Citrus Sinensis ID: 040444

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLIPLDNGSHGIILKKLQEQKEKKTQCRKKRDDFLSKGFKLVL
cccccHHHHHHHHHccccccccEEccccHHHHHHcccHHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccccccEEEEccccEEEEEcccccEEEEcccccEEEEccccccccccccccccEEEEEEEEccccccEEEEEEEEEEcccccccccccccEEEEEEcccccEEEEcccccccEEEEEEEEEcccccccEEEEccEEEEEEEcccccccccEEEEEEccccEEEEEccccccccccccEEEEEEEccEEEEEEEccccEEEEEEEEEccccccEEEEEEEccccccccccccccEEEEEEEccEEEEEEEcccEEEEEEccccEEEEEEEccccccEEEEEEEcccccccccccccEEHHHHHHHHHHHHHHHHHHHHHccccEEEc
cccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEcccEEEEEccccccccccccccccccccEEEEEcccEEEEEEEccccEEEEccccccEEEEccccccccccccccEEEEEEEEEccccccEEEEEEEEEcccccccccccccEEEEEEEcccccEEEEEcccccccEcccccccccccccccEEEccEEEEEEEEccccccccEEEEEEccccccccccccccccccccEEEEEEEEccEEEEEEEccccEEEEEEEEcccccccccEEEEEccccccccccccccEEEEEEccEEEEEEEccccEEEEEEEcccEEEEEEEcccccccEEEEEcccEEEccccccccEEEcccHHHHHccccHHHHHHHHHcccEEEc
mskvpldvvtgtlyqlpvktLLRYrclsrplcsiiddpdfiKLQLNNSIATKSHLRLILKGLHLYSVEldsldkaipfnhypesiwtgtevfgscngllalsnsdqdialfnpatrqlfklpveyidlpdkscirgfvfygfghdlvsdDYKVVRMVQFkkdeddnlgcfvEYEVKVFSLknrswtrvkklPNYLRFMFQFYFHLLHRRGYGVYVNGVVhwvsprrpefgignLIVAFDLgleefrllpqpnygarekdFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMfsidrcrsissfrflrplicsnedggdkVLLEVNGEKLVWYDWKRKKLKTvkidggpdsFVACICVeslipldngshgIILKKLQEQKEKKTQCRKKRDDFLSKGFKLVL
mskvpldvvtgtlyqlpvkTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKkdeddnlgcfVEYEVKvfslknrswtrvkklpNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLIcsnedggdkvLLEVNgeklvwydwkRKKLKtvkidggpdSFVACICVESLIPLDNGSHGIILKKLqeqkekktqcrkkrddflskgfklvl
MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRgygvyvngvvHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLIPLDNGSHGiilkklqeqkekkTQCRKKRDDFLSKGFKLVL
*****LDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLIPLDNGSHGIILK****************************
*SKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLIPLDN*************************DFLSKGFKLVL
MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLIPLDNGSHGIILKKLQE**********KRDDFLSKGFKLVL
*SKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLIPLDNGSHGIILKKLQEQKE*KTQCRKKRDDFLSKGFKLVL
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILKGLHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDSFVACICVESLIPLDNGSHGIILKKLQEQKEKKTQCRKKRDDFLSKGFKLVL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query409 2.2.26 [Sep-21-2011]
Q9SU30413 F-box protein CPR30 OS=Ar yes no 0.992 0.983 0.509 1e-112
Q9SUY0402 F-box protein At4g22390 O no no 0.970 0.987 0.408 1e-74
Q8GXC7427 F-box/kelch-repeat protei no no 0.831 0.796 0.305 2e-36
Q9SFC7417 F-box protein At3g07870 O no no 0.845 0.829 0.285 3e-24
Q9LIR8364 F-box/kelch-repeat protei no no 0.728 0.818 0.290 4e-22
Q9FVV8392 Putative F-box protein At no no 0.691 0.721 0.233 3e-14
Q9SJ06396 F-box protein At2g21930 O no no 0.787 0.813 0.252 4e-14
Q9LPW2416 Putative F-box/kelch-repe no no 0.667 0.656 0.238 2e-13
Q9LUM6368 F-box protein At3g17710 O no no 0.831 0.923 0.23 3e-13
Q9FGS3357 Putative F-box protein At no no 0.726 0.831 0.222 2e-12
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function desciption
 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/416 (50%), Positives = 281/416 (67%), Gaps = 10/416 (2%)

