Confidence 55566666666666666555432111111 1223445555555555 5555555555531 111223444555555
Q ss_pred HHcCChhHHHHHHHHHHhc
Q 040435 1292 RSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel 1310 (1991)
...|+.+.|...+++++++
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555666565555555553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-07 Score=121.82 Aligned_cols=179 Identities=10% Similarity=-0.035 Sum_probs=156.9
Q ss_pred CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1160 AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLA-HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFN 1235 (1991)
Q Consensus 1160 ~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~-~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~ 1235 (1991)
.+++|...+++... .+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666667766543 3678899999999999999 99999999998753 2347789999999999999999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc--------CChh
Q 040435 1236 SMVQDHGVEPALEHYSCMVDMLARA---------GELDIAIDLINQMPDNLKATASAWGALLSACRSY--------GNTE 1298 (1991)
Q Consensus 1236 ~M~~~~gi~P~~~~y~~Li~~l~r~---------G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~--------g~~e 1298 (1991)
..++ +.|+...+..+..+|.+. |++++|.+.++++.+..+.+..+|..|..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 678888999999999999 9999999999998875566789999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1299 LGAGATSRILELEA---QNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1299 ~A~~~~e~llel~P---~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+|...++++++++| +++..|..++.+|...|++++|....+...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998766543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.3e-06 Score=101.67 Aligned_cols=222 Identities=12% Similarity=-0.002 Sum_probs=141.8
Q ss_pred HHhhccChHHHHHHHHHHHHhcccc-----chhHHHHHHHHHHhcCCHHHHHHHHHhccC----------C-CHhHHHHH
Q 040435 1119 ACSVATELSSSKWAHGIAIRRCLAE-----EVAVGTAVVDMYAKCGAIEASRKAFDQISR----------K-NIVSWSAM 1182 (1991)
Q Consensus 1119 a~a~~g~le~a~~i~~~~~k~g~~~-----d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~-d~~s~n~L 1182 (1991)
.+...|+++.|...+....+..-.. .......+...|...|++++|...+++..+ + ....+..+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 3444455555555444443321110 122345566677788888888888776542 1 12355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHH-----HH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQ--P--NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYS-----CM 1253 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~--P--d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~-----~L 1253 (1991)
...|...|++++|...+++.....-. + ...++..+...+...|++++|..+++.......-......+. .+
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 221 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 77788888898888888887653211 1 234566677778888999999988888765321111111121 23
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------chHHHHHHH
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKA----TASAWGALLSACRSYGNTELGAGATSRILELEAQN------SAGYLLASS 1323 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~p----d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~------~~~yvlL~~ 1323 (1991)
+..+.+.|++++|...+++.....+. ....+..+...+...|+.++|...++++++..+.. ...+..++.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 34577889999999999888653211 13356777788888899999999998887764431 236677788
Q ss_pred HHHhCCCchhHHHHHHH
Q 040435 1324 MYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1324 lya~~G~~~ea~~vr~~ 1340 (1991)
+|...|+.++|......
T Consensus 302 ~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 89999999888875543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.67 E-value=4e-07 Score=104.17 Aligned_cols=153 Identities=8% Similarity=-0.036 Sum_probs=87.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMV 1254 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li 1254 (1991)
...|..+...|...|++++|++.|++..+..-.++...+..+..++...|++++|.+.++..++ ..|+ ...|..+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHH
Confidence 3445555555566666666666666655543224555555555555566666666666665544 3443 34555566
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CchHHHHHHHHH
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKATA-------SAWGALLSACRSYGNTELGAGATSRILELEAQ--NSAGYLLASSMY 1325 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~pd~-------~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~--~~~~yvlL~~ly 1325 (1991)
.+|.+.|++++|.+.+++..+..+.+. .+|..+...+...|++++|+..++++++++|+ ++..+..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 666666666666666665554323333 34555555566666666666666666666666 556666666666
Q ss_pred HhCCCc
Q 040435 1326 AAGGLW 1331 (1991)
Q Consensus 1326 a~~G~~ 1331 (1991)
...|+.
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.8e-07 Score=113.37 Aligned_cols=222 Identities=11% Similarity=-0.048 Sum_probs=168.1
Q ss_pred HHHhhccChHHHHHHHHHHHHh----cccc-chhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----HhHHHHH
Q 040435 1118 EACSVATELSSSKWAHGIAIRR----CLAE-EVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KN-----IVSWSAM 1182 (1991)
Q Consensus 1118 ~a~a~~g~le~a~~i~~~~~k~----g~~~-d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d-----~~s~n~L 1182 (1991)
..+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...|++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 4466889999999999998875 2112 356788899999999999999999987653 22 3578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGL-QPNA----VTTLSVLSACSHGGLVEEGLSFFNSMVQDH---GVEP-ALEHYSCM 1253 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd~----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~---gi~P-~~~~y~~L 1253 (1991)
...|...|++++|++.|++..+..- .++. .++..+...+...|++++|.+++++..+-. +..| ....+..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 9999999999999999998875311 1222 367888889999999999999999886521 2324 35678999
Q ss_pred HHHHHHcCCHHHHHHHHHHCccC----CCC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1254 VDMLARAGELDIAIDLINQMPDN----LKA-TASAWGALLSACRSYGN---TELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~----~~p-d~~~~~~Ll~a~~~~g~---~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
..+|.+.|++++|.+.+++..+. ..| ....+..|...+...|+ .+.|...+++. ...|.....+..|+.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 99999999999999999987541 111 12335667777778888 67777766665 34445566788999999
Q ss_pred HhCCCchhHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~ 1340 (1991)
...|++++|....+.
T Consensus 350 ~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 350 HERKNFQKASAYFLK 364 (383)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 999999999986653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.8e-07 Score=123.80 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=147.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLS 1219 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ 1219 (1991)
+...++.|...|.+.|++++|++.|++..+ | +..+|+.|...|.+.|++++|++.|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 466788899999999999999999998764 3 5789999999999999999999999999874 564 678999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
++...|++++|++.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++..+..+.+..+|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 6774 7899999999999999999999999988755567899999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 040435 1299 LGAGATSRILELEAQ 1313 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~ 1313 (1991)
+|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-06 Score=88.28 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDML 1257 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l 1257 (1991)
.|..+...|...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|.++++.+.+. ...+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45556666666666666666666665532 224445555555666666666666666665542 112344555555666
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.+.|++++|.+.++++....+.+..+|..+...+...|+.+.|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666666554433334555666666666666666666666666665554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-06 Score=106.49 Aligned_cols=217 Identities=13% Similarity=0.010 Sum_probs=117.2
Q ss_pred hccChHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----HhHHHHHHHHH
Q 040435 1122 VATELSSSKWAHGIAIRRCL-----AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KN-----IVSWSAMVAAY 1186 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g~-----~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d-----~~s~n~LI~ay 1186 (1991)
..|+++.|...+..+.+..- .....++..+...|...|+++.|...+++..+ ++ ..+++.+...|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 44455555555544443211 11233455566666666666666666655432 11 33566666677
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCC-CHHHHHHHHHHHH
Q 040435 1187 GMNGLAHEALALVAEMKLG----GLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHG--VEP-ALEHYSCMVDMLA 1258 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~----Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g--i~P-~~~~y~~Li~~l~ 1258 (1991)
...|++++|++.|++..+. |-.+ ...++..+...+...|++++|.+++++.++... ..| ....+..+..+|.
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 7777777777777665542 1111 123455566666777777777777776654110 112 2455666777777
Q ss_pred HcCCHHHHHHHHHHCccC----CCC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1259 RAGELDIAIDLINQMPDN----LKA-TASAWGALLSACRSYGN---TELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~----~~p-d~~~~~~Ll~a~~~~g~---~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+.|++++|.+.+++..+. ..+ ....+..|...+...|+ .+.|...+++. ...|.....+..++.+|...|+
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCC
Confidence 777777777777665431 111 12334444444445555 45555544441 2223334456667777777777
Q ss_pred chhHHHHHH
Q 040435 1331 WVESSGTRL 1339 (1991)
Q Consensus 1331 ~~ea~~vr~ 1339 (1991)
+++|....+
T Consensus 352 ~~~A~~~~~ 360 (378)
T 3q15_A 352 FEQAAAFYR 360 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.9e-06 Score=101.89 Aligned_cols=228 Identities=10% Similarity=0.023 Sum_probs=163.0
Q ss_pred HHhhhhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhhccChHHHHHHHHHHHHhcc-----c-cchhHHHH
Q 040435 1082 IAGFTLCGRPREAIAVFQEMNQAQ-EKPN----AITIINLLEACSVATELSSSKWAHGIAIRRCL-----A-EEVAVGTA 1150 (1991)
Q Consensus 1082 I~~y~~~g~~eeAl~lf~~M~~~G-v~Pd----~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~-----~-~d~~v~na 1150 (1991)
...+...|++++|+..|++..+.- -.++ ..++..+-..+...|+.+.|...+..+.+..- . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 334556777777777777765431 1122 23445555566677777777777766654321 1 12456778
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKL-----GGLQPNAVTTLS 1216 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~-----~Gi~Pd~~T~~~ 1216 (1991)
+...|...|++++|...|++..+ ++ ..+++.|...|...|++++|++.|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 88899999999999999887653 22 35788888999999999999999999876 33 223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLARAGE---LDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r~G~---~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
+...+.+.|+.++|.+++++..+...-..+ ...+..+..++...|+ +++|..++++... .+.....+..|...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHH
Confidence 888999999999999999998764332222 3456667777777888 9999999998642 12234567788889
Q ss_pred HHHcCChhHHHHHHHHHHhcC
Q 040435 1291 CRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~ 1311 (1991)
+...|+.+.|...++++++..
T Consensus 346 y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-07 Score=100.55 Aligned_cols=141 Identities=9% Similarity=-0.011 Sum_probs=112.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~ 1262 (1991)
.+...|+.++|++.+++... ..|+ ...+..+...|...|++++|.+.|++.++ +.| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34456778888888877654 2332 33455677778888899999998888876 566 47888889999999999
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA-TSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~-~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+++|...+++..+..+.+..+|..|...+...|+.++|.+. ++++++++|+++..|.+.+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999988774455788999999999999998776654 699999999999999999999998885
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.6e-07 Score=104.57 Aligned_cols=221 Identities=12% Similarity=0.051 Sum_probs=154.1
Q ss_pred hhccChHHHHHHHHHHHHh-------ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----------C-CHhHHHHH
Q 040435 1121 SVATELSSSKWAHGIAIRR-------CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----------K-NIVSWSAM 1182 (1991)
Q Consensus 1121 a~~g~le~a~~i~~~~~k~-------g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~-d~~s~n~L 1182 (1991)
...|+++.|...+..+++. ..+....++..+...|...|++++|...|+++.+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776653 2234567788899999999999999999987652 1 34578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-CHHH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLG------GLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH-----GVEP-ALEH 1249 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~------Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~-----gi~P-~~~~ 1249 (1991)
...|...|++++|++.|++..+. .-.| ...++..+...+...|++++|.++++++.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1123 34567788888999999999999999887631 1133 2567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccC---------CCCCHHHHHHHHHHHHHcCChhHHH------HHHHHHHhcCCCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDN---------LKATASAWGALLSACRSYGNTELGA------GATSRILELEAQN 1314 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~---------~~pd~~~~~~Ll~a~~~~g~~e~A~------~~~e~llel~P~~ 1314 (1991)
+..+..+|.+.|++++|.++++++.+. .......|..+.......+....+. ..++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999887531 1122334544444444433333222 2222222234556
Q ss_pred chHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1315 SAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1315 ~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
+..+..++.+|...|++++|....+..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678889999999999999999876643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.41 E-value=4e-06 Score=85.52 Aligned_cols=129 Identities=17% Similarity=0.196 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.+..+...+...|++++|.++++.+.+. -..+...+..+...+.+.|++++|.++++++....+.+..+|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4566778888999999999999999764 22357788889999999999999999999987655667889999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1293 SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
..|+.+.|...++++++..|.++..+..++.+|...|++++|......+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999987766544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.4e-06 Score=99.92 Aligned_cols=170 Identities=6% Similarity=-0.060 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC----
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMN-GLAHEALALVAEMKLGGLQ-PN---- 1210 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~-G~~~eAl~lf~eM~~~Gi~-Pd---- 1210 (1991)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4556666777777777777777765543 11 34677788888885 8888888888887652100 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH----
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPAL-----EHYSCMVDMLARAGELDIAIDLINQMPDNLKATA---- 1281 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~-----~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~---- 1281 (1991)
..++..+...+...|++++|..+|+...+...-.+.. ..|..+..++.+.|++++|...+++..+. .|+.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~ 236 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE-DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCcH
Confidence 3457777888888899999999988887631111111 15677778888889999999999888652 3321
Q ss_pred --HHHHHHHHHHH--HcCChhHHHHHHHHHHhcCCCCch
Q 040435 1282 --SAWGALLSACR--SYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1282 --~~~~~Ll~a~~--~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
..+..|+.++. ..++++.|...++++.+++|....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 13445556654 345677888888777778776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.4e-07 Score=119.85 Aligned_cols=150 Identities=13% Similarity=-0.028 Sum_probs=80.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMV 1254 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li 1254 (1991)
...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.|++.++ +.| +...|..+.
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg 508 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALA 508 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHH
Confidence 3455555555555555555555555555422 12334455555555555666666665555544 344 244555555
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
.+|.+.|++++ .+.++++.+..+.+..+|..+..++...|+.++|...++++++++|+++.++..++.+|...|+
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 55556666655 5555555443334455555566566666666666666666666666655556556655555444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.39 E-value=3.9e-06 Score=97.89 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC----------C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR----------K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLG------GL 1207 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~------Gi 1207 (1991)
..++..+...|...|++++|...|++..+ | ...+|..+...|...|++++|+..|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556666777777777777777766542 1 2456777778888888888888888887653 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCCC-HHHHHHHHHHHHHc------CCHHHHHHHHHHC
Q 040435 1208 QP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH------GVEPA-LEHYSCMVDMLARA------GELDIAIDLINQM 1273 (1991)
Q Consensus 1208 ~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~------gi~P~-~~~y~~Li~~l~r~------G~~eeA~~l~~~m 1273 (1991)
.| ...++..+...+...|++++|.++++.+.+.. ...+. ...|..+...+... ..+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 23 23467777788888888888888888776531 11222 22333333333332 2345555555555
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1274 PDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1274 ~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
....+....+|..|...+...|+.++|...+++++++
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4332334568888899999999999999999998875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.39 E-value=5.2e-06 Score=97.10 Aligned_cols=189 Identities=9% Similarity=-0.026 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--K-N---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPN-AVTTLS 1216 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd-~~T~~~ 1216 (1991)
...+-.+...|.+.|++++|...|+++.+ | + ...|..+..+|.+.|++++|+..|++..+..- .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444566677788889999988888765 3 3 56777788888889999999999988887421 122 334555
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHhHHhcCCCCCHH-HH--------------HHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1217 VLSACSH--------GGLVEEGLSFFNSMVQDHGVEPALE-HY--------------SCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1217 LL~ac~~--------~G~~e~A~~i~~~M~~~~gi~P~~~-~y--------------~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
+..++.. .|++++|...|+.+++.+.-.+... .. ..+...|.+.|++++|...++++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666667 8889999999988877432222211 11 56688899999999999999998
Q ss_pred ccCCCC---CHHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcCCCCch---HHHHHHHHHHhCCCchh
Q 040435 1274 PDNLKA---TASAWGALLSACRSY----------GNTELGAGATSRILELEAQNSA---GYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1274 ~~~~~p---d~~~~~~Ll~a~~~~----------g~~e~A~~~~e~llel~P~~~~---~yvlL~~lya~~G~~~e 1333 (1991)
.+..+. ....|..+..++... |++++|...++++++..|+++. ++..+..++...|+.++
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 763222 345788888888766 8889999999999999999864 44555666665555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-05 Score=92.46 Aligned_cols=179 Identities=8% Similarity=-0.066 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV----TTLSV 1217 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~----T~~~L 1217 (1991)
+-.+...|.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.. |+.. .+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHH
Confidence 33445556666777777777776653 32 2356666667777777777777777766532 3221 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHH-------------
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAW------------- 1284 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~------------- 1284 (1991)
..++...|. ..+ ..|..+...+...|++++|...++++.+..+.+..++
T Consensus 85 g~~~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 85 GLTNMALDD-----SAL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh-----hhh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 222222100 000 0000011111123444444444444443322222222
Q ss_pred ----HHHHHHHHHcCChhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1285 ----GALLSACRSYGNTELGAGATSRILELEAQNS---AGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1285 ----~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~---~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
..+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|....+.+...+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3456678889999999999999999999986 5688999999999999999998887776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.38 E-value=7.7e-05 Score=91.82 Aligned_cols=128 Identities=12% Similarity=0.115 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC----CCH-hHHHH-----HHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR----KNI-VSWSA-----MVAAYGMNGLAHEALALVAEMKLGGLQPN---AVTT 1214 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~----~d~-~s~n~-----LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd---~~T~ 1214 (1991)
+..+...+...|++++|...+++... ++. ..|.. ++..+...|+.++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44445555555666665555554421 111 11211 22234556666666666665543221110 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQD---HGVEPAL-EHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~---~gi~P~~-~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
..+..++...|+.++|.+.++..... .|..++. ..+..+..++.+.|+.++|.+.+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555566666666666666655432 1211122 3555566667777777777777766543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.5e-06 Score=99.62 Aligned_cols=171 Identities=12% Similarity=-0.026 Sum_probs=137.6
Q ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1162 EASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1162 e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
+.....+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|+.++|.+.++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 34444445444445566777888889999999999999998874 45 556778888899999999999999998865
Q ss_pred cCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--chH
Q 040435 1241 HGVEPALEHYSCM-VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN--SAG 1317 (1991)
Q Consensus 1241 ~gi~P~~~~y~~L-i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~--~~~ 1317 (1991)
..|+....... ...+.+.|+.++|.+.+++.....+.+...+..|...+...|+.++|...++++++.+|++ +.+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 46665433333 3346677888889999988876556788999999999999999999999999999999998 889
Q ss_pred HHHHHHHHHhCCCchhHHHH
Q 040435 1318 YLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1318 yvlL~~lya~~G~~~ea~~v 1337 (1991)
+..|+.+|...|+.++|...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHH
Confidence 99999999999999998754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.6e-06 Score=100.72 Aligned_cols=187 Identities=7% Similarity=-0.042 Sum_probs=134.4
Q ss_pred HHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-PN----AVTTLSV 1217 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-Pd----~~T~~~L 1217 (1991)
...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.... .+ ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888999999999887653 11 468999999999999999999999988652110 11 3467888
Q ss_pred HHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH-------HHHH
Q 040435 1218 LSACSHG-GLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA-------SAWG 1285 (1991)
Q Consensus 1218 L~ac~~~-G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~-------~~~~ 1285 (1991)
...+... |++++|++.|++.++...-..+ ...+..+..+|.+.|++++|.+.+++..+..+.+. ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8889996 9999999999998763211111 35688899999999999999999998865311111 2677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCchH-----HHHHHHHHH--hCCCchhHHHHH
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQNSAG-----YLLASSMYA--AGGLWVESSGTR 1338 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~-----yvlL~~lya--~~G~~~ea~~vr 1338 (1991)
.+..++...|+.+.|...++++++++|+.... +..++..|. ..+++++|....
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 78888999999999999999999999986543 233455554 345666655443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.31 E-value=7.7e-06 Score=95.63 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=137.1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-H
Q 040435 1173 RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN----AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-L 1247 (1991)
Q Consensus 1173 ~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~ 1247 (1991)
..+...+-.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++...|++++|...|+..++.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3466777778888999999999999999998753 43 567778888999999999999999999875433333 4
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHCccCCCCCHHHH-----------------HHHHHHHHHcCChhHHHH
Q 040435 1248 EHYSCMVDMLAR--------AGELDIAIDLINQMPDNLKATASAW-----------------GALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1248 ~~y~~Li~~l~r--------~G~~eeA~~l~~~m~~~~~pd~~~~-----------------~~Ll~a~~~~g~~e~A~~ 1302 (1991)
..+..+..++.+ .|++++|...++++....+.+...+ ..+...+...|+++.|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567788889999 9999999999999876444444444 556788899999999999
Q ss_pred HHHHHHhcCCCC---chHHHHHHHHHHhC----------CCchhHHHHHHHHHH
Q 040435 1303 ATSRILELEAQN---SAGYLLASSMYAAG----------GLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1303 ~~e~llel~P~~---~~~yvlL~~lya~~----------G~~~ea~~vr~~m~~ 1343 (1991)
.++++++..|++ +..+..++.+|... |++++|....+...+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 999999999985 45788999999977 888999887765543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.28 E-value=5.5e-05 Score=90.08 Aligned_cols=163 Identities=7% Similarity=0.043 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR-----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-----NAVTTLS 1216 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-----d~~T~~~ 1216 (1991)
..-.+...|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+++++|.+ ..| +..+...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHH
Confidence 334556666666777777776666532 1345555666666667777777777776665 345 2444444
Q ss_pred HHHH--HHhcC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC----------CCCCHH
Q 040435 1217 VLSA--CSHGG--LVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN----------LKATAS 1282 (1991)
Q Consensus 1217 LL~a--c~~~G--~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----------~~pd~~ 1282 (1991)
|..+ ....| ...+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.+. .+.++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 4444 22223 666666666666442 333222233333566667777776666654321 023455
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
+...++......|+ .|.+.++++.+..|+++.
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 55555555555555 566666666666666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-05 Score=106.44 Aligned_cols=161 Identities=11% Similarity=-0.001 Sum_probs=127.9
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFF 1234 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~ 1234 (1991)
.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3778889999988764 357789999999999999999999999998753 335678888889999999999999999
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHhc
Q 040435 1235 NSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY---GNTELGAGATSRILEL 1310 (1991)
Q Consensus 1235 ~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~---g~~e~A~~~~e~llel 1310 (1991)
++.++ +.| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++... |+.++|...++++++.
