Citrus Sinensis ID: 040465

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----

MADQSLSFISNSKKLSLCLNISFVFLLSFFLKISIFSGQTIITTQSLASLSVRGNNIGDGCAGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYLLGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFVSSIVVGVISILTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSPVSDSLFLHIQDDFEERAVPLIGCVDDEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYFTKLLIVLELPLYLPRRLTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFLKLY

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHEEEEEEEcccEEEEccccccHHHHHHHHHHHHHHHHHHccEEEEEEcHHHHHHHHHEEEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHHHHcccccc

cccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHccccHHHHHHHHHccccccccccccccHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHcEEEEEccccccHHHHHHHHHHccccccccEHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHcccccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHcccccccEEEEcccccccccccccHHHHHcccHHHHHHHHcccccccccccccHHHHHHHEEHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEHHcccHHHHHHHHHHHHcccccccHHEHHHHcccHHHHHHHHHHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccEccc

madqslsfisnskklslclNISFVFLLSFFLKISIfsgqtiittqSLASLSVrgnnigdgcaglhdysdyksrckyvtthvdcqpkgyiNYLQIFYCtcgqfpilGHLVLLLWLVVLFYLLGNTAASYFCSSLESLSRilklpptiaGVTLLAlgngasdvFSSIVSftrsddgdvglnsvlGGAFFVSSIVVGVISILTsrkefsvdkpsfIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDrkmslfagspvsdslfLHIQDdfeeravpligcvddekpnhpveknnlqedpeqqclrffnldssFCYYFTKLLIVLelplylprrltipvvsedkwskTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLaflstktcsppnkcllpwlaggflmSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMamnggpngaqiaisgcyagpmfNTLVGLGISLVFssssqypssylipkdsslyETVGFLMAGLLWALVIlprknmkldkfLGIGLLAIYSCFLCVRLASafgflkly

MADQSLSFISNSKKLSLCLNISFVFLLSFFLKISIFSGQTIITTQSLASLSVRGNNIGDGCAGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYLLGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFVSSIVVGVISILTsrkefsvdkPSFIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSPVSDSLFLHIQDDFEERAVPLIGCVDDEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYFTKLLIVLELPLYLPRRLTipvvsedkwsKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFLKLY

MADQSLSFISNSKKLSLClnisfvfllsfflkisifsGQTIITTQSLASLSVRGNNIGDGCAGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPIlghlvlllwlvvlfyllGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFvssivvgvisiLTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSPVSDSLFLHIQDDFEERAVPLIGCVDDEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYFTKllivlelplylPRRLTIPVVSEDKWSKTYAVISVTlaplllaallNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEElvsllvslgkvlgISPSVLGLTVLAWGNSLGDLIanaamamnggpngaQIAISGCYAGPMFNTLVGLGIslvfssssqypssYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFLKLY

************KKLSLCLNISFVFLLSFFLKISIFSGQTIITTQSLASLSVRGNNIGDGCAGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYLLGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFVSSIVVGVISILTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSPVSDSLFLHIQDDFEERAVPLIGCVD*******************QCLRFFNLDSSFCYYFTKLLIVLELPLYLPRRLTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFLKL*

************KKLSLCLNISFVFLLSFFLKISIFSGQ*************************HDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYLLGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFVSSIVVGVISILTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSPVSDSLFLHIQDDFEERAVPLIGCVDDEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYFTKLLIVLELPLYLPRRLTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFLKLY

********ISNSKKLSLCLNISFVFLLSFFLKISIFSGQTIITTQSLASLSVRGNNIGDGCAGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYLLGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFVSSIVVGVISILTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSPVSDSLFLHIQDDFEERAVPLIGCVDDEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYFTKLLIVLELPLYLPRRLTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFLKLY

********ISNSKKLSLCLNISFVFLLSFFLKISIFSG********************DGCAGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYLLGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFVSSIVVGVISILTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKM**************************L*****DEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYFTKLLIVLELPLYLPRRLTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFLKLY

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		594	2.2.26 [Sep-21-2011]
Q9FKP1		570	Cation/calcium exchanger	yes	no	0.902	0.940	0.536	1e-162
Q9LJI2		643	Cation/calcium exchanger	no	no	0.883	0.816	0.481	1e-144
Q9SYG9		644	Cation/calcium exchanger	no	no	0.880	0.812	0.478	1e-143
Q9FKP2		559	Cation/calcium exchanger	no	no	0.882	0.937	0.464	1e-115
Q6J4K2		584	Sodium/potassium/calcium	yes	no	0.845	0.859	0.324	2e-60
Q6AXS0		585	Sodium/potassium/calcium	yes	no	0.843	0.856	0.316	4e-58
Q925Q3		585	Sodium/potassium/calcium	yes	no	0.856	0.870	0.304	4e-55
O04034		546	Cation/calcium exchanger	no	no	0.796	0.866	0.332	1e-54
P34315		590	Putative sodium/calcium e	yes	no	0.853	0.859	0.269	1e-37
P87122		743	Putative cation exchanger	yes	no	0.328	0.262	0.297	2e-24

>sp\|Q9FKP1\|CCX1_ARATH Cation/calcium exchanger 1 OS=Arabidopsis thaliana GN=CCX1 PE=2 SV=1	Back alignment and function desciption

 Score =  572 bits (1475), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 299/557 (53%), Positives = 400/557 (71%), Gaps = 21/557 (3%)

Query: 36  FSGQTIITTQSLASLSVRGNNIGDGCAG-LHDYSDYKSRCKYVTTHVDCQPKGYINYLQI 94
           F+ QT   + S+ +L+       D C+G L    D++S+C Y+ +   C P+GYI+YL+I
Sbjct: 30  FASQTPPPSGSIQTLNSFAGGDSDSCSGGLASLDDHRSKCSYIRSQSKCGPQGYIDYLKI 89

Query: 95  FYCTCGQFPILGHLVLLLWLVVLFYLLGNTAASYFCSSLESLSRILKLPPTIAGVTLLAL 154
           F+C  GQ P+LGHLVL  WL VLFYLLG+TAASYFC SL+SLS++LKL PT+AGVTLL+L
Sbjct: 90  FFCIFGQSPVLGHLVLSAWLFVLFYLLGDTAASYFCPSLDSLSKVLKLSPTMAGVTLLSL 149