Query: 1   MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILK 60
           M+ +P+D+V     +LP KTL+R R LS+P   +I+DPDFI+  L+  + T  HL ++L+
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query: 61  G-LHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLF 119
           G L LYSV+LDSLD      H P      TEVFGS NGL+ LSNS  D+A+FNP+TRQ+ 
Sbjct: 61  GALRLYSVDLDSLDSVSDVEH-PMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIH 119

Query: 120 KLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFS 179
           +LP   IDLPD S  RG+VFYG G+D VSDDYKVVRMVQFK D +D LGC   YEVKVFS
Sbjct: 120 RLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFS 179

Query: 180 LKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFD 239
           LK  SW R++ + + ++ +F FY+HLL+RRGYGV     +HWV PRRP     NLIV FD
Sbjct: 180 LKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFD 239

Query: 240 LGLEEFRLLPQPNYGAREK-DFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSK 298
           L LEEF ++  P   A    D  +D+G L+G +CLMCNYD   VDVWMMKEY +++SW+K
Sbjct: 240 LALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTK 299

Query: 299 MFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDS 358
           +F++ + +S+ SF ++RPL+ S +    KVLLE+N  KLVW+D + KK+ T++I   P S
Sbjct: 300 VFTVQKPKSVKSFSYMRPLVYSKDK--KKVLLELNNTKLVWFDLESKKMSTLRIKDCPSS 357

Query: 359 FVACICVESLIPLDNGS-HGIILKKLQEQKEKK----TQCRKKRDDFLSKGFKLVL 409
           + A + V SL+    G  + I  +K Q+ KE +     Q  K+RDDFLSKGFKLVL
Sbjct: 358 YSAELVVSSLVLGCKGDLNNIKYRKEQQAKEAREAKIMQNTKRRDDFLSKGFKLVL 413
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9FVV8|FB87_ARATH Putative F-box protein At1g71320 OS=Arabidopsis thaliana GN=At1g71320 PE=4 SV=1 Back     alignment and function description
>sp|Q9SJ06|FB115_ARATH F-box protein At2g21930 OS=Arabidopsis thaliana GN=At2g21930 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description
>sp|Q9LUM6|FB157_ARATH F-box protein At3g17710 OS=Arabidopsis thaliana GN=At3g17710 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGS3|FB287_ARATH Putative F-box protein At5g50220 OS=Arabidopsis thaliana GN=At5g50220 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
30682162413 F-box protein CPR30 [Arabidopsis thalian 0.992 0.983 0.509 1e-111
297809553414 F-box family protein [Arabidopsis lyrata 0.992 0.980 0.517 1e-110
110738553413 hypothetical protein [Arabidopsis thalia 0.992 0.983 0.507 1e-110
224137296419 predicted protein [Populus trichocarpa] 0.995 0.971 0.489 1e-108
4725955408 putative protein [Arabidopsis thaliana] 0.973 0.975 0.495 1e-105
255583935395 conserved hypothetical protein [Ricinus 0.941 0.974 0.503 1e-104
224089631400 predicted protein [Populus trichocarpa] 0.963 0.985 0.491 1e-103
297799772406 hypothetical protein ARALYDRAFT_329378 [ 0.985 0.992 0.478 1e-102
224053103408 predicted protein [Populus trichocarpa] 0.958 0.960 0.456 7e-86
297788539401 hypothetical protein ARALYDRAFT_333369 [ 0.960 0.980 0.431 9e-78
>gi|30682162|ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana] gi|145333023|ref|NP_001078377.1| F-box protein CPR30 [Arabidopsis thaliana] gi|142989747|sp|Q9SU30.2|CPR30_ARATH RecName: Full=F-box protein CPR30; AltName: Full=Protein CONSTITUTIVE EXPRESSER OF PR GENES 30 gi|332657747|gb|AEE83147.1| F-box protein CPR30 [Arabidopsis thaliana] gi|332657748|gb|AEE83148.1| F-box protein CPR30 [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/416 (50%), Positives = 281/416 (67%), Gaps = 10/416 (2%)