T Consensus 81 ~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99877 456 4788999999999999999999999998775556788999999999999 9999999999999999
Q ss_pred CCCCchHHHHHH
Q 040435 1311 EAQNSAGYLLAS 1322 (1991)
Q Consensus 1311 ~P~~~~~yvlL~ 1322 (1991)
+|.+...+.+++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.20 E-value=4.1e-05 Score=91.21 Aligned_cols=175 Identities=9% Similarity=-0.001 Sum_probs=126.5
Q ss_pred HHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1164 SRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1164 A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
|...|++... ++..++..+..+|...|++++|++++.+-+..|-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666543 455556677788888999999999998887655322 445666777888899999999999998865
Q ss_pred hcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1240 DHGVEP-----ALEHYSCMVDM--LARAG--ELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1240 ~~gi~P-----~~~~y~~Li~~--l~r~G--~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
..| +-.+...|..+ ....| +..+|..+|+++.+. .|+...-..|+.++...|++++|+..++.+.++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566 24444555544 33334 899999999998764 455333344555788889999999999887776
Q ss_pred ----------CCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1311 ----------EAQNSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1311 ----------~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
+|+++.++..++.++...|+ ++.++...+++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48888888888888888887 777777766654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-05 Score=106.16 Aligned_cols=150 Identities=15% Similarity=-0.055 Sum_probs=115.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
.|+.++|++.|++..+.. +-+...+..+...+...|++++|.+.+++.++ +.| +...|..+..+|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999987642 23467888888999999999999999999875 567 4788999999999999999999
Q ss_pred HHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC---CCchhHHHHHHHHH
Q 040435 1268 DLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG---GLWVESSGTRLLAK 1342 (1991)
Q Consensus 1268 ~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~---G~~~ea~~vr~~m~ 1342 (1991)
+.+++..+..+.+...|..+..++...|+.++|...++++++++|+++..+..++.+|... |++++|....+...
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999987755667889999999999999999999999999999999999999999999999 77777776555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=106.97 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=131.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLS 1219 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ 1219 (1991)
+...+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.|++..+. .| +...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 344566677778888999999999988764 46788999999999999999999999999874 45 4567888888
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC--
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN-- 1296 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~-- 1296 (1991)
++...|++++ .+.|++.++ +.| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 585 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTS 585 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC------
T ss_pred HHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCC
Confidence 8999999999 999999876 566 467899999999999999999999999987434456788888888766555
Q ss_pred ---hhHHHHHHHHHHhcCCCCchHH
Q 040435 1297 ---TELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1297 ---~e~A~~~~e~llel~P~~~~~y 1318 (1991)
.+...++.+.+.++.+.++..+
T Consensus 586 ~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 586 EVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp -CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred CCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 3555566666666666655544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.4e-06 Score=90.33 Aligned_cols=73 Identities=11% Similarity=-0.053 Sum_probs=49.7
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--chHHHHHHHHHHhCCCchhHHHHH
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN--SAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~--~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
|.+.+++..+..+.+...|..+..++...|+.++|...++++++.+|+. +..+..++.+|...|+.++|....
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 4555555544334456777777777777777777777777777777764 446777777777777777766543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-05 Score=82.63 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+......+.+.|++++|++.|++.++ +.| +...|..+..+|.+.|++++|++.+++..+..+.+..+|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 455666777888888888888888776 455 4678888888888888888888888887764456788888899999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
...|++++|...++++++++|+++.++..|+++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998888777665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-05 Score=89.00 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=116.4
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-CHhHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K-NIVSWSA----------------MVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT 1214 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~----------------LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~ 1214 (1991)
.+.+.|++++|...|++..+ | +...|.. +...|.+.|++++|+..|++..+.. +-+...+
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 91 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCL 91 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 44556777777777766653 2 2334444 8889999999999999999998743 2356788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCC--HHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGE--LDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~--~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
..+..++...|++++|.+.|++.++ +.|+ ...|..+..+|...|. .++|...++.... ..|....|..+..++
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHH
Confidence 8888999999999999999999987 5774 7788888888876654 4556666666542 223334556667777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1292 RSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
...|++++|+..+++++++.|+..
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCHH
Confidence 888999999999999999999754
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.9e-05 Score=78.02 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
...+..+...+...|++++|.++++.+.+. ...+...+..+...+.+.|++++|..+++++....+.+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666667777788888888888877653 122466778888888888899999888888776445678889999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+...|+.+.|...+++++++.|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998888887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-06 Score=91.34 Aligned_cols=115 Identities=13% Similarity=-0.003 Sum_probs=99.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+...|++++|++.++.... ..|+ ...+-.+..+|.+.|++++|.+.+++..+..+.+..+|..|...+...|+.+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34566889999999987643 4453 4456678999999999999999999998755668999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
.|+..++++++++|+++.++..++.+|...|++++++..
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999999999999999999999987654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.3e-05 Score=84.99 Aligned_cols=130 Identities=8% Similarity=-0.020 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDML 1257 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l 1257 (1991)
+..+...+...|++++|++.|++. +.|+...+..+..++...|++++|.+.++..++. .| +...|..+..+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHH
Confidence 334455555666666666666554 2455566666666666666666666666666542 33 355666666677
Q ss_pred HHcCCHHHHHHHHHHCccCCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1258 ARAGELDIAIDLINQMPDNLKAT----------------ASAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd----------------~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
.+.|++++|.+.++++.+..+.+ ..+|..+..++...|+.+.|...+++++++.|++.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 77777777777776665432222 37888888899999999999999999999999763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0011 Score=85.15 Aligned_cols=368 Identities=10% Similarity=-0.024 Sum_probs=208.7
Q ss_pred cC-ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHH
Q 040435 885 SA-EAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKD-TDSA 962 (1991)
Q Consensus 885 ~G-~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~-~e~A 962 (1991)
.| +...|..+|+.+... -|. ++.+.++++|+..+.. .|++.+|...+..-.+.+. .+..
T Consensus 7 ~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp -----CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred cCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 45 367777777777653 232 8899999999988874 4688888888887777663 3445
Q ss_pred HHHhccCC------CCCHhHHHHHHHHHH----hcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 040435 963 FKVFSEMP------QKNKVSWNSALSGLV----VNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVH 1032 (1991)
Q Consensus 963 ~~lf~~m~------~~dv~s~n~LI~a~~----~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~ 1032 (1991)
..+|+... ..+...|...+.-+. .+++.+.+..+|++.......--...|..... +....+...+..+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 55555432 235677877776543 24567788888888876321111111111111 11111111111111
Q ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC----CchhhhhHHHHhhhhcCC-------hHHHHHHHHHH
Q 040435 1033 CVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK----PDVVLWSTMIAGFTLCGR-------PREAIAVFQEM 1101 (1991)
Q Consensus 1033 ~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~----~d~~syn~LI~~y~~~g~-------~eeAl~lf~~M 1101 (1991)
. -+. +.+..|+.+++.+.. .+...|...+.--..++. .+.+..+|+++
T Consensus 147 ~-------------------~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 G-------------------DTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp H-------------------HHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred H-------------------HHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1 111 122233333332221 233456555443222211 23466778877
Q ss_pred HHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHH-HHHHHhcc--------
Q 040435 1102 NQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEAS-RKAFDQIS-------- 1172 (1991)
Q Consensus 1102 ~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A-~~lf~~m~-------- 1172 (1991)
.... .-+...+...+.-+...|+.+.|+.+++.+++. +.+..++- .|+.....++. ..+.+...
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 7642 334555555566667778888888888888887 43433332 23332111111 11111110
Q ss_pred ----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 040435 1173 ----RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLS--VLSACSHGGLVEEGLSFFNSMVQDHGVEPA 1246 (1991)
Q Consensus 1173 ----~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~--LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~ 1246 (1991)
......|-..+..+.+.+..+.|..+|++. ... ..+...|.. .+.. ...++.+.|..+|+..++.++- +
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~-~~~~d~~~ar~ife~al~~~~~--~ 353 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY-YATGSRATPYNIFSSGLLKHPD--S 353 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH-HHHCCSHHHHHHHHHHHHHCTT--C
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH-HHCCChHHHHHHHHHHHHHCCC--C
Confidence 011245777777777778899999999988 321 223444432 2221 1234689999999988876432 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
...+...++...+.|+.+.|..+++++.. ....|...+.--..+|+.+.+..++++.++
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566678888888999999999999852 567888888888888998888888888765
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=86.28 Aligned_cols=100 Identities=6% Similarity=-0.091 Sum_probs=81.9
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHH
Q 040435 1242 GVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLL 1320 (1991)
Q Consensus 1242 gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvl 1320 (1991)
.+.|+ ...+..+...+.+.|++++|.+.|+++....+.+...|..|..++...|++++|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35563 56677788888888888888888888876555678888888888888899999999999999999988888888
Q ss_pred HHHHHHhCCCchhHHHHHHHH
Q 040435 1321 ASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1321 L~~lya~~G~~~ea~~vr~~m 1341 (1991)
++.+|...|++++|....+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 899999999988888765543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.7e-05 Score=77.96 Aligned_cols=118 Identities=13% Similarity=-0.004 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHH
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLS 1289 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~ 1289 (1991)
...+..+...+...|++++|.+.++...+. .| +...+..+...+...|++++|.+.+++.....+.+..+|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345566666777788888888888877653 34 56777888888888889999888888876644556888999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCc
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
.+...|+.+.|...+++++++.|+++..+..++.+|...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.8e-05 Score=85.39 Aligned_cols=127 Identities=13% Similarity=0.000 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.+..+...+...|++++|.+.|+.. +.|+...|..+...|.+.|++++|.+.+++.....+.+..+|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3445566778999999999999876 46788999999999999999999999999987655667899999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCc----------------hHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1293 SYGNTELGAGATSRILELEAQNS----------------AGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~----------------~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
..|+++.|...+++++++.|.+. ..+..++.+|...|++++|........+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999999888877 88999999999999999999877655443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00011 Score=83.90 Aligned_cols=185 Identities=12% Similarity=0.024 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHhcccc--chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCH----hHHHHH
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAIRRCLAE--EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KNI----VSWSAM 1182 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~--d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~----~s~n~L 1182 (1991)
..+..+...+...|+++.|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344455667888999999999999999864322 235677788999999999999999999864 432 244445
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 040435 1183 VAAYGM------------------NGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGV 1243 (1991)
Q Consensus 1183 I~ay~~------------------~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi 1243 (1991)
..+|.. .|+.++|+..|+++.+. .|+.. ...... . ...+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHH------
Confidence 555544 34566666666666543 23322 111100 0 00000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1244 EPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA---SAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1244 ~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~---~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
......+...|.+.|++++|...++++.+..+.+. .++..+..++...|+.+.|...++++.+..|++..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01223567788999999999999999877443343 57888999999999999999999999999887643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.4e-05 Score=78.85 Aligned_cols=118 Identities=10% Similarity=0.061 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHH
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALL 1288 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll 1288 (1991)
+...+..+...+...|++++|.++++..++ ..| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 344566666677777777777777777654 344 4667777777888888888888888877664455778898999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
.++...|+.+.|...++++++++|.+...+..++.+|...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988887664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.8e-05 Score=82.61 Aligned_cols=156 Identities=12% Similarity=0.024 Sum_probs=121.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA-CSH 1223 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a-c~~ 1223 (1991)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34456678889999999999998875 46788999999999999999999999998653 3444333222111 122
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC---CHHHHHHHHHHHHHcCChhH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA---TASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p---d~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
.+...+|.+.++..++ ..| +...+..+..+|.+.|++++|.+.++++.+. .| +...|..|...+...|+.++
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCCCc
Confidence 2233357888888876 567 4788999999999999999999999998764 33 35689999999999999999
Q ss_pred HHHHHHHHHh
Q 040435 1300 GAGATSRILE 1309 (1991)
Q Consensus 1300 A~~~~e~lle 1309 (1991)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0009 Score=80.22 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------H
Q 040435 1159 GAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAH--EALALVAEMKLGGLQPNAVTTLSVLSACSHGGL------V 1227 (1991)
Q Consensus 1159 G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~--eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~------~ 1227 (1991)
+++++++.+++.+.+ ++..+|+--.-.+.+.|.++ ++++.+++|.+... -|...|+.-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 567777777776654 46667777666667777766 77777777776542 245555554444555554 7
Q ss_pred HHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHCccCC---CCCHHHHHHHHHHHHHcCChhHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGEL-DIAIDLINQMPDNL---KATASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~-eeA~~l~~~m~~~~---~pd~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
++++++++.++. ..| +...|+-+-.++.+.|+. +++.++.++..+.. +.+..++..|..++...|+.++|.+
T Consensus 203 ~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 777777777765 345 466677777777777763 33555666654321 3466777777777777777777777
Q ss_pred HHHHHHh-cCCCCchHHHHHH
Q 040435 1303 ATSRILE-LEAQNSAGYLLAS 1322 (1991)
Q Consensus 1303 ~~e~lle-l~P~~~~~yvlL~ 1322 (1991)
+++++.+ ++|.....+...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 7777775 6777666555443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=84.97 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
...+..+...+.+.|++++|...+++.....+.+...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455555566666666666666666554334455666666666666666666666666666666666666666666666
Q ss_pred hCCCchhHHHHHH
Q 040435 1327 AGGLWVESSGTRL 1339 (1991)
Q Consensus 1327 ~~G~~~ea~~vr~ 1339 (1991)
..|++++|.....
T Consensus 101 ~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 101 QXGELAEAESGLF 113 (148)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 6666666665443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.97 E-value=8.9e-05 Score=79.10 Aligned_cols=125 Identities=6% Similarity=0.024 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+..+...+...|++++|...|+..++ ..| +...+..+..++.+.|++++|.+.+++.....+.+..+|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 355555666777888888888877765 344 4677778888888888888888888887664455778888888899
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHH--HHHHHhCCCchhHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLA--SSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL--~~lya~~G~~~ea~~vr~~ 1340 (1991)
...|+.+.|...+++++++.|.++..+..+ +..+...|++++|......
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999988877555 4447888999998876553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=3e-05 Score=80.27 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=90.1
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1243 VEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1243 i~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
+.|+ ...+......|.+.|++++|++.|++..+..+.+..+|..+..++...|+.+.|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 6675 467888899999999999999999998875567899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHH
Q 040435 1322 SSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1322 ~~lya~~G~~~ea~~vr~~m 1341 (1991)
+.+|...|++++|....+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999876543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=7.2e-05 Score=89.14 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=122.8
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL- 1218 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL- 1218 (1991)
.+......+...+.+.|++++|...|++..+ | +...+..+...|.+.|++++|+..+++.... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3444455666777788899999998887753 3 5678888888899999999999999887653 46554332222
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHHHcC
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACRSYG 1295 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~~~g 1295 (1991)
..+...+..++|.+.+++.++ ..| +...+..+..+|.+.|++++|.+.++++....+.+ ...+..|+..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 235566777788888888776 456 47788889999999999999999999887632323 678999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 040435 1296 NTELGAGATSRILE 1309 (1991)
Q Consensus 1296 ~~e~A~~~~e~lle 1309 (1991)
+.+.|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999988888764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00042 Score=83.06 Aligned_cols=193 Identities=13% Similarity=0.107 Sum_probs=152.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHhccC---CCHhHHHHHHHHH----HHc---CCHHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1147 VGTAVVDMYAKCG--AIEASRKAFDQISR---KNIVSWSAMVAAY----GMN---GLAHEALALVAEMKLGGLQPNAVTT 1214 (1991)
Q Consensus 1147 v~naLI~~y~k~G--~~e~A~~lf~~m~~---~d~~s~n~LI~ay----~~~---G~~~eAl~lf~eM~~~Gi~Pd~~T~ 1214 (1991)
+++.--..+...| +++++++.++.+.. ++..+|+.--..+ ... +++++++++++++.+.. +-|...|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3444444445556 88999999988764 3556777765555 555 78999999999999854 3367778
Q ss_pred HHHHHHHHhcCCHH--HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHCccCCCCCHHHHH
Q 040435 1215 LSVLSACSHGGLVE--EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGE------LDIAIDLINQMPDNLKATASAWG 1285 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e--~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~------~eeA~~l~~~m~~~~~pd~~~~~ 1285 (1991)
..-.....+.|..+ +++++++.+++ ..| +-..|+....++.+.|+ +++++++++++....+-|..+|+
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~ 224 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN 224 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHH
Confidence 77777778888888 99999999987 355 56677777777777777 99999999998876677999999
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHhcC---CCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1286 ALLSACRSYGN-TELGAGATSRILELE---AQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1286 ~Ll~a~~~~g~-~e~A~~~~e~llel~---P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
-+...+...|+ .+.....++++++++ |.++.+...++.+|...|+.++|.++...+.+
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999887 455667888888877 88889999999999999999999998887764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00024 Score=80.47 Aligned_cols=160 Identities=10% Similarity=-0.019 Sum_probs=86.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhHHhcCCCCCHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGG----LVEEGLSFFNSMVQDHGVEPALEHY 1250 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G----~~e~A~~i~~~M~~~~gi~P~~~~y 1250 (1991)
+..++..|...|...+++++|+++|++..+.| +...+..|-..+.. | +.++|.++|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44555555555555566666666666655543 33444444444444 4 566666666655331 134455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHCccCCCCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1251 SCMVDMLAR----AGELDIAIDLINQMPDNLKAT---ASAWGALLSACRS----YGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1251 ~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd---~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
..|..+|.. .+++++|.+++++..+. .+. +.++..|...|.. .++.++|...++++.++ |.++.++.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 555555554 55666666666665542 221 4566666666655 55666666666666666 44555566
Q ss_pred HHHHHHHhC-C-----CchhHHHHHHHHHHc
Q 040435 1320 LASSMYAAG-G-----LWVESSGTRLLAKER 1344 (1991)
Q Consensus 1320 lL~~lya~~-G-----~~~ea~~vr~~m~~~ 1344 (1991)
.|+.+|... | +.++|....+.-.+.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666666543 2 555555554443333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.4e-05 Score=86.24 Aligned_cols=155 Identities=8% Similarity=-0.023 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHHHhcCCHHHHHHHHHHhHHhc
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLS----------------VLSACSHGGLVEEGLSFFNSMVQDH 1241 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~----------------LL~ac~~~G~~e~A~~i~~~M~~~~ 1241 (1991)
+-.....+...|++++|+..|++..+. .|+.. .+.. +..++...|++++|...|+..++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-- 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 334455677888888888888888763 45433 3444 45555666666666666666654
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCCCchHH
Q 040435 1242 GVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN--TELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1242 gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~--~e~A~~~~e~llel~P~~~~~y 1318 (1991)
+.| +...+..+..+|.+.|++++|.+.+++..+..+.+..+|..|...+...|+ .+.+...+++++...|.. ..+
T Consensus 83 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 83 -KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp -HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred -HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 344 355566666666666666666666666555334455566666665544432 233344444443322211 123
Q ss_pred HHHHHHHHhCCCchhHHHHHH
Q 040435 1319 LLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..++..+...|++++|.....
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHH
Confidence 445555555666666555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.4e-05 Score=89.37 Aligned_cols=221 Identities=9% Similarity=-0.021 Sum_probs=150.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHH
Q 040435 1088 CGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKA 1167 (1991)
Q Consensus 1088 ~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~l 1167 (1991)
.|++++|.+++++..+..- .. + +...++++.|...+.. ....|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHHH
Confidence 5678889998887765311 10 0 1113566666555543 34567788999999888
Q ss_pred HHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1168 FDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGG---LQPN--AVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1168 f~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G---i~Pd--~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...+.. |++++|+++
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887653 11 3578888899999999999999998875421 1122 3467777778877 999999999
Q ss_pred HHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CC--CC-HHHHHHHHHHHHHcCChhHHHHH
Q 040435 1234 FNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---LK--AT-ASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1234 ~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~--pd-~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
|++.++.+.-..+ ...+..+..+|.+.|++++|.+.+++.... .. +. ...|..++..+...|+.+.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988763211111 467888999999999999999999987642 11 11 23666777777888999999999
Q ss_pred HHHHHhcCCCCchH-----HHHHHHHHHhCCCchhHHH
Q 040435 1304 TSRILELEAQNSAG-----YLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1304 ~e~llel~P~~~~~-----yvlL~~lya~~G~~~ea~~ 1336 (1991)
+++++ +.|..... ...++..| ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99975432 23334444 4566544444
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00034 Score=83.32 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCcc------CCCC-CHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPD------NLKA-TASAWG 1285 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~------~~~p-d~~~~~ 1285 (1991)
+...+...|++++|.+.++.+.+...-.++ ...|+.+...|.+.|++++|.+.++++.+ ...+ ...+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333334444555555555555431111111 12355555555555555555555554432 0011 123555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCC------chHHHHHHHHHHhCCC-chhHHH
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQN------SAGYLLASSMYAAGGL-WVESSG 1336 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~------~~~yvlL~~lya~~G~-~~ea~~ 1336 (1991)
.+...|...|++++|...+++++++.+.. +..|..++.+|...|+ +++|..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 55666666666666666666665544322 4455666666666663 355554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.7e-05 Score=91.59 Aligned_cols=226 Identities=8% Similarity=-0.089 Sum_probs=134.7
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHH
Q 040435 1022 FVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEM 1101 (1991)
Q Consensus 1022 ~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M 1101 (1991)
.|++++|..++....+..-. . + +...++++.|...|.+. ...|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 34566666666665543211 0 1 11146677776666543 34566667777777777665
Q ss_pred HHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-------C
Q 040435 1102 NQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-------K 1174 (1991)
Q Consensus 1102 ~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-------~ 1174 (1991)
.+. +.+.++... -...++.+...|.+.|++++|...|++..+ +
T Consensus 63 l~~---------------~~~~~~~~~---------------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 63 AEA---------------HANNRSLFH---------------AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHH---------------HHHTTCHHH---------------HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHH---------------HHHcCCHHH---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 431 011111110 123445556666677777777666665432 1
Q ss_pred --CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-
Q 040435 1175 --NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-N----AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA- 1246 (1991)
Q Consensus 1175 --d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~- 1246 (1991)
-..+|+.+...|.. |++++|+..|++..+..... + ..++..+...+...|++++|+++|++.++...-.+.