Query: 155 GNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFVSSIVVGVISILTSRKEFSVDKPSFIR 214
           GNGA D+FSS+VSFTRS++GD GLNS+LGGAFFVSS VVG I +L   ++ ++D+ SFIR
Sbjct: 150 GNGAPDLFSSVVSFTRSNNGDFGLNSILGGAFFVSSFVVGTICVLIGSRDVAIDRNSFIR 209

Query: 215 DVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGS 274
           DV+F L +LC L LII IG++ +W ++C++SIYL+YV  +S S+ + R +          
Sbjct: 210 DVVFLLVALCCLGLIIFIGKVTIWVALCYLSIYLLYVGFLSVSHFFDRKKR--------- 260

Query: 275 PVSDSLFLHIQDDFEERAVPLIGCVDDEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYY 334
            +SD + L  ++D  E  V L+G + +EK   P      ++  ++  + F +        
Sbjct: 261 -MSDQI-LRSREDLAEMGVSLLGYIAEEKLALP------EKTTQEFKIVFEDSPKRHRSC 312

Query: 335 FTKLLIVLELPLYLPRRLTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSGI 394
           F+ L+ ++ LPLYLPRRLTIPVV E+KWSK  AV+S  +AP+LL  L  +    + GS  
Sbjct: 313 FSVLVSIIGLPLYLPRRLTIPVVCEEKWSKPCAVVSTAIAPVLLTELYCSH---YSGSQR 369

Query: 395 SLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEELVSLLV 454
           +LI Y+ +  +G+I+G LA+L+T+   PP K  L WL GGF MSVTWTY+ A+ELVSLL+
Sbjct: 370 NLILYIISGSIGLIVGILAYLTTEKSHPPKKFSLVWLLGGFTMSVTWTYMIAQELVSLLI 429

Query: 455 SLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNTLVG 514
           SLG + GISPSVLGLTVLAWGNSLGDLIAN  +A +GG +GAQIA+SGCYAGP+FNT++G
Sbjct: 430 SLGNIFGISPSVLGLTVLAWGNSLGDLIANVTVAFHGGNDGAQIALSGCYAGPLFNTVIG 489

Query: 515 LGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLA 574
           LG+ LV SS ++YP  Y+IP D+SL ET+GFLM GLLWALVI+P+K M+LDK +G GLLA
Sbjct: 490 LGVPLVISSLAEYPGVYIIPSDNSLLETLGFLMVGLLWALVIMPKKKMRLDKLVGGGLLA 549

Query: 575 IYSCFLCVRLASAFGFL 591
           IY CFL +RLA  FG L
Sbjct: 550 IYLCFLSLRLARVFGVL 566

Vacuolar membrane-localized H(+)-dependent K(+) and Na(+) transporter.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9LJI2\|CCX3_ARATH Cation/calcium exchanger 3 OS=Arabidopsis thaliana GN=CCX3 PE=2 SV=1	Back alignment and function description

>sp\|Q9SYG9\|CCX4_ARATH Cation/calcium exchanger 4 OS=Arabidopsis thaliana GN=CCX4 PE=2 SV=1	Back alignment and function description

>sp\|Q9FKP2\|CCX2_ARATH Cation/calcium exchanger 2 OS=Arabidopsis thaliana GN=CCX2 PE=3 SV=1	Back alignment and function description

>sp\|Q6J4K2\|NCKX6_HUMAN Sodium/potassium/calcium exchanger 6, mitochondrial OS=Homo sapiens GN=SLC24A6 PE=1 SV=2	Back alignment and function description

>sp\|Q6AXS0\|NCKX6_RAT Sodium/potassium/calcium exchanger 6, mitochondrial OS=Rattus norvegicus GN=Slc24a6 PE=1 SV=1	Back alignment and function description

>sp\|Q925Q3\|NCKX6_MOUSE Sodium/potassium/calcium exchanger 6, mitochondrial OS=Mus musculus GN=Slc24a6 PE=2 SV=2	Back alignment and function description

>sp\|O04034\|CCX5_ARATH Cation/calcium exchanger 5 OS=Arabidopsis thaliana GN=CCX5 PE=2 SV=1	Back alignment and function description

>sp\|P34315\|NCX6_CAEEL Putative sodium/calcium exchanger 6 OS=Caenorhabditis elegans GN=ncx-6 PE=3 SV=3	Back alignment and function description

>sp\|P87122\|YDL6_SCHPO Putative cation exchanger C3A12.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A12.06c PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		594
359481026		593	PREDICTED: cation/calcium exchanger 3-li	0.981	0.983	0.640	0.0
255569430		595	Sodium/potassium/calcium exchanger 6 pre	0.981	0.979	0.675	0.0
356573879		584	PREDICTED: cation/calcium exchanger 3-li	0.946	0.962	0.604	0.0
224123896		516	Ca2+ antiporter/cation exchanger [Populu	0.868	1.0	0.662	1e-177
356571781		597	PREDICTED: cation/calcium exchanger 4-li	0.885	0.881	0.614	1e-176
224144854		518	Ca2+ antiporter/cation exchanger [Populu	0.872	1.0	0.661	1e-175
356560351		589	PREDICTED: cation/calcium exchanger 4-li	0.850	0.857	0.588	1e-171
312282795		577	unnamed protein product [Thellungiella h	0.930	0.958	0.537	1e-165
296085903		519	unnamed protein product [Vitis vinifera]	0.850	0.973	0.558	1e-164
297811951		570	hypothetical protein ARALYDRAFT_488652 [	0.917	0.956	0.535	1e-163

>gi\|359481026\|ref\|XP_002270512.2\| PREDICTED: cation/calcium exchanger 3-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/592 (64%), Positives = 456/592 (77%), Gaps = 9/592 (1%)