Query: 1   MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILK 60
           M+ +P+D+V     +LP KTL+R R LS+P   +I+DPDFI+  L+  + T  HL ++L+
Sbjct: 1   MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query: 61  G-LHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLF 119
           G L LYSV+LDSLD      H P      TEVFGS NGL+ LSNS  D+A+FNP+TRQ+ 
Sbjct: 61  GALRLYSVDLDSLDSVSDVEH-PMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIH 119

Query: 120 KLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFS 179
           +LP   IDLPD S  RG+VFYG G+D VSDDYKVVRMVQFK D +D LGC   YEVKVFS
Sbjct: 120 RLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFS 179

Query: 180 LKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFD 239
           LK  SW R++ + + ++ +F FY+HLL+RRGYGV     +HWV PRRP     NLIV FD
Sbjct: 180 LKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFD 239

Query: 240 LGLEEFRLLPQPNYGAREK-DFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSK 298
           L LEEF ++  P   A    D  +D+G L+G +CLMCNYD   VDVWMMKEY +++SW+K
Sbjct: 240 LALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTK 299

Query: 299 MFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDS 358
           +F++ + +S+ SF ++RPL+ S +    KVLLE+N  KLVW+D + KK+ T++I   P S
Sbjct: 300 VFTVQKPKSVKSFSYMRPLVYSKDK--KKVLLELNNTKLVWFDLESKKMSTLRIKDCPSS 357

Query: 359 FVACICVESLIPLDNGS-HGIILKKLQEQKEKK----TQCRKKRDDFLSKGFKLVL 409
           + A + V SL+    G  + I  +K Q+ KE +     Q  K+RDDFLSKGFKLVL
Sbjct: 358 YSAELVVSSLVLGCKGDLNNIKYRKEQQAKEAREAKIMQNTKRRDDFLSKGFKLVL 413

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297809553|ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297318497|gb|EFH48919.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|110738553|dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224137296|ref|XP_002322522.1| predicted protein [Populus trichocarpa] gi|222867152|gb|EEF04283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis thaliana] gi|7267958|emb|CAB78299.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255583935|ref|XP_002532715.1| conserved hypothetical protein [Ricinus communis] gi|223527542|gb|EEF29664.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224089631|ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|222854764|gb|EEE92311.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297799772|ref|XP_002867770.1| hypothetical protein ARALYDRAFT_329378 [Arabidopsis lyrata subsp. lyrata] gi|297313606|gb|EFH44029.1| hypothetical protein ARALYDRAFT_329378 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297788539|ref|XP_002862356.1| hypothetical protein ARALYDRAFT_333369 [Arabidopsis lyrata subsp. lyrata] gi|297307785|gb|EFH38614.1| hypothetical protein ARALYDRAFT_333369 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.992 0.983 0.490 5.4e-102
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.973 0.990 0.392 6.3e-69
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.422 0.405 0.339 1.3e-31
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.828 0.812 0.279 5.9e-25
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.437 0.491 0.301 3.4e-20
TAIR|locus:2119787411 AT4G19940 "AT4G19940" [Arabido 0.826 0.822 0.226 1.3e-10
TAIR|locus:2058480436 AT2G40920 "AT2G40920" [Arabido 0.850 0.798 0.235 1.4e-10
TAIR|locus:2058470449 AT2G40910 "AT2G40910" [Arabido 0.452 0.412 0.293 1.9e-10
TAIR|locus:2090582368 AT3G17710 "AT3G17710" [Arabido 0.374 0.415 0.251 5.9e-10
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.672 0.661 0.233 1e-09
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 204/416 (49%), Positives = 270/416 (64%)

Query:     1 MSKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDFIKLQLNNSIATKSHLRLILK 60
             M+ +P+D+V     +LP KTL+R R LS+P   +I+DPDFI+  L+  + T  HL ++L+
Sbjct:     1 MATIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR 60