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 13467777778877 88999988888876421100 1 346777788888999999999999888763211111
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC------HHHHHHHHHHHHHcCChhHHHH
Q 040435 1247 ---LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT------ASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1247 ---~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd------~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
...+..++.++...|++++|...+++.. . .|+ ......++.++ ..|+.+....
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~-~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S-IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T-STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C-CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2356667777888899999999999876 3 332 12344555555 4567655554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0002 Score=85.37 Aligned_cols=160 Identities=11% Similarity=-0.033 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCC--H
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA-----VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGV--EPA--L 1247 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~-----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi--~P~--~ 1247 (1991)
..+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|.+.++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555667778888899998888887764322111 12333445567788999999998887643211 111 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCcc---CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------C
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPD---NLKAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQ------N 1314 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~---~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~------~ 1314 (1991)
..|..+...|...|++++|.+.++++.+ ..+.+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5788889999999999999999988762 22222 258888999999999999999999999887543 1
Q ss_pred chHHHHHHHHHHhCCCchhH-HH
Q 040435 1315 SAGYLLASSMYAAGGLWVES-SG 1336 (1991)
Q Consensus 1315 ~~~yvlL~~lya~~G~~~ea-~~ 1336 (1991)
...|..++.+|...|++++| ..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHH
Confidence 56788999999999999998 55
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.90 E-value=4.4e-05 Score=93.30 Aligned_cols=155 Identities=12% Similarity=0.003 Sum_probs=112.7
Q ss_pred CHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 1160 AIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNS 1236 (1991)
Q Consensus 1160 ~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~ 1236 (1991)
++++|...|+...+ | +...|..+...|.+.|++++|+..|++..+.. |+...+ ..+++.+.-.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~- 193 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA- 193 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH-
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH-
Confidence 34444444443322 2 44567777777777888888888887776632 322100 0011111110
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1237 MVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1237 M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
+ ....|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|++++|...++++++++|+++.
T Consensus 194 ~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 L--------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp H--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred H--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 0 14578888889999999999999999887755668899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchhHHH
Q 040435 1317 GYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1317 ~yvlL~~lya~~G~~~ea~~ 1336 (1991)
++..++.+|...|+++++.+
T Consensus 266 a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999854
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00053 Score=81.56 Aligned_cols=203 Identities=8% Similarity=-0.025 Sum_probs=141.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchh---HHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040435 1097 VFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVA---VGTAVVDMYAKCGAIEASRKAFDQISR 1173 (1991)
Q Consensus 1097 lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~---v~naLI~~y~k~G~~e~A~~lf~~m~~ 1173 (1991)
.+.++......|+..++..+...+.-.- ..+.......+.. .+...+..+.+.|++++|...+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 4455544445788777766666554321 1111211122222 233347788899999999999998764
Q ss_pred C-----C----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1174 K-----N----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-PN----AVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1174 ~-----d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-Pd----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
. + ...+..+...+...|++++|+..|++..+.... ++ ..+++.+..++...|++++|.++|+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2 123334666677778999999999999874322 23 23688888999999999999999999875
Q ss_pred hcC----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----CCC-CHHHHHHHHHHHHHcCC-hhHHHHHHHHH
Q 040435 1240 DHG----VEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDN-----LKA-TASAWGALLSACRSYGN-TELGAGATSRI 1307 (1991)
Q Consensus 1240 ~~g----i~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~~p-d~~~~~~Ll~a~~~~g~-~e~A~~~~e~l 1307 (1991)
... ..+. ...|..+...|.+.|++++|.+.+++..+. ..+ -..+|..+..++...|+ .+.|...++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 321 1222 347889999999999999999999987641 111 26789999999999995 69999999887
Q ss_pred H
Q 040435 1308 L 1308 (1991)
Q Consensus 1308 l 1308 (1991)
+
T Consensus 264 l 264 (293)
T 3u3w_A 264 S 264 (293)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00025 Score=70.40 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1212 VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
..+..+...+...|++++|.+.++...+. .| +...+..+...+.+.|++++|.+.+++..+..+.+...|..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666667777777777777777653 34 466777777888888888888888887765445567788888888
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+...|+.+.|...++++++++|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88889999999999999999998888777776654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00022 Score=74.37 Aligned_cols=115 Identities=10% Similarity=-0.029 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHH
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWG 1285 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~ 1285 (1991)
+...+..+...+...|++++|.++|+..++ +.|+ ...|..+...|.+.|++++|.+.+++.....+.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555556666666777777776666643 4555 456777777788888888888888777654445678888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
.+..++...|+.+.|...++++++++|+++..+..+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888899999999999999999999999988877777766544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.80 E-value=0.026 Score=72.36 Aligned_cols=200 Identities=12% Similarity=-0.000 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH-HHHHHhc
Q 040435 992 EALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELA-WKLFNDV 1070 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A-~~lf~~m 1070 (1991)
.+..+|+++.... .-+...|...+.-+...|+.+.|..+++.+++. +.+...+. .|+...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 4556666665432 223445555555556667777777777777776 33322222 22222111111 1111111
Q ss_pred C------------CCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhhccChHHHHHHHHHH
Q 040435 1071 K------------KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITII--NLLEACSVATELSSSKWAHGIA 1136 (1991)
Q Consensus 1071 ~------------~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~--~lL~a~a~~g~le~a~~i~~~~ 1136 (1991)
. ......|-..+..+.+.+..+.|..+|.+. +.. ..+...|. +.+... ..++.+.|+.+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHHHH
Confidence 0 001133444444444555566666666665 211 11222222 111111 122456666666666
Q ss_pred HHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040435 1137 IRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMK 1203 (1991)
Q Consensus 1137 ~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~ 1203 (1991)
++.. +.+...+...++...+.|+.+.|+.+|+.+. .....|...+.--..+|+.+.+.++++++.
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5543 2223334445555556666666666666653 234555555555555566555555555554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00057 Score=77.28 Aligned_cols=173 Identities=6% Similarity=-0.097 Sum_probs=133.1
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CCHhHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q 040435 1130 KWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-KNIVSWSAMVAAYGMNG----LAHEALALVAEMKL 1204 (1991)
Q Consensus 1130 ~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~~G----~~~eAl~lf~eM~~ 1204 (1991)
.+.+....+.| +...+..|..+|...+++++|...|++..+ .+...+..|...|.. + +.++|+++|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 34444444443 556667777888888999999999988765 466778888887777 6 89999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHC
Q 040435 1205 GGLQPNAVTTLSVLSACSH----GGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLAR----AGELDIAIDLINQM 1273 (1991)
Q Consensus 1205 ~Gi~Pd~~T~~~LL~ac~~----~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r----~G~~eeA~~l~~~m 1273 (1991)
.| +...+..|-..+.. .+++++|.++|+...+ ..|. ...+..|..+|.. .+++++|.+++++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65 56667777777766 7899999999998754 4453 6788889999988 88999999999998
Q ss_pred ccCCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHhcCCC
Q 040435 1274 PDNLKATASAWGALLSACRSY-G-----NTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1274 ~~~~~pd~~~~~~Ll~a~~~~-g-----~~e~A~~~~e~llel~P~ 1313 (1991)
.+. ..+...+..|...|... | |.++|...++++.+.+..
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 763 34666788888887653 3 899999999999888653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0001 Score=80.28 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=101.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH-HHHcCCH-
Q 040435 1187 GMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDM-LARAGEL- 1263 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~-l~r~G~~- 1263 (1991)
...|++++|+..+++..+.. +.+...+..+...+...|++++|..+|+...+ +.| +...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ---LRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45677888888888877643 34567788888888889999999999988876 344 56677788888 7788998
Q ss_pred -HHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1264 -DIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1264 -eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
++|...++++....+.+..+|..+...+...|+.+.|...+++++++.|+++....++
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999988765455788899999999999999999999999999999887654433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=77.31 Aligned_cols=89 Identities=13% Similarity=-0.084 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+..+...+.+.|++++|.+.+++.....+.+...|..+..++...|+++.|...++++++++|+++..+..++.+|...|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 33344444445555555555544443223344445555555555555555555555555555555555555555555555
Q ss_pred CchhHHHHH
Q 040435 1330 LWVESSGTR 1338 (1991)
Q Consensus 1330 ~~~ea~~vr 1338 (1991)
++++|....
T Consensus 101 ~~~~A~~~~ 109 (142)
T 2xcb_A 101 DLDGAESGF 109 (142)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555544433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=6.6e-05 Score=79.97 Aligned_cols=105 Identities=11% Similarity=-0.018 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1212 VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
..+..+...+...|++++|...|+..++ +.| +...|..+..+|.+.|++++|.+.++++....+.+...|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3456666777888999999999988876 455 577788888899999999999999998876445577899999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
+...|+.++|...+++++++.|+++....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999998877543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00018 Score=77.47 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHH
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLS 1289 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~ 1289 (1991)
...+..+...+...|++++|.++|+..++ +.| +...|..+..+|.+.|++++|++.+++..+..+.+..+|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44566677778888888888888888876 455 57788888999999999999999999887755567889999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
++...|+++.|...++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999877665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00047 Score=82.04 Aligned_cols=164 Identities=8% Similarity=-0.036 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC--C-C------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR--K-N------IVSWSAMVAAYGMNGLAHEALALVAEMKLGGL---QPN--AV 1212 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi---~Pd--~~ 1212 (1991)
.+...+..|...|++++|.+.+.+..+ + . ...+..+...|...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788899999999999876543 1 1 12344455667778899999999999875321 122 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----C-CCCH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIAIDLINQMPDN-----L-KATA 1281 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~-~pd~ 1281 (1991)
+++.+...|...|++++|.+++++..+.....|+ ...|..+...|.+.|++++|.+.+++..+. . ..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988743222333 258888999999999999999999887541 1 1126
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHhc
Q 040435 1282 SAWGALLSACRSYGNTELG-AGATSRILEL 1310 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A-~~~~e~llel 1310 (1991)
.+|..+...+...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999 7778888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.74 E-value=9e-05 Score=80.78 Aligned_cols=119 Identities=10% Similarity=0.083 Sum_probs=100.4
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH-HHHcCCh--
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA-CRSYGNT-- 1297 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a-~~~~g~~-- 1297 (1991)
...|++++|.+.++..++. .| +...|..+..+|...|++++|.+.++++....+.+...|..+..+ +...|+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3568889999999988763 45 578899999999999999999999999876445578899999988 7889998
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1298 ELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
+.|...++++++++|+++..+..++.+|...|++++|........+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987765543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.72 E-value=6.5e-05 Score=89.29 Aligned_cols=188 Identities=7% Similarity=-0.078 Sum_probs=130.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSAC 1221 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac 1221 (1991)
...+..+...|.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556677788899999999999998764 4 67889999999999999999999999988743 23566788888899
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEPAL-EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P~~-~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
...|++++|.+.|+...+ +.|+. ..+..++....+.++...... .... ..+.+..+...+ ..+. .|+.+.|
T Consensus 83 ~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEER--RIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHT--CCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHH--HHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 999999999999998865 33321 111122222222222122222 2222 234455555444 3333 6899999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhC-CCchhHHHHHHHH
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAG-GLWVESSGTRLLA 1341 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~-G~~~ea~~vr~~m 1341 (1991)
.+.++++++++|++......+..++... ++++++.++....
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887777777777776 6777777766543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0001 Score=79.00 Aligned_cols=100 Identities=10% Similarity=-0.015 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+..+...+...|++++|.+.|+..++ +.| +...|..+..+|.+.|++++|.+.++++....+.++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555666677777777777777765 455 4667777777777888888888887777664455677888888888
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1292 RSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
...|+.++|...+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00032 Score=71.64 Aligned_cols=110 Identities=11% Similarity=-0.049 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+..+...+...|++++|.+.|+..++ +.| +...|..+..+|.+.|++++|.+.+++..+..+.+..+|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 445555666677777777777777665 344 4567777777777778888887777777654445677788888888
Q ss_pred HHcCChhHHHHHHHHHHhcC------CCCchHHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELE------AQNSAGYLLASSMY 1325 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~------P~~~~~yvlL~~ly 1325 (1991)
...|++++|...++++++++ |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888888 77766666655543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=73.21 Aligned_cols=95 Identities=11% Similarity=0.005 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
...+..+...+.+.|++++|.+.+++..+..+.+..+|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35677788899999999999999999877556688999999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHH
Q 040435 1327 AGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1327 ~~G~~~ea~~vr~~m 1341 (1991)
..|++++|.......
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 999999999866543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00024 Score=74.67 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+..+...+...|++++|.+.|+..++ ..| +...|..+..+|.+.|++++|...+++.....+.+...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 445555677788889999988888876 455 5677888888899999999999999988765556778899999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
...|+.+.|...+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999888766554433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00074 Score=67.51 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
...|..+...+...|++++|+++|+++.+.. +.+..++..+...+...|++++|..+++.+.+. ...+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4566667777777777777777777776542 234566667777777777888888777777653 1224667777777
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
+|.+.|++++|.+.++++.+..+.+...+..+...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 78888888888888777765334455566555555443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=75.17 Aligned_cols=93 Identities=10% Similarity=-0.105 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
.+..+...+.+.|++++|...++++.+..+.+...|..|..++...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35566778889999999999999887755668889999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHH
Q 040435 1329 GLWVESSGTRLLA 1341 (1991)
Q Consensus 1329 G~~~ea~~vr~~m 1341 (1991)
|++++|.......
T Consensus 99 g~~~~A~~~~~~a 111 (121)
T 1hxi_A 99 HNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999988766543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0008 Score=71.52 Aligned_cols=129 Identities=9% Similarity=-0.090 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVD 1255 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~ 1255 (1991)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++..++. .| +...|..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 456666677777777888887777776642 235666677777777788888888888777653 34 4667777777
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHh
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSA--CRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a--~~~~g~~e~A~~~~e~lle 1309 (1991)
++.+.|++++|.+.++++.+..+.+...|..+..+ +...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888877765434455556443333 6667778888777776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00035 Score=77.80 Aligned_cols=165 Identities=10% Similarity=-0.092 Sum_probs=108.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGL 1226 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~ 1226 (1991)
..+.+....|+++.|.+.++.-.. .....|..+...+...|++++|+..|++..+.. |+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------h
Confidence 344445555777777777764432 234567777777888888888888888877632 221100000 0
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1227 VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1227 ~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
.+.- ...+ ....|..+..+|.+.|++++|...+++.....+.+..+|..+..++...|+++.|...+++
T Consensus 79 ~~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000 0000 1356777888888999999999999888765556788999999999999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1307 ILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1307 llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
+++++|+++..+..++.++...|+.+++.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877766
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00034 Score=72.18 Aligned_cols=101 Identities=10% Similarity=-0.022 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHH
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALL 1288 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll 1288 (1991)
+...+..+...+...|++++|...|+..++ +.| +...|..+..+|.+.|++++|...+++.....+.+...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 344555555555555556666555555544 223 2445555555555555555555555555443333455555555
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.++...|+++.|...+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 5555555555555555555555554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00018 Score=70.74 Aligned_cols=95 Identities=16% Similarity=0.056 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CchHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQ--NSAGYLLASSM 1324 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~--~~~~yvlL~~l 1324 (1991)
...+..+...+.+.|++++|...++++.+..+.+..+|..+...+...|++++|...+++++++.|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3445556666677777777777777665534446667777777777777777777777777777777 77777777777
Q ss_pred HHhC-CCchhHHHHHHHH
Q 040435 1325 YAAG-GLWVESSGTRLLA 1341 (1991)
Q Consensus 1325 ya~~-G~~~ea~~vr~~m 1341 (1991)
|... |++++|.......
T Consensus 86 ~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HTTCSSCSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 7777 7777777655544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00034 Score=75.28 Aligned_cols=97 Identities=12% Similarity=-0.017 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+...+..+...+.+.|++++|.+.+++..+..+.+..+|..+..++...|++++|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35678888999999999999999999988755668899999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~m~ 1342 (1991)
...|++++|........
T Consensus 90 ~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 99999999998766443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00039 Score=68.91 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
...+..+...+.+.|++++|.+.+++.....+.+...|..+...+...|+++.|...+++++++.|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677888999999999999999999876555688999999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHHHH
Q 040435 1327 AGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1327 ~~G~~~ea~~vr~~m~~ 1343 (1991)
..|++++|........+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999987765443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.001 Score=67.11 Aligned_cols=119 Identities=12% Similarity=-0.074 Sum_probs=86.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCM 1253 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~L 1253 (1991)
+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.++++...+. .| +...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHH
Confidence 34566677777778888888888888877642 235666777777778888888888888877653 44 46677788
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
..++.+.|++++|.+.+++..+..+.+...|..+..++...|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888877654445677777777777776654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00052 Score=70.75 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+...+..+...+.+.|++++|...+++.....+.+..+|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 35556666666666666666666666655433445666666666666666666666666666666666666666666666
Q ss_pred HhCCCchhHHHHHH
Q 040435 1326 AAGGLWVESSGTRL 1339 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~ 1339 (1991)
...|++++|.....
T Consensus 88 ~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 88 LEMESYDEAIANLQ 101 (137)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHH
Confidence 66666666665443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0019 Score=84.44 Aligned_cols=172 Identities=7% Similarity=-0.047 Sum_probs=143.8
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGL----------AHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~----------~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
...-++|.+.++.+.+ .+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3445778899988875 356788887777777777 999999999999854 33666788777788889
Q ss_pred C--CHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc------
Q 040435 1225 G--LVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAG-ELDIAIDLINQMPDNLKATASAWGALLSACRSY------ 1294 (1991)
Q Consensus 1225 G--~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G-~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~------ 1294 (1991)
| ++++++++++++++ +.| +...|+....++.+.| .+++|.++++++.+..+-|..+|......+...
T Consensus 121 ~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 77999999999987 456 5777888888889999 899999999999887777999999999988773
Q ss_pred --------CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1295 --------GNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1295 --------g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
+.++++.+.++++++++|++.++|..+..++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999988554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00077 Score=74.45 Aligned_cols=155 Identities=12% Similarity=-0.038 Sum_probs=97.4
Q ss_pred hcCCHHHHHH---HHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHH
Q 040435 1157 KCGAIEASRK---AFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKL----GGLQP-NAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1157 k~G~~e~A~~---lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~----~Gi~P-d~~T~~~LL~ac~~~G~~e 1228 (1991)
..|++++|.+ .+..-.......+..+...|...|++++|+..+++... .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 44332223456777777778888888888888877664 12112 2335666666777888888
Q ss_pred HHHHHHHHhHHhcCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCCC----HHHHHHHHHHHHHcCCh
Q 040435 1229 EGLSFFNSMVQDHGVEP-A----LEHYSCMVDMLARAGELDIAIDLINQMPDN--LKAT----ASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~pd----~~~~~~Ll~a~~~~g~~ 1297 (1991)
+|.+++++..+...-.+ + ...+..+..++.+.|++++|.+.+++.... ...+ ..++..+...+...|+.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877655322122 1 345667777788888888888877766431 0111 23456677777778888
Q ss_pred hHHHHHHHHHHhcC
Q 040435 1298 ELGAGATSRILELE 1311 (1991)
Q Consensus 1298 e~A~~~~e~llel~ 1311 (1991)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00029 Score=82.89 Aligned_cols=138 Identities=9% Similarity=-0.058 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHH
Q 040435 1180 SAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDML 1257 (1991)
Q Consensus 1180 n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l 1257 (1991)
-.....|...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...+. -.|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 34556677788888888888877653 365544444445677888888888888755321 0121 23567778888
Q ss_pred HHcCCHHHHHHHHHHCccCCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 040435 1258 ARAGELDIAIDLINQMPDNLK-A--TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLAS 1322 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~-p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~ 1322 (1991)
.+.|++++|++.+++...... | ....+..+..+++..|+.++|...++++++.+|+ +.....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999998864321 4 3347788888889999999999999999999998 66665554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00077 Score=74.45 Aligned_cols=153 Identities=10% Similarity=-0.022 Sum_probs=112.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHHHHHHHHcC
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH---GVEP-ALEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~---gi~P-~~~~y~~Li~~l~r~G 1261 (1991)
+...|++++|.++++.+.. ........+..+...+...|++++|..++++..+.. +..| ....+..+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3467999999996655543 222345678888888999999999999999886632 2222 2467888999999999
Q ss_pred CHHHHHHHHHHCccC---CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--Cc----hHHHHHHHHHHhC
Q 040435 1262 ELDIAIDLINQMPDN---LKAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQ--NS----AGYLLASSMYAAG 1328 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~---~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~--~~----~~yvlL~~lya~~ 1328 (1991)
++++|.+.+++.... ...+ ..++..+...+...|+++.|...+++++++.+. ++ ..+..++.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999887542 2212 456888888999999999999999999876432 22 2357889999999
Q ss_pred CCchhHHHHHH
Q 040435 1329 GLWVESSGTRL 1339 (1991)
Q Consensus 1329 G~~~ea~~vr~ 1339 (1991)
|++++|.....