Query: 7   SFISNSKKLSLCLNISFVFLLSFFLKISIFSGQTIITTQSLASLSV----RGNNIGDG-C 61
           S IS  +K+SL LN SF+FLLSF LKI  +   +    QS     V    RG  +  G C
Sbjct: 6   SSISRPRKISLFLNTSFLFLLSFCLKIHFYPSTSSFLDQSNEHTKVFSYARGLRMSSGGC 65

Query: 62  AGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYLL 121
            G+H+ +DY+++C YV T   C P GYINYL IFYCTCG+FP  G+ VLLLWL VLFYLL
Sbjct: 66  TGIHECTDYEAKCAYVKTQNGCLPNGYINYLHIFYCTCGRFPAWGYTVLLLWLAVLFYLL 125

Query: 122 GNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSV 181
           GNTAA+YFCSSLE+LSR+LKL PTIAGVTLL+LGNGA+DVF+SIVSFTR+ DGDVGLN V
Sbjct: 126 GNTAANYFCSSLENLSRVLKLSPTIAGVTLLSLGNGAADVFASIVSFTRTSDGDVGLNIV 185

Query: 182 LGGAFFVSSIVVGVISILTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWASI 241
           LGGAFFVSS+VVG+ISI    ++ SVDKPSFIRDV+FFL +L +L++II+IG+++ W S+
Sbjct: 186 LGGAFFVSSVVVGIISIFIGPRQISVDKPSFIRDVIFFLIALASLLVIIIIGKVSFWGSV 245

Query: 242 CFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSPVSDSLFLHIQDDFEERAVPLIGCVDD 301
           CFVSIY  YV AVS ++I  +  +  + L+  SP S S FL   D+  E   PL+G VD+
Sbjct: 246 CFVSIYFFYVCAVSTTHILWKREESVVDLYDISPDSRSFFLRSHDELGENGTPLLGYVDE 305

Query: 302 EKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYFTKLLIVLELPLYLPRRLTIPVVSEDK 361
           EKPN    ++    + E+Q  RF+N DSS CYY+   L VLE PLYLPRRLTIPVVSE++
Sbjct: 306 EKPNLAERRD---PEGEKQSKRFWNPDSSTCYYWGWFLYVLEFPLYLPRRLTIPVVSEER 362

Query: 362 WSKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCS 421
           WSK YAVISVTLAPLLLAAL NTQ     GS  S+I+++ A  +G+I GNLAF++TK  S
Sbjct: 363 WSKLYAVISVTLAPLLLAALWNTQ-RGSAGSKSSIITFMIAGLIGVIFGNLAFVATKKSS 421

Query: 422 PPNKCLLPWLAGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDL 481
           PP +CL PWLAGGFLMSVTWTY+ AEELVSLLVS G +LGISP+VLGLTVLAWGNSLGDL
Sbjct: 422 PPKRCLFPWLAGGFLMSVTWTYIIAEELVSLLVSFGNILGISPAVLGLTVLAWGNSLGDL 481

Query: 482 IANAAMAMNGGPNGAQIAISGCYAGPMFNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYE 541
           IAN A+A NGG +G QIA+SGCYAG MFNTLVGLG+S+VFS+  +YP+ Y+IP D SLYE
Sbjct: 482 IANVALAANGGQDGVQIAVSGCYAGAMFNTLVGLGLSMVFSAWHEYPAPYIIPIDPSLYE 541

Query: 542 TVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFLKL 593
           TVGFLM+GLLWALVILP KNMK D+FLGIGLLAIY CFL +R+A   G LKL
Sbjct: 542 TVGFLMSGLLWALVILPNKNMKPDRFLGIGLLAIYVCFLFLRVARTVGLLKL 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255569430\|ref\|XP_002525682.1\| Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis] gi\|223534982\|gb\|EEF36665.1\| Sodium/potassium/calcium exchanger 6 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356573879\|ref\|XP_003555083.1\| PREDICTED: cation/calcium exchanger 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|224123896\|ref\|XP_002319191.1\| Ca2+ antiporter/cation exchanger [Populus trichocarpa] gi\|222857567\|gb\|EEE95114.1\| Ca2+ antiporter/cation exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356571781\|ref\|XP_003554051.1\| PREDICTED: cation/calcium exchanger 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|224144854\|ref\|XP_002325439.1\| Ca2+ antiporter/cation exchanger [Populus trichocarpa] gi\|222862314\|gb\|EEE99820.1\| Ca2+ antiporter/cation exchanger [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356560351\|ref\|XP_003548456.1\| PREDICTED: cation/calcium exchanger 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|312282795\|dbj\|BAJ34263.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

>gi\|296085903\|emb\|CBI31227.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297811951\|ref\|XP_002873859.1\| hypothetical protein ARALYDRAFT_488652 [Arabidopsis lyrata subsp. lyrata] gi\|297319696\|gb\|EFH50118.1\| hypothetical protein ARALYDRAFT_488652 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		594
TAIR\|locus:2175906		570	CAX7 "AT5G17860" [Arabidopsis	0.515	0.536	0.452	1.1e-118
TAIR\|locus:505006185		644	CCX4 "AT1G54115" [Arabidopsis	0.436	0.402	0.437	6.5e-106
TAIR\|locus:2087507		643	CAX9 "AT3G14070" [Arabidopsis	0.436	0.402	0.430	6.5e-104
TAIR\|locus:2175996		559	AT5G17850 "AT5G17850" [Arabido	0.402	0.427	0.448	1.6e-96
UNIPROTKB\|Q6J4K2		584	SLC24A6 "Sodium/potassium/calc	0.838	0.852	0.284	5e-44
UNIPROTKB\|E2RT66		582	SLC24A6 "Uncharacterized prote	0.826	0.843	0.261	5.9e-41
UNIPROTKB\|J9P9F6		586	SLC24A6 "Uncharacterized prote	0.826	0.837	0.261	5.9e-41
UNIPROTKB\|F1MSI3		584	SLC24A6 "Uncharacterized prote	0.351	0.357	0.294	3.9e-39
RGD\|1565818		585	Slc24a6 "solute carrier family	0.321	0.326	0.293	1.5e-38
MGI\|MGI:2180781		585	Slc24a6 "solute carrier family	0.319	0.324	0.311	4.1e-38