Query:    61 G-LHLYSVELDSLDKAIPFNHYPESIWTGTEVFGSCNGLLALSNSDQDIALFNPATRQLF 119
             G L LYSV+LDSLD      H P      TEVFGS NGL+ LSNS  D+A+FNP+TRQ+ 
Sbjct:    61 GALRLYSVDLDSLDSVSDVEH-PMKRGGPTEVFGSSNGLIGLSNSPTDLAVFNPSTRQIH 119

Query:   120 KLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFS 179
             +LP   IDLPD S  RG+VFYG G+D VSDDYKVVRMVQFK D +D LGC   YEVKVFS
Sbjct:   120 RLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKVFS 179

Query:   180 LKNRSWTRVKKLPNYLRFMFQFYFHLLHRRXXXXXXXXXXHWVSPRRPEFGIGNLIVAFD 239
             LK  SW R++ + + ++ +F FY+HLL+RR          HWV PRRP     NLIV FD
Sbjct:   180 LKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFD 239

Query:   240 LGLEEFRLLPQPNYGAREK-DFVLDVGALEGHMCLMCNYDLVKVDVWMMKEYGLKESWSK 298
             L LEEF ++  P   A    D  +D+G L+G +CLMCNYD   VDVWMMKEY +++SW+K
Sbjct:   240 LALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSWTK 299

Query:   299 MFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNGEKLVWYDWKRKKLKTVKIDGGPDS 358
             +F++ + +S+ SF ++RPL+ S +    KVLLE+N  KLVW+D + KK+ T++I   P S
Sbjct:   300 VFTVQKPKSVKSFSYMRPLVYSKDK--KKVLLELNNTKLVWFDLESKKMSTLRIKDCPSS 357

Query:   359 FVACICVESLI-----PLDNGSHGXXXXXXXXXXXXXTQCRKKRDDFLSKGFKLVL 409
             + A + V SL+      L+N  +               Q  K+RDDFLSKGFKLVL
Sbjct:   358 YSAELVVSSLVLGCKGDLNNIKYRKEQQAKEAREAKIMQNTKRRDDFLSKGFKLVL 413
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042177 "negative regulation of protein catabolic process" evidence=IMP
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058480 AT2G40920 "AT2G40920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058470 AT2G40910 "AT2G40910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090582 AT3G17710 "AT3G17710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SU30CPR30_ARATHNo assigned EC number0.50960.99260.9830yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT4G12560
F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cyclin-like F-box (InterPro-IPR001810), F-box associated (InterPro-IPR006527), F-box associated type 1 (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G22390.1); Has 1046 Blast hits to 1041 proteins in 43 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1044; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (413 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT1G43720
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (314 aa)
      • 0.790
LCR46
LCR46 (Low-molecular-weight cysteine-rich 46); Encodes a member of a family of small,secreted, [...] (91 aa)
      • 0.788
AT1G15680
F-box family protein; F-box family protein; FUNCTIONS IN- molecular_function unknown; INVOLVED [...] (410 aa)
      • 0.788
AT1G09320
agenet domain-containing protein; agenet domain-containing protein; FUNCTIONS IN- RNA binding; [...] (517 aa)
      • 0.599
AT5G36125
transposable element gene; copia-like retrotransposon family, has a 0. P-value blast match to G [...] (1291 aa)
      • 0.562
AT4G08100
transposable element gene; gypsy-like retrotransposon family, has a 1.2e-123 P-value blast matc [...] (1289 aa)
      • 0.562
AT4G07850
transposable element gene; gypsy-like retrotransposon family, has a 3.2e-135 P-value blast matc [...] (1358 aa)
      • 0.562
AT4G07500
transposable element gene; similar to unknown protein [Arabidopsis thaliana] (TAIR-AT2G09865.1) [...] (239 aa)
      • 0.562
AT4G04410
transposable element gene; copia-like retrotransposon family, has a 1.7e-176 P-value blast matc [...] (1354 aa)
      • 0.562
AT4G04380
transposable element gene; copia-like retrotransposon family, has a 7.5e-248 P-value blast matc [...] (1163 aa)
      • 0.562