T Consensus 161 g~~~~A~~~~~ 171 (203)
T 3gw4_A 161 KNLLEAQQHWL 171 (203)
T ss_dssp TCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99999987554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00057 Score=87.12 Aligned_cols=140 Identities=14% Similarity=0.005 Sum_probs=103.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
...|..+...|.+.|++++|+..|++.++. .|+...+ .-+...+ ...+ ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HHHH--------HHHHHHHHHH
Confidence 456777777777888888888888777652 1221100 0011111 0000 1457888899
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
+|.+.|++++|+..++++.+..+.+..+|..+..++...|+++.|...++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877556688999999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 040435 1336 GT 1337 (1991)
Q Consensus 1336 ~v 1337 (1991)
+-
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00049 Score=70.03 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+...+..+...+.+.|++++|.+.+++.....+.+..+|..+...+...|+.++|...++++++++|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 36778889999999999999999999987755568899999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~m~ 1342 (1991)
...|++++|........
T Consensus 95 ~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999998766543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.017 Score=69.98 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=9.8
Q ss_pred hcCChHHHHHHHHHHHH
Q 040435 1087 LCGRPREAIAVFQEMNQ 1103 (1991)
Q Consensus 1087 ~~g~~eeAl~lf~~M~~ 1103 (1991)
+.+..++|++++.++..
T Consensus 66 ~~e~se~AL~lt~~~L~ 82 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR 82 (349)
T ss_dssp TTCCSHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHH
Confidence 34444566666666655
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00037 Score=77.60 Aligned_cols=120 Identities=9% Similarity=-0.071 Sum_probs=58.3
Q ss_pred HHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CH----------------h
Q 040435 1117 LEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NI----------------V 1177 (1991)
Q Consensus 1117 L~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~----------------~ 1177 (1991)
.......+.++.+++.+....... ......+..+...|.+.|++++|...|++..+ | +. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334445566666666655333221 12344566778889999999999999998764 2 21 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
.|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|+..+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444444455555555555555444421 1223334444444444444444444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00066 Score=68.65 Aligned_cols=111 Identities=5% Similarity=-0.032 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCC---CCC----HHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNL---KAT----ASAWGA 1286 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~---~pd----~~~~~~ 1286 (1991)
+..+...+...|++++|..+++...+. ...+...+..+..+|.+.|++++|...++++.... .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444445555566666666666655542 11234556666666666666666666666654321 112 567777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
+..++...|+.+.|...+++++++.| ++.....+..++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 77778888888888888888888877 45555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.001 Score=81.17 Aligned_cols=94 Identities=11% Similarity=-0.041 Sum_probs=54.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN----------------IVSWSAMVAAYGMNGLAHEALALVAEMKLG 1205 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d----------------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~ 1205 (1991)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778889999999999999999998764 32 244555555555555555555555554442
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1206 GLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1206 Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
. +.+...+..+..++...|++++|++.|++.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 1133344444444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00074 Score=66.24 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC--CHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA--TASAWGALLS 1289 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~ 1289 (1991)
.+..+...+...|++++|...++..++. .| +...+..+..++.+.|++++|.+.++++.+..+. +..+|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4455556667777777777777777653 33 4667777888888888888888888887764444 6788888888
Q ss_pred HHHHc-CChhHHHHHHHHHHhcCCCCc
Q 040435 1290 ACRSY-GNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1290 a~~~~-g~~e~A~~~~e~llel~P~~~ 1315 (1991)
.+... |+.++|...++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 999999999999988888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0005 Score=70.96 Aligned_cols=92 Identities=4% Similarity=-0.115 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch-------HHHH
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA-------GYLL 1320 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~-------~yvl 1320 (1991)
..+..|...+.+.|++++|++.+++..+..+.+..+|..+..++...|+++.|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 356678888999999999999999887755667889999999999999999999999999999987653 6777
Q ss_pred HHHHHHhCCCchhHHHHHH
Q 040435 1321 ASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1321 L~~lya~~G~~~ea~~vr~ 1339 (1991)
++.+|...|++++|.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 8999999999999987654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00061 Score=69.68 Aligned_cols=98 Identities=15% Similarity=0.033 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
..+...+...|++++|...|+..++ ..| +...|..+..++.+.|++++|+..+++..+..+.+..+|..|..++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445566778888888888888876 456 567788888888888888888888888776445577888888888889
Q ss_pred cCChhHHHHHHHHHHhcCCCCc
Q 040435 1294 YGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
.|+.++|...++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888754
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00079 Score=83.29 Aligned_cols=138 Identities=7% Similarity=-0.086 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVD 1255 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~ 1255 (1991)
..|..+...|.+.|++++|++.|++.++. .|.. ......+ ... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~-------~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDA-------DGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHH-------HHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChH-------HHH---HHHHHHHHHHHHHHH
Confidence 45666777777777777777777776541 0100 0000111 110 1233 3567888999
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
+|.+.|++++|++.++++.+..+.+..+|..+..++...|++++|...++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987555678999999999999999999999999999999999999999999999988887765
Q ss_pred H
Q 040435 1336 G 1336 (1991)
Q Consensus 1336 ~ 1336 (1991)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00047 Score=88.41 Aligned_cols=117 Identities=7% Similarity=0.041 Sum_probs=98.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+...|++++|.+.+++.++ +.| +...|..+..+|.+.|++++|.+.+++..+..+.+..+|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 44577889999999988876 456 47888999999999999999999999988755667889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHH--HHhCCCchhHHHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSM--YAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~l--ya~~G~~~ea~~vr~ 1339 (1991)
+|+..++++++++|+++..+..++.+ |...|++++|.....
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999888 888899998887644
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00075 Score=72.35 Aligned_cols=81 Identities=10% Similarity=-0.021 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS-AGYLLASSMY 1325 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~-~~yvlL~~ly 1325 (1991)
...|..+..+|.+.|++++|...+++.....+.+..+|..+..++...|+++.|...++++++++|+++ .....|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 457888899999999999999999988775566788999999999999999999999999999999988 5555555544
Q ss_pred Hh
Q 040435 1326 AA 1327 (1991)
Q Consensus 1326 a~ 1327 (1991)
..
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0076 Score=73.10 Aligned_cols=230 Identities=11% Similarity=0.040 Sum_probs=163.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcC-CHHHHHHHH
Q 040435 1090 RPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG-AIEASRKAF 1168 (1991)
Q Consensus 1090 ~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G-~~e~A~~lf 1168 (1991)
++.+|...++.+...+.. -++|..+...++... +.+..+++.--..+...| .+++++..+
T Consensus 52 ~y~~~~~~~r~~~~~~e~------------------se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEK------------------SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC------------------SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456777777777665432 234556666666554 234455666666666778 599999999
Q ss_pred HhccC---CCHhHHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHH
Q 040435 1169 DQISR---KNIVSWSAMVAAYGMN-G-LAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE--------EGLSFFN 1235 (1991)
Q Consensus 1169 ~~m~~---~d~~s~n~LI~ay~~~-G-~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e--------~A~~i~~ 1235 (1991)
+.+.. ++..+|+.-...+.+. + ++++++++++++.+.. +-|...|..-.....+.|..+ +++++++
T Consensus 113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 98875 4677898888777776 7 8899999999998754 336666666555555555555 8999999
Q ss_pred HhHHhcCCCC-CHHHHHHHHHHHHHcCC-------HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh----------
Q 040435 1236 SMVQDHGVEP-ALEHYSCMVDMLARAGE-------LDIAIDLINQMPDNLKATASAWGALLSACRSYGNT---------- 1297 (1991)
Q Consensus 1236 ~M~~~~gi~P-~~~~y~~Li~~l~r~G~-------~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~---------- 1297 (1991)
++++. .| +...|+....++.+.|+ +++++++++++....+-|...|.-+-+.+...|+.
T Consensus 192 k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 192 EMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 99873 55 57778888888888876 79999999988775677999999988888877764
Q ss_pred ----------hHHHHHHHHHHhcC------CCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1298 ----------ELGAGATSRILELE------AQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1298 ----------e~A~~~~e~llel~------P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+.-......+.... +..+-+..+|+.+|...|+.++|.++.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22222222222222 4566777889999999999999999888775
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0018 Score=65.79 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=75.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC---HHHHHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPA-L---EHYSCMVDMLARAGELDIAIDLINQMPDNLKAT---ASAWGALLS 1289 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~---~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd---~~~~~~Ll~ 1289 (1991)
+...+...|++++|.+.|+.+++. .|+ . ..+..+..++.+.|++++|.+.++++....+.+ ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344556777788888887777653 332 2 466677778888888888888888776533334 667888888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
++...|+.+.|...++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88888999999999999998888877655544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00051 Score=88.11 Aligned_cols=190 Identities=9% Similarity=-0.018 Sum_probs=89.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGEL 1263 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~ 1263 (1991)
|.+.|++++|++.|++..+. .| +...+..+..++...|++++|.+.+++.++ +.| +...|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 34455555555555555542 22 344555555555556666666666655544 344 245555555566666666
Q ss_pred HHHHHHHHHCccCCCCCHHHHHHHHHH--HHHcCChhHHHHHHH-----------HHHhcCCCCchH-----------HH
Q 040435 1264 DIAIDLINQMPDNLKATASAWGALLSA--CRSYGNTELGAGATS-----------RILELEAQNSAG-----------YL 1319 (1991)
Q Consensus 1264 eeA~~l~~~m~~~~~pd~~~~~~Ll~a--~~~~g~~e~A~~~~e-----------~llel~P~~~~~-----------yv 1319 (1991)
++|.+.++++.+..+.+..+|..+..+ +...|++++|...++ ++++++|+..+. ..
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 666666655544222233344444444 555566666666665 555555443211 11
Q ss_pred HHHHHHHhCCCchhHHH--HHHHHHHcCCcccCcEEEEEEcCeEeEEEcCCCCCCCCchhHHHHHHH
Q 040435 1320 LASSMYAAGGLWVESSG--TRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLAC 1384 (1991)
Q Consensus 1320 lL~~lya~~G~~~ea~~--vr~~m~~~gi~k~~g~s~i~v~~~~~~F~~~d~~~~~p~~~~i~~~~~ 1384 (1991)
.+...+...++..+..- +....+ .-++++|....+.+......++.||. |-+..+....+.
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a~-eil~~e~~~~~~~~~~~~~~~vigDi---HG~~~~l~~~l~ 233 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQVK-EVLSKLSTLVETTLKETEKITVCGDT---HGQFYDLLNIFE 233 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHH-HHHHTSCSEEEECCCSSCEEEEECBC---TTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-HHHccCCCeEEeecCCCcceEEEeCC---CCCHHHHHHHHH
Confidence 22333444555544332 221111 12334555444443333445778885 544444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00031 Score=71.02 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
..|++++|+..|++.++...-.| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+.++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35777788888887764100024 35677888888888899999999888887655567888888888999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1302 GATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1302 ~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
..++++++..|+++........+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999998877554443333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0018 Score=76.14 Aligned_cols=183 Identities=8% Similarity=-0.066 Sum_probs=137.6
Q ss_pred hcCCHHHHHHHHHhccC--C-CHhHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------------
Q 040435 1157 KCGAIEASRKAFDQISR--K-NIVSWSAM-------VAAYGMNGLAHEALALVAEMKLGGLQPNAV-------------- 1212 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~--~-d~~s~n~L-------I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-------------- 1212 (1991)
..++.+.|.+.|.++.+ | ....|..+ ...+...++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999875 4 45789888 4666666666667666655443 333321
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC--CHH
Q 040435 1213 --------TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA--TAS 1282 (1991)
Q Consensus 1213 --------T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p--d~~ 1282 (1991)
....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..++.......| ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123455667889999999999998754 4564336666677899999999999999977642111 134
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcC--CC-CchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELE--AQ-NSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~--P~-~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
++..|..++...|+.++|+..++++.+-. |. .+...+.++.++.+.|+.++|..+.+.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78889999999999999999999998643 54 4557888999999999999999988877654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00051 Score=73.51 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=65.2
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CC
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEPA-------------LEHYSCMVDMLARAGELDIAIDLINQMPDN-------LK 1278 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P~-------------~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~ 1278 (1991)
..+...|++++|.+.|+..++ +.|+ ...|..+..++.+.|++++|+..+++..+. .+
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 344445555555555555543 2332 126666777777777777777777666553 33
Q ss_pred CCHHHH----HHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1279 ATASAW----GALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1279 pd~~~~----~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
.+...| ..+..++...|++++|+..|+++++++|++.+.+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456688 8888888999999999999999999988876643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00093 Score=67.50 Aligned_cols=97 Identities=7% Similarity=0.003 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------chHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN-------SAGYL 1319 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~-------~~~yv 1319 (1991)
...+..+...+.+.|++++|...++++....+.+..+|..+...+...|+++.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 35677888999999999999999999876556688899999999999999999999999999998877 78899
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1320 LASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1320 lL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
.++.+|...|++++|........+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999987765544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.02 Score=68.98 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=80.0
Q ss_pred HHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 040435 1161 IEASRKAFDQISR---KNIVSWSAMVAAYGMNGL--AHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGL-VEEGLSFF 1234 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~--~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~-~e~A~~i~ 1234 (1991)
+++++.+++.+.. ++..+|+.-...+.+.|+ ++++++++++|.+.. +-|...|+.-...+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555554432 345555555555555552 566666666666543 2244445444444455555 46666666
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHHHc--------------CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc-----
Q 040435 1235 NSMVQDHGVEP-ALEHYSCMVDMLARA--------------GELDIAIDLINQMPDNLKATASAWGALLSACRSY----- 1294 (1991)
Q Consensus 1235 ~~M~~~~gi~P-~~~~y~~Li~~l~r~--------------G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~----- 1294 (1991)
..+++ ..| +...|+....++.+. +.++++++++++.....+-|..+|+-+-+.+...
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 66654 233 344454444444443 3456666666665544445666665554444433
Q ss_pred ------CChhHHHHHHHHHHhcCCCCc
Q 040435 1295 ------GNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1295 ------g~~e~A~~~~e~llel~P~~~ 1315 (1991)
+.++.+...++++++++|++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 235566666666666666653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0017 Score=67.40 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
+...+..+...+.+.|++++|.+.+++..+. .|+ ..+|..+..++...|+++.|...+++++++.|+++..+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4678888999999999999999999998764 455 78899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHH
Q 040435 1322 SSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1322 ~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+.+|...|++++|........
T Consensus 106 a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999998766443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.002 Score=66.31 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCCC----HHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN---LKAT----ASAW 1284 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~pd----~~~~ 1284 (1991)
++..+...+.+.|++++|++.|++.++ +.| +...|..+..+|.+.|++++|++.+++..+. ..++ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 344455556666666666666666554 344 3455666666666666666666666655431 1111 2366
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
..+..++...|+++.|+..++++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 66777778888888888888888887774
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0017 Score=66.01 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCccCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---chHHHHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLINQMPDNLKATA---SAWGALLSACRSYGNTELGAGATSRILELEAQN---SAGYLLASSM 1324 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~---~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~---~~~yvlL~~l 1324 (1991)
..+...+.+.|++++|.+.++++....+.+. .+|..+..++...|+++.|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3456778899999999999999876433344 588889999999999999999999999999999 7889999999
Q ss_pred HHhCCCchhHHHHHHHHHH
Q 040435 1325 YAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1325 ya~~G~~~ea~~vr~~m~~ 1343 (1991)
|...|++++|........+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999987765443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00064 Score=67.12 Aligned_cols=90 Identities=12% Similarity=-0.013 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------chHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN------SAGYL 1319 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~------~~~yv 1319 (1991)
+...+..+...+.+.|++++|.+.+++..+..+.+..+|..+..++...|+++.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888999999999999998876556678899999999999999999999999999999998 77788
Q ss_pred HHHHHHHhCCCchhHH
Q 040435 1320 LASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1320 lL~~lya~~G~~~ea~ 1335 (1991)
.++.++...|+.+++.
T Consensus 83 ~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHhHhhhH
Confidence 8888888888777654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0012 Score=70.80 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccC------------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDN------------------LKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~------------------~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
.+......+.+.|++++|.+.+++.... .+.+..+|..+..++...|+++.|...+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555556665555555554331 1223578999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1311 EAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1311 ~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
+|+++.+|..++.+|...|++++|.......
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 9999999999999999999999999866543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.056 Score=65.17 Aligned_cols=192 Identities=8% Similarity=-0.000 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcC--CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC-HHHHHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG--AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGL-AHEALALV 1199 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G--~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~-~~eAl~lf 1199 (1991)
++.+..+...++... +.+..+|+.-.-.+.+.| .++++..+++.+.+ +|-.+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555555555543 345566666666666777 48899999998875 577888888888888888 68999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc----
Q 040435 1200 AEMKLGGLQPNAVTTLSVLSACSHG--------------GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARA---- 1260 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~T~~~LL~ac~~~--------------G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~---- 1260 (1991)
+++.+.. .-|...|+.....+.+. +.++++++++...+. +.| |...|+-+-.++.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 9999865 23555666555544443 458899999998876 567 566776666666655
Q ss_pred -------CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH-----HcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1261 -------GELDIAIDLINQMPDNLKATASAWGALLSACR-----SYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1261 -------G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~-----~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
+.++++++.++++.+. .||. .|.-+..+.. ..|..++....+.++.+++|...+.|.-|..-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~-~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL-EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH-CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh-Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 5689999999998873 4543 5654333322 35677889999999999999988877766443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0017 Score=61.44 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
...+..+...+.+.|++++|.+.+++.....+.+..+|..+..++...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788889999999999999998876445578899999999999999999999999999999999999999999887
Q ss_pred hCC
Q 040435 1327 AGG 1329 (1991)
Q Consensus 1327 ~~G 1329 (1991)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0023 Score=75.76 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHH
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALL 1288 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll 1288 (1991)
+...+..+...+...|++++|...|+..++ ..| +...|..+..+|.+.|++++|.+.++++.+..+.+...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456677788888899999999999998876 456 5788889999999999999999999998875566788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
.++...|++++|...++++++++|+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 99999999999999999999999877543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00091 Score=81.65 Aligned_cols=141 Identities=9% Similarity=-0.070 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDML 1257 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l 1257 (1991)
.|..+...|.+.|++++|+..|++... +.|+... +...|..+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 455555666666777777777776654 2344331 112222222222111 12455566666
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh-CCCchhHHH
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA-GGLWVESSG 1336 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~-~G~~~ea~~ 1336 (1991)
.+.|++++|.+.+++..+..+.+..+|..+..++...|+++.|+..++++++++|+++..+..|..+... .+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543344566666666666666666666666666666666666666666665333 333444433
Q ss_pred HH
Q 040435 1337 TR 1338 (1991)
Q Consensus 1337 vr 1338 (1991)
+.
T Consensus 321 ~~ 322 (338)
T 2if4_A 321 MY 322 (338)
T ss_dssp --
T ss_pred HH
Confidence 33
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0024 Score=66.86 Aligned_cols=56 Identities=11% Similarity=0.009 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------CchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQ------NSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~------~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
++..+...+...|+.+.|...+++++++.+. ....+..++.+|...|++++|....
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4445555555555555555555555544211 1334555666666666666666543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.002 Score=67.50 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CC---CCHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---LK---ATAS 1282 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~---pd~~ 1282 (1991)
++..+...+...|++++|.++++...+...-.++ ...+..+...+...|++++|.+.+++..+. .. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555554432111111 334555666666677777776666655321 10 1134
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
++..+...+...|+.+.|...+++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 566677777788888888888888776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00044 Score=69.94 Aligned_cols=82 Identities=13% Similarity=0.026 Sum_probs=69.3
Q ss_pred HcCCHHHHHHHHHHCccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1259 RAGELDIAIDLINQMPDNL---KATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~---~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
..|++++|+..+++..+.. +.+..+|..|...+...|++++|...++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688999999999987631 3456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 040435 1336 GTRLL 1340 (1991)
Q Consensus 1336 ~vr~~ 1340 (1991)
.....
T Consensus 82 ~~~~~ 86 (117)
T 3k9i_A 82 ELLLK 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0046 Score=79.03 Aligned_cols=125 Identities=12% Similarity=0.073 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC----CCC----CHHHHHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHG--VEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN----LKA----TASAWGA 1286 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~g--i~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~~p----d~~~~~~ 1286 (1991)
+...|++++|..++++.++... +-|+ ..+++.|..+|...|++++|..+++++.+. +.| -..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456677777766666554321 1121 356777777777788888877777765431 222 2557888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh-----cCCCCchHH---HHHHHHHHhCCCchhHHHHHHHHHHcC
Q 040435 1287 LLSACRSYGNTELGAGATSRILE-----LEAQNSAGY---LLASSMYAAGGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~~~~y---vlL~~lya~~G~~~ea~~vr~~m~~~g 1345 (1991)
|...|...|++++|+..++++++ ++|++|.+- .+|..++...|++++|+.+.+.+++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999998888877 578876554 567888999999999999888887654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0047 Score=77.21 Aligned_cols=186 Identities=5% Similarity=-0.059 Sum_probs=129.9
Q ss_pred HHHhcCCHHHHHHHHHhccC--C---C---------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K---N---------------IVSWSAMVAAYGMNGLAHEALALVAEMKLG-GLQPNAV 1212 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~---d---------------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~-Gi~Pd~~ 1212 (1991)
.+.+.|++++|.+.|..+.+ + + ..++..|...|...|++++|.+++.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556778888887776642 1 0 124677888999999999999998887542 1122222
Q ss_pred H---HHHHH-HHHHhcCCHHHHHHHHHHhHHh---cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----CCC
Q 040435 1213 T---TLSVL-SACSHGGLVEEGLSFFNSMVQD---HGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDN-----LKA 1279 (1991)
Q Consensus 1213 T---~~~LL-~ac~~~G~~e~A~~i~~~M~~~---~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~~p 1279 (1991)
+ ....+ ..+...|..++|.++++..... .+..+. ...+..|...|...|++++|.++++++... .++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 2 22222 2334568899999998877542 122232 467888999999999999999999876431 111
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---C----chHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1280 -TASAWGALLSACRSYGNTELGAGATSRILELEAQ---N----SAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1280 -d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~---~----~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
...++..++..|...|+++.|...+++++...+. . ...+..++.+|...|+|++|.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2558888899999999999999999999876432 2 2446677889999999999987544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00091 Score=81.63 Aligned_cols=109 Identities=8% Similarity=-0.046 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.+..+...+...|++++|...|+..++ +.|+... +...|+.+++...+. ..+|..+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 355566677789999999999998865 4454321 223344555544332 147888999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1293 SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
..|+++.|...++++++++|+++.+|..++.+|...|++++|......