TAIR\|locus:2175906 CAX7 "AT5G17860" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 622 (224.0 bits), Expect = 1.1e-118, Sum P(2) = 1.1e-118
 Identities = 143/316 (45%), Positives = 181/316 (57%)

Query:   276 VSDSLFLHIQDDFEERAVPLIGCVDDEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYF 335
             +SD + L  ++D  E  V L+G + +EK   P EK   QE      + F +        F
Sbjct:   261 MSDQI-LRSREDLAEMGVSLLGYIAEEKLALP-EKTT-QEFK----IVFEDSPKRHRSCF 313

Query:   336 TKXXXXXXXXXXXPRRLTIPVVSEDKWSKTYAVISVTXXXXXXXXXXNTQGEKHLGSGIS 395
             +            PRRLTIPVV E+KWSK  AV+S             +    + GS  +
Sbjct:   314 SVLVSIIGLPLYLPRRLTIPVVCEEKWSKPCAVVSTAIAPVLLTELYCSH---YSGSQRN 370

Query:   396 LISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEEXXXXXXX 455
             LI Y+ +  +G+I+G LA+L+T+   PP K  L WL GGF MSVTWTY+ A+E       
Sbjct:   371 LILYIISGSIGLIVGILAYLTTEKSHPPKKFSLVWLLGGFTMSVTWTYMIAQELVSLLIS 430

Query:   456 XXXXXXISPSVLGLTVLAWGNSLGDLIXXXXXXXXXXXXXXQIAISGCYAGPMFNTLVGL 515
                   ISPSVLGLTVLAWGNSLGDLI              QIA+SGCYAGP+FNT++GL
Sbjct:   431 LGNIFGISPSVLGLTVLAWGNSLGDLIANVTVAFHGGNDGAQIALSGCYAGPLFNTVIGL 490

Query:   516 GIXXXXXXXXXXXXXYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAI 575
             G+             Y+IP D+SL ET+GFLM GLLWALVI+P+K M+LDK +G GLLAI
Sbjct:   491 GVPLVISSLAEYPGVYIIPSDNSLLETLGFLMVGLLWALVIMPKKKMRLDKLVGGGLLAI 550

Query:   576 YSCFLCVRLASAFGFL 591
             Y CFL +RLA  FG L
Sbjct:   551 YLCFLSLRLARVFGVL 566

GO:0005432 "calcium:sodium antiporter activity" evidence=ISS

GO:0006812 "cation transport" evidence=ISS

GO:0015491 "cation:cation antiporter activity" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010260 "organ senescence" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR\|locus:505006185 CCX4 "AT1G54115" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087507 CAX9 "AT3G14070" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2175996 AT5G17850 "AT5G17850" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6J4K2 SLC24A6 "Sodium/potassium/calcium exchanger 6, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RT66 SLC24A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P9F6 SLC24A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MSI3 SLC24A6 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1565818 Slc24a6 "solute carrier family 24 (sodium/lithium/calcium exchanger), member 6" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:2180781 Slc24a6 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 6" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q925Q3	NCKX6_MOUSE	No assigned EC number	0.3042	0.8569	0.8700	yes	no
Q6J4K2	NCKX6_HUMAN	No assigned EC number	0.3247	0.8451	0.8595	yes	no
Q6AXS0	NCKX6_RAT	No assigned EC number	0.3162	0.8434	0.8564	yes	no
Q9FKP1	CCX1_ARATH	No assigned EC number	0.5368	0.9023	0.9403	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00003826001	SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (593 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		594
PLN03151		650	PLN03151, PLN03151, cation/calcium exchanger; Prov	0.0
pfam01699		135	pfam01699, Na_Ca_ex, Sodium/calcium exchanger prot	3e-21
pfam01699		135	pfam01699, Na_Ca_ex, Sodium/calcium exchanger prot	1e-18
COG0530		320	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion	4e-15
COG0530		320	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion	1e-12
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-09
COG0530		320	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion	6e-08
TIGR00367		307	TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchang	2e-07
TIGR00367		307	TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchang	4e-07
COG0530		320	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion	5e-07
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	1e-06
TIGR00367		307	TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchang	4e-05
TIGR00367		307	TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchang	7e-04

>gnl\|CDD\|215604 PLN03151, PLN03151, cation/calcium exchanger; Provisional	Back alignment and domain information

 Score =  582 bits (1502), Expect = 0.0
 Identities = 266/560 (47%), Positives = 378/560 (67%), Gaps = 34/560 (6%)

Query: 61  CAGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYL 120
           C+GLH++  Y  +C+++  H  C   G+ +YL+ FYC+C  F ILG+ VL +WLV LFYL
Sbjct: 94  CSGLHEHEGYADQCEFLKAHPICSSGGFFDYLKFFYCSCEDFRILGYAVLGVWLVALFYL 153

Query: 121 LGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNS 180
           LGNTAA YFC SLE LS++L+LPPT+AGVTLL LGNGA DVF+SI +F   D G+VGLNS
Sbjct: 154 LGNTAADYFCCSLEKLSKLLRLPPTVAGVTLLPLGNGAPDVFASIAAFVGKDAGEVGLNS 213

Query: 181 VLGGAFFVSSIVVGVISILTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWAS 240
           VLGGA FV+ +VVG++S+  + KE  +DK  FIRD+ FFLF+L +L++I+++G++ +  +
Sbjct: 214 VLGGAVFVTCVVVGIVSLCVADKEVQIDKRCFIRDLCFFLFTLVSLLVILMVGKVTVGGA 273

Query: 241 ICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSP---VSDSLFLHIQDDFEERAVPLIG 297
           I FVSIY++Y   V+A+ I  R   R++ L   +P   V  S+F    ++ E    PL+ 
Sbjct: 274 IAFVSIYVVYAFLVAANEIL-RKHARRLKLDVVTPLLPVQGSIFSPSVEEDESMYSPLLE 332