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 4e-20
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 88.2 bits (219), Expect = 4e-20
 Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 28/215 (13%)

Query: 92  FGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPD-KSCIRGFVFYGFGHDLVSDD 150
              C+GL+  S   + + ++NP+T Q  +     +  P  +   +    Y  G+D +   
Sbjct: 1   VVPCDGLICFSYGKR-LVVWNPSTGQ-SRW----LPTPKSRRSNKESDTYFLGYDPIEKQ 54

Query: 151 YKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRG 210
           YKV+       +         + E +V++L + SW  ++  P           H L  R 
Sbjct: 55  YKVLCFSDRSGN-------RNQSEHQVYTLGSNSWRTIECSP---------PHHPLKSR- 97

Query: 211 YGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLPQPNYGAREKDFVLDVGALEGH 270
            GV +NGV+++++    +      IV+FD+  E F+       G  +    L +   +G 
Sbjct: 98  -GVCINGVLYYLA-YTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGK 155

Query: 271 MCLMC-NYDLVKVDVWMMKEYGLKESWSKMFSIDR 304
           + ++    D    D+W++ + G K+ WSK+F++  
Sbjct: 156 LAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVPI 189

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 409
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.77
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.67
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.39
PHA02713557 hypothetical protein; Provisional 98.9
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.81
PHA03098534 kelch-like protein; Provisional 98.71
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.69
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.62
PHA02713557 hypothetical protein; Provisional 98.59
PLN02153341 epithiospecifier protein 98.56
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.54
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.53
PHA02790480 Kelch-like protein; Provisional 98.52
PLN02193470 nitrile-specifier protein 98.46
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.45
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.35
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.2
PLN02153341 epithiospecifier protein 98.19
PHA02790480 Kelch-like protein; Provisional 98.14
PHA03098534 kelch-like protein; Provisional 98.05
PLN02193470 nitrile-specifier protein 97.93
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.71
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.64
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.61
KOG1230 521 consensus Protein containing repeated kelch motifs 97.51
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.31
KOG4693392 consensus Uncharacterized conserved protein, conta 97.07
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 96.9
KOG4693392 consensus Uncharacterized conserved protein, conta 96.61
KOG0379482 consensus Kelch repeat-containing proteins [Genera 96.46
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.26
KOG2997366 consensus F-box protein FBX9 [General function pre 95.88
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 94.98
KOG1230 521 consensus Protein containing repeated kelch motifs 94.04
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 92.57
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 92.44
PF1396450 Kelch_6: Kelch motif 92.2
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 92.17
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 91.87
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 89.96
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 88.93
PF1396450 Kelch_6: Kelch motif 88.66
KOG2055514 consensus WD40 repeat protein [General function pr 87.38
smart0061247 Kelch Kelch domain. 87.11
smart00284255 OLF Olfactomedin-like domains. 86.83
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 84.44
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 83.85
KOG4341483 consensus F-box protein containing LRR [General fu 82.51
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 81.57
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1.3e-36  Score=275.00  Aligned_cols=225  Identities=21%  Similarity=0.369  Sum_probs=165.1

Q ss_pred             EecccceEEEeeCCccEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcce
Q 040444           92 FGSCNGLLALSNSDQDIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFV  171 (409)
Q Consensus        92 ~~sc~GLl~l~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~  171 (409)
                      ++|||||||+... ..++||||+||+++.||+++.....    .....+|||||+.+++||||++.....       ...
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~----~~~~~~~~G~d~~~~~YKVv~~~~~~~-------~~~   68 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSN----KESDTYFLGYDPIEKQYKVLCFSDRSG-------NRN   68 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccc----cccceEEEeecccCCcEEEEEEEeecC-------CCC
Confidence            4799999999864 7899999999999999986542111    022268999999999999999976432       113