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~ 289 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0041 Score=66.54 Aligned_cols=91 Identities=12% Similarity=-0.031 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--------H-----HHHHHHHHHHHHcCChhHHHHHHHHHHhc-----
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDNLKAT--------A-----SAWGALLSACRSYGNTELGAGATSRILEL----- 1310 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--------~-----~~~~~Ll~a~~~~g~~e~A~~~~e~llel----- 1310 (1991)
.+......+.+.|++++|.+.+++..+. .|+ . ..|..+..++...|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI-SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4556677888999999999999988762 232 3 39999999999999999999999999999
Q ss_pred --CCCCchHH----HHHHHHHHhCCCchhHHHHHHH
Q 040435 1311 --EAQNSAGY----LLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1311 --~P~~~~~y----vlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+|+++.+| ..++.++...|++++|....+.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 99999999 9999999999999999986553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.04 Score=68.68 Aligned_cols=209 Identities=7% Similarity=-0.044 Sum_probs=133.6
Q ss_pred HhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHH
Q 040435 1083 AGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIE 1162 (1991)
Q Consensus 1083 ~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e 1162 (1991)
..+.+.|++++|++.|.++.+..-...... ...+......... ...+..|...|.+.|+++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~-----------~~al~~l~~~y~~~~~~~ 72 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAA--------AGASVDDKRRNEQ-----------ETSILELGQLYVTMGAKD 72 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBS--------SSSSBCSHHHHHH-----------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhH--------HHHHHHHHHhhhH-----------HHHHHHHHHHHHHCCCHH
Confidence 456778888888888888876532221100 0000001100000 112456778888889999
Q ss_pred HHHHHHHhccC-----CCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHH
Q 040435 1163 ASRKAFDQISR-----KNI----VSWSAMVAAYGMNGLAHEALALVAEMKL----GGLQPN-AVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1163 ~A~~lf~~m~~-----~d~----~s~n~LI~ay~~~G~~~eAl~lf~eM~~----~Gi~Pd-~~T~~~LL~ac~~~G~~e 1228 (1991)
+|.+.+..+.+ ++. ...+.+-..+...|+.++|++++++... .+..+. ..++..+...+...|+++
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 73 KLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChH
Confidence 88888887653 111 1233333344456788899888887653 333333 346677788888999999
Q ss_pred HHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCCC----HHHHHHHHHHHHHcCCh
Q 040435 1229 EGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---LKAT----ASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~pd----~~~~~~Ll~a~~~~g~~ 1297 (1991)
+|..+++.+.....-..+ ...|..++.+|...|++++|..++++.... ...+ ...+..++..+...|++
T Consensus 153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 232 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDY 232 (434)
T ss_dssp HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhH
Confidence 999998887654222221 567888899999999999999998876431 2212 34556666667778899
Q ss_pred hHHHHHHHHHHhc
Q 040435 1298 ELGAGATSRILEL 1310 (1991)
Q Consensus 1298 e~A~~~~e~llel 1310 (1991)
+.|...+.++++.
T Consensus 233 ~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 233 KTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.015 Score=74.04 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=68.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN----------------IVSWSAMVAAYGMNGLAHEALALVAEMKLG 1205 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d----------------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~ 1205 (1991)
....+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355677888999999999999999998764 32 345555555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 040435 1206 GLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1206 Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
. +-+...+..+..++...|++++|+..|+.+++ +.|+ ...+..+..++.+.|+.++|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12344444455555555555555555555433 3442 334444444454445444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0066 Score=60.71 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=47.7
Q ss_pred HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040435 1230 GLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRIL 1308 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ll 1308 (1991)
|.+.|+..++ ..| +...+..+..+|.+.|++++|.+.+++.....+.+...|..|..++...|+.+.|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555543 344 345566666666666666666666666554334455566666666666666666666666666
Q ss_pred hcCCC
Q 040435 1309 ELEAQ 1313 (1991)
Q Consensus 1309 el~P~ 1313 (1991)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 66553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0036 Score=66.86 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGE----------LDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~----------~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
+.+.+++|.+.++..++ +.| +...|..+..++.+.|+ +++|+..+++..+..+.+..+|..|..+|
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 33445666666666554 345 45566666666666554 45788888877664445677888888888
Q ss_pred HHc-----------CChhHHHHHHHHHHhcCCCCchH
Q 040435 1292 RSY-----------GNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1292 ~~~-----------g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
... |++++|+..++++++++|++...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 776 48999999999999999998654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.015 Score=71.88 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~ 1224 (1991)
..+..+...|.+.|++++|...|++..+-... .......+++.+ ..| +...|..+..++.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--------~~~~~~~~~~~~---------~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------SRAAAEDADGAK---------LQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HHHHSCHHHHGG---------GHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--------CccccChHHHHH---------HHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999876540000 000000111100 111 223444555555556
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
|++++|++.+++.++ +.| +...|..+..+|.+.|++++|.+.++++.+..+.+..++..|...+...++.+++.
T Consensus 287 g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 287 SDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655543 344 34555555666666666666666666554433334555555555555555444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.014 Score=56.99 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1279 ATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1279 pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.+..+|..+...+...|+++.|+..++++++++|+++.+|..++.+|...|++++|....+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566677777777777777777777777777777777777777777777777777766544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.015 Score=57.99 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
+|++.|++..+.. +.+...+..+...+...|++++|...++..++ +.| +...|..+..+|.+.|++++|...+++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD---FDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3555555555432 22344555555566666666666666666554 233 345555666666666666666666655
Q ss_pred Cc
Q 040435 1273 MP 1274 (1991)
Q Consensus 1273 m~ 1274 (1991)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0044 Score=66.19 Aligned_cols=84 Identities=5% Similarity=-0.101 Sum_probs=72.3
Q ss_pred HHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1257 LARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT----------ELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~----------e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
..|.+++++|.+.++...+..+.+...|..+..++...+++ ++|+..++++++++|+++.+|..++++|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45678899999999998875567899999999998888765 59999999999999999999999999999
Q ss_pred hCC-----------CchhHHHHHHH
Q 040435 1327 AGG-----------LWVESSGTRLL 1340 (1991)
Q Consensus 1327 ~~G-----------~~~ea~~vr~~ 1340 (1991)
..| ++++|....+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHH
Confidence 875 78888876553
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0089 Score=58.66 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-------HH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-------LE 1248 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-------~~ 1248 (1991)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|++.++..++ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 3455556666666677777777766666532 22455556666666666777777766666654 4454 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
.+..+..++...|+.++|.+.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 44444555555555555554444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.067 Score=69.81 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC----------HHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHH
Q 040435 1190 GLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGL----------VEEGLSFFNSMVQDHGVEP-ALEHYSCMVDML 1257 (1991)
Q Consensus 1190 G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~----------~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l 1257 (1991)
...++|+++++++.+ +.|+.. .|+.--.++.+.|. ++++++.++.+++ ..| +...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 346789999999998 456554 45554455555566 9999999999987 456 567888888889
Q ss_pred HHcC--CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1258 ARAG--ELDIAIDLINQMPDNLKATASAWGALLSACRSYG-NTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1258 ~r~G--~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g-~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
.+.| ++++|.++++++.+..+.+..+|+.-.......| ..+++.+.++++++.+|.+.++|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999 7899999999998866778999999999999999 899999999999999999999999999998875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.035 Score=53.45 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=54.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATAS-AWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
....+.+.|++++|.+.++++.+..+.+.. .|..+..++...|+.+.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888999999988888764455677 888888889999999999999999999999988776
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.044 Score=53.13 Aligned_cols=69 Identities=19% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1278 KATASAWGALLSACRSYGN---TELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~---~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
++++..|..+..++...++ .++|...++++++++|+++.+..++++++...|++++|...+..+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888888888876655 68999999999999999999999999999999999999998887766543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.13 Score=65.77 Aligned_cols=97 Identities=9% Similarity=-0.110 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHh----cCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CCC
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQD----HGV-EPA-LEHYSCMVDMLARAGELDIAIDLINQMPDN-------LKA 1279 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~----~gi-~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~p 1279 (1991)
+++.|..+|...|++++|..++++.++- +|- .|+ ..+++.|..+|...|++++|+.++++..+. ..|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444555555555555555555544321 111 122 345566666666666666666666655321 122
Q ss_pred CHH-HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1280 TAS-AWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1280 d~~-~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
+.. +...|-.++...|.+++|+..+.++.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233333344456667777777766654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.027 Score=54.95 Aligned_cols=69 Identities=7% Similarity=0.029 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
+...+..+..+|.+.|++++|.+.++++.+..+.+..+|..|..++...|+.++|...+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 456777788888888888888888888766445567788888888888888888888888888876643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.95 E-value=0.24 Score=60.03 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=90.4
Q ss_pred CCHhHHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH----hcC-C---HHHHHHHHHHhHH
Q 040435 1174 KNIVSWSAMVAAYGM--NG---LAHEALALVAEMKLGGLQPNA-VTTLSVLSACS----HGG-L---VEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~--~G---~~~eAl~lf~eM~~~Gi~Pd~-~T~~~LL~ac~----~~G-~---~e~A~~i~~~M~~ 1239 (1991)
.+...|...+.+... .+ ...+|+.+|++..+ +.|+- ..+..+..++. ..+ . .....+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 356667776655432 22 24678888888877 45653 33333333332 110 1 1111111221111
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1240 DHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1240 ~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
......+...|..+.-++...|++++|...++++... .|+...|..+...+...|+.++|...+++++.++|..+ +|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 0112335778888777777779999999999988873 47877887778888889999999999999999999765 455
Q ss_pred HHHH
Q 040435 1320 LASS 1323 (1991)
Q Consensus 1320 lL~~ 1323 (1991)
+..+
T Consensus 348 ~~~~ 351 (372)
T 3ly7_A 348 WIEN 351 (372)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 4444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.1 Score=54.33 Aligned_cols=113 Identities=6% Similarity=-0.071 Sum_probs=85.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELD 1264 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~e 1264 (1991)
.++.++|+++|++..+.| .|+.. |-..|...+.+++|.++|++..+. -+...+..|..+|.+ .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346788899999888877 44444 555566677788888888887652 356777788888887 78888
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCC
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRS----YGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P 1312 (1991)
+|.+++++..+. -++..+..|...|.. .+|.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 898888888753 466778888888887 7888888888888887743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.14 Score=64.27 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccC----C---CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCC
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDN----L---KA-TASAWGALLSACRSYGNTELGAGATSRILE-----LEAQN 1314 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~---~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~ 1314 (1991)
.+++.|..+|...|++++|+.+++++.+. . .| -..+++.|...|...|++++|+..++++++ ++|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555555555555555555555544320 1 12 244677777777777777777777777766 56777
Q ss_pred chHHH
Q 040435 1315 SAGYL 1319 (1991)
Q Consensus 1315 ~~~yv 1319 (1991)
|.+-.
T Consensus 421 p~~~~ 425 (433)
T 3qww_A 421 PYISE 425 (433)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.21 Score=62.63 Aligned_cols=74 Identities=11% Similarity=-0.028 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccC----CC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCC
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDN----LK---A-TASAWGALLSACRSYGNTELGAGATSRILE-----LEAQN 1314 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~~---p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~ 1314 (1991)
.+++.|..+|...|++++|+.+++++... .. | -..+++.|...|...|++++|+..++++++ ++|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555555555555555555544320 11 1 245667777777777777777777777766 57887
Q ss_pred chHHHHH
Q 040435 1315 SAGYLLA 1321 (1991)
Q Consensus 1315 ~~~yvlL 1321 (1991)
|.+-.++
T Consensus 410 p~~~~~~ 416 (429)
T 3qwp_A 410 SLIEDLI 416 (429)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 7655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.99 Score=61.05 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=58.2
Q ss_pred HHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHH
Q 040435 1054 YSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAH 1133 (1991)
Q Consensus 1054 y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~ 1133 (1991)
...+|+++.|.++.+.+. +...|..|...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 455677777777766553 446777777788888888888887777643 223333344455555444444
Q ss_pred HHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040435 1134 GIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQ 1170 (1991)
Q Consensus 1134 ~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~ 1170 (1991)
..+...|. ++.-...|.++|++++|.+++.+
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443331 23334445566666666665543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.23 Score=46.25 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
+..+...+...|++++|...++..++. .| +...+..+..+|.+.|++++|.+.+++..+..+.+..++..+..++.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 334444444555555555555554432 22 24445555555555555555555555544322334444444444433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.31 Score=59.04 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHH----HcC-------CHHHHHHH
Q 040435 1207 LQPNAVTTLSVLSACS--HGG---LVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLA----RAG-------ELDIAIDL 1269 (1991)
Q Consensus 1207 i~Pd~~T~~~LL~ac~--~~G---~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~----r~G-------~~eeA~~l 1269 (1991)
.+.+...|...+.+.. ..+ ...+|..+|++.++ ++|+ ...|..+..+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777776654 333 35789999999987 6887 344443333332 111 11223332
Q ss_pred HHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1270 INQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1270 ~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
...+. ..+.++.+|.++.-.+...|+.+.|...++++++++|. ...|++++.++...|++++|.....
T Consensus 267 ~~a~~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 267 IVTLP-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHTCG-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcc-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22222 24668889999988888889999999999999999974 6788999999999999999997654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.43 E-value=1.2 Score=60.23 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=56.0
Q ss_pred HHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFF 1234 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~ 1234 (1991)
+..+|++++|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 34556777777666555 2446677777777777777777777776642 233333344455555544443
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1235 NSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1235 ~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
+.... .| .+..-..+|.+.|++++|.+++.++.
T Consensus 731 ~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 33321 11 12333344555666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=93.35 E-value=0.54 Score=48.76 Aligned_cols=79 Identities=5% Similarity=-0.162 Sum_probs=36.8
Q ss_pred hcCCHHHHHHHHHhccC-CCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 040435 1157 KCGAIEASRKAFDQISR-KNIVSWSAMVAAYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH----GGLV 1227 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~----~G~~ 1227 (1991)
..+.+++|.+.|++..+ .+...+..|-..|.. .++.++|+++|++..+.| +...+..|-..|.. .++.
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 113 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 113 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCH
Confidence 33334444444443332 234444444444444 445555555555555443 33344444444444 4555
Q ss_pred HHHHHHHHHhH
Q 040435 1228 EEGLSFFNSMV 1238 (1991)
Q Consensus 1228 e~A~~i~~~M~ 1238 (1991)
++|.++|+...
T Consensus 114 ~~A~~~~~~Aa 124 (138)
T 1klx_A 114 KQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.079 Score=50.88 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=46.9
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALE-HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~-~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
.+...|++++|.+.++..++ ..| +.. .+..+..+|.+.|++++|.+.+++..+..+.+..+|.. +.+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 44556666666666666654 234 344 56666666666666666666666665432223333311 344
Q ss_pred hHHHHHHHHHHhcCCCCc
Q 040435 1298 ELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~ 1315 (1991)
.++...++++.+.+|+++
T Consensus 78 ~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 78 MDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHhccCcccc
Confidence 555556666666665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.32 Score=61.01 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=63.5
Q ss_pred HHHcCCHHHHHHHHHHCccC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCc---hHHHH
Q 040435 1257 LARAGELDIAIDLINQMPDN----LKAT----ASAWGALLSACRSYGNTELGAGATSRILE-----LEAQNS---AGYLL 1320 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~~---~~yvl 1320 (1991)
+.+.|++++|++++++..+. +.|+ ..+++.|..+|...|++++|+..++++++ +.|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44566677777666655331 2222 46889999999999999999999999987 456665 45778
Q ss_pred HHHHHHhCCCchhHHHHHH
Q 040435 1321 ASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1321 L~~lya~~G~~~ea~~vr~ 1339 (1991)
|+.+|...|++++|..+.+
T Consensus 377 La~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 8999999999999998654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.28 Score=48.23 Aligned_cols=76 Identities=13% Similarity=0.014 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDN-------LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
+..-+..|...+.+.|+++.|...++.+.+. ..+...++..|..++.+.|+.+.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445566777788888888888888776442 123567899999999999999999999999999999997765
Q ss_pred HHH
Q 040435 1319 LLA 1321 (1991)
Q Consensus 1319 vlL 1321 (1991)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.24 Score=62.20 Aligned_cols=59 Identities=8% Similarity=-0.005 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCc---hHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1281 ASAWGALLSACRSYGNTELGAGATSRILE-----LEAQNS---AGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1281 ~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~~---~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..+++.|..+|...|++++|+..++++++ +.|++| ..+..|+.+|..+|++++|..+..
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 46889999999999999999999999987 466665 457788999999999999998654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.08 E-value=0.77 Score=44.26 Aligned_cols=72 Identities=10% Similarity=-0.076 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1245 PALEHYSCMVDMLARAGE---LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1245 P~~~~y~~Li~~l~r~G~---~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.+...+..+..++...++ .++|..++++.....+.++..+..|...+...|+++.|...++++++.+|.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 356777778887766554 688999998887755667888888888899999999999999999999988433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.98 E-value=1 Score=47.55 Aligned_cols=91 Identities=15% Similarity=0.003 Sum_probs=61.2
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHCccCCCC--CHHHHHHHHHHHHHcCChhHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAG---ELDIAIDLINQMPDNLKA--TASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G---~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
..+.+.|.+..+. | .++..+...+..+|.+.+ +++++..++++..+...| ....+..|.-+|.+.|+++.|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444331 1 245666666666677766 555777777666543223 35677788888999999999999
Q ss_pred HHHHHHhcCCCCchHHHH
Q 040435 1303 ATSRILELEAQNSAGYLL 1320 (1991)
Q Consensus 1303 ~~e~llel~P~~~~~yvl 1320 (1991)
.++++++++|++..+..+
T Consensus 93 y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 999999999988664443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=88.75 E-value=12 Score=38.35 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCc
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVK 1347 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~ 1347 (1991)
...-.+.....+|..++-.+++..++.-++-+|...+-++++|.+.|...++..+++.--++|++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33444455555666666666665554444445565666666666666666666666655556654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=87.81 E-value=1.4 Score=51.44 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHCccCCCC--CHHHHHHHHHHHHH-cC
Q 040435 1227 VEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLARA-----GELDIAIDLINQMPDNLKA--TASAWGALLSACRS-YG 1295 (1991)
Q Consensus 1227 ~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r~-----G~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~a~~~-~g 1295 (1991)
+.+|...+++.++ +.|+ ...|..|...|.+. |+.++|.+.|++..+ +.| +..++..+...++. .|
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~-LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR-YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH-HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHhcC
Confidence 4455555555544 5666 34666666666664 666666666666655 233 25555555665555 36
Q ss_pred ChhHHHHHHHHHHhcCCC
Q 040435 1296 NTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~ 1313 (1991)
+.+.+.+.+++++...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 666666666666666665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.77 E-value=17 Score=39.16 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=66.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHH
Q 040435 1052 DGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKW 1131 (1991)
Q Consensus 1052 ~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~ 1131 (1991)
+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..++--|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788889888888776 3567899999999999999999888887653 3334334455566555444
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040435 1132 AHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR 1173 (1991)
Q Consensus 1132 i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~ 1173 (1991)
+-......|- ++.-...+.-.|+++++.++|.+..+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4444443331 23333344455666666666655543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.99 E-value=15 Score=39.60 Aligned_cols=129 Identities=10% Similarity=0.089 Sum_probs=82.1
Q ss_pred HHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHH
Q 040435 951 DMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKS 1030 (1991)
Q Consensus 951 ~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~ 1030 (1991)
+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..++--|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455788888888887766 4677899999999999999999999988753 3444444555666666555
Q ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHH
Q 040435 1031 VHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEM 1101 (1991)
Q Consensus 1031 i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M 1101 (1991)
+-......| -+|.....+.-.|+++++.++|.+..+.+... ......|..+.|.++..++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~-----~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY-----AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH-----HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH-----HHHHHcCcHHHHHHHHHHh
Confidence 544444444 23444555667788888888877665422111 1111245556666666554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=83.22 E-value=1.2e+02 Score=39.35 Aligned_cols=251 Identities=8% Similarity=0.006 Sum_probs=121.1
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChH
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELS 1127 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le 1127 (1991)
+.-+..+++.+++.....++.. ...+...-.....+....|+..+|....+++-..|- ........++..+...|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC
Confidence 3344555666666666665554 222333333344555566776666666666655442 12223444555555444332
Q ss_pred HH--HHHHHHHHHhc-----------cccc-hhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHh---HHHHHHHHHHHcC
Q 040435 1128 SS--KWAHGIAIRRC-----------LAEE-VAVGTAVVDMYAKCGAIEASRKAFDQISRKNIV---SWSAMVAAYGMNG 1190 (1991)
Q Consensus 1128 ~a--~~i~~~~~k~g-----------~~~d-~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~---s~n~LI~ay~~~G 1190 (1991)
.. .+=...+...| +.++ .....+++..+.+-..+ ....... .++.. .+..-+.-+++.
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar~- 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVARQ- 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHhc-
Confidence 21 11111111111 1111 11223333333222222 1221111 11111 111122233333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040435 1191 LAHEALALVAEMKLGGLQPNAVTTLSVLSAC----SHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1191 ~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac----~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA 1266 (1991)
+.+.|..+|......+ ..+......+-... ...+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 6788999998886543 23433333232222 333434566666665533 223333333344445578999999
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
...|+.|+...........=+..+....|+.+.|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999763212233233345567788999999999988875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=82.62 E-value=8.3 Score=39.20 Aligned_cols=93 Identities=16% Similarity=-0.024 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHCccCCCC--CHHHHHHHHHHHHHcCChhHHH
Q 040435 1227 VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDI---AIDLINQMPDNLKA--TASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1227 ~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~ee---A~~l~~~m~~~~~p--d~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
+..+.+-|...... |. |+..+--.+..+|.+..+..+ ++.++++......| .......|.-++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444445444332 22 566666666777777776555 77777776553223 3345666777899999999999
Q ss_pred HHHHHHHhcCCCCchHHHHH
Q 040435 1302 GATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1302 ~~~e~llel~P~~~~~yvlL 1321 (1991)
+..+.+++.+|++.-+..+.
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHH
Confidence 99999999999987655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1991 | ||||
| d1ga8a_ | 282 | c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri | 2e-33 | |
| d1ll2a_ | 263 | c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun | 2e-08 |
| >d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Galactosyltransferase LgtC domain: Galactosyltransferase LgtC species: Neisseria meningitidis [TaxId: 487]
Score = 129 bits (324), Expect = 2e-33
Identities = 50/308 (16%), Positives = 100/308 (32%), Gaps = 63/308 (20%)
Query: 372 FSDN-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENID 430
DN V S A + + FH++ ++ I+ +++
Sbjct: 7 ADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN 65
Query: 431 SFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLP 490
+ N +++S+ + R L
Sbjct: 66 PEDFAG-----------------------------------FPLNIRHISITTYARLKLG 90
Query: 491 EVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAV-ETCKESFHRFDKYLNFSNPLI 549
E +K+L+LD D++V+ LTPLW DL GA + E + + + ++
Sbjct: 91 EYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGE- 149
Query: 550 SENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNL 609
+ G+ + +LK+WR+ +I + W + +D ++ + GL F
Sbjct: 150 --------YYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGG 199
Query: 610 TYPLDRSWHVLGLGYDPALNLTQ--------------IDNGAVVHYNGNNKPWLDLAVSK 655
+ ++ + Y N + AV HY G KPW +
Sbjct: 200 VCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAW 259
Query: 656 YKPYWSKY 663
+++
Sbjct: 260 GAERFTEL 267
|
| >d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Glycogenin domain: Glycogenin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Score = 55.3 bits (132), Expect = 2e-08
Identities = 23/215 (10%), Positives = 52/215 (24%), Gaps = 28/215 (13%)
Query: 449 ARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVV 508
L+ + + L +G + + + + + K +F+D D +V
Sbjct: 49 KALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWS-LTQYSKCVFMDADTLV 107
Query: 509 QKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFD 568
++ L+ + + G+ ++
Sbjct: 108 LANIDDLFEREELSAAP---------------------------DPGWPDCFNSGVFVYQ 140
Query: 569 LKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPAL 628
+ + + T P + + +
Sbjct: 141 PSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPA 200
Query: 629 NLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKY 663
N VVH+ G KPW +K K S+
Sbjct: 201 FKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEG 235
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1991 | |||
| d1ga8a_ | 282 | Galactosyltransferase LgtC {Neisseria meningitidis | 100.0 | |
| d1ll2a_ | 263 | Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: | 99.79 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.75 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.14 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.13 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.5 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.5 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.49 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.32 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.3 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.28 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.24 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.08 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 97.99 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.85 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.77 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.71 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.63 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.5 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.3 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.89 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.71 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 96.53 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.19 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.1 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 95.83 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 95.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.73 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 95.58 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 95.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.16 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 94.96 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 94.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.72 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 94.35 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 87.63 | |
| d1o7qa_ | 287 | alpha-1,3-galactosyltransferase catalytic domain { | 86.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.16 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 82.72 | |
| d1lzia_ | 283 | Glycosyltransferase A catalytic domain {Human (Hom | 82.15 |
| >d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Galactosyltransferase LgtC domain: Galactosyltransferase LgtC species: Neisseria meningitidis [TaxId: 487]
Probab=100.00 E-value=2.1e-33 Score=334.41 Aligned_cols=254 Identities=18% Similarity=0.213 Sum_probs=191.7
Q ss_pred ceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHH
Q 040435 367 YHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLR 444 (1991)
Q Consensus 367 ~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~ 444 (1991)
+||++++|+ +.+++|+|.|+++|+++ .+++|||++++++....+. ++
T Consensus 1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~------------------------------l~ 49 (282)
T d1ga8a_ 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAA------------------------------VA 49 (282)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHH------------------------------HH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHH------------------------------HH
Confidence 699999995 66999999999998765 5799999999877665542 33
Q ss_pred HHhh-ccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCC
Q 040435 445 QLES-ARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGM 523 (1991)
Q Consensus 445 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~ 523 (1991)
++.. .......++... ..... . ....+++|.++|+||++|++||+++||||||+|+||++||++||+++++++
T Consensus 50 ~~~~~~~~~i~~~~~~~-~~~~~----~-~~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~ 123 (282)
T d1ga8a_ 50 ANLRGGGGNIRFIDVNP-EDFAG----F-PLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDN 123 (282)
T ss_dssp HTSGGGTTTEEEEECCG-GGGTT----S-CCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTC
T ss_pred HHHHHcCCeEEEEECCc-hHhcc----c-cccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccc
Confidence 3211 112222222111 11110 0 112357889999999999999999999999999999999999999999999
Q ss_pred eeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchh
Q 040435 524 VNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGL 603 (1991)
Q Consensus 524 ~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n 603 (1991)
.+|||.|+...... ......++...++||||||||+|+++||+.++++++.+|++.+... ..++|||++|
T Consensus 124 ~~aa~~d~~~~~~~--------~~~~~~~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~LN 193 (282)
T d1ga8a_ 124 WLGASIDLFVERQE--------GYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDV--MQYQDQDILN 193 (282)
T ss_dssp SEEEEECHHHHTST--------THHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTT--CSSTHHHHHH
T ss_pred eeeeehhhhhhhhh--------hhHHHhCCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccC--cccCchhHHH
Confidence 99999886443211 1111223555678999999999999999999999999998876544 5679999999
Q ss_pred hhhccccccccccccccccCCCccc--------------cccccCCceEeecccCCCccccccccccccccchhhhhh
Q 040435 604 ITFYNLTYPLDRSWHVLGLGYDPAL--------------NLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILW 667 (1991)
Q Consensus 604 ~~f~~~~~~L~~~wN~~~~~~~~~~--------------~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d 667 (1991)
++|.+++..||.+||++..++.... ......+++||||+|+.|||.......+...|++|.+--
T Consensus 194 ~~f~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~ 271 (282)
T d1ga8a_ 194 GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSL 271 (282)
T ss_dssp HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTC
T ss_pred HHhcCCEEeCCHHHeeccccccccccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhh
Confidence 9999999999999998742221110 113356789999999999999888888888899887653
|
| >d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Glycogenin domain: Glycogenin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.79 E-value=4.7e-20 Score=215.95 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=142.6
Q ss_pred eEEEEcc-c-chhhHHHHHHHhhhcCCCCcEEEEE-EcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHH
Q 040435 368 HYAIFSD-N-VLATSVVVNSTVAHAKEPEKHVFHI-VTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLR 444 (1991)
Q Consensus 368 hi~~~~D-n-~~~~~v~i~Sil~~~~~~~~~~Fhi-vtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~ 444 (1991)
.|.+.+| + +.++.|++.|+.+|++. +.++| ++++++....+ .|+
T Consensus 6 ~vt~~t~d~Yl~~a~vl~~SL~~~~~~---~~~vvl~~~~i~~~~~~------------------------------~L~ 52 (263)
T d1ll2a_ 6 FVTLTTNDAYAKGALVLGSSLKQHRTS---RRLAVLTTPQVSDTMRK------------------------------ALE 52 (263)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTTCC---SEEEEEECTTSCHHHHH------------------------------HHH
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHHCCC---CCEEEEECCCCCHHHHH------------------------------HHH
Confidence 4556666 4 66899999999998754 23343 46666544433 333
Q ss_pred HHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCe
Q 040435 445 QLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMV 524 (1991)
Q Consensus 445 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~ 524 (1991)
.. ......++........ .... ....++..+|+||++++ ++++|||||||+|+||++||++||+.+.
T Consensus 53 ~~---~~~~~~v~~i~~~~~~----~~~~-~~~~~~~~ty~Kl~i~~-l~~ydkvlYLDaD~lv~~~id~Lf~~~~---- 119 (263)
T d1ll2a_ 53 IV---FDEVITVDILDSGDSA----HLTL-MKRPELGVTLTKLHCWS-LTQYSKCVFMDADTLVLANIDDLFEREE---- 119 (263)
T ss_dssp HH---CSEEEECCTTSTTSTT----HHHH-HHCGGGHHHHHHGGGGG-CTTCSEEEEECTTEEECSCCGGGGGSCS----
T ss_pred Hh---CCcceeEEeecCcchh----hhhh-hccccchhhhHHHHHhh-hcccceEEEeCCCEEEecCHHHHhcCCc----
Confidence 33 2333333322221110 1111 12356779999999999 5679999999999999999999999873
Q ss_pred eEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhh
Q 040435 525 NGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLI 604 (1991)
Q Consensus 525 ~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~ 604 (1991)
++||.+.. ...|||||||++|+++||.+++.+.+.. . ..+..+||+++|.
T Consensus 120 ~~a~~~~~-----------------------~~~~~nsGv~l~~p~~~~~~~i~~~~~~----~---~~~~~~dq~~ln~ 169 (263)
T d1ll2a_ 120 LSAAPDPG-----------------------WPDCFNSGVFVYQPSVETYNQLLHVASE----Q---GSFDGGDQGLLNT 169 (263)
T ss_dssp SEEEECSS-----------------------STTSEEEEEEEECCCHHHHHHHHHHHHH----T---CCTTSSHHHHHHH
T ss_pred cceeccCC-----------------------CcccccCCcEEECccHHHHHHHHHHHHh----h---CCCChhhhhHHHH
Confidence 56665421 1348999999999999999988865532 1 1255688999998
Q ss_pred hhccccc-----cccccccccccCCCcc--ccccccCCceEeecccCCCccccccccccccccchhhhh
Q 040435 605 TFYNLTY-----PLDRSWHVLGLGYDPA--LNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVIL 666 (1991)
Q Consensus 605 ~f~~~~~-----~L~~~wN~~~~~~~~~--~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~ 666 (1991)
.|.+... .++..||+...+.... .......+++||||+|..|||......+.+..|++|.+.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iIHf~g~~KPW~~~~~~~~~~~~~~~~~~ 238 (263)
T d1ll2a_ 170 FFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGHDP 238 (263)
T ss_dssp HTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC------
T ss_pred HHHhhhccCcccccCHHHhhhhhhhhhhhHhHHhhcCCeEEEEeCCCCCCCCCCCCCCccccccchhhc
Confidence 8877544 4556666542111110 011234688999999999999877667766666666554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.9e-15 Score=183.12 Aligned_cols=377 Identities=11% Similarity=0.004 Sum_probs=260.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHH
Q 040435 915 LKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYS 991 (1991)
Q Consensus 915 L~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~ 991 (1991)
...+.+.|+++.|.+.+..+++.. +-+..++..+..+|.+.|++++|...|+...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 344566788888888888777654 23466777777778888888888888776543 25567777777788888888
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcC
Q 040435 992 EALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVK 1071 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~ 1071 (1991)
+|+..+......... +...............................
T Consensus 85 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 131 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------------------------
T ss_pred ccccccccccccccc-cccccccccccccccccccccccccccccccc--------------------------------
Confidence 888777777553221 11112122222222222222222222222211
Q ss_pred CCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHH
Q 040435 1072 KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAV 1151 (1991)
Q Consensus 1072 ~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naL 1151 (1991)
......+..........+....+...+.+..... .-+...+..+...+...+..+.|...+..+++.. +.+...+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 209 (388)
T d1w3ba_ 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINL 209 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 1222223333333444444444444444443321 1123334444444555555566655555555433 2244566777
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
...|...|++++|...|+.... .+...|..+...|.+.|++++|+..|++..+.. +-+..++..+..++...|+.+
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHH
T ss_pred hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 8888889999999999987654 466788889999999999999999999998743 234667888889999999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRIL 1308 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ll 1308 (1991)
+|.+.++..... ...+...+..+..++.+.|++++|.+.+++..+..+.+..+|..|..++...|+.++|...+++++
T Consensus 289 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988764 344678889999999999999999999999887556678899999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHhCCC
Q 040435 1309 ELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1309 el~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+++|+++.+|..|+++|.+.|+
T Consensus 367 ~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 367 RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999998874
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.8e-14 Score=172.67 Aligned_cols=349 Identities=13% Similarity=0.067 Sum_probs=258.6
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHH
Q 040435 984 LVVNEKYSEALSLLYSMGKGVNEVD-EITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVEL 1062 (1991)
Q Consensus 984 ~~~~g~~~eAl~lf~~M~~~Gi~Pd-~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~ 1062 (1991)
+.+.|++++|+..|+++.+. .|+ ...+..+-..+...|++++|...+..+++.. +.+..++..+..+|.+.|++++
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccc
Confidence 44445555555555555432 232 3334444444555555555555555555543 2345667778888888899999
Q ss_pred HHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh
Q 040435 1063 AWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR 1139 (1991)
Q Consensus 1063 A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~ 1139 (1991)
|...+....+ .+...+..........+....+................ ............+....+..........
T Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC-VRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH-HHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccchhhhhHHHHHHhhcc
Confidence 9888887764 33344444455555556666666666555554333333 3333444455556666666666555554
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040435 1140 CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLS 1216 (1991)
Q Consensus 1140 g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~ 1216 (1991)
. +.+...+..+...+...|+.++|...+++..+ .+...|..+...|...|++++|+..++++...+ ..+...+..
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 242 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHH
Confidence 3 33456777888999999999999999997754 356789999999999999999999999998754 446677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG 1295 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g 1295 (1991)
+..++...|++++|.+.|+++++ +.|+ ...+..+..+|.+.|++++|.+.++......+.+...+..+...+...|
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCC
Confidence 88899999999999999999876 5674 7889999999999999999999999887766778899999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1296 NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
++++|+..++++++++|+++.++..++.+|...|++++|....+..
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 365 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.2e-09 Score=127.02 Aligned_cols=274 Identities=11% Similarity=0.014 Sum_probs=174.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccCh
Q 040435 1051 IDGYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATEL 1126 (1991)
Q Consensus 1051 I~~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~l 1126 (1991)
...|.+.|++++|...|+++.+ | +..+|..+...|...|++++|+..|.+..+. .|+ ...+..+...+...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccccccccc
Confidence 3445667777777777766543 2 3456666666777777777777777666543 232 23333344444444444
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG 1206 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G 1206 (1991)
+.|...+..+.+....... ......... ...+.......+..+...+...+|.+.|.+..+..
T Consensus 104 ~~A~~~~~~~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAH-LVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGG-GCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHhccchHH-HHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 4444444444332211000 000000000 00011111122233445567788999988877532
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHH
Q 040435 1207 -LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAW 1284 (1991)
Q Consensus 1207 -i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~ 1284 (1991)
-.++...+..+...+...|++++|...++..+. ..| +...|..+...|.+.|++++|.+.++++.+..+.+..+|
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 234567788888889999999999999999876 455 477899999999999999999999999876445578899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH-----------HHHHHHHHhCCCchhHHHHH-----HHHHHcCC
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQNSAGY-----------LLASSMYAAGGLWVESSGTR-----LLAKERGV 1346 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y-----------vlL~~lya~~G~~~ea~~vr-----~~m~~~gi 1346 (1991)
..|..+|...|++++|...++++++++|++...+ ..+..++...|+++.+.... ..++..|+
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~l~~l~~~~~~ 321 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL 321 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCHHHHHHHhCC
Confidence 9999999999999999999999999999876543 44677888888887665432 34555554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.1e-09 Score=129.66 Aligned_cols=221 Identities=15% Similarity=0.067 Sum_probs=154.9
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcC
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG 1159 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G 1159 (1991)
....+.+.|++++|+..|++..+. .|+ ..++.. +...|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~-----------------------------------lg~~~~~~~ 67 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQY-----------------------------------LGTTQAENE 67 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHH-----------------------------------HHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH-----------------------------------HHHHHHHcC
Confidence 345567778888888888777764 343 333433 444445555
Q ss_pred CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHH
Q 040435 1160 AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV----------------TTLSVLSA 1220 (1991)
Q Consensus 1160 ~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~----------------T~~~LL~a 1220 (1991)
++++|...|++..+ .+...|..+...|...|++++|++.++++... .|+.. .....+..
T Consensus 68 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (323)
T d1fcha_ 68 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGS 145 (323)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHH
T ss_pred ChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHH
Confidence 55555555554432 23445555555556666666666666555542 12110 11112223
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+...+...+|.+.+...++...-.++...+..+..++.+.|++++|.+.+++.....+.+..+|..+...+...|+.++|
T Consensus 146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 225 (323)
T d1fcha_ 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 225 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhH
Confidence 34556678888998888764333345778889999999999999999999998765566789999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
...++++++++|+++.++..++.+|...|++++|......
T Consensus 226 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 265 (323)
T d1fcha_ 226 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 265 (323)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999876553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=8.9e-07 Score=104.49 Aligned_cols=185 Identities=11% Similarity=0.059 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGL-AHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~-~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
+++.+...|.+.+..++|+.+++++.+ | +...|+....++...|+ +++|+..+++..+.. +-+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHHH
Confidence 344455556666777777777776653 3 44566666666666553 677777777766532 223556666666666
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC-----
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN----- 1296 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~----- 1296 (1991)
+.|++++|+++++.+++ +.| +...|..+..++.+.|++++|.+.++++.+..+.+...|..+...+...+.
T Consensus 124 ~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 124 WLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred hhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 77777777777777665 455 356677777777777777777777777665444466667666655555443
Q ss_pred -hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1297 -TELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1297 -~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
.+.|...++++++++|++..++..++.++...|. +++..
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~-~~~~~ 240 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL-SKYPN 240 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG-GGCHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcCh-HHHHH
Confidence 4566667777777777777777777776665553 34343
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.50 E-value=4.2e-06 Score=98.08 Aligned_cols=189 Identities=9% Similarity=0.020 Sum_probs=150.3
Q ss_pred cChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C-HhHHHHHHHHHHHcCCHHHHHHHH
Q 040435 1124 TELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-N-IVSWSAMVAAYGMNGLAHEALALV 1199 (1991)
Q Consensus 1124 g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d-~~s~n~LI~ay~~~G~~~eAl~lf 1199 (1991)
+..+.+..++..+++...+.+..++...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|..++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34567788888888766666777888889999999999999999998764 2 3 347999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC--
Q 040435 1200 AEMKLGGLQPNAVTTLSVLS-ACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN-- 1276 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~T~~~LL~-ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-- 1276 (1991)
+++.+.+.. +...|..... -+...|+.+.|..+|+.+++. ...+...|...++.+.+.|+++.|..+|++....
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 999876532 3333333332 234568999999999999875 2335778999999999999999999999997553
Q ss_pred CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1277 LKA--TASAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1277 ~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
..| ....|...+.--..+|+.+.+..+.+++.++-|+..
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 222 356899999988999999999999999999888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=1.2e-05 Score=93.86 Aligned_cols=258 Identities=12% Similarity=0.007 Sum_probs=148.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--Cc------hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHh
Q 040435 1051 IDGYSKCHLVELAWKLFNDVKK--PD------VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQE-KPNAITIINLLEACS 1121 (1991)
Q Consensus 1051 I~~y~k~G~l~~A~~lf~~m~~--~d------~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv-~Pd~~T~~~lL~a~a 1121 (1991)
...+...|++++|..++++..+ |+ ...++.+...|...|++++|+..|++..+..- .++..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------- 88 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---------- 88 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH----------
Confidence 3455667777777777765432 22 23455566666667777777777666543210 01110
Q ss_pred hccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHHcC
Q 040435 1122 VATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-------K----NIVSWSAMVAAYGMNG 1190 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-------~----d~~s~n~LI~ay~~~G 1190 (1991)
.....+..+...|...|++..|...+..... + ....+..+...+...|
T Consensus 89 ---------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 89 ---------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 0112233344455566666666666554321 1 1124445556677777
Q ss_pred CHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcC
Q 040435 1191 LAHEALALVAEMKLGG----LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1191 ~~~eAl~lf~eM~~~G----i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G 1261 (1991)
+.+.|...+.+..... ......++......+...|...++...+........-... ...+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 7777777777765432 1122334445555566677777777776655443222211 233455566677778
Q ss_pred CHHHHHHHHHHCccCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh------cCCCCchHHHHHHHHHHhCCCc
Q 040435 1262 ELDIAIDLINQMPDNL----KATASAWGALLSACRSYGNTELGAGATSRILE------LEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~~----~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle------l~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
+.++|...+++..... ......+..+..++...|+.+.|...++++++ ..|.....+..++.+|...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 8888888877765421 11244566677777778888888888777764 3344556677778888888888
Q ss_pred hhHHHHHH
Q 040435 1332 VESSGTRL 1339 (1991)
Q Consensus 1332 ~ea~~vr~ 1339 (1991)
++|.+..+
T Consensus 308 ~~A~~~l~ 315 (366)
T d1hz4a_ 308 SDAQRVLL 315 (366)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=9.7e-06 Score=94.69 Aligned_cols=288 Identities=7% Similarity=-0.052 Sum_probs=183.7
Q ss_pred HHhccCChhhHHHHHHHHHHhcCCCc----hhhhhhHHHHHHhcCCHHHHHHHHHhcCC-----Cc----hhhhhHHHHh
Q 040435 1018 ICKCFVHPMECKSVHCVILRRAFESN----ELVLNSLIDGYSKCHLVELAWKLFNDVKK-----PD----VVLWSTMIAG 1084 (1991)
Q Consensus 1018 a~~~~g~~~~a~~i~~~~~~~g~~~d----~~v~naLI~~y~k~G~l~~A~~lf~~m~~-----~d----~~syn~LI~~ 1084 (1991)
.+...|++++|.+++...++.....+ ...++.+...|...|++++|...|++..+ ++ ..++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 45678999999999999887643222 24677788899999999999999987653 11 2345556667
Q ss_pred hhhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC
Q 040435 1085 FTLCGRPREAIAVFQEMNQA----QEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA 1160 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~----Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~ 1160 (1991)
+...|++.+|...+.+.... +.... ......+..+...|...|+
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~~~la~~~~~~~~ 148 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQL--------------------------------PMHEFLVRIRAQLLWAWAR 148 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTS--------------------------------THHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchh--------------------------------hHHHHHHHHHHHHHHHhcc
Confidence 77788888888877765431 00000 0011233345556667777
Q ss_pred HHHHHHHHHhccC--------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHhcCC
Q 040435 1161 IEASRKAFDQISR--------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLG--GLQPNA----VTTLSVLSACSHGGL 1226 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~--------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~--Gi~Pd~----~T~~~LL~ac~~~G~ 1226 (1991)
++.|...+..... .....+..+...+...|...++...+.+.... ...... ..+..+...+...|+
T Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T d1hz4a_ 149 LDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 228 (366)
T ss_dssp HHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhccc
Confidence 7777777765542 12345555666677778888887777665431 111111 234445556678888
Q ss_pred HHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHCcc-----CCCC-CHHHHHHHHHHHHHcCChh
Q 040435 1227 VEEGLSFFNSMVQDHGVEP--ALEHYSCMVDMLARAGELDIAIDLINQMPD-----NLKA-TASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1227 ~e~A~~i~~~M~~~~gi~P--~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~-----~~~p-d~~~~~~Ll~a~~~~g~~e 1298 (1991)
.++|...+....+...-.+ ....+..+..++...|++++|.+.++++.. ...| ...+|..+...+...|+.+
T Consensus 229 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 229 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 8888888887643211111 134566678888888999988888887642 1222 2457777888888899999
Q ss_pred HHHHHHHHHHhcCCCC---------chHHHHHHHHHHhCCCchhHHHH
Q 040435 1299 LGAGATSRILELEAQN---------SAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~---------~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
+|...+++++++.+.. ......+...+...++.+++..-
T Consensus 309 ~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 309 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999888865432 11223344455667777777653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=2.6e-06 Score=100.42 Aligned_cols=158 Identities=7% Similarity=0.042 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGG-LVEEGLSFFNSMVQDHGVEP-ALEHYSCM 1253 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G-~~e~A~~i~~~M~~~~gi~P-~~~~y~~L 1253 (1991)
..|+-+-..+.+.++.++|+++++++++ +.|+.. .|+....++...| ++++|++.++..++ +.| +...|..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~---~~p~~~~a~~~~ 118 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE---EQPKNYQVWHHR 118 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH---HHHhhhhHHHHH
Confidence 4677777788899999999999999998 567655 5666666777766 59999999999877 567 47899999
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
..++.+.|++++|++.++++.+..+.+..+|..+...+...|+++.|...++++++++|.+..+|..++.++...|++.+
T Consensus 119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 99999999999999999999876667899999999999999999999999999999999999999999999999988766
Q ss_pred HHHHHH
Q 040435 1334 SSGTRL 1339 (1991)
Q Consensus 1334 a~~vr~ 1339 (1991)
.....+
T Consensus 199 ~~~~~~ 204 (315)
T d2h6fa1 199 RAVLER 204 (315)
T ss_dssp HHHHHH
T ss_pred hhhhHH
Confidence 554444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=5.7e-07 Score=106.82 Aligned_cols=261 Identities=10% Similarity=-0.059 Sum_probs=176.2
Q ss_pred cCCHHHHHHHHHhcCC--Cch-hhhhHHHH----------hhhhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhh
Q 040435 1057 CHLVELAWKLFNDVKK--PDV-VLWSTMIA----------GFTLCGRPREAIAVFQEMNQAQEKP-NAITIINLLEACSV 1122 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~--~d~-~syn~LI~----------~y~~~g~~eeAl~lf~~M~~~Gv~P-d~~T~~~lL~a~a~ 1122 (1991)
.+..++|.+++++..+ |+. ..|+..-. .+...|+.++|+.+++...+. .| +...+..+..++..
T Consensus 42 ~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHH
Confidence 3334666666666543 433 23433221 122344567788888777664 34 33344444444444
Q ss_pred cc--ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHH
Q 040435 1123 AT--ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALA 1197 (1991)
Q Consensus 1123 ~g--~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~ 1197 (1991)
.+ +.+.+...+..+.+.........+..+...+...|..++|...++.+.+ .+..+|+.+...+.+.|++++|..
T Consensus 120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 44 4667777777776654332222233444677778999999999998875 367889999999999999888766
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC
Q 040435 1198 LVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1198 lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
.+.+... +.|+. ..+...+...+..+++...+..... ..| +...+..+...+...|+.++|.+.+.+....
T Consensus 200 ~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 200 QGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLL---GRAEPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp CCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHH---SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHH---hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6655443 12222 2233344556667778888777755 334 4556667778888899999999999988765
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1277 LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1277 ~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
.+.+..+|..+..++...|+.++|...++++++++|.+...|..|+..+.-
T Consensus 272 ~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 272 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 455678899999999999999999999999999999998888888776653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=2e-06 Score=97.32 Aligned_cols=199 Identities=9% Similarity=-0.078 Sum_probs=122.7
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCC
Q 040435 1115 NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1115 ~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~ 1191 (1991)
.+-..+.+.|+++.|...+..+++.. +.+..+++.+..+|.+.|++++|...|+++.+ | +..+|..+...|...|+
T Consensus 42 ~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 120 (259)
T d1xnfa_ 42 ERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 120 (259)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence 33444555666666666666665543 23556777888888899999999999988764 3 45678888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc----CCHHHHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARA----GELDIAI 1267 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~----G~~eeA~ 1267 (1991)
+++|++.|++..+.. +.+......+..++...+..+....+...... ..+....+.. +..+... +..+.+.
T Consensus 121 ~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 195 (259)
T d1xnfa_ 121 DKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLMERLK 195 (259)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhH-HHHHHHHHHHHHHHHHHH
Confidence 999999999887743 22344433344444555555555555554432 2333223322 2222211 1222222
Q ss_pred HHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1268 DLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1268 ~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
..+.......+....+|..|...+...|+.+.|...++++++.+|++...|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 196 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222111101112357778888899999999999999999999998865543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.24 E-value=3.1e-05 Score=90.35 Aligned_cols=184 Identities=7% Similarity=-0.061 Sum_probs=145.9
Q ss_pred hcCCHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040435 1157 KCGAIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLS 1232 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~ 1232 (1991)
..+..++|..+|++..+ .+...|...+..+...|+.++|..+|+++++.........|...+..+.+.|.+++|++
T Consensus 76 ~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~ 155 (308)
T d2onda1 76 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHH
Confidence 33456788888887653 35678999999999999999999999999875433335578899999999999999999
Q ss_pred HHHHhHHhcCCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1233 FFNSMVQDHGVEP-ALEHYSCMVDMLAR-AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1233 i~~~M~~~~gi~P-~~~~y~~Li~~l~r-~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
+|+.+++ ..| +...|........+ .|+.+.|..+++.+....+.+...|..++......|+.+.|+.+++++++.
T Consensus 156 i~~~al~---~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 156 IFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHH---hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9999876 344 44555555544434 589999999999998766778899999999999999999999999999998
Q ss_pred CCCCch----HHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1311 EAQNSA----GYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1311 ~P~~~~----~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
.|.++. .+......-...|..+.+.++.+.+.+
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 876654 344445555677999999988776644
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=1e-05 Score=91.32 Aligned_cols=189 Identities=13% Similarity=-0.001 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSAC 1221 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac 1221 (1991)
.++..+...|.+.|++++|...|++..+ .+..+|+.+..+|.+.|++++|++.|+++.+. .| +..++..+..++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHH
Confidence 3555677889999999999999998764 47789999999999999999999999999984 45 455788888899
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH----HcCC
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR----SYGN 1296 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~----~~g~ 1296 (1991)
...|+.++|.+.|+..++ +.| +......+...+.+.+..+.+..+....... .+....+.. +..+. ..+.
T Consensus 116 ~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHHH-HHHHTTSSCHHHH
T ss_pred HHHhhHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-chhhhhhhH-HHHHHHHHHHHHH
Confidence 999999999999999876 355 4444444555566666666555555444331 222222221 11111 1223
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1297 TELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1297 ~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
.+.+...+.......|....+|..|+.+|...|++++|....+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 235 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444444445555567777788999999999999999999877644
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=2.3e-05 Score=77.62 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=91.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN 1296 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~ 1296 (1991)
...+...|++++|..+|+..++ +.| +...|..+..+|.+.|++++|++.++++.+..+.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 4567788999999999998876 466 577889999999999999999999998877556788899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1297 TELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1297 ~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
+++|+..++++++++|+++..+..+.++-+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999988888877654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.99 E-value=2.1e-06 Score=101.80 Aligned_cols=256 Identities=7% Similarity=-0.121 Sum_probs=177.4
Q ss_pred hhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHh-------hccChHHHHHHHHHHHHhccccchh
Q 040435 1078 WSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITI----INLLEACS-------VATELSSSKWAHGIAIRRCLAEEVA 1146 (1991)
Q Consensus 1078 yn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~----~~lL~a~a-------~~g~le~a~~i~~~~~k~g~~~d~~ 1146 (1991)
+..++......+..++|++++.+..+ ..|+..+. ..++.+.. ..+.++.+...+..+.+.. +.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 33444444444556899999999887 46876543 22333333 3344666777777776654 33455
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHhccC---CCHhHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1147 VGTAVVDMYAKCG--AIEASRKAFDQISR---KNIVSWSAMV-AAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1147 v~naLI~~y~k~G--~~e~A~~lf~~m~~---~d~~s~n~LI-~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
.+..+...+...+ +.++|...+.++.+ ++...|..++ ..+...|..++|+..++++.+.. +-+...|..+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~ 187 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 6666666666655 47888888887753 3556665444 56667888999999998887754 2356677777778
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+...|++++|...+....+ +.|. ...+...+...+..++|...+.......+++...+..+...+...|+.+.|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 8888888777666554433 2221 122334456667777787777766554455666777788888889999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
...+.++++.+|.+..++..++.+|...|+.++|........+
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987765433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.85 E-value=3e-05 Score=83.81 Aligned_cols=95 Identities=12% Similarity=0.008 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1245 PALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1245 P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
|+..........|.+.|++++|++.|+++.+..+.++.+|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 44444555566666666666666666665543445666666666666666666666666666666666666666666666
Q ss_pred HHhCCCchhHHHHHH
Q 040435 1325 YAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1325 ya~~G~~~ea~~vr~ 1339 (1991)
|...|++++|....+
T Consensus 82 ~~~l~~~~~A~~~~~ 96 (201)
T d2c2la1 82 QLEMESYDEAIANLQ 96 (201)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHH
Confidence 666666666665444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.77 E-value=3.7e-05 Score=83.01 Aligned_cols=110 Identities=10% Similarity=-0.009 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHH
Q 040435 1209 PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGAL 1287 (1991)
Q Consensus 1209 Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~L 1287 (1991)
|+...+......+...|++++|+..|+..++ +.| +...|..+..+|.+.|++++|+..++++.+..+-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 5666667777788888888888888888776 456 467788888888999999999999988876444567888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
..++...|+++.|...++++++++|++...+..+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~ 112 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 8899999999999999999998888765544333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00011 Score=76.67 Aligned_cols=116 Identities=7% Similarity=0.049 Sum_probs=97.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN 1296 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~ 1296 (1991)
...|.+.|++++|...|++.++ +.| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 4467789999999999999887 567 478899999999999999999999999987556678899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHH--hCCCchhHHH
Q 040435 1297 TELGAGATSRILELEAQNSAGYLLASSMYA--AGGLWVESSG 1336 (1991)
Q Consensus 1297 ~e~A~~~~e~llel~P~~~~~yvlL~~lya--~~G~~~ea~~ 1336 (1991)
+++|...++++++++|+++..+..+..+.. ..+.++++..
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998887765543 3444555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00045 Score=74.44 Aligned_cols=123 Identities=8% Similarity=-0.005 Sum_probs=64.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELD 1264 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~e 1264 (1991)
+...|++++|++.|.++ ..|+..++..+..++...|++++|.+.|++.++ +.|+ ...|..+..+|.+.|+++
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhccHH
Confidence 34444444444444432 133444444444444444444444444444443 3332 344444444455555555
Q ss_pred HHHHHHHHCccC---------------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1265 IAIDLINQMPDN---------------LKA-TASAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1265 eA~~l~~~m~~~---------------~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
+|.+.|++.... .+. ...++..+..++...|+++.|...+++++++.|+..
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~ 154 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence 554444443211 011 134566777778888888888888888888887643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=9.3e-05 Score=73.06 Aligned_cols=90 Identities=11% Similarity=0.046 Sum_probs=82.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCch
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWV 1332 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ 1332 (1991)
-...+.+.|++++|+.++++..+..+.+...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 46678899999999999999987667789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 040435 1333 ESSGTRLLAK 1342 (1991)
Q Consensus 1333 ea~~vr~~m~ 1342 (1991)
+|........
T Consensus 89 ~A~~~~~~a~ 98 (117)
T d1elwa_ 89 EAKRTYEEGL 98 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998766443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.63 E-value=5.2e-05 Score=74.37 Aligned_cols=88 Identities=10% Similarity=-0.081 Sum_probs=80.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCc
Q 040435 1252 CMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
.+...+.+.|++++|...+++.....+.++.+|..|..++...|+.+.|+..++++++++|+++.++..|+.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 45677889999999999999988755667999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHH
Q 040435 1332 VESSGTRL 1339 (1991)
Q Consensus 1332 ~ea~~vr~ 1339 (1991)
++|.+..+
T Consensus 101 ~~A~~~l~ 108 (112)
T d1hxia_ 101 NAALASLR 108 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.63 E-value=0.00038 Score=80.12 Aligned_cols=189 Identities=7% Similarity=-0.037 Sum_probs=124.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLG----GLQ-PNAVT 1213 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~----Gi~-Pd~~T 1213 (1991)
|.-....|..+|++++|...|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+. |-. ....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 34446678889999999999887653 12 357888899999999999999999876542 211 11334
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC-------H
Q 040435 1214 TLSVLSACS-HGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT-------A 1281 (1991)
Q Consensus 1214 ~~~LL~ac~-~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd-------~ 1281 (1991)
+..+...|. ..|++++|.+.++...+-+....+ ..+|..+...|.+.|++++|.+.++++....+.+ .
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 555666664 469999999999887653222222 3467888999999999999999999865421111 1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchH--H---HHHHHHHHh--CCCchhHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAG--Y---LLASSMYAA--GGLWVESSG 1336 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~--y---vlL~~lya~--~G~~~ea~~ 1336 (1991)
..+..++-.+...|+.+.|...++++.+++|..+.. + ..|..+|.. .+++++|.+
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 234455556677899999999999999998864432 2 333444444 244556544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=6.7e-05 Score=74.81 Aligned_cols=108 Identities=14% Similarity=-0.050 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCH---HHHHHHHHHCccCCCCC---HHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGEL---DIAIDLINQMPDNLKAT---ASAWGAL 1287 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~---eeA~~l~~~m~~~~~pd---~~~~~~L 1287 (1991)
..|++.+...+++++|.+.|+..+. +.| +..++..+..+|.+.++. ++|+++++++... .|+ ..+|..|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~L 78 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHH
Confidence 4577888889999999999999876 566 578888888888876554 5699999998753 232 2478899
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
..+|...|+++.|++.++++++++|++..+..++..+..
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999887777766543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00022 Score=75.25 Aligned_cols=136 Identities=12% Similarity=-0.013 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDML 1257 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l 1257 (1991)
.+......+.+.|++++|+..|.+.+..- |.. .+..+.-......+ ....|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~--------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQAL--------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchh--------HHHHHHHHHHHH
Confidence 44455566777777888877777766421 100 00000000111111 023577788899
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
.+.|++++|+..+++.....+.++.+|..+..++...|+++.|...++++++++|+++.....++.++...+...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887556689999999999999999999999999999999999999999999988777666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00027 Score=76.18 Aligned_cols=117 Identities=15% Similarity=0.024 Sum_probs=100.5
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
.+...|++++|++.|..+ ..|+...|..+..+|.+.|++++|++.|++..+..+.++..|..+..++...|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 456899999999999865 456788899999999999999999999999987556788999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc----------------hHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1300 GAGATSRILELEAQNS----------------AGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1300 A~~~~e~llel~P~~~----------------~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
|...++++++..|.+. ..+..++.+|...|+|++|.......
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998765542 44678899999999999988765543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.54 E-value=0.0013 Score=75.53 Aligned_cols=167 Identities=6% Similarity=-0.073 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHH-cCCHHHHHHHHHHHHH----CCCCCC-
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGM-NGLAHEALALVAEMKL----GGLQPN- 1210 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~-~G~~~eAl~lf~eM~~----~Gi~Pd- 1210 (1991)
.++..+..+|.+.|++++|...++...+ .+ ...+..+...|-. .|++++|++.|++..+ .+-.+.
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 3455566677777777777777765442 11 3455556666644 5889999888887653 221221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC--C---C
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIAIDLINQMPDNLK--A---T 1280 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~--p---d 1280 (1991)
..++..+...+...|++++|.++|+.+.....-.+. ...+..++..+...|+++.|.+.++++.+..+ + .
T Consensus 158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre 237 (290)
T d1qqea_ 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHH
Confidence 235677778888999999999999987663222211 12345556667788999999999998876311 1 1
Q ss_pred HHHHHHHHHHHHHc--CChhHHHHHHHHHHhcCC
Q 040435 1281 ASAWGALLSACRSY--GNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1281 ~~~~~~Ll~a~~~~--g~~e~A~~~~e~llel~P 1312 (1991)
......|+.++... +.+++|...|+++.+++|
T Consensus 238 ~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 23455666665542 246677777776666654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00021 Score=74.36 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCc
Q 040435 1252 CMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
.....|.+.|++++|+..|+++.+..+.+...|..+..++...|+++.|...++++++++|++..+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34567889999999999999998756678999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q 040435 1332 VESSGTRLLA 1341 (1991)
Q Consensus 1332 ~ea~~vr~~m 1341 (1991)
++|.......
T Consensus 95 ~eA~~~~~~a 104 (159)
T d1a17a_ 95 RAALRDYETV 104 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998866544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.30 E-value=0.0018 Score=67.80 Aligned_cols=131 Identities=8% Similarity=-0.054 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 040435 1180 SAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLA 1258 (1991)
Q Consensus 1180 n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~ 1258 (1991)
......+...|++++|++.|.++++. +..........+.. .+.| ....|..+..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHHHH
Confidence 33455667788888888888776531 11111111111110 1223 3456778889999
Q ss_pred HcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCch
Q 040435 1259 RAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWV 1332 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ 1332 (1991)
+.|++++|+..++++.+..+.++.+|..+..++...|+++.|...++++++++|+++..+..|..++.......
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~ 162 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 162 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987666788999999999999999999999999999999999998888888776544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.27 E-value=0.0016 Score=68.19 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
.|..+..+|.+.|++++|+..+++.....+.+..+|..+..++...|+++.|...++++++++|+++.....+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 56678888999999999999999988756778999999999999999999999999999999999999999998888777
Q ss_pred CCchhH
Q 040435 1329 GLWVES 1334 (1991)
Q Consensus 1329 G~~~ea 1334 (1991)
+...+.
T Consensus 146 ~~~~e~ 151 (168)
T d1kt1a1 146 KEHNER 151 (168)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 766553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.23 E-value=0.0018 Score=66.80 Aligned_cols=129 Identities=12% Similarity=-0.098 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDM 1256 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~ 1256 (1991)
..+......+.+.|++.+|+..|.+.+..- |.. ....-.........+ ....|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~~--------~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKNI--------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhhH--------HHHHHhhHHHH
Confidence 456667778888888888888888877521 100 000000000001111 12467788899
Q ss_pred HHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1257 LARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
|.+.|++++|++.++++.+..+.+..+|..+..++...|+++.|...++++++++|+++.....+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999887556688999999999999999999999999999999999988777766543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0011 Score=66.21 Aligned_cols=90 Identities=8% Similarity=0.024 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch-------HHHHHH
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA-------GYLLAS 1322 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~-------~yvlL~ 1322 (1991)
+-.+.+.+.+.|++++|++.|++..+..+.+..+|..+..+|...|+++.|...++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4456778889999999999999888755667899999999999999999999999999999998865 455667
Q ss_pred HHHHhCCCchhHHHHHH
Q 040435 1323 SMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1323 ~lya~~G~~~ea~~vr~ 1339 (1991)
.++...+++++|.....
T Consensus 87 ~~~~~~~~~~~A~~~~~ 103 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYN 103 (128)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHH
Confidence 78888899999887654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=96.72 E-value=0.0025 Score=61.76 Aligned_cols=85 Identities=15% Similarity=0.049 Sum_probs=47.8
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+.+.|++++|...|+..++ +.| +...|..+..++.+.|++++|+..+++..+..+.+..+|..|...+...|+.+
T Consensus 25 ~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcc---cccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHH
Confidence 34455556666665555554 344 24555555555666666666666665554433444556666666666666666
Q ss_pred HHHHHHHHH
Q 040435 1299 LGAGATSRI 1307 (1991)
Q Consensus 1299 ~A~~~~e~l 1307 (1991)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.71 E-value=0.00081 Score=68.84 Aligned_cols=107 Identities=14% Similarity=0.006 Sum_probs=64.5
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH----------cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLAR----------AGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r----------~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.+.+++|++.|+..++ +.| +...+..+..+|.+ .+++++|.+.++++.+..+.+..+|..+..++.
T Consensus 10 ~~~fe~A~~~~e~al~---~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHh---hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 3344555555555443 344 23444444444432 233456666666665533445666666666665
Q ss_pred HcC-----------ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1293 SYG-----------NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1293 ~~g-----------~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
..| +++.|...++++++++|++...+..|+......+.+.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 543 46889999999999999999888777776544444333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.54 E-value=0.0051 Score=65.00 Aligned_cols=119 Identities=8% Similarity=-0.035 Sum_probs=82.4
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
......|++++|.+.|...+.-+.-.+-... ...........-++.. ....|..+..++...|+.+
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~~------~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVED------KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCch
Confidence 4567788888888888887653221110000 0000111111111111 2367888999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHH-----HHcCCcccCc
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLA-----KERGVKVVAG 1351 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m-----~~~gi~k~~g 1351 (1991)
.|...++++++++|.+...|..|+.+|...|++++|......+ ++.|+.|.++
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 9999999999999999999999999999999999998866543 5567765443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.0043 Score=64.94 Aligned_cols=62 Identities=11% Similarity=-0.000 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
.+|..+..+|...|+++.|+..++++++++|+++.++..++.+|...|++++|....+...+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46777888899999999999999999999999999999999999999999999987775443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.0019 Score=63.82 Aligned_cols=92 Identities=5% Similarity=-0.158 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCC--chHHHHHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG---NTELGAGATSRILELEAQN--SAGYLLASSMY 1325 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g---~~e~A~~~~e~llel~P~~--~~~yvlL~~ly 1325 (1991)
..+++.+...+++++|++.|++.....+.++.++..+..++...+ +.++|+..++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457788889999999999999998766778899999999987644 5567999999999998765 34788999999
Q ss_pred HhCCCchhHHHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~m~ 1342 (1991)
...|++++|.+.....-
T Consensus 83 ~~~g~~~~A~~~~~~aL 99 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLL 99 (122)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 99999999998776544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.22 E-value=0.42 Score=52.34 Aligned_cols=221 Identities=10% Similarity=-0.025 Sum_probs=113.5
Q ss_pred hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 040435 1076 VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMY 1155 (1991)
Q Consensus 1076 ~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y 1155 (1991)
..+..|-..+.+.++.++|++.|++..+.| +...+.. |..+|
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~-----------------------------------Lg~~y 44 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFN-----------------------------------LGVLY 44 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHH-----------------------------------HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHH-----------------------------------HHHHH
Confidence 445556566666777777777777776654 2222222 22222
Q ss_pred Hh----cCCHHHHHHHHHhccCC-CHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 040435 1156 AK----CGAIEASRKAFDQISRK-NIVSWSAMVAAYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS---- 1222 (1991)
Q Consensus 1156 ~k----~G~~e~A~~lf~~m~~~-d~~s~n~LI~ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~---- 1222 (1991)
.. ..+...|...+....++ +...+..|...+.. .++.+.|+..+++..+.|.. .....+...+.
T Consensus 45 ~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 45 YQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKV 121 (265)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSS
T ss_pred HcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCc
Confidence 22 23444444444444332 23333333333332 34556666666666655421 11111111111
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH----c
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELDIAIDLINQMPDNLKATASAWGALLSACRS----Y 1294 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~ 1294 (1991)
.......+...+..... ..+...+..|...|.. ..+...+..+++...+ ..+..++..|...+.. .
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccc
Confidence 23345555555554432 2344555556666654 3455666666665543 2345555555555554 4
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh----CCCchhHHHHHHHHHHcC
Q 040435 1295 GNTELGAGATSRILELEAQNSAGYLLASSMYAA----GGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1295 g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~----~G~~~ea~~vr~~m~~~g 1345 (1991)
.+.+.|...++++.+.+ ++.++..|+.+|.. ..+.++|.+..+.--+.|
T Consensus 196 ~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 196 KNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 57777777777776663 46667777777765 235666666655443433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0045 Score=58.07 Aligned_cols=78 Identities=13% Similarity=0.008 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccC------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDN------LKA-TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~------~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
...+-.+...+.+.|++++|...+++..+. ..+ ...++..|..++...|++++|...++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 334456777788888888888888776431 112 2578999999999999999999999999999999998887
Q ss_pred HHHHH
Q 040435 1320 LASSM 1324 (1991)
Q Consensus 1320 lL~~l 1324 (1991)
.+..+
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.0011 Score=82.43 Aligned_cols=86 Identities=9% Similarity=-0.033 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
..+..+...+.+.|+.++|...++..... . ...++..|+..++..|+++.|+..++++++++|++...|..||.+|..
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY-I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp ----------------------CCHHHHH-H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC-C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34444555555555555555444333210 0 123444555555555555555555555555555555555555555555
Q ss_pred CCCchhHH
Q 040435 1328 GGLWVESS 1335 (1991)
Q Consensus 1328 ~G~~~ea~ 1335 (1991)
.|+..+|.
T Consensus 199 ~~~~~~A~ 206 (497)
T d1ya0a1 199 KGDHLTTI 206 (497)
T ss_dssp TTCHHHHH
T ss_pred cCCHHHHH
Confidence 55555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.15 E-value=0.44 Score=54.64 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=24.2
Q ss_pred hccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1122 VATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFD 1169 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~ 1169 (1991)
+.+++...+..+......| +..+.++|.+.|...++++.-++..+
T Consensus 260 k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 260 KVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 3344444444554444434 23466777777777776555444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.10 E-value=0.33 Score=55.67 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=66.7
Q ss_pred HHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 040435 747 LMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEG 826 (1991)
Q Consensus 747 Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a 826 (1991)
....+-+.|.++.|..++..+.. |.-++..|.+.+++..|.+++.+. -+..+|..+..+|........+
T Consensus 20 i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la 88 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 88 (336)
T ss_dssp ---------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH
Confidence 34445566677777777765443 555666666777777776666543 1345666666776665544332
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcC
Q 040435 827 LQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEM---CERDVISWSVMIGGYVQSA 886 (1991)
Q Consensus 827 ~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m---~~~d~~syn~LI~a~~~~G 886 (1991)
.+...+...+..-...++.+|-. |..+....+++.. ...+...++-++..|++.+
T Consensus 89 -----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 89 -----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp -----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 12222223333344556666666 6777777777654 2345666677777776653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.09 E-value=0.014 Score=59.74 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
.+|..+..++...|+++.|...++++++++|.+..+|..++.+|...|++++|.......
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a 127 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 127 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence 467788889999999999999999999999999999999999999999999999766543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.83 E-value=0.012 Score=61.26 Aligned_cols=63 Identities=8% Similarity=-0.024 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
....|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|........
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al 138 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 138 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence 456788888999999999999999999999999999999999999999999999998665443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=95.80 E-value=1.7 Score=47.00 Aligned_cols=224 Identities=9% Similarity=-0.088 Sum_probs=117.9
Q ss_pred hhhhhhHHHHHHhcCCHHHHHHHHHhcCC-CchhhhhHHHHhhhh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1044 ELVLNSLIDGYSKCHLVELAWKLFNDVKK-PDVVLWSTMIAGFTL----CGRPREAIAVFQEMNQAQEKPNAITIINLLE 1118 (1991)
Q Consensus 1044 ~~v~naLI~~y~k~G~l~~A~~lf~~m~~-~d~~syn~LI~~y~~----~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~ 1118 (1991)
+..+..|-..+-+.++.++|.+.|++..+ .+..++..|-..|.. ..+...|...+..-...+. | .....+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~-~--~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY-S--NGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc-c--chhhcccc
Confidence 44566677778889999999999998754 455555555555544 4456666666666555431 1 11111111
Q ss_pred HHh----hccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHH----cC
Q 040435 1119 ACS----VATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGM----NG 1190 (1991)
Q Consensus 1119 a~a----~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~----~G 1190 (1991)
.+. ...+.+.+...+....+.|.. .....+...+.. ..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~----------------------------------~a~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYA----------------------------------EGCASLGGIYHDGKVVTR 124 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCH----------------------------------HHHHHHHHHHHHCSSSCC
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhh----------------------------------hHHHhhcccccCCCcccc
Confidence 111 123344444444444443321 111111112211 22
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCC
Q 040435 1191 LAHEALALVAEMKLGGLQPNAVTTLSVLSACSH----GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGE 1262 (1991)
Q Consensus 1191 ~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~----~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~ 1262 (1991)
....|+..+.+.... .+...+..|...+.. ..+...+..+++...+. .+......|..+|.. ..+
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCC
T ss_pred hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccc
Confidence 344455555544432 233444444444432 33455555555554321 234444445555544 457
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCC
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRS----YGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~ 1313 (1991)
.++|..++++..+. -++..+..|...|.. ..|.+.|.+.++++.+++..
T Consensus 198 ~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 198 FKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 78888888777653 245666666666653 33788888888888777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.73 E-value=0.0039 Score=63.47 Aligned_cols=75 Identities=5% Similarity=-0.066 Sum_probs=64.9
Q ss_pred HHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1257 LARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY----------GNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~----------g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
|-|.+++++|.+.++...+..|.++.+|..+..++... +.+++|+..++++++++|+++.+|..++++|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 56788899999999999876677888999999888743 45678999999999999999999999999999
Q ss_pred hCCCc
Q 040435 1327 AGGLW 1331 (1991)
Q Consensus 1327 ~~G~~ 1331 (1991)
..|++
T Consensus 87 ~~g~~ 91 (145)
T d1zu2a1 87 SFAFL 91 (145)
T ss_dssp HHHHH
T ss_pred Hcccc
Confidence 87753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.046 Score=53.78 Aligned_cols=58 Identities=9% Similarity=-0.084 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1181 AMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1181 ~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
.+...|.+.|++++|+..|.+.++.+ +.+...+..+..+|...|++++|++.++.+++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34445555555555555555555432 22344455555555555555555555555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.009 Score=73.80 Aligned_cols=135 Identities=8% Similarity=-0.051 Sum_probs=85.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
.+.++.|+..+.+... +.| +...+..+...+...|+.++|...+..... +.| ...+..|.+++...|++++|.
T Consensus 99 ~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~~-~~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---YIC-QHCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp HHHHHHHHHHHTC---------------------------------CCHHHH---HHH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC---CCH-HHHHHHHHHHHHHcccHHHHH
Confidence 3455566655554432 334 344566666777788888888887776543 122 356788999999999999999
Q ss_pred HHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1268 DLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1268 ~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
..+++..+..+.+...|+.|...+...|+..+|...|.+++..+|..+.++..|+.+|.+..
T Consensus 173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 99999887556677899999999999999999999999999999999999999998887544
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=95.52 E-value=0.031 Score=57.93 Aligned_cols=96 Identities=5% Similarity=-0.042 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.|..+..++.+.|++++|+..++..++ +.| +...|..+..+|...|++++|.+.++++....+.+..++..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALG---LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhh---cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 355566677888888888888888876 456 4677888888888899999999998888764455666666655554
Q ss_pred HHcCC-hhHHHHHHHHHHhcC
Q 040435 1292 RSYGN-TELGAGATSRILELE 1311 (1991)
Q Consensus 1292 ~~~g~-~e~A~~~~e~llel~ 1311 (1991)
...+. .+...+.+.++++.-
T Consensus 143 ~~~~~~~e~~kk~~~~~f~~~ 163 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMFKKF 163 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhhh
Confidence 44332 234556666666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.16 E-value=0.019 Score=64.39 Aligned_cols=125 Identities=14% Similarity=0.009 Sum_probs=65.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 040435 1188 MNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA 1266 (1991)
+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+ +.|+ ...+..+..++...+..+++
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhccccHHH
Confidence 4566777777777766642 23455666666667777777777777776654 4554 33333344444333333333
Q ss_pred HHHHHHCccCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1267 IDLINQMPDNLKA-TASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1267 ~~l~~~m~~~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
..-.........| +...+......+...|+.+.|...++++.++.|..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 2221111110112 2223333344455667777777777777777776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=94.96 E-value=0.0098 Score=66.85 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=87.6
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
.+.|++++|++.+++.++ ..| +...+..+..+|++.|++++|.+.++...+..+.+...+..+...+...+..+.+
T Consensus 7 L~~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 367999999999999987 677 5899999999999999999999999998764344566666666665544443333
Q ss_pred HHHHHHH-HhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1301 AGATSRI-LELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1301 ~~~~e~l-lel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
.....+. +..+|.....+...+.++...|+.++|...+....+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2221111 1134545556667789999999999999988766544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.83 E-value=0.13 Score=53.65 Aligned_cols=73 Identities=14% Similarity=0.157 Sum_probs=56.6
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH----hcCCCCCHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ----DHGVEPALEH 1249 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~----~~gi~P~~~~ 1249 (1991)
+..+..+...+...|++++|+..++++.+.. +-+...|..++.++...|+.++|++.|+.+.+ +.|+.|...+
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4567778888888888888888888887743 34677888888888888888888888887633 4688887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.72 E-value=0.082 Score=53.72 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccC------CCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDN------LKAT-----ASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~------~~pd-----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
..|+.+..+|.+.|++++|.+.+++.... ..++ ..++..+..++...|+.++|...+++++++.|+..+
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 34556666667777777666666654320 1111 235677888899999999999999999988775433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=94.35 E-value=0.065 Score=54.55 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=65.5
Q ss_pred HHHHHHcCCHHHHHHHHHHCccC--CCC----------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------
Q 040435 1254 VDMLARAGELDIAIDLINQMPDN--LKA----------TASAWGALLSACRSYGNTELGAGATSRILELEAQN------- 1314 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~--~~p----------d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~------- 1314 (1991)
...+.+.|++++|++.+++..+. .-| ....|..+..++...|+++.|...+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44555667777777777766431 111 14688899999999999999999999999875431
Q ss_pred ----chHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1315 ----SAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1315 ----~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
..+|..++.+|...|++++|......
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~ 125 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKK 125 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 23578889999999999999986553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.92 Score=41.39 Aligned_cols=71 Identities=11% Similarity=0.055 Sum_probs=35.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCC----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGV----EPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGAL 1287 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi----~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~L 1287 (1991)
+...+.+.|++++|...|++.++...- .++ ..++..|..+|.+.|++++|.+.++++.+..|.+..+++.+
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 344455555555555555555432111 111 34555666666666666666666666555323334444443
|
| >d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: alpha-1,3-galactosyltransferase-like domain: alpha-1,3-galactosyltransferase catalytic domain species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.10 E-value=2.2 Score=46.53 Aligned_cols=155 Identities=9% Similarity=-0.065 Sum_probs=82.8
Q ss_pred cchhhhHHHHh------hcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccC
Q 040435 478 YLSMLNHLRFY------LPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISE 551 (1991)
Q Consensus 478 ~~s~~~y~Rl~------ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~ 551 (1991)
.|...++.|+- .-.++.++|-+.|+|+|++|.+.+.+= .| +..+|..+.+.-...+ ....+-.+|.-..
T Consensus 113 ~Wp~iTL~Rm~~i~~~i~~~~~~e~Dylf~~DaDm~f~~~vg~E---~L-~~lv~~lHp~~y~~~~-~~fpyErrp~S~A 187 (287)
T d1o7qa_ 113 RWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADP-NDFTYERRKESAA 187 (287)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCG-GGSCCCCCTTSTT
T ss_pred CCchhHHHHHHHHHHHHHHhhhccCCeEEEEeCCceEecccccc---cc-CCccceecccccCCCC-CCCCCcCCCCccc
Confidence 46667777765 334455699999999999999998641 23 3456665443222111 1112223333333
Q ss_pred CCCC--CCcccccceeEeehHHHHHhhHHHHHHHHHHh-chhccccccCCCCchhhhhcc--ccccccccccccccCCCc
Q 040435 552 NFSP--NACGWAFGMNMFDLKEWRKRNITGIYHYWQDA-NEDRTLWKLGTLPPGLITFYN--LTYPLDRSWHVLGLGYDP 626 (1991)
Q Consensus 552 ~~~~--~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~-~~~~~~~~~~dqd~~n~~f~~--~~~~L~~~wN~~~~~~~~ 626 (1991)
+++. ..-|+-.|+.==-....-+ +++.+...+.. .++...-.+.|-.-+|-.|.. .++.|+.+|.+- .
T Consensus 188 yIp~~egd~Yy~G~~~GG~~~~vl~--m~~~~~~~i~~D~~n~IiA~WHDESHLNkyf~~~kp~~~LsPeY~~~-----~ 260 (287)
T d1o7qa_ 188 YIPFGEGDFYYHAAIFGGTPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNKPTKILSPEYCWD-----Y 260 (287)
T ss_dssp CCCTTCCSCCEEEEEEEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHHHSCCSEEECGGGSBC-----G
T ss_pred cccCCCCceEEEeeecCCCHHHHHH--HHHHHHHhccCcccCCcceecccHHHHhhHHHhCCCCcccChhhcCC-----c
Confidence 4442 2235555544223333322 33444444332 333333445666778876554 478888887642 1
Q ss_pred cccccccCCceEeecccCCC
Q 040435 627 ALNLTQIDNGAVVHYNGNNK 646 (1991)
Q Consensus 627 ~~~~~~~~n~~IiHY~g~~K 646 (1991)
. .....++||||+....|
T Consensus 261 ~--~~~~~~~kiv~l~~~~k 278 (287)
T d1o7qa_ 261 H--IGLPADIKLVKMSWQTK 278 (287)
T ss_dssp G--GCCCTTCCSCSEEECCC
T ss_pred c--cCCCCCceEEEEeccCc
Confidence 1 11234568999986554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.16 E-value=2.3 Score=40.76 Aligned_cols=77 Identities=10% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHCccCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1244 EPALEHYSCMVDMLARAG---ELDIAIDLINQMPDNLKAT-ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1244 ~P~~~~y~~Li~~l~r~G---~~eeA~~l~~~m~~~~~pd-~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
.|++.+--....++.+.. ++++|+.++++.....+.+ ...|.-|.-+|.+.|+++.|.+.++++++++|++..+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~ 111 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence 345666666667777664 4567888888776533334 367888889999999999999999999999999876443
Q ss_pred H
Q 040435 1320 L 1320 (1991)
Q Consensus 1320 l 1320 (1991)
+
T Consensus 112 L 112 (124)
T d2pqrb1 112 L 112 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=82.72 E-value=20 Score=33.78 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCc
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVK 1347 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~ 1347 (1991)
.-.+.....+|.-+.-.++++.+++-+.-+|...+-++++|.+.|...++..+...--++|++
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 334445555555555555555555554445555555566666666666655555555555553
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| >d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: alpha-1,3-galactosyltransferase-like domain: Glycosyltransferase A catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.15 E-value=4.1 Score=44.31 Aligned_cols=121 Identities=10% Similarity=-0.005 Sum_probs=67.1
Q ss_pred cccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCC--CcccccceeEeeh
Q 040435 492 VYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPN--ACGWAFGMNMFDL 569 (1991)
Q Consensus 492 llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~yfNsGVll~nl 569 (1991)
++.++|-+.|+|+|++|.+.+.+- .| +..+|+.+.+.-...+ ....+-.+|.-.-+++.+ +-|+-.|+.==..
T Consensus 138 ~~~e~DyLf~~DaDm~f~~~vg~E---~L-~~lvgv~HP~~y~~~~-~~~~yErrp~S~AyIp~~egd~Yy~G~~~GG~~ 212 (283)
T d1lzia_ 138 FLSEVDYLVCVDVDMEFRDHVGVE---IL-TPLFGTLHPGFYGSSR-EAFTYERRPQSQAYIPKDEGDFYYLGGFFGGSV 212 (283)
T ss_dssp HHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEBCTTTTTCCG-GGSCCCCCTTSTTCCCTTCCSCCBCTTEEEEEH
T ss_pred hhhcCCEEEEeecceEEecccccE---Ee-cCeeeEecccccCCCC-CCCCcccCcceeeeccCCCCCeEEEeeeeCCCH
Confidence 345699999999999999999652 23 5677777665432111 111222334333344432 2366655443333
Q ss_pred HHHHHhhHHHHHHHHHHh-chhccccccCCCCchhhhhcc--ccccccccccc
Q 040435 570 KEWRKRNITGIYHYWQDA-NEDRTLWKLGTLPPGLITFYN--LTYPLDRSWHV 619 (1991)
Q Consensus 570 ~~wR~~~~~~~~~~~~~~-~~~~~~~~~~dqd~~n~~f~~--~~~~L~~~wN~ 619 (1991)
....+ +++.+..++.. .++...-.+.|-.-+|-.|.. .++.|+.+|.+
T Consensus 213 ~~vl~--m~~~~~~~i~~D~~n~IiA~WHDEShlNkyf~~nkp~kvLsPeY~~ 263 (283)
T d1lzia_ 213 QEVQR--LTRACHQAMMVDQANGIEAVWHDESHLNKYLLRHKPTKVLSPEYLW 263 (283)
T ss_dssp HHHHH--HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHSCCSEEECGGGSB
T ss_pred HHHHH--HHHHHHHHHHHHhcCCceeeecchhHhhhHHHHCCCCceeChhhcC
Confidence 33333 34444444433 233333345566678876655 37888888864
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