Query: 298 CVDDEKP--------------------NHPVEKNNLQEDPEQQC----LRFFNLDSSFCY 333
              +                       NH   K ++ ++                S F  
Sbjct: 333 SDTESDVPRLQTSLPQWMWASNVAIYSNH-FAKGSVHDEERPPWGWTDEGAEVESSLFS- 390

Query: 334 YFTKLLIVLELPLYLPRRLTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSG 393
             +KL  +LE+PL +PRRLTIP+V ED+WSKTYAV S +LAP+LLA L ++Q +  L + 
Sbjct: 391 -CSKLFSLLEMPLTIPRRLTIPIVEEDRWSKTYAVASASLAPVLLAFLWSSQDDVSLQAR 449

Query: 394 ISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWLAGGFLMSVTWTYVTAEELVSLL 453
           I   +Y     +G  LG LA+  T+   PP + L+PW+ GGF+MS+ W Y+ A ELV+LL
Sbjct: 450 I--AAYFIGVAIGSTLGFLAYKYTEPDRPPRRFLIPWVLGGFIMSIVWFYMIANELVALL 507

Query: 454 VSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNTLV 513
           V+ G + GI+PS+LGLTVLAWGNS+GDL++N A+AMNGG +G QIA+SGCYAGPMFNTLV
Sbjct: 508 VAFGVIFGINPSILGLTVLAWGNSMGDLMSNVALAMNGG-DGVQIAMSGCYAGPMFNTLV 566

Query: 514 GLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLL 573
           GLG+S++  + S+ P SY++P+DSSL+ T+GFL++GL+WALV+LPR +M+ +K LG+GL+
Sbjct: 567 GLGMSMLLGAWSKSPESYMLPEDSSLFYTMGFLVSGLIWALVVLPRNDMRPNKTLGVGLI 626

Query: 574 AIYSCFLCVRLASAFGFLKL 593
           A+Y  FL  R+++A GF+  
Sbjct: 627 ALYLIFLTFRVSTAMGFIPW 646

Length = 650

>gnl\|CDD\|216653 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein	Back alignment and domain information

>gnl\|CDD\|216653 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein	Back alignment and domain information

>gnl\|CDD\|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger related-protein	Back alignment and domain information

>gnl\|CDD\|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger related-protein	Back alignment and domain information

>gnl\|CDD\|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger related-protein	Back alignment and domain information

>gnl\|CDD\|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger related-protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		594
PLN03151		650	cation/calcium exchanger; Provisional	100.0
KOG2399		605	consensus K+-dependent Na+:Ca2+ antiporter [Inorga	100.0
KOG1307		588	consensus K+-dependent Ca2+/Na+ exchanger NCKX1 an	100.0
TIGR00927		1096	2A1904 K+-dependent Na+/Ca+ exchanger.	100.0
PRK10734		325	putative calcium/sodium:proton antiporter; Provisi	100.0
COG0530		320	ECM27 Ca2+/Na+ antiporter [Inorganic ion transport	100.0
TIGR00367		307	K+-dependent Na+/Ca+ exchanger related-protein. Th	100.0
TIGR00846		365	caca2 calcium/proton exchanger. This model is gene	100.0
TIGR00378		349	cax calcium/proton exchanger (cax).	100.0
TIGR00845		928	caca sodium/calcium exchanger 1. This model is spe	99.97
KOG1397		441	consensus Ca2+/H+ antiporter VCX1 and related prot	99.81
PRK10734		325	putative calcium/sodium:proton antiporter; Provisi	99.79
TIGR00367		307	K+-dependent Na+/Ca+ exchanger related-protein. Th	99.78
COG0530		320	ECM27 Ca2+/Na+ antiporter [Inorganic ion transport	99.74
PF01699		140	Na_Ca_ex: Sodium/calcium exchanger protein; InterP	99.73
KOG1306		596	consensus Ca2+/Na+ exchanger NCX1 and related prot	99.7
PF01699		140	Na_Ca_ex: Sodium/calcium exchanger protein; InterP	99.69
COG0387		368	ChaA Ca2+/H+ antiporter [Inorganic ion transport a	99.68
TIGR00846		365	caca2 calcium/proton exchanger. This model is gene	99.68
TIGR00927		1096	2A1904 K+-dependent Na+/Ca+ exchanger.	99.58
TIGR00378		349	cax calcium/proton exchanger (cax).	99.55
PRK10599		366	calcium/sodium:proton antiporter; Provisional	99.49
TIGR00845		928	caca sodium/calcium exchanger 1. This model is spe	99.48
KOG1307		588	consensus K+-dependent Ca2+/Na+ exchanger NCKX1 an	99.45
PLN03151		650	cation/calcium exchanger; Provisional	99.43
PRK10599		366	calcium/sodium:proton antiporter; Provisional	99.02
KOG2399		605	consensus K+-dependent Na+:Ca2+ antiporter [Inorga	98.83
COG0387		368	ChaA Ca2+/H+ antiporter [Inorganic ion transport a	98.8
KOG1397		441	consensus Ca2+/H+ antiporter VCX1 and related prot	98.8
KOG1306		596	consensus Ca2+/Na+ exchanger NCX1 and related prot	98.74

>PLN03151 cation/calcium exchanger; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.2e-97  Score=827.78  Aligned_cols=532  Identities=48%  Similarity=0.876  Sum_probs=435.3

Q ss_pred             CCCCcccccccccccccccccccccCCCCCcccccceeeecccCCCchHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHH
Q 040465           57 IGDGCAGLHDYSDYKSRCKYVTTHVDCQPKGYINYLQIFYCTCGQFPILGHLVLLLWLVVLFYLLGNTAASYFCSSLESL  136 (594)
Q Consensus        57 ~~~~C~~~~~~~~~~~rC~~V~~~~~C~~~g~~~Yl~l~yC~~~~~~~~~~~~~~l~l~~lf~~L~~~a~~~f~~~l~~i  136 (594)
                      ++.+|+.++...++++||+|+|+|++|+++||+||++++||+++..+.+.++++.+|++++|++||.+|+|||||+++.+
T Consensus        90 ~~~~C~~~~~~~~~~~rC~~v~~~~~C~~~~~~~Y~~~~yC~~~~~~~l~~~~l~~~l~~lF~~L~~ta~dyF~p~l~~I  169 (650)
T PLN03151         90 SPVLCSGLHEHEGYADQCEFLKAHPICSSGGFFDYLKFFYCSCEDFRILGYAVLGVWLVALFYLLGNTAADYFCCSLEKL  169 (650)
T ss_pred             CCCChhhHhhcCCchhcCcchhccCCCCCCCeecceeEEEecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            34579999887778999999999999988899999999999998777888888899999999999999999999999999


Q ss_pred             HHHhCCCcchhhHHHHhhccChHHHHHHHHHhhcCCCCccchhhhhhhHHHHHHHHHHHHhhhccCceeeeCCchHHHHH
Q 040465          137 SRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFVSSIVVGVISILTSRKEFSVDKPSFIRDV  216 (594)
Q Consensus       137 s~~l~ls~~vaGvTllAlGns~Pel~~si~a~~~~~~~~la~g~iiGs~if~~~vv~G~~~l~~~~~~~~v~~~~~~rd~  216 (594)
                      |++||+||++||+|++|+|||+||++++++|+..++++++++|+++||++||+++++|+++++...+|++++++++.||+
T Consensus       170 s~~L~lse~vAGvTlLAfGNsaPDlf~si~a~~~~~~~~l~ig~ilGs~lf~~~vV~G~v~l~~~~~pf~v~~~~f~RD~  249 (650)
T PLN03151        170 SKLLRLPPTVAGVTLLPLGNGAPDVFASIAAFVGKDAGEVGLNSVLGGAVFVTCVVVGIVSLCVADKEVQIDKRCFIRDL  249 (650)
T ss_pred             HHHhCCCHHHHHHHHHHHhCCcHHHHHHHHHHHcCCCCceeeehhhhHHHHHHHHHHHHHHHhccCCceeecchhHHHhH
Confidence            99999999999999999999999999999997654678999999999999999999999999854468999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHhHhhhhccccccccCCCCCCCccc---cccccccccccc
Q 040465          217 LFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKMSLFAGSPVSDSLF---LHIQDDFEERAV  293 (594)
Q Consensus       217 ~f~l~a~~~l~~~l~~g~i~~~~~~~ll~~Y~~Yv~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---~~~~~~~~~~~~  293 (594)
                      .||++++.++.+++.+|++++|||++|+++|++|+++++.+++.++++++.+ .+...+..++..   .+..++......
T Consensus       250 ~F~lla~~~l~~~l~~g~v~~~eai~ll~lY~~Yv~vv~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (650)
T PLN03151        250 CFFLFTLVSLLVILMVGKVTVGGAIAFVSIYVVYAFLVAANEILRKHARRLK-LDVVTPLLPVQGSIFSPSVEEDESMYS  328 (650)
T ss_pred             HHHHHHHHHHHHHHHcCeEhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhh-hhhcccccccccccccccchhhhhhhh
Confidence            9999999988888899999999999999999999999988876544322211 111111000000   000000000111


Q ss_pred             CccccCCCCCCCCC-----------cCCCCCC--------CChhh-Hhhhhc--cCCcchhhhhhHHHHhhhcccccccc
Q 040465          294 PLIGCVDDEKPNHP-----------VEKNNLQ--------EDPEQ-QCLRFF--NLDSSFCYYFTKLLIVLELPLYLPRR  351 (594)
Q Consensus       294 pll~~~~~~~~~~~-----------~~~~e~~--------~~~~~-~~~~~~--~~~~~~~~~~~k~~~i~~~P~~l~~~  351 (594)
                      |+++..++++.+..           +.+.+.+        ++++. ..++++  ++.... ..++|++.++++|+.+++|
T Consensus       329 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~-~~~~ki~~ll~~Pl~lll~  407 (650)
T PLN03151        329 PLLESDTESDVPRLQTSLPQWMWASNVAIYSNHFAKGSVHDEERPPWGWTDEGAEVESSL-FSCSKLFSLLEMPLTIPRR  407 (650)
T ss_pred             hhhcccccccchhhccccccccccccccccccchhhhhhhhccccccccCchhhhhhcch-hHHHHHHHHHHhHHHHHHH
Confidence            22221111000000           0000000        00000 000000  000000 0147999999999999999


Q ss_pred             ccccccCCCccchhHHHHHHhHHHHHHHHHHhhccccccCCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccchhh
Q 040465          352 LTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLLPWL  431 (594)
Q Consensus       352 ltIP~v~~~~w~k~l~~~q~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~t~~~~pP~~~~~~~~  431 (594)
                      +|||++|+++|||+++|+|++++|+++.+++..+...  .....+++|.+++++|+++++++|+||++|+||+||...|.
T Consensus       408 LTIP~vd~~~WsK~l~~~q~~l~P~l~~~~~~~~~~~--~~~~~~~vw~~~~~ig~~Lai~vf~~tr~d~PP~~~~~~~~  485 (650)
T PLN03151        408 LTIPIVEEDRWSKTYAVASASLAPVLLAFLWSSQDDV--SLQARIAAYFIGVAIGSTLGFLAYKYTEPDRPPRRFLIPWV  485 (650)
T ss_pred             hcCCCCCcccCCHHHHHHHHHHHHHHHHHHHhhcccc--ccccchHHHHHHHHHHHHHHHHHHHHcCCCCCChhhhHHHH
Confidence            9999999999999999999999999999987654331  12345788888899999999999999999999999988899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchhhhhHHhhhcChhHHHHHHHHHHhcCCCCcceeeeeecchhHHHH
Q 040465          432 AGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPMFNT  511 (594)
Q Consensus       432 ~~gF~~Sv~wI~~~A~~lv~~~~~ig~~~gis~~~lGltv~a~g~sl~dlv~~~~~a~~G~p~~~~~av~a~~Gs~lfn~  511 (594)
                      ++||++|++||+.+|+|+++.++.+|.++|+|++++|+|++|||||+||+++|+++||||+|++ +||++||+|||+||+
T Consensus       486 ~~~f~~Si~wi~~~a~elv~~l~~iG~i~~is~~~lglTvlA~gnsi~Dlian~~lA~~G~~~m-~mA~~a~~ggp~F~i  564 (650)
T PLN03151        486 LGGFIMSIVWFYMIANELVALLVAFGVIFGINPSILGLTVLAWGNSMGDLMSNVALAMNGGDGV-QIAMSGCYAGPMFNT  564 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccHHHHHHHHHHHHcCCchh-HHHHHHhhhhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999855 789999999999999


Q ss_pred             HHHHHHHHHHhccCCCCcceeecCCCchHHHHHHHHHHHHHHHHHhhcCCceechhHHHHHHHHHHHHHHHHHHHHhccc
Q 040465          512 LVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLDKFLGIGLLAIYSCFLCVRLASAFGFL  591 (594)
Q Consensus       512 l~glGl~~l~~~~~~~~~~~~i~~~~~l~~~~~~l~~~L~~~li~v~~~~~~l~r~~G~~Ll~~Y~~fl~~~il~e~~v~  591 (594)
                      ++|+|++++++++..++.++.++.++.+..+.++++.+|+|+++++|.+|||++|..|++++++|++|++++++.|+|++
T Consensus       565 l~glG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~L~~~li~~~~~~f~~~R~~G~~li~~Y~~Fl~~~~~~~~~~~  644 (650)
T PLN03151        565 LVGLGMSMLLGAWSKSPESYMLPEDSSLFYTMGFLVSGLIWALVVLPRNDMRPNKTLGVGLIALYLIFLTFRVSTAMGFI  644 (650)
T ss_pred             HHhccHHHHHHHhhcCCCceeecCCChHHHHHHHHHHHHHHHHHHHHHhCeeechhHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            99999999999887777777777777777778889999999999999999999999999999999999999999999999


Q ss_pred             cc
Q 040465          592 KL  593 (594)
Q Consensus       592 ~~  593 (594)
                      |.
T Consensus       645 ~~  646 (650)
T PLN03151        645 PW  646 (650)
T ss_pred             cc
Confidence            83

>KOG2399 consensus K+-dependent Na+:Ca2+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>PRK10734 putative calcium/sodium:proton antiporter; Provisional	Back alignment and domain information

>COG0530 ECM27 Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00367 K+-dependent Na+/Ca+ exchanger related-protein	Back alignment and domain information

>TIGR00846 caca2 calcium/proton exchanger	Back alignment and domain information

>TIGR00378 cax calcium/proton exchanger (cax)	Back alignment and domain information

>TIGR00845 caca sodium/calcium exchanger 1	Back alignment and domain information

>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK10734 putative calcium/sodium:proton antiporter; Provisional	Back alignment and domain information

>TIGR00367 K+-dependent Na+/Ca+ exchanger related-protein	Back alignment and domain information

>COG0530 ECM27 Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF01699 Na_Ca_ex: Sodium/calcium exchanger protein; InterPro: IPR004837 The sodium/calcium exchangers are a family of integral membrane proteins	Back alignment and domain information

>KOG1306 consensus Ca2+/Na+ exchanger NCX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PF01699 Na_Ca_ex: Sodium/calcium exchanger protein; InterPro: IPR004837 The sodium/calcium exchangers are a family of integral membrane proteins	Back alignment and domain information

>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>TIGR00846 caca2 calcium/proton exchanger	Back alignment and domain information

>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>TIGR00378 cax calcium/proton exchanger (cax)	Back alignment and domain information

>PRK10599 calcium/sodium:proton antiporter; Provisional	Back alignment and domain information

>TIGR00845 caca sodium/calcium exchanger 1	Back alignment and domain information

>KOG1307 consensus K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

>PLN03151 cation/calcium exchanger; Provisional	Back alignment and domain information

>PRK10599 calcium/sodium:proton antiporter; Provisional	Back alignment and domain information

>KOG2399 consensus K+-dependent Na+:Ca2+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1306 consensus Ca2+/Na+ exchanger NCX1 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		594
3v5u_A		320	Uncharacterized membrane protein MJ0091; lipid cub	3e-06
3v5u_A		320	Uncharacterized membrane protein MJ0091; lipid cub	5e-05
3v5u_A		320	Uncharacterized membrane protein MJ0091; lipid cub	7e-05

>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A* Length = 320	Back alignment and structure

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 15/135 (11%)

Query: 446 AEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYA 505
           ++  V     + +   +S  V+G TV+A G SL +++ +A  +    P    I+I     
Sbjct: 20  SDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPG---ISIGNAIG 76

Query: 506 GPMFNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLMAGLLWALVILPRKNMKLD 565
             + N  + LG+S + S          I  D +L + +   +  +++A VI         
Sbjct: 77  SCICNIGLVLGLSAIISP---------IIVDKNLQKNILVYLLFVIFAAVIG---IDGFS 124

Query: 566 KFLGIGLLAIYSCFL 580
              G+ LL ++  +L
Sbjct: 125 WIDGVVLLILFIIYL 139

PyMOL of 3v5u

>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A* Length = 320	Back alignment and structure

>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A* Length = 320	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		594
3v5u_A		320	Uncharacterized membrane protein MJ0091; lipid cub	100.0
3v5u_A		320	Uncharacterized membrane protein MJ0091; lipid cub	99.83

>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*	Back alignment and structure

Probab=100.00  E-value=2.4e-41  Score=352.18  Aligned_cols=296  Identities=19%  Similarity=0.312  Sum_probs=238.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHhCCCcchhhHHHHhhccChHHHHHHHHHhhcCCCCccchhhhhhhHHHH
Q 040465          109 VLLLWLVVLFYLLGNTAASYFCSSLESLSRILKLPPTIAGVTLLALGNGASDVFSSIVSFTRSDDGDVGLNSVLGGAFFV  188 (594)
Q Consensus       109 ~~~l~l~~lf~~L~~~a~~~f~~~l~~is~~l~ls~~vaGvTllAlGns~Pel~~si~a~~~~~~~~la~g~iiGs~if~  188 (594)
                      +.+++++..+.++ ..++|+|+++++.+++++|+||.++|+|++|+|||+||+++++.|..+ |++|+++||++|||+||
T Consensus         4 ~~~~~l~~g~~~l-~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~-g~~diaiGnivGSni~n   81 (320)
T 3v5u_A            4 LGVGYFLLGLILL-YYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYM-HAPGISIGNAIGSCICN   81 (320)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhC-CCCceeeeeecchHHHH
Confidence            3456677777777 789999999999999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhhhccCceeeeCCchHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHhHhhhhccccc
Q 040465          189 SSIVVGVISILTSRKEFSVDKPSFIRDVLFFLFSLCALILIIVIGEINLWASICFVSIYLIYVLAVSASYIYQRSRDRKM  268 (594)
Q Consensus       189 ~~vv~G~~~l~~~~~~~~v~~~~~~rd~~f~l~a~~~l~~~l~~g~i~~~~~~~ll~~Y~~Yv~~~~~~~~~~~~~~~~~  268 (594)
                      +++++|+++++   +|+++ ++.+.||..+++++..++..+..+| +++++|++++.+|++|+.+.+.+++    ++   
T Consensus        82 illvlG~~~li---~p~~v-~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~~~~~----~~---  149 (320)
T 3v5u_A           82 IGLVLGLSAII---SPIIV-DKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTVKNGS----AE---  149 (320)
T ss_dssp             HHTHHHHHHHH---SCBCC-CHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHHHHTB----C----
T ss_pred             HHHHHHHHHHH---ccccc-cHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHhcc----cc---
Confidence            99999999999   67888 6788999999998888777777888 9999999999999999998875431    00   


Q ss_pred             cccCCCCCCCcccccccccccccccCccccCCCCCCCCCcCCCCCCCChhhHhhhhccCCcchhhhhhHHHHhhhccccc
Q 040465          269 SLFAGSPVSDSLFLHIQDDFEERAVPLIGCVDDEKPNHPVEKNNLQEDPEQQCLRFFNLDSSFCYYFTKLLIVLELPLYL  348 (594)
Q Consensus       269 ~~~~~s~~~~~~~~~~~~~~~~~~~pll~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~~~P~~l  348 (594)
                                                      +|+++      + +++            ...|                
T Consensus       150 --------------------------------~~~~~------~-~~~------------~~~~----------------  162 (320)
T 3v5u_A          150 --------------------------------IEENN------D-KNN------------PSVV----------------  162 (320)
T ss_dssp             ---------------------------------------------CCC------------HHHH----------------
T ss_pred             --------------------------------ccccc------c-ccc------------ccHH----------------
Confidence                                            00000      0 000            0000                


Q ss_pred             cccccccccCCCccchhHHHHHHhHHHHHHHHHHhhccccccCCchhHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccc
Q 040465          349 PRRLTIPVVSEDKWSKTYAVISVTLAPLLLAALLNTQGEKHLGSGISLISYLGAAFVGIILGNLAFLSTKTCSPPNKCLL  428 (594)
Q Consensus       349 ~~~ltIP~v~~~~w~k~l~~~q~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~t~~~~pP~~~~~  428 (594)
                                     |  .                             ..                              
T Consensus       163 ---------------~--~-----------------------------~~------------------------------  166 (320)
T 3v5u_A          163 ---------------F--S-----------------------------LV------------------------------  166 (320)
T ss_dssp             ---------------H--H-----------------------------HH------------------------------
T ss_pred             ---------------H--H-----------------------------HH------------------------------
Confidence                           0  0                             00                              


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchhhhhHHhhhcChhHHHHHHHHHHhcCCCCcceeeeeecchhH
Q 040465          429 PWLAGGFLMSVTWTYVTAEELVSLLVSLGKVLGISPSVLGLTVLAWGNSLGDLIANAAMAMNGGPNGAQIAISGCYAGPM  508 (594)
Q Consensus       429 ~~~~~gF~~Sv~wI~~~A~~lv~~~~~ig~~~gis~~~lGltv~a~g~sl~dlv~~~~~a~~G~p~~~~~av~a~~Gs~l  508 (594)
                           .++.+...+..+++.+|+.++.+++.+|+||.++|+|++|+|||+||+++++.+||||++   |+|+|+++|||+
T Consensus       167 -----~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~g~~---~laig~iiGS~i  238 (320)
T 3v5u_A          167 -----LLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLG---GMVLGNVIGSNI  238 (320)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHTTCH---HHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHcCCC---cHHHHHHHhHHH
Confidence                 012234456677999999999999999999999999999999999999999999999998   999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCCCcceeecCCCchHHHHHHHH-HHHHHHHHHhhcCCceechhHHHHHHHHHHH-HHHHHH
Q 040465          509 FNTLVGLGISLVFSSSSQYPSSYLIPKDSSLYETVGFLM-AGLLWALVILPRKNMKLDKFLGIGLLAIYSC-FLCVRL  584 (594)
Q Consensus       509 fn~l~glGl~~l~~~~~~~~~~~~i~~~~~l~~~~~~l~-~~L~~~li~v~~~~~~l~r~~G~~Ll~~Y~~-fl~~~i  584 (594)
                      ||+++.+|++.++.+.       ++  +   ..+..+++ ++++...   ..+++|++|++|..++..|++ |+.+.+
T Consensus       239 fn~~~v~g~~~li~p~-------~~--~---~~d~~~~l~~~~ll~~---~~~~~~i~~~eG~~ll~~Y~~~y~~~~~  301 (320)
T 3v5u_A          239 ADIGGALAVGSLFMHL-------PA--E---NVQMAVLVIMSLLLYL---FAKYSKIGRWQGILFLALYIIAIASLRM  301 (320)
T ss_dssp             HHHHTHHHHHHHHSCB-------CC--C---HHHHHHHHHHHHHHHH---HHHHSCBSHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHhhccc-------cc--h---HHHHHHHHHHHHHHHH---HHhCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998632       22  1   22333332 3333222   247889999999999999999 986543

PyMOL of 3v5u

>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00