Q ss_pred             ecEEEEEEcCCCceEEccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCccee-eecC
Q 040444          172 EYEVKVFSLKNRSWTRVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFR-LLPQ  250 (409)
Q Consensus       172 ~~~~~vyss~t~~Wr~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~-~i~l  250 (409)
                      ...++||++++++||.+...+.         ...  ....+|++||++||++....+ .....|++||+++|+|+ .+++
T Consensus        69 ~~~~~Vys~~~~~Wr~~~~~~~---------~~~--~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~  136 (230)
T TIGR01640        69 QSEHQVYTLGSNSWRTIECSPP---------HHP--LKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPL  136 (230)
T ss_pred             CccEEEEEeCCCCccccccCCC---------Ccc--ccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeec
Confidence            4689999999999999975441         111  123389999999999975432 11137999999999999 5999


Q ss_pred             CCCCCCCCCceEEEEEeCCeEEEEEecCC-CeEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEE
Q 040444          251 PNYGAREKDFVLDVGALEGHMCLMCNYDL-VKVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVL  329 (409)
Q Consensus       251 P~~~~~~~~~~~~L~~~~G~L~~~~~~~~-~~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~il  329 (409)
                      |. ..........|++++|+||++..... ..++||+|++++. ..|+|+++|+............|+++..  + ++|+
T Consensus       137 P~-~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~-~~W~k~~~i~~~~~~~~~~~~~~~~~~~--~-g~I~  211 (230)
T TIGR01640       137 PC-GNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGK-QEWSKLFTVPIPPLPDLVDDNFLSGFTD--K-GEIV  211 (230)
T ss_pred             Cc-cccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCCC-CceeEEEEEcCcchhhhhhheeEeEEee--C-CEEE
Confidence            97 33112223579999999999988643 4799999999875 5599999998643332222256888886  5 6666


Q ss_pred             EEEcC--cE-EEEEECCCC
Q 040444          330 LEVNG--EK-LVWYDWKRK  345 (409)
Q Consensus       330 l~~~~--~~-l~~yd~~~~  345 (409)
                      +....  .. +++||++++
T Consensus       212 ~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       212 LCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             EEeCCCCceEEEEEeccCC
Confidence            66553  34 999999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.12
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.07
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.02
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.02
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.99
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.99
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.98
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.96
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.81
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.79
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.76
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.75
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.72
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.72
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.67
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.62
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.6
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.53
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.52
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.19
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.77
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.55
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.48
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 97.23
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.13
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.4
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 95.68
3jrp_A379 Fusion protein of protein transport protein SEC13 94.97
3jro_A 753 Fusion protein of protein transport protein SEC13 93.37
4e54_B435 DNA damage-binding protein 2; beta barrel, double 93.13
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 92.02
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 91.7
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 91.04
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 90.14
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 90.02
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 89.53
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 89.26
3jrp_A379 Fusion protein of protein transport protein SEC13 89.14
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 88.96
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 87.77
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 86.81
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 86.27
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 85.13
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 85.05
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 84.59
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 83.87
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 83.8
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 83.35
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 83.3
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 82.98
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 82.84
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 82.64
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 82.55
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 81.86
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 80.87
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
Probab=99.12  E-value=6.7e-08  Score=90.04  Aligned_cols=198  Identities=11%  Similarity=0.069  Sum_probs=124.8

Q ss_pred             cEEEEcccccceeccCCCCCCCCCCCCCCCeeEEEEeeecCCCCEEEEEEEEeecCCCCCCCcceecEEEEEEcCCCceE
Q 040444          107 DIALFNPATRQLFKLPVEYIDLPDKSCIRGFVFYGFGHDLVSDDYKVVRMVQFKKDEDDNLGCFVEYEVKVFSLKNRSWT  186 (409)
Q Consensus       107 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~~g~d~~~~~ykVv~~~~~~~~~~~~~~~~~~~~~~vyss~t~~Wr  186 (409)
                      .++++||.|++|..+|+.+..+.      .   ++....   ++ +++.++.......    ......+++|+..+++|+
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~------~---~~~~~~---~~-~lyv~GG~~~~~~----~~~~~~~~~~d~~~~~W~  130 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRC------L---FGLGEA---LN-SIYVVGGREIKDG----ERCLDSVMCYDRLSFKWG  130 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEE------S---CEEEEE---TT-EEEEECCEESSTT----CCBCCCEEEEETTTTEEE
T ss_pred             ceEEecCCCCeEEECCCCCcchh------c---eeEEEE---CC-EEEEEeCCcCCCC----CcccceEEEECCCCCcEe
Confidence            48899999999999988764311      1   111111   12 4555554321000    123457899999999999


Q ss_pred             EccccCcccccceeeeeeeeecccceEEECCeEEEEeecCCCCCCccEEEEEECCCcceeeec-CCCCCCCCCCceEEEE
Q 040444          187 RVKKLPNYLRFMFQFYFHLLHRRGYGVYVNGVVHWVSPRRPEFGIGNLIVAFDLGLEEFRLLP-QPNYGAREKDFVLDVG  265 (409)
Q Consensus       187 ~~~~~p~~~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~~L~  265 (409)
                      .++.+|.          ..  ....++.++|.+|.+............+..||+.+.+|+.++ +|. +.    .....+
T Consensus       131 ~~~~~p~----------~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r----~~~~~~  193 (315)
T 4asc_A          131 ESDPLPY----------VV--YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT-AR----SLFGAT  193 (315)
T ss_dssp             ECCCCSS----------CC--BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS-CC----BSCEEE
T ss_pred             ECCCCCC----------cc--cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC-ch----hceEEE
Confidence            9988772          21  234567899999999865322223346999999999999874 343 22    122467


Q ss_pred             EeCCeEEEEEecCCC--eEEEEEEeecCCCCceeEEEEeecccccCCcceeeeEEEEeecCCCEEEEEEcC---------
Q 040444          266 ALEGHMCLMCNYDLV--KVDVWMMKEYGLKESWSKMFSIDRCRSISSFRFLRPLICSNEDGGDKVLLEVNG---------  334 (409)
Q Consensus       266 ~~~G~L~~~~~~~~~--~~~IW~l~~~~~~~~W~~~~~I~~~~~~~~~~~~~p~~~~~~~~~~~ill~~~~---------  334 (409)
                      ..+|+|+++......  .-++|+++-.  ...|+.+..++...      .....+..   + +.|++....         
T Consensus       194 ~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r------~~~~~~~~---~-~~l~v~GG~~~~~~~~~~  261 (315)
T 4asc_A          194 VHDGRIIVAAGVTDTGLTSSAEVYSIT--DNKWAPFEAFPQER------SSLSLVSL---V-GTLYAIGGFATLETESGE  261 (315)
T ss_dssp             EETTEEEEEEEECSSSEEEEEEEEETT--TTEEEEECCCSSCC------BSCEEEEE---T-TEEEEEEEEEEEECTTSC
T ss_pred             EECCEEEEEeccCCCCccceEEEEECC--CCeEEECCCCCCcc------cceeEEEE---C-CEEEEECCccccCcCCcc
Confidence            789999999876433  4578887742  36899875433221      11122222   3 445543211         


Q ss_pred             ------cEEEEEECCCCcEEEE
Q 040444          335 ------EKLVWYDWKRKKLKTV  350 (409)
Q Consensus       335 ------~~l~~yd~~~~~~~~v  350 (409)
                            ..+..||+++++|+.+
T Consensus       262 ~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          262 LVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEEEEEEEEEEETTTTEEEEE
T ss_pred             ccccccCcEEEecCCCChhhhh
Confidence                  2488999999999998
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.15
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.57
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.39
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.1
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.09
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.06
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.13
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.45
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 88.44
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 87.84
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 82.3
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2.3e-12  Score=79.70  Aligned_cols=39  Identities=15%  Similarity=0.306  Sum_probs=36.9

Q ss_pred             CCCcHHHHHHHHhcCCCCceeEEEecccchhhhcCChhH
Q 040444            2 SKVPLDVVTGTLYQLPVKTLLRYRCLSRPLCSIIDDPDF   40 (409)
Q Consensus         2 ~~LP~Dll~eIL~rLP~ksL~R~r~VCK~W~~li~~~~F   40 (409)
                      +.||+|++.+||++||+++|+|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure