Citrus Sinensis ID: 040471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
IMYAKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFFV
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccEEEEEcEEEcccccccccccccccEEEEEEEEEcHHHHHHHHHccccccEEEEccccccccEEEEccccccEEEEEEEEEccEEEEEEcccccEEEEEcccccccHHHHHHHccccccEEEEEEcccccEEEEEEccEEEEEEEcccccccccccccccEEEEEEEcccccHHHHHHccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccEEEcccEEEEEEEEEEccccccccccccHHHcEEEEEEEEccHHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEEccccccEEEEEccccEEEEEEcccccccccHHHHHccccHHHHHEEccccccEEEEEcccHEEEEEcccccccccHHcccHHHEEccccccHHHHHHHHHccccccEEEEc
Coil and Loop (DISEMBL)
imyakgmdritELPTFIIHHIMSYLSAKEIARTSILSKrwclfcisfpilefdqcyflgkaitlmdISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLdvkgsapllDKWIGLAVDNGIKDLVLMVHNMtqedtvcilpqtIFSAKSMATLSLFgcrmeqpsdttTIRLDSLKKLTLENVYINDQMFQKLtnecpsledfeiSACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRlpekvkissnqlknlhfnscenlkaidtdtpnllsftfsydfnpiptiAMNALSMETLFFV
Flexible Loop (DISEMBL)
imyakgmdriTELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFFV
Low Complexity Region (SEG)
IMYAKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKfplledlllrfcrlpEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFFV
Disordered region (IsUnstruct)
*******DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFF*
Disordered Region (DISOPRED)
***AKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFFV
Disordered Region (DISEMBL)
IMYAKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFFV
Disordered Region (DISPRO)
*****GMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
IMYAKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q9LX55	464	Putative F-box/LRR-repeat	yes	no	0.594	0.435	0.288	2e-15
Q9FLA3	377	Putative FBD-associated F	no	no	0.832	0.750	0.244	9e-14
Q8H1M0	442	F-box/FBD/LRR-repeat prot	no	no	0.594	0.457	0.285	2e-13
Q9M190	532	Putative F-box/LRR-repeat	no	no	0.65	0.415	0.301	3e-13
Q9FLA2	438	Putative F-box/FBD/LRR-re	no	no	0.529	0.410	0.289	6e-13
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.620	0.462	0.267	6e-13
Q9FFU7	472	Putative F-box/LRR-repeat	no	no	0.597	0.430	0.265	9e-13
Q9LX54	473	Putative F-box/LRR-repeat	no	no	0.567	0.408	0.299	2e-12
Q2V3N5	491	F-box protein At3g59000 O	no	no	0.502	0.348	0.311	5e-12
Q9FL99	435	F-box/FBD/LRR-repeat prot	no	no	0.655	0.512	0.293	6e-12

>sp|Q9LX55|FBL61_ARATH Putative F-box/LRR-repeat protein At3g59160 OS=Arabidopsis thaliana GN=At3g59160 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 106/229 (46%), Gaps = 27/229 (11%)

Query: 2   MYAKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKA 61
           M +   D I +LP  ++ H++SYL+ KE A TS+LS+RW       P LEFD   +L + 
Sbjct: 7   MDSGSKDMINDLPDALLCHVLSYLTTKEAASTSLLSRRWRYLLAFVPNLEFDDSAYLHRD 66

Query: 62  ITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPL------------ 109
             + +   EK  + FV     +  KL     +       LD++G++PL            
Sbjct: 67  KRVKNPLHEKGLVGFVLTVDDKRKKLSTSFPD--FVDRILDLQGNSPLDKFSLKMVDDHD 124

Query: 110 ------LDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQ 163
                 +  WI   +  G+ DL L++ +M +  +   LP  IF  +++  L+L   R   
Sbjct: 125 PVDPDCVAPWIHKVLVRGVSDLHLVI-DMNEWTS---LPAKIFLTETLVKLTL-KIRDGP 179

Query: 164 PSDTTTIRLDSLKKLTLENVYINDQ--MFQKLTNECPSLEDFEISACWG 210
           P D   + L  LK L LE+V  +++   F KL + CP LE+  +   W 
Sbjct: 180 PIDVKHVHLPKLKTLHLESVMFDEEDIGFSKLLSGCPELEELVLHHIWS 228

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLA3|FBD42_ARATH Putative FBD-associated F-box protein At5g44940 OS=Arabidopsis thaliana GN=At5g44940 PE=4 SV=2

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 40/323 (12%)

Query: 8   DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDI 67
           D I+E P  ++  I+  L  K+  +TS+LSKRW    ++ P L      F      +   
Sbjct: 5   DYISEFPDCLLTQILLNLPTKDSVKTSVLSKRWRNLWLNVPGLRLRTFDF-----PVFPY 59

Query: 68  SDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVL 127
             E+ F+ F+D    RF + + R +  +   ++ +  G    L + IG  VD GI+ L +
Sbjct: 60  PYEEGFVRFMD----RFMEFKCRSRLQKFMITYFEHNGYRDRLMELIGTLVDRGIQHLYV 115

Query: 128 MVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIND 187
            +H   + D    + Q I+ +K++ +L L+   ++ P     + L  LK L LEN++  +
Sbjct: 116 YMHTCNRVD---FIRQNIYKSKTLVSLKLYNVELKNPE--FVVSLPCLKILKLENIFHGE 170

Query: 188 Q---MFQKLTNECPSLEDFEISACW----GLKNLCVSKAHKLKKLAIYTFYKDIGIVEIV 240
               + +KL + CP LED E+   +    G  +L   K  + + +        IG    V
Sbjct: 171 DGPLVVEKLISGCPVLEDLELIRPFDDNVGYGSLTAPKYSRNRDI--------IGDFLTV 222

Query: 241 VPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCE 300
           + S++  ++  S   M   + + +   P   +L      L  +   SS QL      SC 
Sbjct: 223 ISSVRHTIICYSTSKMLYSYSKQLGPIPQFHNLY----HLQARFSSSSLQLLPTFLESC- 277

Query: 301 NLKAIDTDTPNLLSFTFSYDFNP 323
                    PNL +    + F P
Sbjct: 278 ------PACPNLKNLIMEFPFEP 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1M0|FDL16_ARATH F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana GN=At2g26030 PE=2 SV=2

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 26/228 (11%)

Query: 8   DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDI 67
           DRI ELP  ++  ++SYL   +  +TS+LSKRW    +  P+L+          + + D 
Sbjct: 4   DRICELPDSLLTQVLSYLPTIDSVKTSVLSKRWEFLWLRVPVLD----------LKVSDF 53

Query: 68  SDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVL 127
            DE  + +F+D  L    K R R  +L+  +   D    A     W+   VD GI+ L  
Sbjct: 54  PDE-NYASFIDNFLEFNRKSRMRKFKLKYDEYTYDDDRLA----GWVVTTVDRGIQHL-- 106

Query: 128 MVHNMTQEDTVCI---LPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY 184
                  E  +C+   +PQ I+   ++ +L L    +E P     + L SLK + LE+V+
Sbjct: 107 --DAKGFETNMCVREFMPQNIYKCNTLVSLMLVTVGIENPE--FVVSLPSLKIMHLEDVW 162

Query: 185 INDQ--MFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTF 230
             D   + +K+ + CP LEDF +       NL V +  +++ L++ +F
Sbjct: 163 YYDDPLIMEKIISGCPVLEDFVLIRPIDFCNLDVLQFLRVRSLSLRSF 210

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M190|FBL49_ARATH Putative F-box/LRR-repeat protein At3g42770 OS=Arabidopsis thaliana GN=At3g42770 PE=4 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 21/242 (8%)

Query: 13  LPTFIIHHIMSYLSAKEIARTSILSKRW-CLFCISFPILEFDQCYFLGKAITLMDISD-E 70
           LP  ++  I+S+L  KE   TS+LSKRW  LF +S P L+FD    L       ++ + +
Sbjct: 4   LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLS-PNLDFDNSLLLQSKKRKWNMRNIQ 62

Query: 71  KKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVH 130
           K F+ FVD++L        +   L+  ++  DV G    +++WI  A+++G+ +L L + 
Sbjct: 63  KSFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVD-VNRWICNALEHGVSELHLRID 121

Query: 131 NMTQEDTVCILPQTIFSAKSMATLSLF--GCRMEQPSDTTTIRLDSLKKLTLENVYINDQ 188
              +    C LP  IF++  +  LSL    C    P     I L SLK L L++++    
Sbjct: 122 YTKR----CHLPSEIFTSTKLVKLSLVTQSCF---PVVPNCISLPSLKVLFLDSIWFEVP 174

Query: 189 MFQKLTNECPSLEDFEI---SACWGLKNLCVSKAHKLKKLAI-YT--FYKDIGIVEIVVP 242
            F      CP+LED  I       G+     SK   +K+L++ YT  ++ D G+     P
Sbjct: 175 QFLIFLTACPALEDLTIYQKPHSVGMPYHISSKT--IKRLSVTYTCGYFVDYGLKLFNTP 232

Query: 243 SL 244
           S+
Sbjct: 233 SV 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLA2|FDL34_ARATH Putative F-box/FBD/LRR-repeat protein At5g44950 OS=Arabidopsis thaliana GN=At5g44950 PE=4 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 24/204 (11%)

Query: 6   GMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLM 65
           G DRI+ELP  +++HI+ YL  +E  RTS+LS RW    +  P L+ +   F        
Sbjct: 2   GRDRISELPDGLLNHILMYLHIEESIRTSVLSSRWRKLWLKVPGLDVNVHDFPADGNLFE 61

Query: 66  DISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDL 125
            + D  KF+      L  F KL +      L   F+           WI   VD GI+ L
Sbjct: 62  SLMD--KFLEVNRGRLQNF-KLNYESNLYYLMDRFV----------PWIATVVDRGIQHL 108

Query: 126 VLMVHNMTQED----TVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLE 181
                ++T  D    T+  +P  I  +K++ +L L    ++ P     + L  LK + LE
Sbjct: 109 -----DVTATDCPPWTIDFMPANICKSKTLVSLKLVNVGLDTPK--FVVSLPCLKIMHLE 161

Query: 182 NVYINDQMFQKLTNECPSLEDFEI 205
           +++ +  + + L + CP LED  I
Sbjct: 162 DIFYSPLIAENLISGCPVLEDLTI 185

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 75.1 bits (183), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 32/243 (13%)

Query: 6   GMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLM 65
           G D I  +P  I+HHI+S++      RTS+LS+RW       P L+          ITL 
Sbjct: 25  GADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLD----------ITLK 74

Query: 66  DISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDL 125
             +  +   ++    +  F KL   +              + P +D WI  A+   +++L
Sbjct: 75  HGAMNQTLTSYTAPIITSF-KLVMDLNS-----------NTVPQVDSWIEFALSRNVQNL 122

Query: 126 VLMVHNMTQEDTVCILPQTIFSAKSM----ATLSLFGCRMEQPSDTTTIRLDSLKKLTLE 181
            + V + T   T    P   + + S+     TL  F         T T+   SL+ LTL 
Sbjct: 123 SVFVRDFTYSKTY-RFPDIFYLSSSLKLLDVTLDFFDM-----IPTCTVSWKSLRNLTLR 176

Query: 182 NVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVV 241
              I D+    + + CP LE   +  C  L+ L +SK+  L++L I   Y+  G V IV 
Sbjct: 177 FCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDINQQYRRTGPVAIVA 236

Query: 242 PSL 244
           P +
Sbjct: 237 PHI 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFU7|FBL90_ARATH Putative F-box/LRR-repeat protein At5g54820 OS=Arabidopsis thaliana GN=At5g54820 PE=4 SV=1

 Score = 74.7 bits (182), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 34/237 (14%)

Query: 8   DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDI 67
           DR++ LP  ++  I+S+L  KE  RTS+LSKRW   C+    L F +  ++   IT  + 
Sbjct: 7   DRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPDITDAEY 66

Query: 68  SDEKKFMAFVDASLFRFCKLR--FRMQELRLFQS----FLDVKGSAPLLDKWIGLAVDNG 121
           S    + +F       FC +     + + ++ +S    F  + G    +D  I  AV   
Sbjct: 67  SRIVAYRSF-------FCSVDKWVSITQHQVVESFEICFSHLVGFEDKIDALIEYAVSTR 119

Query: 122 IKDLVLMVHNMTQEDTVCI--------LPQTIFSAKSMATLSLFGCRMEQPS---DTTTI 170
           +K+LV+ + N +      I        LP++++S  ++ +L ++GC+ + PS   +   +
Sbjct: 120 VKNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFD-PSKFVNPVLL 178

Query: 171 RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAI 227
           R  S+  + LEN++        L ++ PSL+   I  CWG+     S A + ++L I
Sbjct: 179 RSLSIGWVRLENLH-------SLLSKSPSLQSLSIKNCWGVD--ITSMAGQFRELVI 226

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX54|FBL62_ARATH Putative F-box/LRR-repeat protein At3g59170 OS=Arabidopsis thaliana GN=At3g59170 PE=4 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/234 (29%), Positives = 105/234 (44%), Gaps = 41/234 (17%)

Query: 2   MYAKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKA 61
           M +   D I  LP  ++ HI+S+L+ KE A TS+LS+RW       P LEFD   +L + 
Sbjct: 1   MDSVSKDMINVLPDALLCHILSFLTTKEAASTSLLSRRWRYLLAFVPNLEFDDSVYLHRD 60

Query: 62  ITLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLD-------VKGSAPLLDK-- 112
             + +   EK F+ FV         L    +  +L  SF D       ++G++P LDK  
Sbjct: 61  KRVKNTLHEKGFVGFV---------LLVNNKRKKLSTSFPDFVDRILALQGNSP-LDKFS 110

Query: 113 -----------------WIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLS 155
                            WI   +  G+ DL L+V     E T   LP  IF ++++  L+
Sbjct: 111 LKMVDGHDPVDPDSVVPWIHKVLVRGVSDLHLVVD--MNEWTSDPLPSRIFLSETLVKLT 168

Query: 156 LFGCRMEQPSDTTTIRLDSLKKLTLENVYI--NDQMFQKLTNECPSLEDFEISA 207
           +   R     D   + L  LK L L++V    ND  F+KL + CP LE+  +  
Sbjct: 169 I-KIRDGPFIDVKHVHLPKLKTLYLQSVMFDENDIGFRKLLSGCPVLEELVLDG 221

Arabidopsis thaliana (taxid: 3702)

>sp|Q2V3N5|FB211_ARATH F-box protein At3g59000 OS=Arabidopsis thaliana GN=At3g59000 PE=1 SV=2

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 93/180 (51%), Gaps = 9/180 (5%)

Query: 7   MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMD 66
           MDR+  LP  ++ HI+S+L+ KE A TS+LSKRW       P L FD   FL       +
Sbjct: 1   MDRVGSLPDELLSHILSFLTTKEAALTSLLSKRWRYLIAFVPNLAFDDIVFLHPEEGKPE 60

Query: 67  ISD-EKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDL 125
             +  + FM FVD    R   L+     ++ F     +   +  +D WI   ++ G+ +L
Sbjct: 61  RDEIRQSFMDFVD----RVLALQAE-SPIKKFSLKCRIGVDSDRVDGWISNVLNRGVSEL 115

Query: 126 -VLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY 184
            +L++  MT ED+  + P+  F++K++  L + GC ++      +I L  LK L L++V+
Sbjct: 116 DLLIILGMTMEDSYRLSPKG-FASKTLVKLEI-GCGIDISWVAGSIFLPMLKTLVLDSVW 173

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL99|FDL36_ARATH F-box/FBD/LRR-repeat protein At5g44980 OS=Arabidopsis thaliana GN=At5g44980 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 29/252 (11%)

Query: 7   MDR--ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITL 64
           MDR  I+ELP  ++  I+  L  K+  +TS+LSKRW    ++ P LE     F     T 
Sbjct: 1   MDRDYISELPDSLLTQILLELRTKDSVKTSVLSKRWRNLWLNVPGLELFTLQF-----TY 55

Query: 65  MDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKD 124
            D   E+ F+ F+D    RF + + R +  +   +++D KG    L + IG  VD+G++ 
Sbjct: 56  PD--REEIFVRFMD----RFMEFKCRSRLKKFMITYVDCKGYRDRLMELIGTLVDHGLQH 109

Query: 125 LVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY 184
           L + +H     D V    Q I+ +K++ +L L    +E  +    + L  LK L LEN+ 
Sbjct: 110 LYVFMHTF---DRVDFKRQNIYKSKTLVSLKLHN--VELKNSDFVVSLPCLKILKLENIC 164

Query: 185 INDQ---MFQKLTNECPSLEDFEISACWGLKN-----LCVSKAHKLKKLAI-YTFYKDIG 235
             +    + +KL + C  LED E+   + ++      L    +  LK   + +  YKD  
Sbjct: 165 HGEDGPLVVEKLISGCSVLEDLELIRPFDIRTHKVLLLLRVSSQTLKSFTLHFAIYKDRT 224

Query: 236 --IVEIVVPSLQ 245
              VEI  P L+
Sbjct: 225 DFSVEIDAPRLK 236

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
224121624	528	predicted protein [Populus trichocarpa]	0.938	0.604	0.358	1e-48
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.9	0.652	0.292	8e-32
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.9	0.652	0.287	1e-30
449458245	575	PREDICTED: uncharacterized protein LOC10	0.855	0.506	0.302	1e-28
449476919	575	PREDICTED: uncharacterized protein LOC10	0.855	0.506	0.299	2e-28
255590973	337	conserved hypothetical protein [Ricinus	0.75	0.756	0.331	2e-28
356557323	833	PREDICTED: uncharacterized protein LOC10	0.961	0.392	0.306	4e-28
357503353	557	F-box/LRR-repeat protein [Medicago trunc	0.911	0.556	0.290	7e-26
297743071	552	unnamed protein product [Vitis vinifera]	0.926	0.570	0.324	1e-24
225442254	520	PREDICTED: putative F-box protein At3g44	0.873	0.571	0.331	2e-24

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 127/354 (35%), Positives = 193/354 (54%), Gaps = 35/354 (9%)

Query: 7   MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLM- 65
           MD I+  P  ++HHI+S+L  K++ RTSILSKRW L   ++PIL+F      G++   M 
Sbjct: 1   MDHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMY 60

Query: 66  --DISDE-----KKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAV 118
             + SDE      KFM +VD S+FRFCK +F MQ+ +LF    D++ S+ L DKW+   +
Sbjct: 61  SENASDEYRQMLTKFMNYVDTSIFRFCKYKFSMQKFKLFLVLPDLELSSHL-DKWVQKVI 119

Query: 119 DNGIK--DLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLK 176
           +NG K  D  + +           +P  IF+AKS+  L LFGC ++   ++  I+L SL+
Sbjct: 120 ENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNVKL-EESFCIKLHSLQ 178

Query: 177 KLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGI 236
           KL L+ V ++D + +++   CP LED  +  CWGLK + V +  +LKK  IY+       
Sbjct: 179 KLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPES 238

Query: 237 VEIVVPSLQ-----------------------QQLMLTSVWFMDEEFDRFISKFPLLEDL 273
           VEI  PSL+                       + L+L+  +  +      + KF +LE L
Sbjct: 239 VEIKSPSLESFHCSFTVRSVKPIVSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLESL 298

Query: 274 LLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTI 327
            +  C + +KVKISS +LK+L  +SCEN+  I+ +TPNLLS  +     P+  I
Sbjct: 299 RVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLI 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  144 bits (362), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 187/355 (52%), Gaps = 49/355 (13%)

Query: 7   MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMD 66
           MD I+ELP  I+ HI+S+LS K+I +T+ILSKRW    ++FP  EFD+ +F      +  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFF-----HIES 55

Query: 67  ISDEKKF--MAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKD 124
               K+F  + FV+ +L +   LR    + +L   F +   S  ++D+WI   +++G+++
Sbjct: 56  KLQNKRFHLINFVEQTLKQLKCLR----KFKLHTDFPE-PNSMVVVDRWIDYVLESGVQE 110

Query: 125 L--VLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLEN 182
           L  V+ V N  + +    LPQ +F+ +S+  L++  C++    D    +L S+K ++L  
Sbjct: 111 LEIVVTVENGKRYN----LPQRVFANQSLTVLTVGDCKLCPSLDG--YKLLSMKSVSLLG 164

Query: 183 VYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVP 242
           V+  D+  ++L + CP ++  ++ +C GL+NL + + ++L  + +     + G+ E    
Sbjct: 165 VFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQN---NSGLYEFGTK 221

Query: 243 SLQQQ-----------------------LMLTSVWFMDEEFDRFISKFPLLEDLLLRFCR 279
           ++  Q                       L L+ V   D+ F+R  S+FPLLE L L +C 
Sbjct: 222 AMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCH 281

Query: 280 LPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSM 334
           + E ++ISS+ LK      CE++  +D DTP L    FS D   + + ++NA ++
Sbjct: 282 MLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGD---VISFSLNAPAL 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 186/355 (52%), Gaps = 49/355 (13%)

Query: 7   MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMD 66
           MD I+ELP  I+ HI+S+LS K+I +T+ILSKRW    ++FP  EFD+ +F      +  
Sbjct: 1   MDLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFF-----HIES 55

Query: 67  ISDEKKF--MAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKD 124
               K+F  + FV+ +L +   LR    + +L   F +   S  ++D+WI   +++G+++
Sbjct: 56  KLQNKRFHLINFVEQTLKQLKCLR----KFKLHTDFPE-PNSMVVVDRWIDYVLESGVQE 110

Query: 125 L--VLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLEN 182
           L  V+ V N  + +    LPQ +F+ +S+  L++  C++    D    +L S+K ++L  
Sbjct: 111 LEIVVTVENGKRYN----LPQRVFANQSLTVLTVGDCKLCPSLD--GYKLLSMKSVSLLG 164

Query: 183 VYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVP 242
           V+  D+  ++L + CP ++  ++ +C GL++L + + ++L  + +     + G+ E    
Sbjct: 165 VFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQN---NSGLYEFGTK 221

Query: 243 SLQQQ-----------------------LMLTSVWFMDEEFDRFISKFPLLEDLLLRFCR 279
           ++  Q                       L L+ V   D+ F+R  S+FPLLE L L +C 
Sbjct: 222 AMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYCH 281

Query: 280 LPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSM 334
           + E ++ISS+ LK      CE++  +D D P L    FS D   + + ++NA ++
Sbjct: 282 MLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGD---VISFSLNAPAL 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458245|ref|XP_004146858.1| PREDICTED: uncharacterized protein LOC101214024 [Cucumis sativus]

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 166/327 (50%), Gaps = 36/327 (11%)

Query: 7   MDRITELPTFIIHHIMSYL-SAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLM 65
           +D I++LP   IHHI+S+L SAKE ARTSILSK+W     SF +L F++  +L   + L 
Sbjct: 53  VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVGLN 112

Query: 66  DISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGS-APLLDKWIGLAVDNGIKD 124
                +KF+  +D SL          Q L +++  L +       L +W+ +A +NG+ +
Sbjct: 113 SDKQRQKFIDSIDNSLQSHL-----TQNLGIYKLVLRITPELVSHLKRWVDMAGENGLGE 167

Query: 125 LVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY 184
           L + V    +    C +P  + S K+++ L L G      S    +  ++L+KL L  ++
Sbjct: 168 LDIHVETTRKR---CKVPLCMHSIKTLSGLRLQGLYW---SSFEALEFNNLQKLYLRRLH 221

Query: 185 INDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSL 244
           ++ Q+ QKL + CP L D  I  C GL NL +S + KL+++ +Y  +  +  VE+ VPSL
Sbjct: 222 VDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHF-LRRVELQVPSL 280

Query: 245 Q----------------------QQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPE 282
           +                      ++L L      +  F++ +  FP+LE L L  C   +
Sbjct: 281 KTFWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQ 340

Query: 283 KVKISSNQLKNLHFNSCENLKAIDTDT 309
            + I++ +L++L    C+ LK ID D+
Sbjct: 341 IIGIANVELQSLGLRCCKRLKHIDVDS 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476919|ref|XP_004154876.1| PREDICTED: uncharacterized protein LOC101224445 [Cucumis sativus]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 166/327 (50%), Gaps = 36/327 (11%)

Query: 7   MDRITELPTFIIHHIMSYL-SAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLM 65
           +D I++LP   IHHI+S+L SAKE ARTSILSK+W     SF +L F++  +L   + L 
Sbjct: 53  VDTISKLPESAIHHILSFLRSAKEAARTSILSKKWRDAWKSFSVLTFNERSYLKAEVGLN 112

Query: 66  DISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGS-APLLDKWIGLAVDNGIKD 124
                +KF+  +D SL          Q L +++  L +       L +W+ +A +NG+ +
Sbjct: 113 SDKQRQKFIDSIDNSLQSHL-----TQNLGIYKLVLRITPELVSHLKRWVDMAGENGLGE 167

Query: 125 LVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY 184
           L + V    +    C +P  + S K+++ L L G      S    +  ++L+KL L  ++
Sbjct: 168 LDIHVETTRKR---CKVPLCMHSIKTLSGLRLQGLYW---SSFEALEFNNLQKLYLRRLH 221

Query: 185 INDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSL 244
           ++ Q+ QKL + CP L D  I  C GL NL +S + KL+++ +Y  +  +  +E+ VPSL
Sbjct: 222 VDPQLIQKLVSTCPLLTDLRIIECRGLTNLKISGSQKLERVDLYQCHF-LRRIELQVPSL 280

Query: 245 Q----------------------QQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPE 282
           +                      ++L L      +  F++ +  FP+LE L L  C   +
Sbjct: 281 KTFWYCAKKSSCCKLNLESCTSLKRLTLEDPSMTENFFNKLLVSFPVLEKLNLSRCDKLQ 340

Query: 283 KVKISSNQLKNLHFNSCENLKAIDTDT 309
            + I++ +L++L    C+ LK ID D+
Sbjct: 341 IIGIANVELQSLGLRCCKRLKHIDVDS 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255590973|ref|XP_002535407.1| conserved hypothetical protein [Ricinus communis] gi|223523200|gb|EEF26976.1| conserved hypothetical protein [Ricinus communis]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 154/290 (53%), Gaps = 35/290 (12%)

Query: 5   KGMDR-------ITELPTFIIHHIMSYLS-AKEIARTSILSKRWCLFCISFPILEFDQCY 56
           K MDR       I++LP  +IHHI+S L   K+ ARTSILSKRW     S+ IL+FDQ  
Sbjct: 60  KAMDRRSDSIDLISQLPNHVIHHILSLLRCKKDAARTSILSKRWRAIWASYLILDFDQRK 119

Query: 57  FLGKAITLMDISDEKK-------------FMAFVDASLFRFCKLRFRMQELRLFQSFLDV 103
           F  +   +  +S + K             F AFV+ +L    +    +Q+ +L  +  +V
Sbjct: 120 FQKQEKKVRRLSSKSKKRKEVEINKKNEMFRAFVENTLRTHIEQDSGIQKFKLHLTSYNV 179

Query: 104 KGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQ 163
           + SA + D+WIG A  N IKDL L +   +++D    LPQT+F+A ++  L + GC++  
Sbjct: 180 ELSAHV-DQWIGFATTNNIKDLDLYI--PSKKDRCYNLPQTVFAASTITALRISGCKLRT 236

Query: 164 PSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLK 223
             D   I+L +L+KL    + ++ QM Q L   CP ++D  +  C GLK L +S ++KL 
Sbjct: 237 CID---IKLSNLQKLCFAKLRVDGQMIQNLMLSCPLIDDLRLIYCTGLKTLLLS-SNKLY 292

Query: 224 KLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL 273
           ++ I+ F   +  VE++ P+LQ      + W+  ++  R      + +DL
Sbjct: 293 RVDIH-FCHGLKNVEVLSPNLQ------TFWYHGKKSTRCKINLAMCKDL 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/359 (30%), Positives = 169/359 (47%), Gaps = 32/359 (8%)

Query: 7   MDRITELPTFIIHHIMSYL-SAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLM 65
           +DRI++ P  +IHHI+S+L +  +  RTS+LSKRW     S+ +L FD+  F  K I   
Sbjct: 159 VDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAK-IGHE 217

Query: 66  DISDEKK-FMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKD 124
           D S++   F  +V  SL        ++++L L  +  D+   AP L+ W+ +A+   IK+
Sbjct: 218 DSSNKGMMFRDYVSNSLLTSNAKNLQIRKLVLHMTSFDLLEDAPCLELWLNIAIYRNIKE 277

Query: 125 LVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY 184
           L L  H   +      LPQT+FS+K++  + L GC++        I+L  L+KL L  + 
Sbjct: 278 LDL--HVGIKNGECYTLPQTVFSSKTLTGIRLSGCKL---GTCNNIKLPYLQKLYLRKIP 332

Query: 185 INDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSL 244
           + +   Q L + C S+ED  I  C GLK+L VS   +LK+  I+   + +  VEI  P+L
Sbjct: 333 LVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQ-LKKVEISAPNL 391

Query: 245 Q----------------------QQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPE 282
                                  ++L L       +  +   S FPLLE L L       
Sbjct: 392 DTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPLLEKLDLSMSNNKS 451

Query: 283 KVKISSN-QLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPIPTIAMNALSMETLFFV 340
           +  I SN  L+      C+ L  +  + PNLLSF    +  P   I    L+   L FV
Sbjct: 452 RFIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPWVEIHPFGLTQAKLSFV 510

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357503353|ref|XP_003621965.1| F-box/LRR-repeat protein [Medicago truncatula] gi|357503387|ref|XP_003621982.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496980|gb|AES78183.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355496997|gb|AES78200.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  124 bits (310), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 168/362 (46%), Gaps = 52/362 (14%)

Query: 5   KGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGK-AIT 63
           K  DR++ LP  I+HHI+S L  K+ ARTS+LSK W     +FPIL      F G   ++
Sbjct: 16  KQEDRLSILPKIILHHILSRLPEKDAARTSVLSKAWADTWFTFPILSISDNKFTGWFPLS 75

Query: 64  LMDIS-DEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGI 122
           + D+    KKF+ +V  +L RFC     ++E ++  +  ++   +  +D W+  A  +G+
Sbjct: 76  IDDVKRKRKKFIDYVTRTLSRFCDQGLAIKECKIILNRFELHYMSKHVDLWLKSASGSGV 135

Query: 123 KDLVLMV----HNMTQEDTVC-ILPQTIFSAKSMATLSL-FGCRMEQPSDTTTIRLDSLK 176
           + + L +    + + +    C +LP  +  AKS+  + L  G R++Q     +I+  SL+
Sbjct: 136 EVVELCLPCGPNYIEEGHGKCYVLPTGVIEAKSLTKVVLKGGIRVDQAFMNQSIKFFSLR 195

Query: 177 KLTLENVYINDQ-MFQKLTNECPSLEDFEISAC------WGLKNLCVSKAHKLKKLAIYT 229
            L+L  V + D+   + L + CP +E   +  C       G+K +     H L KL    
Sbjct: 196 VLSLWIVLLEDEHAIEHLISCCPFIEHITLKHCSVLSPGGGVKLMKSLSMHGLPKLKTVD 255

Query: 230 FYKDIGIVEIVVPSLQ-------------------------------QQLMLTSVWFMDE 258
            +  I  V I VPSL+                               +   +T  WF++ 
Sbjct: 256 VH-GIQEVYIDVPSLEYLYYCHDVLNAPYKIHFDSCRNLKGLDLFSLEGNTITDKWFLE- 313

Query: 259 EFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFS 318
                 SKFP LE L    C + E + ISS QLK L  + C N+K ++ D PNLLS  + 
Sbjct: 314 ----LFSKFPFLERLKFVKCTMSETINISSVQLKVLELSGCHNMKEVNIDAPNLLSCEYI 369

Query: 319 YD 320
            D
Sbjct: 370 ID 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (299), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/358 (32%), Positives = 175/358 (48%), Gaps = 43/358 (12%)

Query: 8   DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFC--ISFPILEFDQCYFLGKAITLM 65
           DRI+ LP  I+  I+S L  KEIARTS+LSK W       S  +L F    F        
Sbjct: 38  DRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHSRRKNF 97

Query: 66  DISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIK-- 123
           D+S    F+  +D+SL R  +    +  L+L     D++ S  L+D WI  A++  +K  
Sbjct: 98  DVSS---FINAIDSSL-RLRQKDVSLARLQLRLHLNDIE-SESLIDSWIDAALERKVKEL 152

Query: 124 DLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENV 183
           DL L+  ++ +      LP  IFS  ++  LSL  CR+E   D   + L +L+KL L  +
Sbjct: 153 DLYLLPRSIPEPYG---LPAKIFSTTTITVLSLEQCRLEICGD---VDLPALRKLCLRKI 206

Query: 184 YINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPS 243
             ++Q  ++L + CP +ED +I +C  LK L VS    L +L +   Y ++  +EI  PS
Sbjct: 207 LCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCY-NLRRIEIDAPS 265

Query: 244 LQ------QQLMLTSVWFMDEEF-------DRFI---------SKFPLLEDLLLRFCRLP 281
           LQ      Q+ +L  V +   EF       DR I         S  P LE L +   RL 
Sbjct: 266 LQYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDSTRL- 324

Query: 282 EKVKISSNQLKNLHFNSCENLK--AIDTDTPNLLSFTFSYDFNPIPTI--AMNALSME 335
           ++++IS +QLK L     E  +   +  D PNL SFT+     P+ ++  +MN  S+ 
Sbjct: 325 QRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMNTSSLR 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  119 bits (298), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/338 (33%), Positives = 166/338 (49%), Gaps = 41/338 (12%)

Query: 8   DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFC--ISFPILEFDQCYFLGKAITLM 65
           DRI+ LP  I+  I+S L  KEIARTS+LSK W       S  +L F    F        
Sbjct: 6   DRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDFFHSRRKNF 65

Query: 66  DISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIK-- 123
           D+S    F+  +D+SL R  +    +  L+L     D++ S  L+D WI  A++  +K  
Sbjct: 66  DVSS---FINAIDSSL-RLRQKDVSLARLQLRLHLNDIE-SESLIDSWIDAALERKVKEL 120

Query: 124 DLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENV 183
           DL L+  ++ +      LP  IFS  ++  LSL  CR+E   D   + L +L+KL L  +
Sbjct: 121 DLYLLPRSIPEPYG---LPAKIFSTTTITVLSLEQCRLEICGD---VDLPALRKLCLRKI 174

Query: 184 YINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPS 243
             ++Q  ++L + CP +ED +I +C  LK L VS    L +L +   Y ++  +EI  PS
Sbjct: 175 LCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCY-NLRRIEIDAPS 233

Query: 244 LQ------QQLMLTSVWFMDEEF-------DRFI---------SKFPLLEDLLLRFCRLP 281
           LQ      Q+ +L  V +   EF       DR I         S  P LE L +   RL 
Sbjct: 234 LQYFMYDHQRSLLCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLEIDSTRL- 292

Query: 282 EKVKISSNQLKNLHFNSCENLK--AIDTDTPNLLSFTF 317
           ++++IS +QLK L     E  +   +  D PNL SFT+
Sbjct: 293 QRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTY 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2077695	491	AT3G59000 "AT3G59000" [Arabido	0.670	0.464	0.305	8.2e-17
TAIR|locus:2085013	532	AT3G42770 "AT3G42770" [Arabido	0.655	0.419	0.304	1.4e-15
TAIR|locus:2081172	484	AT3G59210 "AT3G59210" [Arabido	0.602	0.423	0.310	7.8e-15
TAIR|locus:2155367	435	AT5G44980 [Arabidopsis thalian	0.655	0.512	0.297	4.2e-14
TAIR|locus:2081247	464	AT3G59160 "AT3G59160" [Arabido	0.617	0.452	0.295	5.8e-14
TAIR|locus:2155312	377	AT5G44940 "AT5G44940" [Arabido	0.541	0.488	0.288	1.4e-13
TAIR|locus:2160205	472	AT5G54820 [Arabidopsis thalian	0.614	0.442	0.264	2.6e-13
TAIR|locus:2081242	504	AT3G59240 "AT3G59240" [Arabido	0.65	0.438	0.287	4.4e-13
TAIR|locus:2099119	482	AT3G58930 "AT3G58930" [Arabido	0.617	0.435	0.316	5.7e-13
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.447	0.333	0.282	6.4e-13

TAIR|locus:2077695 AT3G59000 "AT3G59000" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.2e-17, P = 8.2e-17
 Identities = 74/242 (30%), Positives = 122/242 (50%)

Query:     7 MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISF-PILEFDQCYFLGKAITLM 65
             MDR+  LP  ++ HI+S+L+ KE A TS+LSKRW  + I+F P L FD   FL       
Sbjct:     1 MDRVGSLPDELLSHILSFLTTKEAALTSLLSKRW-RYLIAFVPNLAFDDIVFLHPEEGKP 59

Query:    66 DISD-EKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKD 124
             +  +  + FM FVD    R   L+     ++ F     +   +  +D WI   ++ G+ +
Sbjct:    60 ERDEIRQSFMDFVD----RVLALQAE-SPIKKFSLKCRIGVDSDRVDGWISNVLNRGVSE 114

Query:   125 L-VLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENV 183
             L +L++  MT ED+  + P+  F++K++  L + GC ++      +I L  LK L L++V
Sbjct:   115 LDLLIILGMTMEDSYRLSPKG-FASKTLVKLEI-GCGIDISWVAGSIFLPMLKTLVLDSV 172

Query:   184 YINDQMFQKLTNECPSLEDFE-ISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVP 242
             +     F+ L    P+LE+   +   W   ++ +S A  LK L I +    +G      P
Sbjct:   173 WFYVDKFETLLLALPALEELVLVDVNWLDSDVTISNA-SLKTLTIDSD-GHLGTFSFDTP 230

Query:   243 SL 244
             SL
Sbjct:   231 SL 232

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2085013 AT3G42770 "AT3G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 73/240 (30%), Positives = 120/240 (50%)

Query:    13 LPTFIIHHIMSYLSAKEIARTSILSKRW-CLFCISFPILEFDQCYFLGKAITLMDISD-E 70
             LP  ++  I+S+L  KE   TS+LSKRW  LF +S P L+FD    L       ++ + +
Sbjct:     4 LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLS-PNLDFDNSLLLQSKKRKWNMRNIQ 62

Query:    71 KKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVH 130
             K F+ FVD++L        +   L+  ++  DV G   + ++WI  A+++G+ +L L + 
Sbjct:    63 KSFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDV-NRWICNALEHGVSELHLRI- 120

Query:   131 NMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMF 190
             + T+    C LP  IF++  +  LSL   +   P     I L SLK L L++++     F
Sbjct:   121 DYTKR---CHLPSEIFTSTKLVKLSLV-TQSCFPVVPNCISLPSLKVLFLDSIWFEVPQF 176

Query:   191 QKLTNECPSLEDFEISA---CWGLKNLCVSKAHKLKKLAI-YT--FYKDIGIVEIVVPSL 244
                   CP+LED  I       G+     SK   +K+L++ YT  ++ D G+     PS+
Sbjct:   177 LIFLTACPALEDLTIYQKPHSVGMPYHISSKT--IKRLSVTYTCGYFVDYGLKLFNTPSV 234

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2081172 AT3G59210 "AT3G59210" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
 Identities = 71/229 (31%), Positives = 108/229 (47%)

Query:     8 DRITELPTFIIHHIMSYLSAKEIARTSILSKRW-CLFCISFPILEFDQCYFLGKAITLMD 66
             D I  LP  ++  I+S LS KE A TS+LSKRW  LF +  P L+FD    L   + + D
Sbjct:     7 DIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFAL-VPNLDFDVLPSLHPEVAMQD 65

Query:    67 ISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDK----WIGLAVDNGI 122
               D+  F+ FVD    R  KLR +   +  F     +K    + D+    WI   + +G+
Sbjct:    66 -QDQTSFIDFVD----RVLKLRGK-DHINKFS----LKCGDGIEDEDVFPWILNTLRHGV 115

Query:   123 KDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLEN 182
              DL L V        V  LP  +F++K++  L + G +         + L  LK L L++
Sbjct:   116 SDLSLHV----SPSLVYWLPSKVFASKTLVRLKI-GPKDGPRVKLRNVCLPKLKTLNLDS 170

Query:   183 VYINDQM--FQKLTNECPSLEDFEI-SACWGLKNLCVSKAHKLKKLAIY 228
             V   +    F KL + CP LE+  + +  W   + C   +  LK+L +Y
Sbjct:   171 VVFEEGKIGFAKLLSGCPVLEELSLLNLAWDRWDSCSVSSKILKRLTLY 219

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155367 AT5G44980 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
 Identities = 75/252 (29%), Positives = 121/252 (48%)

Query:     7 MDR--ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITL 64
             MDR  I+ELP  ++  I+  L  K+  +TS+LSKRW    ++ P LE     F     T 
Sbjct:     1 MDRDYISELPDSLLTQILLELRTKDSVKTSVLSKRWRNLWLNVPGLELFTLQF-----TY 55

Query:    65 MDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKD 124
              D   E+ F+ F+D    RF + + R +  +   +++D KG    L + IG  VD+G++ 
Sbjct:    56 PD--REEIFVRFMD----RFMEFKCRSRLKKFMITYVDCKGYRDRLMELIGTLVDHGLQH 109

Query:   125 LVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY 184
             L + +H     D V    Q I+ +K++ +L L    ++  SD   + L  LK L LEN+ 
Sbjct:   110 LYVFMHTF---DRVDFKRQNIYKSKTLVSLKLHNVELKN-SDFV-VSLPCLKILKLENIC 164

Query:   185 INDQ---MFQKLTNECPSLEDFEISACWGLKN-----LCVSKAHKLKKLAI-YTFYKDIG 235
               +    + +KL + C  LED E+   + ++      L    +  LK   + +  YKD  
Sbjct:   165 HGEDGPLVVEKLISGCSVLEDLELIRPFDIRTHKVLLLLRVSSQTLKSFTLHFAIYKDRT 224

Query:   236 --IVEIVVPSLQ 245
                VEI  P L+
Sbjct:   225 DFSVEIDAPRLK 236

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2081247 AT3G59160 "AT3G59160" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
 Identities = 71/240 (29%), Positives = 111/240 (46%)

Query:     8 DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDI 67
             D I +LP  ++ H++SYL+ KE A TS+LS+RW       P LEFD   +L +   + + 
Sbjct:    13 DMINDLPDALLCHVLSYLTTKEAASTSLLSRRWRYLLAFVPNLEFDDSAYLHRDKRVKNP 72

Query:    68 SDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDK--------------- 112
               EK  + FV     +  KL     +       LD++G++PL DK               
Sbjct:    73 LHEKGLVGFVLTVDDKRKKLSTSFPDF--VDRILDLQGNSPL-DKFSLKMVDDHDPVDPD 129

Query:   113 ----WIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTT 168
                 WI   +  G+ DL L++ +M +  +   LP  IF  +++  L+L   R   P D  
Sbjct:   130 CVAPWIHKVLVRGVSDLHLVI-DMNEWTS---LPAKIFLTETLVKLTL-KIRDGPPIDVK 184

Query:   169 TIRLDSLKKLTLENVYINDQM--FQKLTNECPSLEDFEISACWG-LKNLCVSKAHKLKKL 225
              + L  LK L LE+V  +++   F KL + CP LE+  +   W  +   C      LK+L
Sbjct:   185 HVHLPKLKTLHLESVMFDEEDIGFSKLLSGCPELEELVLHHIWSCVWTSCSVSVATLKRL 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155312 AT5G44940 "AT5G44940" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 58/201 (28%), Positives = 99/201 (49%)

Query:     8 DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDI 67
             D I+E P  ++  I+  L  K+  +TS+LSKRW    ++ P L      F      +   
Sbjct:     5 DYISEFPDCLLTQILLNLPTKDSVKTSVLSKRWRNLWLNVPGLRLRTFDF-----PVFPY 59

Query:    68 SDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVL 127
               E+ F+ F+D   F   K R R+Q+  +  ++ +  G    L + IG  VD GI+ L +
Sbjct:    60 PYEEGFVRFMDR--FMEFKCRSRLQKFMI--TYFEHNGYRDRLMELIGTLVDRGIQHLYV 115

Query:   128 MVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIND 187
              +H   + D    + Q I+ +K++ +L L+   ++ P     + L  LK L LEN++  +
Sbjct:   116 YMHTCNRVD---FIRQNIYKSKTLVSLKLYNVELKNPE--FVVSLPCLKILKLENIFHGE 170

Query:   188 Q---MFQKLTNECPSLEDFEI 205
                 + +KL + CP LED E+
Sbjct:   171 DGPLVVEKLISGCPVLEDLEL 191

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160205 AT5G54820 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 61/231 (26%), Positives = 113/231 (48%)

Query:     8 DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDI 67
             DR++ LP  ++  I+S+L  KE  RTS+LSKRW   C+    L F +  ++   IT  + 
Sbjct:     7 DRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPDITDAEY 66

Query:    68 SDEKKFMAFVDASLFRFCKLRFRMQELRLFQ-SFLDVKGSAPLLDKWIGLAVDNGIKDLV 126
             S    + +F   S+ ++  +  + Q +  F+  F  + G    +D  I  AV   +K+LV
Sbjct:    67 SRIVAYRSFF-CSVDKWVSIT-QHQVVESFEICFSHLVGFEDKIDALIEYAVSTRVKNLV 124

Query:   127 LMVHN--------MTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKK- 177
             + + N        ++    +  LP++++S  ++ +L ++GC+ +       + L SL   
Sbjct:   125 VDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFDPSKFVNPVLLRSLSIG 184

Query:   178 -LTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAI 227
              + LEN++        L ++ PSL+   I  CWG+     S A + ++L I
Sbjct:   185 WVRLENLH-------SLLSKSPSLQSLSIKNCWGVD--ITSMAGQFRELVI 226

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2081242 AT3G59240 "AT3G59240" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 4.4e-13, Sum P(2) = 4.4e-13
 Identities = 71/247 (28%), Positives = 120/247 (48%)

Query:     8 DRITELPTFIIHHIMSYLSAKEIARTSILSKRW-CLFCISFPILEFDQCYFLGKAITLMD 66
             D I++LP  +I H++S++  KE A TS+LS++W  LF  + PIL+FD   ++   +  M+
Sbjct:     8 DIISDLPEALICHLLSFVPTKEAALTSLLSEKWRYLFAFA-PILDFDDSVWMQSPLVYMN 66

Query:    67 ISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKG-SAPLLDKWIGLAVDNGIKDL 125
                 +KFM FVD    R   L+     +R   S     G     + +WI   ++ G+ DL
Sbjct:    67 -EVHRKFMDFVD----RVLGLQGNSTLVRF--SLNCRNGIDRECIFRWISNVIERGVSDL 119

Query:   126 VLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPS--DTTTIRLDSLKKLTLENV 183
              L  + ++       +P ++F +KS+  L +   R E  +  D   + L  LK L L ++
Sbjct:   120 DLGGNFVSNRS----MPSSVFVSKSLVKLRI---RTENCTIIDLEDVFLPKLKTLDLSSI 172

Query:   184 YIND--QMFQKLTNECPSLEDFEISACW--GLKNLCVSKAHKLKKLAIYT--FYKDIGIV 237
             +  D      KL + C  LED  +S  W  G  N  +S +  LK+L ++   + +  G +
Sbjct:   173 WFRDGDTCLLKLISGCQVLEDLTMSDLWWDGYWNRSMS-SKTLKRLTVHCSDWDRSPGSI 231

Query:   238 EIVVPSL 244
                 P+L
Sbjct:   232 SFDTPNL 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099119 AT3G58930 "AT3G58930" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
 Identities = 73/231 (31%), Positives = 113/231 (48%)

Query:     7 MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFL----GKAI 62
             MDR++ LP  +  HI+S+L AK IA TS+LSK W       PIL+ D   FL    GKA 
Sbjct:     1 MDRVSNLPDGVRGHILSFLPAKHIALTSVLSKSWLNLWKLIPILDIDDSEFLHPEEGKAE 60

Query:    63 TLMDISDEKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAP-LLDKWIGLAVDNG 121
              L +I   + F+ FVD    R   L+      R   S   + G  P  +++WI   +  G
Sbjct:    61 RL-EI--RQSFVDFVD----RVLALQDDSPIDRF--SLKCITGIHPDHVNRWICNVLQRG 111

Query:   122 IKDLVLMV---HNMTQEDTVCILPQTIFSAKSMATLSLFGCR-MEQPSDTTTIRLDSLKK 177
             + DL L +   +  TQED   +LPQ +F +K++  L +   R ++         L  LK 
Sbjct:   112 VSDLDLFIDFSYEDTQEDED-MLPQEMFVSKTLVKLKIRNDRCVDWWCGKGGTSLPMLKS 170

Query:   178 LTLENVYINDQMFQKLTNECPSLEDFEISAC-WGLKNLCVSKAHKLKKLAI 227
             L +++  I     ++  +  P LE+  +++  W   +  VS A  L+KL+I
Sbjct:   171 LYIDSDLILWGKMKRFLSSFPVLEELRMASMEWKESHETVSSA-SLRKLSI 220

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
 Identities = 44/156 (28%), Positives = 73/156 (46%)

Query:    97 FQSFLDVKGSA-PLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLS 155
             F+  +D+  +  P +D WI  A+   +++L + V + T   T    P   + + S+  L 
Sbjct:    93 FKLVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTYSKTYRF-PDIFYLSSSLKLLD 151

Query:   156 LFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLC 215
             +     +    T T+   SL+ LTL    I D+    + + CP LE   +  C  L+ L 
Sbjct:   152 VTLDFFDM-IPTCTVSWKSLRNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLD 210

Query:   216 VSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLT 251
             +SK+  L++L I   Y+  G V IV P +   L LT
Sbjct:   211 LSKSPNLRRLDINQQYRRTGPVAIVAPHIYY-LRLT 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1460040 hypothetical protein (528 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
pfam12937	47	pfam12937, F-box-like, F-box-like	0.002
pfam00646	48	pfam00646, F-box, F-box domain	0.003

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 10 ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFC 44
          +++LP  I+  I SYL  +++ R +++ +RW    
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELA 35

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 8  DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEF 52
            + +LP  ++  I+S L  K++ R S++SKRW     S  + + 
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKK 45

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.91
KOG4341	483	consensus F-box protein containing LRR [General fu	99.77
KOG4341	483	consensus F-box protein containing LRR [General fu	99.17
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.15
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.06
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.02
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.96
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.77
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.71
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.67
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.56
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.49
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.39
KOG1947	482	consensus Leucine rich repeat proteins, some prote	98.29
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.08
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.08
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.95
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.62
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.59
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.3
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.27
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.23
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.21
PRK15386	426	type III secretion protein GogB; Provisional	97.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.1
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.06
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.02
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.96
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.89
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.37
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	96.35
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.26
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.11
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.92
PRK15386	426	type III secretion protein GogB; Provisional	95.87
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.77
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.62
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.62
PLN03150	623	hypothetical protein; Provisional	95.57
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.45
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.42
PLN03150	623	hypothetical protein; Provisional	95.25
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.08
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	94.42
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.42
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.15
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	93.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.66
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	93.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	93.22
KOG0472	565	consensus Leucine-rich repeat protein [Function un	93.02
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.24
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	88.76
PF13013	109	F-box-like_2: F-box-like domain	88.17
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	87.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	87.65
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	85.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	82.78
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.86
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	80.15

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3.2e-26  Score=189.70  Aligned_cols=276  Identities=21%  Similarity=0.294  Sum_probs=190.3

Q ss_pred             ccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhcccceEEEeccccccccccccCcchhhHHHHHHHHHHHhhhccC
Q 040471            9 RITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDEKKFMAFVDASLFRFCKLR   88 (340)
Q Consensus         9 ~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~   88 (340)
                      .|+.|||||++.||+.|+.+|+++.+.|||||+++.+            +...|+..|...+.-..+...+.+ +     
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~------------de~lW~~lDl~~r~i~p~~l~~l~-~-----  158 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLAS------------DESLWQTLDLTGRNIHPDVLGRLL-S-----  158 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccc------------cccceeeeccCCCccChhHHHHHH-h-----
Confidence            3899999999999999999999999999999999876            556677677665544455556655 1     


Q ss_pred             cccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcc
Q 040471           89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTT  168 (340)
Q Consensus        89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~  168 (340)
                      ..+.-|++--..    .....+..... .+...+|+++++....    ....+...+..|.+|+.|.|.|.+++++.-..
T Consensus       159 rgV~v~Rlar~~----~~~prlae~~~-~frsRlq~lDLS~s~i----t~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~  229 (419)
T KOG2120|consen  159 RGVIVFRLARSF----MDQPRLAEHFS-PFRSRLQHLDLSNSVI----TVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT  229 (419)
T ss_pred             CCeEEEEcchhh----hcCchhhhhhh-hhhhhhHHhhcchhhe----eHHHHHHHHHHHHhhhhccccccccCcHHHHH
Confidence            244444443111    11111222111 2334799999988776    56777777888999999999999998865555


Q ss_pred             cccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccc---cccc-CCCCceEEecccccc-----cceee
Q 040471          169 TIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNL---CVSK-AHKLKKLAIYTFYKD-----IGIVE  238 (340)
Q Consensus       169 ~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~---~~~~-~~~L~~L~i~~~~~~-----~~~~~  238 (340)
                      .+.-.+|+.|+++.|.. +..+++.++++|..|.+|+++.|...+..   .+.+ -++|+.|+++||...     +..+.
T Consensus       230 iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~  309 (419)
T KOG2120|consen  230 IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV  309 (419)
T ss_pred             HhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH
Confidence            67789999999999988 99999999999999999999999764332   1111 289999999999722     22233


Q ss_pred             ecCcCcceEeccCce-eeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCcc---hhhhccCCC
Q 040471          239 IVVPSLQQQLMLTSV-WFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCEN---LKAIDTDTP  310 (340)
Q Consensus       239 ~~~p~L~~ll~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~---l~~~~~~~p  310 (340)
                      -.+|+|..| +++.+ .++++.+.. +-.++.|++|.++.|-.+.....    +.|.|.+|++.||..   ++-+...+|
T Consensus       310 ~rcp~l~~L-DLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~  387 (419)
T KOG2120|consen  310 RRCPNLVHL-DLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLS  387 (419)
T ss_pred             HhCCceeee-ccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCc
Confidence            367777776 55544 355544443 44567777777777766433211    246777777776643   333444455


Q ss_pred             Cee
Q 040471          311 NLL  313 (340)
Q Consensus       311 ~L~  313 (340)
                      +|.
T Consensus       388 ~lk  390 (419)
T KOG2120|consen  388 HLK  390 (419)
T ss_pred             ccc
Confidence            554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.77  E-value=1.1e-20  Score=163.51  Aligned_cols=259  Identities=17%  Similarity=0.248  Sum_probs=155.5

Q ss_pred             CCCchhHHHHHhcCCchhhhhhhhcccccchhhhcccceEEEeccccccccccccCcchh-hHHH-HHHHHHHHhhhccC
Q 040471           11 TELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISDE-KKFM-AFVDASLFRFCKLR   88 (340)
Q Consensus        11 ~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~~~l~~~~~~~   88 (340)
                      -.||.|++++|||+|+.+.+.+++.+|+-|..+..            ++..|+++|..+. +... ..|+.++       
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~Al------------D~~~~q~idL~t~~rDv~g~VV~~~~-------  133 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLAL------------DGSCWQHIDLFTFQRDVDGGVVENMI-------  133 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh------------ccccceeeehhcchhcCCCcceehHh-------
Confidence            35999999999999999999999999999998755            6666666654321 1100 1122222       


Q ss_pred             cccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeecee-CCCCC-C
Q 040471           89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCR-MEQPS-D  166 (340)
Q Consensus        89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~-~  166 (340)
                                                . .....+|+|.++++...   ++..+......|+++++|.+.+|. +++.. .
T Consensus       134 --------------------------~-Rcgg~lk~LSlrG~r~v---~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~  183 (483)
T KOG4341|consen  134 --------------------------S-RCGGFLKELSLRGCRAV---GDSSLRTFASNCPNIEHLALYGCKKITDSSLL  183 (483)
T ss_pred             --------------------------h-hhccccccccccccccC---CcchhhHHhhhCCchhhhhhhcceeccHHHHH
Confidence                                      1 11135566666665542   445555555567788888777775 33322 2


Q ss_pred             cccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccc----ccccCCCCceEEecccc-cccc---ee
Q 040471          167 TTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNL----CVSKAHKLKKLAIYTFY-KDIG---IV  237 (340)
Q Consensus       167 ~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~----~~~~~~~L~~L~i~~~~-~~~~---~~  237 (340)
                      .....|++|+.|++..|.. ++..++++..+||+|++|+++.|..+..-    ..++|..++.+...||. .+.+   .+
T Consensus       184 sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~  263 (483)
T KOG4341|consen  184 SLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKA  263 (483)
T ss_pred             HHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHH
Confidence            2344678888888888666 77777878888888888888888665441    22345556666556665 1111   11


Q ss_pred             eecCcCcceEe-------------------------ccCcee-eccHHHHHHHcCCCcccEEecccCCCCccccc-----
Q 040471          238 EIVVPSLQQQL-------------------------MLTSVW-FMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI-----  286 (340)
Q Consensus       238 ~~~~p~L~~ll-------------------------~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~-----  286 (340)
                      .-+++.+.++.                         ...++. +++..+..+..++++|+.|.+..|..+++.+.     
T Consensus       264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR  343 (483)
T ss_pred             hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence            12223333321                         333332 55556666666666666666666666544433     


Q ss_pred             ccccccEEEeecCcch-----hhhccCCCCeeEEEEe
Q 040471          287 SSNQLKNLHFNSCENL-----KAIDTDTPNLLSFTFS  318 (340)
Q Consensus       287 ~~~~L~~L~l~~c~~l-----~~~~~~~p~L~~L~~~  318 (340)
                      .++.|+.+++.+|.-.     ..+...||.|+.+.++
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lsls  380 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLS  380 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChh
Confidence            2566666666666543     3344556777776666

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.17  E-value=9.9e-12  Score=108.57  Aligned_cols=175  Identities=18%  Similarity=0.280  Sum_probs=95.6

Q ss_pred             CCCccEEEeecee-CCC-CCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccccc----ccCC
Q 040471          148 AKSMATLSLFGCR-MEQ-PSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLCV----SKAH  220 (340)
Q Consensus       148 ~~~L~~L~L~~~~-~~~-~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~----~~~~  220 (340)
                      |.-+..+++..|. +.+ ..+.....+..|+.|...++.. ++..+.++..+|++|+.|.+.+|..+.+..+    .+|+
T Consensus       267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~  346 (483)
T KOG4341|consen  267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP  346 (483)
T ss_pred             ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence            4445555555553 222 1222334566666666666665 6666666666677777777777666554432    2456


Q ss_pred             CCceEEeccccc----ccceeeecCcCcceEeccCcee-eccHHHHHHH---cCCCcccEEecccCCCCcccccc----c
Q 040471          221 KLKKLAIYTFYK----DIGIVEIVVPSLQQQLMLTSVW-FMDEEFDRFI---SKFPLLEDLLLRFCRLPEKVKIS----S  288 (340)
Q Consensus       221 ~L~~L~i~~~~~----~~~~~~~~~p~L~~ll~l~~~~-i~~~~~~~l~---~~~~~L~~L~l~~c~~i~~~~~~----~  288 (340)
                      .|+.+++.+|..    .+..+..++|.|+.+ .++++. |+|++...+-   .+...|+.+.+++|+.+++....    |
T Consensus       347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l-slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c  425 (483)
T KOG4341|consen  347 HLERLDLEECGLITDGTLASLSRNCPRLRVL-SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC  425 (483)
T ss_pred             hhhhhcccccceehhhhHhhhccCCchhccC-ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence            666666666651    133344456666665 555554 5555443332   23345555666666665554332    5


Q ss_pred             ccccEEEeecCcch-----hhhccCCCCeeEEEEeccCCC
Q 040471          289 NQLKNLHFNSCENL-----KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       289 ~~L~~L~l~~c~~l-----~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      ++||++++.+|.++     ..+....|+++...+.+.+.+
T Consensus       426 ~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~  465 (483)
T KOG4341|consen  426 RNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTP  465 (483)
T ss_pred             cccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCC
Confidence            66666666666554     344445566666665554333

>PLN03210 Resistant to P

Probab=99.15  E-value=2.3e-10  Score=118.04  Aligned_cols=180  Identities=18%  Similarity=0.207  Sum_probs=98.6

Q ss_pred             cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccccc-cc
Q 040471          140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCV-SK  218 (340)
Q Consensus       140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~-~~  218 (340)
                      .++..+..+++|+.|+|+++..-. ..+....+++|++|+|.+|..- ..+..-+..+++|+.|++++|..+..+.. ..
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~  702 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLK-EIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGIN  702 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcC-cCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCC
Confidence            344445556667777776653211 1123445677777777776531 11222345677788888887776655422 14


Q ss_pred             CCCCceEEecccccccceee----------e------------cCcCcceE-----------------------------
Q 040471          219 AHKLKKLAIYTFYKDIGIVE----------I------------VVPSLQQQ-----------------------------  247 (340)
Q Consensus       219 ~~~L~~L~i~~~~~~~~~~~----------~------------~~p~L~~l-----------------------------  247 (340)
                      +++|+.|++++|. ....+.          +            .+++|+.|                             
T Consensus       703 l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~  781 (1153)
T PLN03210        703 LKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT  781 (1153)
T ss_pred             CCCCCEEeCCCCC-CccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence            5677777777764 111110          0            11222222                             


Q ss_pred             -eccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc--cccccEEEeecCcchhhhccCCCCeeEEEEeccCCC
Q 040471          248 -LMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS--SNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       248 -l~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~--~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~  323 (340)
                       +.+.++.... .+..-+.++++|++|++++|..++.++..  +++|++|++++|..+..+....++|+.|++.++...
T Consensus       782 ~L~Ls~n~~l~-~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~  859 (1153)
T PLN03210        782 RLFLSDIPSLV-ELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIE  859 (1153)
T ss_pred             heeCCCCCCcc-ccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCc
Confidence             0111111000 12223566788888888888777666543  578888888888777655555566777777665443

syringae 6; Provisional

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.06  E-value=9.4e-11  Score=72.65  Aligned_cols=36  Identities=33%  Similarity=0.670  Sum_probs=31.9

Q ss_pred             cCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471           10 ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus        10 i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      |+.||+||+.+||+||+.+|+.+++.|||+|+++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHC
Confidence            678999999999999999999999999999998764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.02  E-value=9.6e-10  Score=112.51  Aligned_cols=91  Identities=20%  Similarity=0.113  Sum_probs=40.0

Q ss_pred             cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccc
Q 040471          140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVS  217 (340)
Q Consensus       140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~  217 (340)
                      .+|..+..+++|+.|++++|.+....+....++++|++|++.++.++... ...+..+++|++|++++|.....+  .+.
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  233 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIG  233 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHh
Confidence            34444445555555555555443222223344555555555555432111 111234455555555544322111  223


Q ss_pred             cCCCCceEEecccc
Q 040471          218 KAHKLKKLAIYTFY  231 (340)
Q Consensus       218 ~~~~L~~L~i~~~~  231 (340)
                      .+++|++|+++++.
T Consensus       234 ~l~~L~~L~L~~n~  247 (968)
T PLN00113        234 GLTSLNHLDLVYNN  247 (968)
T ss_pred             cCCCCCEEECcCce
Confidence            34555555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.01  E-value=1.2e-09  Score=111.89  Aligned_cols=173  Identities=17%  Similarity=0.131  Sum_probs=93.5

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..     ...+|..+..+++|++|++++|.+....+.....+++|+.|++.++.++..... .+..+++
T Consensus       164 ~~L~~L~L~~n~l-----~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~  237 (968)
T PLN00113        164 SSLKVLDLGGNVL-----VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY-EIGGLTS  237 (968)
T ss_pred             CCCCEEECccCcc-----cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh-hHhcCCC
Confidence            5777777765543     235677777788888888888876543444556678888888887766332222 2456778


Q ss_pred             CcEEEecccCCCccc--ccccCCCCceEEecccc-cc-cceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEec
Q 040471          200 LEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY-KD-IGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLL  275 (340)
Q Consensus       200 L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~-~~-~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l  275 (340)
                      |++|++++|.....+  .+..+++|+.|+++++. .+ ........++|+.+ .+.++.+++. +...+.++++|++|++
T Consensus       238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~Ls~n~l~~~-~p~~~~~l~~L~~L~l  315 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL-DLSDNSLSGE-IPELVIQLQNLEILHL  315 (968)
T ss_pred             CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE-ECcCCeeccC-CChhHcCCCCCcEEEC
Confidence            888888776432211  34456677777776654 11 11111234455554 4444443322 1122344555555555


Q ss_pred             ccCCCCccccc---ccccccEEEeecCc
Q 040471          276 RFCRLPEKVKI---SSNQLKNLHFNSCE  300 (340)
Q Consensus       276 ~~c~~i~~~~~---~~~~L~~L~l~~c~  300 (340)
                      ++|...+..+.   .+++|+.|++.+|.
T Consensus       316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        316 FSNNFTGKIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             CCCccCCcCChhHhcCCCCCEEECcCCC
Confidence            55443222211   13455555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.96  E-value=1.7e-09  Score=96.43  Aligned_cols=203  Identities=17%  Similarity=0.134  Sum_probs=123.7

Q ss_pred             cCccEEEEEeecCCC-CCccccCCccccCCCCccEEEeeceeCCCCCCcccccC---cccceEecceEeeChHHHHHH--
Q 040471          120 NGIKDLVLMVHNMTQ-EDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRL---DSLKKLTLENVYINDQMFQKL--  193 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~-~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~~~~~l~~l--  193 (340)
                      ++++++++..+.... ......++..+..+++|++|++++|.+..........+   ++|+.|++.++.+++.++..+  
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            458888776543310 01122334445557789999998887653222222223   448999998888865554443  


Q ss_pred             -HhcC-CCCcEEEecccCCCc----cc--ccccCCCCceEEecccccc---cceee---ecCcCcceEeccCceeeccHH
Q 040471          194 -TNEC-PSLEDFEISACWGLK----NL--CVSKAHKLKKLAIYTFYKD---IGIVE---IVVPSLQQQLMLTSVWFMDEE  259 (340)
Q Consensus       194 -~~~~-p~L~~L~l~~c~~~~----~~--~~~~~~~L~~L~i~~~~~~---~~~~~---~~~p~L~~ll~l~~~~i~~~~  259 (340)
                       ...+ ++|++|++++|.-..    .+  .+..+++|+.|+++++.-.   ...+.   ...++|+.+ .+.++.+++..
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L-~L~~n~i~~~~  209 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL-DLNNNGLTDEG  209 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEE-eccCCccChHH
Confidence             3344 888999998885331    11  2334578888888887611   11111   134577777 77777777654


Q ss_pred             ---HHHHHcCCCcccEEecccCCCCccccc-----c----cccccEEEeecCcch-------hhhccCCCCeeEEEEecc
Q 040471          260 ---FDRFISKFPLLEDLLLRFCRLPEKVKI-----S----SNQLKNLHFNSCENL-------KAIDTDTPNLLSFTFSYD  320 (340)
Q Consensus       260 ---~~~l~~~~~~L~~L~l~~c~~i~~~~~-----~----~~~L~~L~l~~c~~l-------~~~~~~~p~L~~L~~~~~  320 (340)
                         +...+..+++|++|++++|. +++.++     .    .+.|++|++.+|.--       .......++|+.++++++
T Consensus       210 ~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         210 ASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             HHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence               34456778899999999875 443211     1    268999999888531       122233478899998887


Q ss_pred             CCCC
Q 040471          321 FNPI  324 (340)
Q Consensus       321 ~~~~  324 (340)
                      ....
T Consensus       289 ~l~~  292 (319)
T cd00116         289 KFGE  292 (319)
T ss_pred             CCcH
Confidence            6653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=7e-10  Score=93.24  Aligned_cols=151  Identities=21%  Similarity=0.232  Sum_probs=104.9

Q ss_pred             HHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc--ccccCcccceEecceEee--ChHHHH
Q 040471          116 LAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT--TTIRLDSLKKLTLENVYI--NDQMFQ  191 (340)
Q Consensus       116 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~--~~~~l~  191 (340)
                      .|.+.+++++++++|.+.   ....+.-.+.+|+.|..|+|+.|....+.-.  ...--++|+.|+++++..  .+.++.
T Consensus       230 iAkN~~L~~lnlsm~sG~---t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~  306 (419)
T KOG2120|consen  230 IAKNSNLVRLNLSMCSGF---TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS  306 (419)
T ss_pred             Hhccccceeecccccccc---chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH
Confidence            455689999999998874   4455566677899999999999975332211  223468999999999976  677899


Q ss_pred             HHHhcCCCCcEEEecccCCCccc---ccccCCCCceEEeccccccc--ceeee-cCcCcceEeccCceeeccHHHHHHHc
Q 040471          192 KLTNECPSLEDFEISACWGLKNL---CVSKAHKLKKLAIYTFYKDI--GIVEI-VVPSLQQQLMLTSVWFMDEEFDRFIS  265 (340)
Q Consensus       192 ~l~~~~p~L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~~~~--~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~  265 (340)
                      .+...||+|.+|+++.|..+.+-   .+.+++.|++|.++.|+...  ..+++ ..|.|.+| ++.++ ++|..+.-+..
T Consensus       307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL-dv~g~-vsdt~mel~~e  384 (419)
T KOG2120|consen  307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL-DVFGC-VSDTTMELLKE  384 (419)
T ss_pred             HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEE-Eeccc-cCchHHHHHHH
Confidence            99999999999999999877653   34468999999999999222  22233 35666665 22222 33444444444


Q ss_pred             CCCccc
Q 040471          266 KFPLLE  271 (340)
Q Consensus       266 ~~~~L~  271 (340)
                      .+|+|+
T Consensus       385 ~~~~lk  390 (419)
T KOG2120|consen  385 MLSHLK  390 (419)
T ss_pred             hCcccc
Confidence            455443

>PLN03210 Resistant to P

Probab=98.77  E-value=3.8e-08  Score=101.85  Aligned_cols=40  Identities=28%  Similarity=0.486  Sum_probs=28.6

Q ss_pred             HcCCCcccEEecccCCCCcccccc---cccccEEEeecCcchh
Q 040471          264 ISKFPLLEDLLLRFCRLPEKVKIS---SNQLKNLHFNSCENLK  303 (340)
Q Consensus       264 ~~~~~~L~~L~l~~c~~i~~~~~~---~~~L~~L~l~~c~~l~  303 (340)
                      +..+++|+.|++++|..+..++..   +++|+.+++.+|.++.
T Consensus       865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence            466788888888888777766554   4667777778887764

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.72  E-value=8.3e-09  Score=94.28  Aligned_cols=103  Identities=19%  Similarity=0.239  Sum_probs=64.5

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccC-CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFS-AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      +.++.|+++.+..      .++|..-+. -.++++|+|+++.+.+.....+..+.+|.+|.|+.++++.=. ...+++.|
T Consensus       149 ~alrslDLSrN~i------s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~  221 (873)
T KOG4194|consen  149 PALRSLDLSRNLI------SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLP  221 (873)
T ss_pred             hhhhhhhhhhchh------hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcc
Confidence            5677788766654      445444444 467999999988876644456667788888888888873211 33456678


Q ss_pred             CCcEEEecccCC--CcccccccCCCCceEEecc
Q 040471          199 SLEDFEISACWG--LKNLCVSKAHKLKKLAIYT  229 (340)
Q Consensus       199 ~L~~L~l~~c~~--~~~~~~~~~~~L~~L~i~~  229 (340)
                      +|+.|++..+..  +..+.++++++|+.|.+..
T Consensus       222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr  254 (873)
T KOG4194|consen  222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR  254 (873)
T ss_pred             hhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence            888888776532  2233444445555554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.71  E-value=1.9e-08  Score=89.60  Aligned_cols=195  Identities=16%  Similarity=0.037  Sum_probs=121.5

Q ss_pred             HcCccEEEEEeecCCCCCccccCCccccCC---CCccEEEeeceeCCCCCCc----ccccC-cccceEecceEeeChHH-
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSA---KSMATLSLFGCRMEQPSDT----TTIRL-DSLKKLTLENVYINDQM-  189 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~~~~~----~~~~~-~~L~~L~L~~~~~~~~~-  189 (340)
                      .+++++|++..+...     ...+..+...   ++|++|++++|.+......    ....+ ++|+.|++.++.++... 
T Consensus        80 ~~~L~~L~l~~~~~~-----~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          80 GCGLQELDLSDNALG-----PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             cCceeEEEccCCCCC-----hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            368888888665441     1122222222   5599999998876531111    22345 88899999999885333 


Q ss_pred             --HHHHHhcCCCCcEEEecccCCCc----cc--ccccCCCCceEEecccccc---cc---eeeecCcCcceEeccCceee
Q 040471          190 --FQKLTNECPSLEDFEISACWGLK----NL--CVSKAHKLKKLAIYTFYKD---IG---IVEIVVPSLQQQLMLTSVWF  255 (340)
Q Consensus       190 --l~~l~~~~p~L~~L~l~~c~~~~----~~--~~~~~~~L~~L~i~~~~~~---~~---~~~~~~p~L~~ll~l~~~~i  255 (340)
                        +...+..+++|++|++++|.--.    .+  .+..+++|++|++++|.-.   ..   ...-..|+|+.+ .+.++.+
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L-~ls~n~l  233 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL-NLGDNNL  233 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE-ecCCCcC
Confidence              33345667889999998874321    11  1223468999999887611   11   112246778888 8888888


Q ss_pred             ccHHHHHHHcC----CCcccEEecccCCCCcc--------cccccccccEEEeecCcch-------h-hhccCCCCeeEE
Q 040471          256 MDEEFDRFISK----FPLLEDLLLRFCRLPEK--------VKISSNQLKNLHFNSCENL-------K-AIDTDTPNLLSF  315 (340)
Q Consensus       256 ~~~~~~~l~~~----~~~L~~L~l~~c~~i~~--------~~~~~~~L~~L~l~~c~~l-------~-~~~~~~p~L~~L  315 (340)
                      ++..+..+...    .+.|++|++++|. +++        ....+++|+.++++++.--       . .+....++|+.+
T Consensus       234 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~  312 (319)
T cd00116         234 TDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL  312 (319)
T ss_pred             chHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence            88766665544    4799999999875 332        1122478999999876542       2 222233788888


Q ss_pred             EEecc
Q 040471          316 TFSYD  320 (340)
Q Consensus       316 ~~~~~  320 (340)
                      ++.++
T Consensus       313 ~~~~~  317 (319)
T cd00116         313 WVKDD  317 (319)
T ss_pred             ccCCC
Confidence            87664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.67  E-value=5.1e-09  Score=65.18  Aligned_cols=37  Identities=38%  Similarity=0.718  Sum_probs=31.8

Q ss_pred             ccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471            9 RITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus         9 ~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      +|++||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~   38 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD   38 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence            4788999999999999999999999999999999866

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.2e-08  Score=90.12  Aligned_cols=109  Identities=20%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc-ccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT-TTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      +++++|+++.+-..   ....+.......++|+.|+|+.+.+..+... ....++.||+|.+.+|.++...+..++..||
T Consensus       146 ~~v~~LdLS~NL~~---nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFH---NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             CcceeecchhhhHH---hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            46666666543321   1223333444567888888887765442221 2235788888888888888888888888888


Q ss_pred             CCcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471          199 SLEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~  231 (340)
                      +|+.|.+.++..+..-  .-.-+..|+.|+++++.
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            8888888887543211  11124678888888766

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.49  E-value=6e-08  Score=58.04  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=31.4

Q ss_pred             CchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471           13 LPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus        13 LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      ||+|++.+||++|+.+|+.+++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=1e-07  Score=84.33  Aligned_cols=174  Identities=20%  Similarity=0.155  Sum_probs=115.4

Q ss_pred             CCCCccEEEeeceeCCCCCC-cccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCC---cccccccCCC
Q 040471          147 SAKSMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGL---KNLCVSKAHK  221 (340)
Q Consensus       147 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~---~~~~~~~~~~  221 (340)
                      +.++|+...|.++.+..+.. .....|++++.|+|+.+-+ ....+..++..+|+|+.|+++.+.-.   .......+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            35678888888877655332 2445799999999999888 77888899999999999999876432   1111224688


Q ss_pred             CceEEecccc---cccceeeecCcCcceEeccCcee-eccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccE
Q 040471          222 LKKLAIYTFY---KDIGIVEIVVPSLQQQLMLTSVW-FMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKN  293 (340)
Q Consensus       222 L~~L~i~~~~---~~~~~~~~~~p~L~~ll~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~  293 (340)
                      |+.|.++.|.   .....+...+|.|+.| .+.+.. +......  ..-+..|++|+|+++..++....    .+|.|+.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L-~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVL-YLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHh-hhhcccccceecch--hhhhhHHhhccccCCcccccccccccccccchhh
Confidence            9999999987   3445556678888887 444432 1111111  11235688889988776654322    2688888


Q ss_pred             EEeecCcch---------hhhccCCCCeeEEEEeccCCC
Q 040471          294 LHFNSCENL---------KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       294 L~l~~c~~l---------~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      |++..|.--         .......|+|++|++..+...
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            888766532         122334589999999886553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.39  E-value=1.5e-07  Score=88.72  Aligned_cols=109  Identities=23%  Similarity=0.291  Sum_probs=69.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeece-eC--CCC--CCcccccCcccceEecceEe-eChHHHHHH
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGC-RM--EQP--SDTTTIRLDSLKKLTLENVY-INDQMFQKL  193 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~--~~~--~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l  193 (340)
                      ++++++.+..+...   .+..+-.....|++|+.|.+++| ..  ..+  .......+++|+.|++..+. +++.++..+
T Consensus       188 ~~L~~l~l~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKI---TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             chhhHhhhcccccC---ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            56777776555431   12224444556788888888763 21  111  11233456888888888887 488888888


Q ss_pred             HhcCCCCcEEEecccCCCccccc----ccCCCCceEEecccc
Q 040471          194 TNECPSLEDFEISACWGLKNLCV----SKAHKLKKLAIYTFY  231 (340)
Q Consensus       194 ~~~~p~L~~L~l~~c~~~~~~~~----~~~~~L~~L~i~~~~  231 (340)
                      +..||+|+.|.+.+|..+++.++    .+|+.|++|++.+|.
T Consensus       265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            88888888888777876554432    346778888888776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=98.29  E-value=4.6e-07  Score=85.43  Aligned_cols=129  Identities=23%  Similarity=0.323  Sum_probs=87.8

Q ss_pred             cCcccceEecceEee-ChHHHHHHHhcCCCCcEEEeccc-CCCccc------ccccCCCCceEEecccc----cccceee
Q 040471          171 RLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISAC-WGLKNL------CVSKAHKLKKLAIYTFY----KDIGIVE  238 (340)
Q Consensus       171 ~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c-~~~~~~------~~~~~~~L~~L~i~~~~----~~~~~~~  238 (340)
                      .+++|+.|.+.++.. ++.++..+...||+|++|++++| ......      ....|++|+.|++..|.    .++..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            478888888888766 66667777888888888888873 222111      12346778888887776    2223333


Q ss_pred             ecCcCcceEeccCcee-eccHHHHHHHcCCCcccEEecccCCCCccc-----ccccccccEEEeecCc
Q 040471          239 IVVPSLQQQLMLTSVW-FMDEEFDRFISKFPLLEDLLLRFCRLPEKV-----KISSNQLKNLHFNSCE  300 (340)
Q Consensus       239 ~~~p~L~~ll~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~-----~~~~~~L~~L~l~~c~  300 (340)
                      ..+|+|+.+. +.++. ++++++..+...|++|++|++++|..+++.     ...|++|+.|.+..+.
T Consensus       266 ~~c~~L~~L~-l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  266 SRCPNLETLS-LSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             hhCCCcceEc-cCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence            3477777774 66665 888888888888999999999988886543     3336777776654443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.26  E-value=6e-08  Score=88.80  Aligned_cols=13  Identities=31%  Similarity=0.534  Sum_probs=5.6

Q ss_pred             cCcccceEecceE
Q 040471          171 RLDSLKKLTLENV  183 (340)
Q Consensus       171 ~~~~L~~L~L~~~  183 (340)
                      .+.++++|+|..+
T Consensus       267 ~l~kme~l~L~~N  279 (873)
T KOG4194|consen  267 GLEKMEHLNLETN  279 (873)
T ss_pred             eecccceeecccc
Confidence            3444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.23  E-value=2.1e-06  Score=68.71  Aligned_cols=101  Identities=21%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             CccEEEEEeecCCCCCccccCCcccc-CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQTIF-SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ++++|++..+..      ..+. .+. .+.+|+.|++++|.+..  ......++.|++|+++++.++.-. +.+...+|+
T Consensus        20 ~~~~L~L~~n~I------~~Ie-~L~~~l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~   89 (175)
T PF14580_consen   20 KLRELNLRGNQI------STIE-NLGATLDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-C-HHHHHH-TT
T ss_pred             cccccccccccc------cccc-chhhhhcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccc-cchHHhCCc
Confidence            568888877655      2232 233 46789999999998765  234567899999999999883210 233456899


Q ss_pred             CcEEEecccCC--Cccc-ccccCCCCceEEecccc
Q 040471          200 LEDFEISACWG--LKNL-CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       200 L~~L~l~~c~~--~~~~-~~~~~~~L~~L~i~~~~  231 (340)
                      |++|.++++.-  +..+ .+..+|+|+.|.+.+++
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            99999987633  3333 34568999999998877

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.13  E-value=5.6e-07  Score=72.05  Aligned_cols=78  Identities=19%  Similarity=0.193  Sum_probs=15.5

Q ss_pred             CCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccc--cc-ccCCCCc
Q 040471          148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNL--CV-SKAHKLK  223 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~-~~~~~L~  223 (340)
                      +.+++.|+|.|+.+..-. .....+.+|+.|+++++.+ .-++    +..++.|++|.+++..-. .+  .+ ..+|+|+
T Consensus        18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccccccc-chhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            445666666666554310 1122456666666666655 2222    223555666655554221 11  11 1345555


Q ss_pred             eEEecccc
Q 040471          224 KLAIYTFY  231 (340)
Q Consensus       224 ~L~i~~~~  231 (340)
                      +|.++++.
T Consensus        92 ~L~L~~N~   99 (175)
T PF14580_consen   92 ELYLSNNK   99 (175)
T ss_dssp             EEE-TTS-
T ss_pred             EEECcCCc
Confidence            55555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.08  E-value=2.5e-06  Score=73.67  Aligned_cols=226  Identities=16%  Similarity=0.113  Sum_probs=104.9

Q ss_pred             cccceEEEEEeccCcCCChhhHHHHHHHHHH--cCccEEEEEeecCCCCCccccCCcc-------ccCCCCccEEEeece
Q 040471           89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVD--NGIKDLVLMVHNMTQEDTVCILPQT-------IFSAKSMATLSLFGC  159 (340)
Q Consensus        89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~--~~l~~L~l~~~~~~~~~~~~~l~~~-------~~~~~~L~~L~L~~~  159 (340)
                      ..+++++++-.     .-.....+|+.....  +.+++.+++--.  .++.-.++|..       +..|+.|++|+||.+
T Consensus        30 ~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~f--tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   30 DSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMF--TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             CceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhh--cCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            45666666422     122356778776554  455555552211  11122334433       334666777777666


Q ss_pred             eCCCCCCcc----cccCcccceEecceEeeChHHHHH------------HHhcCCCCcEEEecccCCC----cc--cccc
Q 040471          160 RMEQPSDTT----TIRLDSLKKLTLENVYINDQMFQK------------LTNECPSLEDFEISACWGL----KN--LCVS  217 (340)
Q Consensus       160 ~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~l~~------------l~~~~p~L~~L~l~~c~~~----~~--~~~~  217 (340)
                      .++...++.    ...+.+|+.|.|.+|.+...+=..            .+..-|+|+.+....+.--    +.  ..+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            654433221    224566666666666552222111            1223345555544433210    00  1223


Q ss_pred             cCCCCceEEeccccccccee------eecCcCcceEeccCceeeccH---HHHHHHcCCCcccEEecccCCCC-------
Q 040471          218 KAHKLKKLAIYTFYKDIGIV------EIVVPSLQQQLMLTSVWFMDE---EFDRFISKFPLLEDLLLRFCRLP-------  281 (340)
Q Consensus       218 ~~~~L~~L~i~~~~~~~~~~------~~~~p~L~~ll~l~~~~i~~~---~~~~l~~~~~~L~~L~l~~c~~i-------  281 (340)
                      .+|.|+.+++..+......+      ..++|+|+.| ++..+.++.+   .+...++.+|.|++|.++.|-.-       
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevL-dl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVL-DLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceee-ecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            34666666665544222222      1245666665 5555554433   23344555566666666665431       


Q ss_pred             -cccccccccccEEEeecCcch----hhh---ccCCCCeeEEEEeccCC
Q 040471          282 -EKVKISSNQLKNLHFNSCENL----KAI---DTDTPNLLSFTFSYDFN  322 (340)
Q Consensus       282 -~~~~~~~~~L~~L~l~~c~~l----~~~---~~~~p~L~~L~~~~~~~  322 (340)
                       ..+....|+|+.|.+.+|.--    ..+   ...-|.|..|.++|+..
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             111222466666666665432    000   01136666666666555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.08  E-value=1.7e-05  Score=77.77  Aligned_cols=12  Identities=17%  Similarity=0.169  Sum_probs=7.4

Q ss_pred             CCCceEEecccc
Q 040471          220 HKLKKLAIYTFY  231 (340)
Q Consensus       220 ~~L~~L~i~~~~  231 (340)
                      ++|+.|+++++.
T Consensus       302 ~~L~~LdLS~N~  313 (788)
T PRK15387        302 PGLQELSVSDNQ  313 (788)
T ss_pred             cccceeECCCCc
Confidence            566666666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.01  E-value=2.3e-05  Score=76.76  Aligned_cols=180  Identities=16%  Similarity=0.129  Sum_probs=104.3

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+-..|++..+.      ...+|..+.  ++|+.|.+.++.+..    .....++|++|+++++.++.  +   -...++
T Consensus       201 ~~~~~LdLs~~~------LtsLP~~l~--~~L~~L~L~~N~Lt~----LP~lp~~Lk~LdLs~N~Lts--L---P~lp~s  263 (788)
T PRK15387        201 NGNAVLNVGESG------LTTLPDCLP--AHITTLVIPDNNLTS----LPALPPELRTLEVSGNQLTS--L---PVLPPG  263 (788)
T ss_pred             CCCcEEEcCCCC------CCcCCcchh--cCCCEEEccCCcCCC----CCCCCCCCcEEEecCCccCc--c---cCcccc
Confidence            345566665443      356777664  479999999987764    12246899999999987631  1   123578


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccccccceeeecCcCcceEeccCceeecc---------------HHHHHHH
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMD---------------EEFDRFI  264 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~---------------~~~~~l~  264 (340)
                      |++|++.++. +..+.- ..++|+.|.+.++.  +..+....|+|+.| +++++.++.               +.+..+.
T Consensus       264 L~~L~Ls~N~-L~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~L-dLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        264 LLELSIFSNP-LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQEL-SVSDNQLASLPALPSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             cceeeccCCc-hhhhhh-chhhcCEEECcCCc--ccccccccccccee-ECCCCccccCCCCcccccccccccCcccccc
Confidence            9999998874 332211 13578889888775  22233334667776 444444332               1111111


Q ss_pred             cCCCcccEEecccCCCCcccccccccccEEEeecCcchhhhccCCCCeeEEEEeccCCC
Q 040471          265 SKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       265 ~~~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      ...++|++|++++|. ++.++...++|+.|.+.++. +..+....++|+.|++.++...
T Consensus       339 ~lp~~Lq~LdLS~N~-Ls~LP~lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt  395 (788)
T PRK15387        339 TLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLT  395 (788)
T ss_pred             ccccccceEecCCCc-cCCCCCCCcccceehhhccc-cccCcccccccceEEecCCccc
Confidence            112357777777543 55554445566666665532 3334333457788888776544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.00  E-value=4.2e-06  Score=81.33  Aligned_cols=126  Identities=16%  Similarity=0.215  Sum_probs=80.8

Q ss_pred             CCccEEEeecee-CCCCCC-cccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEE
Q 040471          149 KSMATLSLFGCR-MEQPSD-TTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLA  226 (340)
Q Consensus       149 ~~L~~L~L~~~~-~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~  226 (340)
                      .+|++|+++|.. +...+. ....-||+|+.|.+.+..+..+.+..+..++|+|..|+++++..-.-.++.++++|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            578888888854 333222 234468999999999998866668888899999999999987432223566677777777


Q ss_pred             ecccccccceeeecCcCcceEeccCceeecc-HHHHHHHcCCCcccEEecccCCCCccc---------ccccccccEEEe
Q 040471          227 IYTFYKDIGIVEIVVPSLQQQLMLTSVWFMD-EEFDRFISKFPLLEDLLLRFCRLPEKV---------KISSNQLKNLHF  296 (340)
Q Consensus       227 i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~c~~i~~~---------~~~~~~L~~L~l  296 (340)
                      +.+-.                       +.. ..+.+ +-++.+|+.||+|.-+.....         +...|+||.|+.
T Consensus       202 mrnLe-----------------------~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  202 MRNLE-----------------------FESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC  257 (699)
T ss_pred             ccCCC-----------------------CCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence            76443                       221 22333 234677777777754442221         222467777776


Q ss_pred             ec
Q 040471          297 NS  298 (340)
Q Consensus       297 ~~  298 (340)
                      ++
T Consensus       258 Sg  259 (699)
T KOG3665|consen  258 SG  259 (699)
T ss_pred             CC
Confidence            64

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.98  E-value=2.1e-07  Score=86.07  Aligned_cols=60  Identities=18%  Similarity=0.227  Sum_probs=32.8

Q ss_pred             CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI  185 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  185 (340)
                      .++.+.++.+.-    ....+|..++..+.|+.|+|+.+.+... +.....-.++-.|+|+++.+
T Consensus        79 ~LRsv~~R~N~L----KnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~I  138 (1255)
T KOG0444|consen   79 RLRSVIVRDNNL----KNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNI  138 (1255)
T ss_pred             hhHHHhhhcccc----ccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCcc
Confidence            444444433333    4456777777777777777777654320 11223335566666666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.95  E-value=5.8e-06  Score=71.46  Aligned_cols=179  Identities=16%  Similarity=0.128  Sum_probs=118.8

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc-------------ccccCcccceEecceEee-
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT-------------TTIRLDSLKKLTLENVYI-  185 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-------------~~~~~~~L~~L~L~~~~~-  185 (340)
                      +.++.|+|+-+-. ...+...+...+.+|.+|++|.|.+|-+++....             .+..-+.|+++...+++. 
T Consensus        92 ~~L~~ldLSDNA~-G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle  170 (382)
T KOG1909|consen   92 PKLQKLDLSDNAF-GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE  170 (382)
T ss_pred             CceeEeecccccc-CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence            4788888854432 1123344455567799999999999987552211             123458899999999988 


Q ss_pred             C--hHHHHHHHhcCCCCcEEEecccCC----Ccc--cccccCCCCceEEecccccc---cceeee---cCcCcceEeccC
Q 040471          186 N--DQMFQKLTNECPSLEDFEISACWG----LKN--LCVSKAHKLKKLAIYTFYKD---IGIVEI---VVPSLQQQLMLT  251 (340)
Q Consensus       186 ~--~~~l~~l~~~~p~L~~L~l~~c~~----~~~--~~~~~~~~L~~L~i~~~~~~---~~~~~~---~~p~L~~ll~l~  251 (340)
                      +  -..+...+..+|.|+++.+.....    ++.  ..+..||+|+.|++..+...   -..+..   ..|+|+.+ .+.
T Consensus       171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El-~l~  249 (382)
T KOG1909|consen  171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL-NLG  249 (382)
T ss_pred             cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee-ccc
Confidence            2  344566678899999999988743    211  13456899999999987511   111222   34456665 888


Q ss_pred             ceeeccHHH----HHHHcCCCcccEEecccCCCCcccccc--------cccccEEEeecCcc
Q 040471          252 SVWFMDEEF----DRFISKFPLLEDLLLRFCRLPEKVKIS--------SNQLKNLHFNSCEN  301 (340)
Q Consensus       252 ~~~i~~~~~----~~l~~~~~~L~~L~l~~c~~i~~~~~~--------~~~L~~L~l~~c~~  301 (340)
                      +|-+.+.+-    ..+-...|+|+.|.+.+|. |+..+..        -|.|+.|++.+|..
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            888776532    3344668999999999876 3322111        58999999998864

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.68  E-value=0.00014  Score=71.53  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=32.9

Q ss_pred             CCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEec
Q 040471          149 KSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIY  228 (340)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~  228 (340)
                      ++|+.|++++|.+.. . +. .-.++|+.|+|+++.+..- -..+   ..+|+.|+++++ .+..+.-.-.++|+.|+++
T Consensus       220 ~nL~~L~Ls~N~Lts-L-P~-~l~~~L~~L~Ls~N~L~~L-P~~l---~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls  291 (754)
T PRK15370        220 GNIKTLYANSNQLTS-I-PA-TLPDTIQEMELSINRITEL-PERL---PSALQSLDLFHN-KISCLPENLPEELRYLSVY  291 (754)
T ss_pred             cCCCEEECCCCcccc-C-Ch-hhhccccEEECcCCccCcC-ChhH---hCCCCEEECcCC-ccCccccccCCCCcEEECC
Confidence            356666666554432 1 10 1123566666665554210 0011   135666666643 2322211112466666666


Q ss_pred             ccc
Q 040471          229 TFY  231 (340)
Q Consensus       229 ~~~  231 (340)
                      ++.
T Consensus       292 ~N~  294 (754)
T PRK15370        292 DNS  294 (754)
T ss_pred             CCc
Confidence            654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.62  E-value=4.9e-06  Score=80.42  Aligned_cols=125  Identities=20%  Similarity=0.210  Sum_probs=71.8

Q ss_pred             CcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc--CCCcccccccCCCCceEEecccc-cccceeeecCcCcceEe
Q 040471          172 LDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC--WGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQL  248 (340)
Q Consensus       172 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c--~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll  248 (340)
                      .+.|+.|.+.+++++|+.+.. +.+.++|+.|+++++  ..+....+.+++.|+.|.++|+. ..+......++.|+.| 
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL-  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTL-  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhh-hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHH-
Confidence            455666666666666655544 456777777777776  33444455566777777777765 2222222245555555 


Q ss_pred             ccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc----cccccEEEeecCcch
Q 040471          249 MLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCENL  302 (340)
Q Consensus       249 ~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~~l  302 (340)
                      ...+..+..  +. -+...|.|+.+|++ |..++...+.    .|+||+|+++|..++
T Consensus       436 ~ahsN~l~~--fP-e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  436 RAHSNQLLS--FP-ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hhcCCceee--ch-hhhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence            333322211  11 13456888888888 4555544333    378888888887754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.59  E-value=1.7e-06  Score=80.25  Aligned_cols=39  Identities=28%  Similarity=0.284  Sum_probs=24.4

Q ss_pred             HcCCCcccEEecccCCCCc-ccccc-cccccEEEeecCcch
Q 040471          264 ISKFPLLEDLLLRFCRLPE-KVKIS-SNQLKNLHFNSCENL  302 (340)
Q Consensus       264 ~~~~~~L~~L~l~~c~~i~-~~~~~-~~~L~~L~l~~c~~l  302 (340)
                      +..|++|+.|.++++..|+ ..++. .+.|+.|++...+++
T Consensus       335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCc
Confidence            4557777777777555443 11222 477788888877776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.54  E-value=5.9e-05  Score=74.20  Aligned_cols=74  Identities=18%  Similarity=0.170  Sum_probs=39.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..      ..+|..+.  ++|+.|+|++|.+.. .+..  -..+|+.|+++++.++.  +..  .-+++
T Consensus       220 ~nL~~L~Ls~N~L------tsLP~~l~--~~L~~L~Ls~N~L~~-LP~~--l~s~L~~L~Ls~N~L~~--LP~--~l~~s  284 (754)
T PRK15370        220 GNIKTLYANSNQL------TSIPATLP--DTIQEMELSINRITE-LPER--LPSALQSLDLFHNKISC--LPE--NLPEE  284 (754)
T ss_pred             cCCCEEECCCCcc------ccCChhhh--ccccEEECcCCccCc-CChh--HhCCCCEEECcCCccCc--ccc--ccCCC
Confidence            3566666654332      34554332  467788887776543 1111  12467777777665521  111  12346


Q ss_pred             CcEEEeccc
Q 040471          200 LEDFEISAC  208 (340)
Q Consensus       200 L~~L~l~~c  208 (340)
                      |+.|++++|
T Consensus       285 L~~L~Ls~N  293 (754)
T PRK15370        285 LRYLSVYDN  293 (754)
T ss_pred             CcEEECCCC
Confidence            777777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=8.9e-05  Score=72.24  Aligned_cols=155  Identities=14%  Similarity=0.144  Sum_probs=83.4

Q ss_pred             HHHHHcCccEEEEEeecCCCCCccccCCccccC-CCCccEEEeeceeCCC-CCCcccccCcccceEecceEee-ChHHHH
Q 040471          115 GLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFS-AKSMATLSLFGCRMEQ-PSDTTTIRLDSLKKLTLENVYI-NDQMFQ  191 (340)
Q Consensus       115 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~-~~~~l~  191 (340)
                      ..-...++++|++++...    -...-|..++. +|+|++|.++|-.+.. .+...-.+||+|..|+++++.+ +-    
T Consensus       117 n~~sr~nL~~LdI~G~~~----~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----  188 (699)
T KOG3665|consen  117 NEESRQNLQHLDISGSEL----FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----  188 (699)
T ss_pred             hHHHHHhhhhcCccccch----hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----
Confidence            334445777777755332    11222222322 5667777777654422 2223334677777777777665 22    


Q ss_pred             HHHhcCCCCcEEEecccCCCc---ccccccCCCCceEEecccccccce-e-------eecCcCcceEeccCceeeccHHH
Q 040471          192 KLTNECPSLEDFEISACWGLK---NLCVSKAHKLKKLAIYTFYKDIGI-V-------EIVVPSLQQQLMLTSVWFMDEEF  260 (340)
Q Consensus       192 ~l~~~~p~L~~L~l~~c~~~~---~~~~~~~~~L~~L~i~~~~~~~~~-~-------~~~~p~L~~ll~l~~~~i~~~~~  260 (340)
                      .-.+..++|+.|.+.+-.--.   -..+-.+.+|+.|+|+........ +       .-.+|+|+.+ +.++..++.+.+
T Consensus       189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfL-DcSgTdi~~~~l  267 (699)
T KOG3665|consen  189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFL-DCSGTDINEEIL  267 (699)
T ss_pred             HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEE-ecCCcchhHHHH
Confidence            223445666666555432111   012234567777777765411111 1       1246777776 667777888888


Q ss_pred             HHHHcCCCcccEEecccC
Q 040471          261 DRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       261 ~~l~~~~~~L~~L~l~~c  278 (340)
                      ..+...=|+|+.+.+-.|
T Consensus       268 e~ll~sH~~L~~i~~~~~  285 (699)
T KOG3665|consen  268 EELLNSHPNLQQIAALDC  285 (699)
T ss_pred             HHHHHhCccHhhhhhhhh
Confidence            887777777777765543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.00013  Score=62.17  Aligned_cols=86  Identities=14%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ..++++++..+...   .-.++...+.+.+.|+.|+|+.+.+..+.........+|++|.|.+...+...........|.
T Consensus        71 ~~v~elDL~~N~iS---dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   71 TDVKELDLTGNLIS---DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhcccchhc---cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            57788888655431   234555566678889999998887765433333566789999998888877788888888888


Q ss_pred             CcEEEeccc
Q 040471          200 LEDFEISAC  208 (340)
Q Consensus       200 L~~L~l~~c  208 (340)
                      +++|.++.+
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            888877765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.27  E-value=1.8e-05  Score=76.58  Aligned_cols=128  Identities=16%  Similarity=0.121  Sum_probs=85.0

Q ss_pred             CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcc--cccccCCCCceE
Q 040471          148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKN--LCVSKAHKLKKL  225 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~--~~~~~~~~L~~L  225 (340)
                      .+.|+.|.+.++.+++..++...+++.||.|+|++++.+.-. ..-....+.||+|.++|+.- +.  .++..|+.|+.|
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp-as~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP-ASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTL  435 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC-HHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHH
Confidence            456888888889888888888899999999999999773111 11245678899999998743 22  245567788887


Q ss_pred             Eecccccccceeee-cCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCC
Q 040471          226 AIYTFYKDIGIVEI-VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRL  280 (340)
Q Consensus       226 ~i~~~~~~~~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~  280 (340)
                      ...++. .....++ ..|.|+.+ +++...++.-.+...... |+|++|+++++..
T Consensus       436 ~ahsN~-l~~fPe~~~l~qL~~l-DlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  436 RAHSNQ-LLSFPELAQLPQLKVL-DLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             hhcCCc-eeechhhhhcCcceEE-ecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            766554 1111122 35555555 666666555444432222 8999999998875

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.23  E-value=3.7e-06  Score=65.65  Aligned_cols=162  Identities=17%  Similarity=0.189  Sum_probs=88.8

Q ss_pred             cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCC-CcccccccCCCC
Q 040471          144 TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWG-LKNLCVSKAHKL  222 (340)
Q Consensus       144 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~-~~~~~~~~~~~L  222 (340)
                      .++...+++.|.|+.+.+.. .++..+.+.+|+.|++.++++.  .+..-.++.|+|+.|++....- ...-++.++|-|
T Consensus        28 gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence            35556677777777766543 2356677777888877776542  1222245677777777764321 112245567788


Q ss_pred             ceEEecccc---cccceeeecCcCcceEeccCceeeccHHHHH---HHcCCCcccEEecccCCCCcccccc---cccccE
Q 040471          223 KKLAIYTFY---KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDR---FISKFPLLEDLLLRFCRLPEKVKIS---SNQLKN  293 (340)
Q Consensus       223 ~~L~i~~~~---~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~---l~~~~~~L~~L~l~~c~~i~~~~~~---~~~L~~  293 (340)
                      +.|++.+..   ..+..-.+....|+.+      .++|++|..   -+..+.+|+.|.++.+..+ .++..   ..+|++
T Consensus       105 evldltynnl~e~~lpgnff~m~tlral------yl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre  177 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRAL------YLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE  177 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHH------HhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence            888877655   1111112222223322      233333332   2456788888888876543 22222   356777


Q ss_pred             EEeecCcchhhhccCCCCeeEEEEec
Q 040471          294 LHFNSCENLKAIDTDTPNLLSFTFSY  319 (340)
Q Consensus       294 L~l~~c~~l~~~~~~~p~L~~L~~~~  319 (340)
                      |.+.|..    +..-.|.|-.+++-|
T Consensus       178 lhiqgnr----l~vlppel~~l~l~~  199 (264)
T KOG0617|consen  178 LHIQGNR----LTVLPPELANLDLVG  199 (264)
T ss_pred             Hhcccce----eeecChhhhhhhhhh
Confidence            7776653    334456666665555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.21  E-value=0.00021  Score=60.92  Aligned_cols=59  Identities=15%  Similarity=0.128  Sum_probs=40.1

Q ss_pred             cCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEecccc
Q 040471          171 RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       171 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~  231 (340)
                      .+..|++++|+++.++  .+..-..-.|.++.|+++++.....=.+..+++|+.|+++++.
T Consensus       282 TWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~  340 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNL  340 (490)
T ss_pred             hHhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccch
Confidence            4667888888887662  2333345579999999988754322234557899999998765

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.17  E-value=0.00087  Score=60.69  Aligned_cols=32  Identities=19%  Similarity=0.170  Sum_probs=22.4

Q ss_pred             CcccEEecccCCCCcccccccccccEEEeecC
Q 040471          268 PLLEDLLLRFCRLPEKVKISSNQLKNLHFNSC  299 (340)
Q Consensus       268 ~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c  299 (340)
                      ++|++|++++|..+.-......+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            68999999988865322212368999998764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.10  E-value=9.2e-05  Score=74.07  Aligned_cols=82  Identities=18%  Similarity=0.092  Sum_probs=45.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +.++.|+++.+..     -.++|..+...-+|++|++++..+.. .+.+..++..|.+|++.....- ..+..+....++
T Consensus       571 ~~LrVLDLs~~~~-----l~~LP~~I~~Li~LryL~L~~t~I~~-LP~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~  643 (889)
T KOG4658|consen  571 PLLRVLDLSGNSS-----LSKLPSSIGELVHLRYLDLSDTGISH-LPSGLGNLKKLIYLNLEVTGRL-ESIPGILLELQS  643 (889)
T ss_pred             cceEEEECCCCCc-----cCcCChHHhhhhhhhcccccCCCccc-cchHHHHHHhhheecccccccc-ccccchhhhccc
Confidence            4555555554332     35677777767777777776665542 3344555666666666654431 111333444666


Q ss_pred             CcEEEeccc
Q 040471          200 LEDFEISAC  208 (340)
Q Consensus       200 L~~L~l~~c  208 (340)
                      |++|.+..-
T Consensus       644 Lr~L~l~~s  652 (889)
T KOG4658|consen  644 LRVLRLPRS  652 (889)
T ss_pred             ccEEEeecc
Confidence            777766543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.06  E-value=0.00019  Score=46.88  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=14.7

Q ss_pred             CccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471          150 SMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI  185 (340)
Q Consensus       150 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  185 (340)
                      +|++|.+++|.+..-....+..+++|++|+++++.+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l   37 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNL   37 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSE
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCcc
Confidence            344455554433221111223444455555544443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.00012  Score=58.82  Aligned_cols=92  Identities=22%  Similarity=0.317  Sum_probs=68.9

Q ss_pred             cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccccc--
Q 040471          140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLCV--  216 (340)
Q Consensus       140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~--  216 (340)
                      .+|..-..--.++.++-+++.+.........+++.++.|.+.+|.. +|..++.+....|+|++|+|++|..+++-.+  
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            4554333334466777777655433334566789999999999988 9999999999999999999999999887543  


Q ss_pred             -ccCCCCceEEecccc
Q 040471          217 -SKAHKLKKLAIYTFY  231 (340)
Q Consensus       217 -~~~~~L~~L~i~~~~  231 (340)
                       ..+++|+.|.+.+-.
T Consensus       172 L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYDLP  187 (221)
T ss_pred             HHHhhhhHHHHhcCch
Confidence             456888888887544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.00  E-value=0.00026  Score=62.75  Aligned_cols=37  Identities=16%  Similarity=0.147  Sum_probs=22.2

Q ss_pred             ccccEEEeecCcch--hhhccCCCCeeEEEEeccCCCCc
Q 040471          289 NQLKNLHFNSCENL--KAIDTDTPNLLSFTFSYDFNPIP  325 (340)
Q Consensus       289 ~~L~~L~l~~c~~l--~~~~~~~p~L~~L~~~~~~~~~~  325 (340)
                      .+|+.|++.+.+-.  -.+...+.||++|+++|+.+..|
T Consensus       505 ~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  505 RNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             hhcceeccCCCchhhCChhhccccceeEEEecCCccCCC
Confidence            34455554443321  23334568899999999877764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.96  E-value=0.00028  Score=46.00  Aligned_cols=59  Identities=19%  Similarity=0.209  Sum_probs=43.0

Q ss_pred             cCccEEEEEeecCCCCCccccCCccc-cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEe
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTI-FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY  184 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~  184 (340)
                      ++++.|++..+..      ..+|... ..+++|++|+++++.+..-....+..+++|++|+++++.
T Consensus         1 p~L~~L~l~~n~l------~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKL------TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTE------SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCC------CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4678888866643      5666544 458999999999988754222345788999999998765

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.93  E-value=0.00086  Score=57.27  Aligned_cols=82  Identities=15%  Similarity=0.159  Sum_probs=55.0

Q ss_pred             CccEEEeeceeCCCC--CCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCccc-cc-ccCCCCce
Q 040471          150 SMATLSLFGCRMEQP--SDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNL-CV-SKAHKLKK  224 (340)
Q Consensus       150 ~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-~~-~~~~~L~~  224 (340)
                      -++-|-+.+|.++..  .......+..++.|+|.++.+ +...+.++..+.|.|+.|+++.+.--..+ +. ....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            344555666666542  222344678899999999988 66778889999999999999866432222 11 12467888


Q ss_pred             EEecccc
Q 040471          225 LAIYTFY  231 (340)
Q Consensus       225 L~i~~~~  231 (340)
                      |.+.+..
T Consensus       126 lVLNgT~  132 (418)
T KOG2982|consen  126 LVLNGTG  132 (418)
T ss_pred             EEEcCCC
Confidence            8888765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.91  E-value=0.00015  Score=64.07  Aligned_cols=62  Identities=13%  Similarity=0.145  Sum_probs=43.5

Q ss_pred             HHHcCCCcccEEecccCCCCcccccc----cccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          262 RFISKFPLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       262 ~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      .-+..+|+|+.|+++++. ++.+...    ...+++|.+....--   ..+.....+|++|++.|++.+.
T Consensus       268 ~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~  336 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT  336 (498)
T ss_pred             HHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE
Confidence            346778999999999654 5555443    367888887765431   3445567889999999977765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.89  E-value=0.00032  Score=59.88  Aligned_cols=154  Identities=13%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             ccCCccccCCCCccEEEeecee--CCC------CCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCC
Q 040471          139 CILPQTIFSAKSMATLSLFGCR--MEQ------PSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWG  210 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~--~~~------~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~  210 (340)
                      +.+...+--|..|..|..++..  ++.      ........|.+|+++.++.|.  .+.+..+...=|.|.++.+.+...
T Consensus       172 ~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~  249 (490)
T KOG1259|consen  172 YDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTI  249 (490)
T ss_pred             cchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccc
Confidence            3444444457789999988742  221      111233458899999988774  344555556678888887765422


Q ss_pred             C-------------------------cccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHH
Q 040471          211 L-------------------------KNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFI  264 (340)
Q Consensus       211 ~-------------------------~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~  264 (340)
                      -                         ....+.....|+.++++++. ..+....--+|+++.+ +++++.|..-.-   +
T Consensus       250 ~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L-~lS~N~i~~v~n---L  325 (490)
T KOG1259|consen  250 QDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRL-ILSQNRIRTVQN---L  325 (490)
T ss_pred             cccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEE-eccccceeeehh---h
Confidence            0                         00111224567777777665 2222222346777776 555554432221   4


Q ss_pred             cCCCcccEEecccCCCCcc--cccccccccEEEeec
Q 040471          265 SKFPLLEDLLLRFCRLPEK--VKISSNQLKNLHFNS  298 (340)
Q Consensus       265 ~~~~~L~~L~l~~c~~i~~--~~~~~~~L~~L~l~~  298 (340)
                      .++++|++|+++++..-+-  ......+++.|.+.+
T Consensus       326 a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  326 AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            5678888888887654222  222234555555543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.88  E-value=0.00028  Score=60.82  Aligned_cols=38  Identities=34%  Similarity=0.557  Sum_probs=35.7

Q ss_pred             cCCccCCCc----hhHHHHHhcCCchhhhhhhhcccccchhh
Q 040471            6 GMDRITELP----TFIIHHIMSYLSAKEIARTSILSKRWCLF   43 (340)
Q Consensus         6 ~~d~i~~LP----d~il~~Ifs~L~~~d~~~~s~vskrW~~l   43 (340)
                      .+|.|+.||    |+|...||+||+..++.+|..|||+|+++
T Consensus        71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            468999999    99999999999999999999999999974

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.37  E-value=0.0015  Score=65.68  Aligned_cols=90  Identities=21%  Similarity=0.234  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee--Ch
Q 040471          110 LDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI--ND  187 (340)
Q Consensus       110 l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~--~~  187 (340)
                      +..-++..+  ++|.|++..+..      ..+|..+...+.|.+|++.....-.........+++||+|.+.....  +.
T Consensus       587 LP~~I~~Li--~LryL~L~~t~I------~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~  658 (889)
T KOG4658|consen  587 LPSSIGELV--HLRYLDLSDTGI------SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDK  658 (889)
T ss_pred             CChHHhhhh--hhhcccccCCCc------cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccch
Confidence            333344433  677777766654      68999999999999999997542221112334589999999987764  33


Q ss_pred             HHHHHHHhcCCCCcEEEeccc
Q 040471          188 QMFQKLTNECPSLEDFEISAC  208 (340)
Q Consensus       188 ~~l~~l~~~~p~L~~L~l~~c  208 (340)
                      ..+.. +....+|+.+.+..+
T Consensus       659 ~~l~e-l~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  659 LLLKE-LENLEHLENLSITIS  678 (889)
T ss_pred             hhHHh-hhcccchhhheeecc
Confidence            33333 355566666655443

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=96.35  E-value=0.0019  Score=57.75  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=34.5

Q ss_pred             CccCCCchhHHHHHhcCCc-hhhhhhhhcccccchhhhc
Q 040471            8 DRITELPTFIIHHIMSYLS-AKEIARTSILSKRWCLFCI   45 (340)
Q Consensus         8 d~i~~LPd~il~~Ifs~L~-~~d~~~~s~vskrW~~l~~   45 (340)
                      -+|++||+|+|..|..+|+ ..|++|.+.|||.||....
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            3599999999999999996 8999999999999998654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.00074  Score=57.14  Aligned_cols=56  Identities=21%  Similarity=0.210  Sum_probs=26.4

Q ss_pred             CcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEeccc
Q 040471          172 LDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTF  230 (340)
Q Consensus       172 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~  230 (340)
                      +.+.++|++++|.++|-.   +....|.||.|.|+-+..-.--.+..|.+|++|-+..+
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN   73 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN   73 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc
Confidence            344555666666554322   22345666666665432211113344555555555433

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.11  E-value=0.008  Score=31.51  Aligned_cols=25  Identities=36%  Similarity=0.757  Sum_probs=22.5

Q ss_pred             ccceEecceEee-ChHHHHHHHhcCC
Q 040471          174 SLKKLTLENVYI-NDQMFQKLTNECP  198 (340)
Q Consensus       174 ~L~~L~L~~~~~-~~~~l~~l~~~~p  198 (340)
                      +||+|+|.++.+ +++.++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 6778999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.02  E-value=0.0063  Score=51.52  Aligned_cols=157  Identities=15%  Similarity=0.103  Sum_probs=90.6

Q ss_pred             ccccCcccceEecceEee---ChHHHHHHHhcCCCCcEEEecccCC--Ccc---------c----ccccCCCCceEEecc
Q 040471          168 TTIRLDSLKKLTLENVYI---NDQMFQKLTNECPSLEDFEISACWG--LKN---------L----CVSKAHKLKKLAIYT  229 (340)
Q Consensus       168 ~~~~~~~L~~L~L~~~~~---~~~~l~~l~~~~p~L~~L~l~~c~~--~~~---------~----~~~~~~~L~~L~i~~  229 (340)
                      ....||.|++.+|+++.+   ..+.+..+++....|++|.+++|.-  +..         +    -..+-|.|+......
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            345677888888887777   4456777778888888888888732  100         0    112347777777665


Q ss_pred             cc--ccccee---eecC-cCcceEeccCceeeccHHHHHH----HcCCCcccEEecccCCC-------Cccccccccccc
Q 040471          230 FY--KDIGIV---EIVV-PSLQQQLMLTSVWFMDEEFDRF----ISKFPLLEDLLLRFCRL-------PEKVKISSNQLK  292 (340)
Q Consensus       230 ~~--~~~~~~---~~~~-p~L~~ll~l~~~~i~~~~~~~l----~~~~~~L~~L~l~~c~~-------i~~~~~~~~~L~  292 (340)
                      +.  .+....   .+.. .+|+.+ .+..+.|..+++..+    +..+.+|+.|++..+..       +.+.....+.|+
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~v-ki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEV-KIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeE-EeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            54  111110   0111 234443 344444555543322    35688999999987653       222222357789


Q ss_pred             EEEeecCcch--------hhh-ccCCCCeeEEEEeccCCCCc
Q 040471          293 NLHFNSCENL--------KAI-DTDTPNLLSFTFSYDFNPIP  325 (340)
Q Consensus       293 ~L~l~~c~~l--------~~~-~~~~p~L~~L~~~~~~~~~~  325 (340)
                      +|.+..|---        ..+ ....|||+.|.+.++.....
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            9999887431        111 23458999988777665543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.92  E-value=0.0024  Score=51.56  Aligned_cols=49  Identities=24%  Similarity=0.304  Sum_probs=39.6

Q ss_pred             eeccHHHHHHHcCCCcccEEecccCCCCcccccc----cccccEEEeecCcch
Q 040471          254 WFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCENL  302 (340)
Q Consensus       254 ~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~~l  302 (340)
                      .+.|.++..+..-.|+|+.|+|++|+.|++-++.    +++|+.|.+.+.+..
T Consensus       137 ~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  137 YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             chhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            4556667777677899999999999999998887    488999988876654

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.87  E-value=0.013  Score=53.31  Aligned_cols=137  Identities=20%  Similarity=0.238  Sum_probs=76.6

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCce
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKK  224 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~  224 (340)
                      +..|+++++|++++|.+..  .+  .--++|+.|.+.+|..- ..+...  -.++|++|.+.+|..+..+    -+.|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~s--LP--~LP~sLtsL~Lsnc~nL-tsLP~~--LP~nLe~L~Ls~Cs~L~sL----P~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES--LP--VLPNELTEITIENCNNL-TTLPGS--IPEGLEKLTVCHCPEISGL----PESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc--cC--CCCCCCcEEEccCCCCc-ccCCch--hhhhhhheEccCccccccc----ccccce
Confidence            3447889999999885543  11  11235888888776530 011111  1357788888877655432    145666


Q ss_pred             EEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCc--cccc-ccccccEEEeecCcc
Q 040471          225 LAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPE--KVKI-SSNQLKNLHFNSCEN  301 (340)
Q Consensus       225 L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~--~~~~-~~~~L~~L~l~~c~~  301 (340)
                      |.+.+..         +                   ..+..-.++|++|.+.++....  ..+. ..++|+.|.+.+|..
T Consensus       117 L~L~~n~---------~-------------------~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~  168 (426)
T PRK15386        117 LEIKGSA---------T-------------------DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN  168 (426)
T ss_pred             EEeCCCC---------C-------------------cccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence            6665322         0                   0111123567888875433221  1121 236899999999987


Q ss_pred             hhhhccCCCCeeEEEEecc
Q 040471          302 LKAIDTDTPNLLSFTFSYD  320 (340)
Q Consensus       302 l~~~~~~~p~L~~L~~~~~  320 (340)
                      +.--..-.++|++|.+...
T Consensus       169 i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        169 IILPEKLPESLQSITLHIE  187 (426)
T ss_pred             ccCcccccccCcEEEeccc
Confidence            5311123368999988653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.84  E-value=0.009  Score=57.32  Aligned_cols=198  Identities=20%  Similarity=0.193  Sum_probs=101.6

Q ss_pred             ccCcccceEEEEEeccCcCCChhhHH---HHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCC
Q 040471           86 KLRFRMQELRLFQSFLDVKGSAPLLD---KWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRME  162 (340)
Q Consensus        86 ~~~~~l~~l~l~~~~~~~~~~~~~l~---~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  162 (340)
                      .++.+++.|+...+-   ..+...+.   +++..  -+..+.+.+--...    .+..=|-.++.+++|+.|.|.+|.+.
T Consensus        52 ~~g~~~~~f~a~~s~---~ads~vl~qLq~i~d~--lqkt~~lkl~~~pa----~~pt~pi~ifpF~sLr~LElrg~~L~  122 (1096)
T KOG1859|consen   52 LSGAPVDYFRAYVSD---NADSRVLEQLQRILDF--LQKTKVLKLLPSPA----RDPTEPISIFPFRSLRVLELRGCDLS  122 (1096)
T ss_pred             cCCCCCceeEEecCC---cccchHHHHHHHHHHH--HhhheeeeecccCC----CCCCCCceeccccceeeEEecCcchh
Confidence            446788888877552   22332232   22222  24555555533332    23333778899999999999998765


Q ss_pred             CCCCcccccC-cccceE--------------------------------ecceEeeChHHHHHHHhcCCCCcEEEecccC
Q 040471          163 QPSDTTTIRL-DSLKKL--------------------------------TLENVYINDQMFQKLTNECPSLEDFEISACW  209 (340)
Q Consensus       163 ~~~~~~~~~~-~~L~~L--------------------------------~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~  209 (340)
                      ..-  +...+ ..|++|                                +++.++.  ..+..-+.-.|.|+.|+++.+.
T Consensus       123 ~~~--GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk  198 (1096)
T KOG1859|consen  123 TAK--GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNK  198 (1096)
T ss_pred             hhh--hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhh
Confidence            411  11110 122222                                2222211  1122223335677788887764


Q ss_pred             CCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc-
Q 040471          210 GLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS-  287 (340)
Q Consensus       210 ~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~-  287 (340)
                      -...-.+..|++|++|+|+.+. ..+..+.-..-+|..| .+.++.++.   ..-+.++.+|+.|+++.+-..+.--.. 
T Consensus       199 ~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L-~lrnN~l~t---L~gie~LksL~~LDlsyNll~~hseL~p  274 (1096)
T KOG1859|consen  199 FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLL-NLRNNALTT---LRGIENLKSLYGLDLSYNLLSEHSELEP  274 (1096)
T ss_pred             hhhhHHHHhcccccccccccchhccccccchhhhhheee-eecccHHHh---hhhHHhhhhhhccchhHhhhhcchhhhH
Confidence            3222245668889999988765 3333333322235444 444433321   112456788889999864322111111 


Q ss_pred             ---cccccEEEeecCc
Q 040471          288 ---SNQLKNLHFNSCE  300 (340)
Q Consensus       288 ---~~~L~~L~l~~c~  300 (340)
                         ...|+.|.+.|++
T Consensus       275 LwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  275 LWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             HHHHHHHHHHhhcCCc
Confidence               2467777777644

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.77  E-value=0.00095  Score=55.91  Aligned_cols=13  Identities=31%  Similarity=0.340  Sum_probs=6.4

Q ss_pred             CCcccEEecccCC
Q 040471          267 FPLLEDLLLRFCR  279 (340)
Q Consensus       267 ~~~L~~L~l~~c~  279 (340)
                      .++|..|++.+|.
T Consensus       115 l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  115 LENLKSLDLFNCS  127 (260)
T ss_pred             hcchhhhhcccCC
Confidence            3445555555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.62  E-value=0.0033  Score=52.73  Aligned_cols=89  Identities=22%  Similarity=0.248  Sum_probs=57.1

Q ss_pred             CCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCC--Cccc-cc
Q 040471          141 LPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWG--LKNL-CV  216 (340)
Q Consensus       141 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~--~~~~-~~  216 (340)
                      +........+|+.|++.++.+.+  ....-.+|+||+|.++.++. ....+.-++..||+|++|+++++..  +..+ ..
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            44444445667777777765432  11223567889999988865 4556777788889999999988743  2222 22


Q ss_pred             ccCCCCceEEecccc
Q 040471          217 SKAHKLKKLAIYTFY  231 (340)
Q Consensus       217 ~~~~~L~~L~i~~~~  231 (340)
                      ..+++|..|++.+|.
T Consensus       113 ~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  113 KELENLKSLDLFNCS  127 (260)
T ss_pred             hhhcchhhhhcccCC
Confidence            345677777777776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.62  E-value=0.008  Score=36.14  Aligned_cols=12  Identities=17%  Similarity=0.332  Sum_probs=4.4

Q ss_pred             CccEEEeeceeC
Q 040471          150 SMATLSLFGCRM  161 (340)
Q Consensus       150 ~L~~L~L~~~~~  161 (340)
                      +|++|+++++.+
T Consensus         2 ~L~~L~l~~N~i   13 (44)
T PF12799_consen    2 NLEELDLSNNQI   13 (44)
T ss_dssp             T-SEEEETSSS-
T ss_pred             cceEEEccCCCC
Confidence            344444444443

...

>PLN03150 hypothetical protein; Provisional

Probab=95.57  E-value=0.014  Score=57.07  Aligned_cols=80  Identities=15%  Similarity=0.097  Sum_probs=56.1

Q ss_pred             ccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCceEEec
Q 040471          151 MATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKKLAIY  228 (340)
Q Consensus       151 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~  228 (340)
                      ++.|+|+++.+....+.....+++|+.|+|+++.+... +......+++|+.|+++++.-...+  .+..+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            77888888776554445566788899999988876432 2223567888999999887543222  35567889999888


Q ss_pred             ccc
Q 040471          229 TFY  231 (340)
Q Consensus       229 ~~~  231 (340)
                      ++.
T Consensus       499 ~N~  501 (623)
T PLN03150        499 GNS  501 (623)
T ss_pred             CCc
Confidence            775

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.45  E-value=0.0069  Score=52.05  Aligned_cols=38  Identities=16%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             CccCCCchhHHHHHhcC-----Cchhhhhhhhcccccchhhhc
Q 040471            8 DRITELPTFIIHHIMSY-----LSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus         8 d~i~~LPd~il~~Ifs~-----L~~~d~~~~s~vskrW~~l~~   45 (340)
                      +.|+.||||||..||..     |+.+++.++|+|||.|+...+
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R  147 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR  147 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence            44789999999999964     567999999999999986543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.42  E-value=0.02  Score=46.37  Aligned_cols=85  Identities=21%  Similarity=0.158  Sum_probs=54.3

Q ss_pred             cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCC-----cccccccC
Q 040471          146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGL-----KNLCVSKA  219 (340)
Q Consensus       146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~-----~~~~~~~~  219 (340)
                      ...+.|+.|.|.++.+..-.......+|+|+.|.|.++.+ .-..++- ...||.|++|.+-+...-     .-..+..+
T Consensus        61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~YR~yvl~kl  139 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKNYRLYVLYKL  139 (233)
T ss_pred             CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccCceeEEEEec
Confidence            3467788888888765432222344578888888888876 4444554 356888888888776431     11123456


Q ss_pred             CCCceEEecccc
Q 040471          220 HKLKKLAIYTFY  231 (340)
Q Consensus       220 ~~L~~L~i~~~~  231 (340)
                      |+|+.|+..+..
T Consensus       140 p~l~~LDF~kVt  151 (233)
T KOG1644|consen  140 PSLRTLDFQKVT  151 (233)
T ss_pred             CcceEeehhhhh
Confidence            888888777644

>PLN03150 hypothetical protein; Provisional

Probab=95.25  E-value=0.024  Score=55.35  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=71.8

Q ss_pred             ccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCc
Q 040471          122 IKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLE  201 (340)
Q Consensus       122 l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~  201 (340)
                      +..|++..+..     ...+|..+..+++|+.|+|+++.+....+.....+++|+.|+|+++.++... ...+..+++|+
T Consensus       420 v~~L~L~~n~L-----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~  493 (623)
T PLN03150        420 IDGLGLDNQGL-----RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PESLGQLTSLR  493 (623)
T ss_pred             EEEEECCCCCc-----cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC-chHHhcCCCCC
Confidence            55566644433     3467888888999999999999886555556778999999999999874332 23356799999


Q ss_pred             EEEecccCCCccc--cccc-CCCCceEEecccc
Q 040471          202 DFEISACWGLKNL--CVSK-AHKLKKLAIYTFY  231 (340)
Q Consensus       202 ~L~l~~c~~~~~~--~~~~-~~~L~~L~i~~~~  231 (340)
                      .|+++++.-...+  .+.. ..++..+++.++.
T Consensus       494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            9999988532222  1111 2355667776654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.08  E-value=0.0013  Score=51.76  Aligned_cols=60  Identities=20%  Similarity=0.160  Sum_probs=35.0

Q ss_pred             CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeCh
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIND  187 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~  187 (340)
                      +++.|++..+      ...++|.++.+.++|+.|+++-+++.. .+.++..||.|+.|+|.++..++
T Consensus        57 nlevln~~nn------qie~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldltynnl~e  116 (264)
T KOG0617|consen   57 NLEVLNLSNN------QIEELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDLTYNNLNE  116 (264)
T ss_pred             hhhhhhcccc------hhhhcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhcccccccc
Confidence            4455555333      235677777777777777776655432 22345566777777776665543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=94.42  E-value=0.018  Score=30.11  Aligned_cols=20  Identities=25%  Similarity=0.258  Sum_probs=15.0

Q ss_pred             CCcccEEecccCCCCccccc
Q 040471          267 FPLLEDLLLRFCRLPEKVKI  286 (340)
Q Consensus       267 ~~~L~~L~l~~c~~i~~~~~  286 (340)
                      ||+|++|++++|..++|.++
T Consensus         1 c~~L~~L~l~~C~~itD~gl   20 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGL   20 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHH
Confidence            57788888888887777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.42  E-value=0.036  Score=50.99  Aligned_cols=153  Identities=20%  Similarity=0.173  Sum_probs=75.0

Q ss_pred             ccCCccccCCC-CccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccccc-
Q 040471          139 CILPQTIFSAK-SMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCV-  216 (340)
Q Consensus       139 ~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~-  216 (340)
                      ..++......+ +|+.|+++++.+..- ......+++|+.|.+.++.+++  +.......++|+.|.+++..- ..+.. 
T Consensus       129 ~~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N~i-~~l~~~  204 (394)
T COG4886         129 TDIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKI-SDLPPE  204 (394)
T ss_pred             ccCccccccchhhcccccccccchhhh-hhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCCcc-ccCchh
Confidence            45555555553 677777777665431 1134566777777777765521  122122566777777776532 22111 


Q ss_pred             -ccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc--cccccc
Q 040471          217 -SKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI--SSNQLK  292 (340)
Q Consensus       217 -~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~--~~~~L~  292 (340)
                       .....|++|.+.+.. ...........++..+ .+.+..+.+  +...+..+++|+.|+++++. ++++..  ...+++
T Consensus       205 ~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l-~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~  280 (394)
T COG4886         205 IELLSALEELDLSNNSIIELLSSLSNLKNLSGL-ELSNNKLED--LPESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLR  280 (394)
T ss_pred             hhhhhhhhhhhhcCCcceecchhhhhccccccc-ccCCceeee--ccchhccccccceecccccc-ccccccccccCccC
Confidence             122336666666552 0111111112222222 122222211  13445667778888888544 444332  246777


Q ss_pred             EEEeecC
Q 040471          293 NLHFNSC  299 (340)
Q Consensus       293 ~L~l~~c  299 (340)
                      .|++++.
T Consensus       281 ~L~~s~n  287 (394)
T COG4886         281 ELDLSGN  287 (394)
T ss_pred             EEeccCc
Confidence            7777663

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.29  E-value=0.0034  Score=53.25  Aligned_cols=96  Identities=19%  Similarity=0.097  Sum_probs=53.6

Q ss_pred             CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCC
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPS  199 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~  199 (340)
                      +++.|+..+|..    .+..+.   ...+.|+.|.|+-+.+..  ......|.+|+.|.|..+.+ +.+.+.. +.+.|+
T Consensus        20 ~vkKLNcwg~~L----~DIsic---~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~Y-Lknlps   89 (388)
T KOG2123|consen   20 NVKKLNCWGCGL----DDISIC---EKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPS   89 (388)
T ss_pred             HhhhhcccCCCc----cHHHHH---HhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHH-HhcCch
Confidence            455666655544    222222   224556777777666543  12345677777777777776 5555655 356777


Q ss_pred             CcEEEecccCCCcc-------cccccCCCCceEE
Q 040471          200 LEDFEISACWGLKN-------LCVSKAHKLKKLA  226 (340)
Q Consensus       200 L~~L~l~~c~~~~~-------~~~~~~~~L~~L~  226 (340)
                      |+.|.|..+.....       ..++.+|+|+.|+
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            77777765433211       1233456666664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.15  E-value=0.029  Score=33.66  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=28.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQ  163 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  163 (340)
                      +++++|++..+..      ..+|+.+..+++|+.|+++++.+..
T Consensus         1 ~~L~~L~l~~N~i------~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQI------TDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-------SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCC------cccCchHhCCCCCCEEEecCCCCCC
Confidence            3678888866654      5678778899999999999987753

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=93.84  E-value=0.049  Score=28.45  Aligned_cols=17  Identities=29%  Similarity=0.995  Sum_probs=7.8

Q ss_pred             CCCCcEEEecccCCCcc
Q 040471          197 CPSLEDFEISACWGLKN  213 (340)
Q Consensus       197 ~p~L~~L~l~~c~~~~~  213 (340)
                      ||+|++|++++|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            34444444444444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.66  E-value=0.13  Score=41.91  Aligned_cols=36  Identities=28%  Similarity=0.274  Sum_probs=17.6

Q ss_pred             cCCCcccEEecccCCCCcc------cccccccccEEEeecCc
Q 040471          265 SKFPLLEDLLLRFCRLPEK------VKISSNQLKNLHFNSCE  300 (340)
Q Consensus       265 ~~~~~L~~L~l~~c~~i~~------~~~~~~~L~~L~l~~c~  300 (340)
                      ..||.|++|.+-+++.-..      +.-..|+|+.|++.+..
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            4566666666665442111      11124666666665543

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=93.23  E-value=0.037  Score=52.72  Aligned_cols=39  Identities=21%  Similarity=0.463  Sum_probs=36.3

Q ss_pred             ccCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhh
Q 040471            5 KGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLF   43 (340)
Q Consensus         5 ~~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l   43 (340)
                      ..+|.++.||-++..+||+||+.++++++++||+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            356899999999999999999999999999999999875

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=93.22  E-value=0.037  Score=50.93  Aligned_cols=147  Identities=18%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCC
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSL  200 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  200 (340)
                      +++.|++.....      ..+|..+..+++|+.|.++.+.+... .......++|+.|+++++.+.+  +.........|
T Consensus       141 nL~~L~l~~N~i------~~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls~N~i~~--l~~~~~~~~~L  211 (394)
T COG4886         141 NLKELDLSDNKI------ESLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLSGNKISD--LPPEIELLSAL  211 (394)
T ss_pred             hcccccccccch------hhhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheeccCCcccc--Cchhhhhhhhh
Confidence            677777755443      45556678899999999999987651 1222278999999999988721  11112334558


Q ss_pred             cEEEecccCCCccc-ccccCCCCceEEeccccc-ccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471          201 EDFEISACWGLKNL-CVSKAHKLKKLAIYTFYK-DIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       201 ~~L~l~~c~~~~~~-~~~~~~~L~~L~i~~~~~-~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c  278 (340)
                      ++|.+++....... .+..+.++..+.+..... .........+.++.+ .+.+..+++-..   +....+|++|++++.
T Consensus       212 ~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L-~~s~n~i~~i~~---~~~~~~l~~L~~s~n  287 (394)
T COG4886         212 EELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL-DLSNNQISSISS---LGSLTNLRELDLSGN  287 (394)
T ss_pred             hhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccccccee-cccccccccccc---ccccCccCEEeccCc
Confidence            88888877433322 233445555555443331 111222345567666 666665554333   567789999999876


Q ss_pred             CC
Q 040471          279 RL  280 (340)
Q Consensus       279 ~~  280 (340)
                      ..
T Consensus       288 ~~  289 (394)
T COG4886         288 SL  289 (394)
T ss_pred             cc
Confidence            54

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.02  E-value=0.003  Score=56.25  Aligned_cols=47  Identities=21%  Similarity=0.252  Sum_probs=28.5

Q ss_pred             cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471          138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI  185 (340)
Q Consensus       138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  185 (340)
                      ..++++.++.|..|..|+..++.+.. .++.+.++.+|..+.+.++..
T Consensus       126 ~~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l  172 (565)
T KOG0472|consen  126 LKELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKL  172 (565)
T ss_pred             eeecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccch
Confidence            35666677777777777666665543 223445566666666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.18  E-value=0.17  Score=25.73  Aligned_cols=23  Identities=30%  Similarity=0.293  Sum_probs=13.6

Q ss_pred             CcccceEecceEeeChHHHHHHH
Q 040471          172 LDSLKKLTLENVYINDQMFQKLT  194 (340)
Q Consensus       172 ~~~L~~L~L~~~~~~~~~l~~l~  194 (340)
                      +++|++|+|+++.++++++..+.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            36677777777777666666553

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.28  E-value=0.2  Score=48.59  Aligned_cols=54  Identities=20%  Similarity=0.335  Sum_probs=29.6

Q ss_pred             cCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCC--CcccccccccccEEEeecC
Q 040471          242 PSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRL--PEKVKISSNQLKNLHFNSC  299 (340)
Q Consensus       242 p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~L~~L~l~~c  299 (340)
                      |++++| +++++.+++..   .+..|+.|+||+|+.+..  +..++...-+|..|.++++
T Consensus       187 ~ale~L-nLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  187 PALESL-NLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             HHhhhh-ccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeeccc
Confidence            444444 66665555443   455678888888876543  2223222223666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.24  E-value=0.074  Score=49.34  Aligned_cols=81  Identities=19%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcc-cccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCC
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTT-TIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKL  222 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L  222 (340)
                      +..+++|+.|.+.++.+..-  .. ...+++|+.|+++++.+ +...+..    ++.|+.|++.++..-..-....++.|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDISGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhhc--ccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhccCCccchhh
Confidence            44567888888887766541  12 45678888888888777 4444443    44488888887644332233335677


Q ss_pred             ceEEecccc
Q 040471          223 KKLAIYTFY  231 (340)
Q Consensus       223 ~~L~i~~~~  231 (340)
                      +.++++++.
T Consensus       165 ~~l~l~~n~  173 (414)
T KOG0531|consen  165 KLLDLSYNR  173 (414)
T ss_pred             hcccCCcch
Confidence            777777665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=88.76  E-value=0.29  Score=22.60  Aligned_cols=12  Identities=42%  Similarity=0.351  Sum_probs=5.9

Q ss_pred             CcccEEecccCC
Q 040471          268 PLLEDLLLRFCR  279 (340)
Q Consensus       268 ~~L~~L~l~~c~  279 (340)
                      ++|+.|++++|.
T Consensus         1 ~~L~~L~l~~n~   12 (17)
T PF13504_consen    1 PNLRTLDLSNNR   12 (17)
T ss_dssp             TT-SEEEETSS-
T ss_pred             CccCEEECCCCC
Confidence            356666666555

...

>PF13013 F-box-like_2: F-box-like domain

Probab=88.17  E-value=0.25  Score=36.06  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=26.9

Q ss_pred             cCCCchhHHHHHhcCCchhhhhhhhcccc
Q 040471           10 ITELPTFIIHHIMSYLSAKEIARTSILSK   38 (340)
Q Consensus        10 i~~LPd~il~~Ifs~L~~~d~~~~s~vsk   38 (340)
                      +.+||+|++..||.+-+..+...+...|+
T Consensus        22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   22 LLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            78899999999999999999999988877

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=87.91  E-value=0.69  Score=39.60  Aligned_cols=162  Identities=14%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             CCCccEEEeeceeCCCCCCc----ccccCcccceEecceEee---ChHH------HHHHHhcCCCCcEEEecccCC-Ccc
Q 040471          148 AKSMATLSLFGCRMEQPSDT----TTIRLDSLKKLTLENVYI---NDQM------FQKLTNECPSLEDFEISACWG-LKN  213 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~----~~~~~~~L~~L~L~~~~~---~~~~------l~~l~~~~p~L~~L~l~~c~~-~~~  213 (340)
                      ...++.+.|+|++++...+.    ..++-.+|+..++++...   -++-      +...+..||.|+..+++.+.- ...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            56677888888777552221    223446677777766543   1111      222234678888777776522 110


Q ss_pred             ---c--ccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccH----HHHHHHcCCCcccEEecccCCCCcc-
Q 040471          214 ---L--CVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDE----EFDRFISKFPLLEDLLLRFCRLPEK-  283 (340)
Q Consensus       214 ---~--~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~----~~~~l~~~~~~L~~L~l~~c~~i~~-  283 (340)
                         +  .+.+...|++|.+++|.  ...+             .+.+|...    +...-...-|.|+......++.-.- 
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnG--lGp~-------------aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNG--LGPI-------------AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCC--CCcc-------------chhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence               1  13344667777777665  1110             11111111    2223356678888888887665211 


Q ss_pred             -----ccccc-ccccEEEeecCcch--------hhhccCCCCeeEEEEeccCCCC
Q 040471          284 -----VKISS-NQLKNLHFNSCENL--------KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       284 -----~~~~~-~~L~~L~l~~c~~l--------~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                           ....+ ..|+.+.+..+.--        ..-...+.+|+-|++..+.++.
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence                 11112 36777776654321        1112345677777776655543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=87.65  E-value=0.3  Score=24.23  Aligned_cols=18  Identities=28%  Similarity=-0.068  Sum_probs=9.6

Q ss_pred             cccEEecccCCCCcccccc
Q 040471          269 LLEDLLLRFCRLPEKVKIS  287 (340)
Q Consensus       269 ~L~~L~l~~c~~i~~~~~~  287 (340)
                      +|++|++++| .++.++..
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            3566666666 34444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=85.97  E-value=0.14  Score=47.41  Aligned_cols=81  Identities=19%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCcccc--cccCCC
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLC--VSKAHK  221 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~--~~~~~~  221 (340)
                      +..+++|+.|+++++.+..-  .....++.|+.|++.++.+ +...+..    +++|+.++++++.....-.  ...+.+
T Consensus       114 l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~~~~----l~~L~~l~l~~n~i~~ie~~~~~~~~~  187 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISGLES----LKSLKLLDLSYNRIVDIENDELSELIS  187 (414)
T ss_pred             hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccCCcc----chhhhcccCCcchhhhhhhhhhhhccc
Confidence            44567777777777766441  2344556677777777665 3222222    5666666666654432222  244566


Q ss_pred             CceEEecccc
Q 040471          222 LKKLAIYTFY  231 (340)
Q Consensus       222 L~~L~i~~~~  231 (340)
                      ++.+.+++..
T Consensus       188 l~~l~l~~n~  197 (414)
T KOG0531|consen  188 LEELDLGGNS  197 (414)
T ss_pred             hHHHhccCCc
Confidence            6666666544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=82.78  E-value=0.76  Score=41.41  Aligned_cols=83  Identities=11%  Similarity=0.069  Sum_probs=48.8

Q ss_pred             cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCC--CcccccccCCCCc
Q 040471          146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWG--LKNLCVSKAHKLK  223 (340)
Q Consensus       146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~--~~~~~~~~~~~L~  223 (340)
                      ...++|+.|+|+++.++......+.....++.|.|.++.+.. .-..++.+..+|+.|++.+...  +....+...-+|.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            346788888888877654333344566777788777765411 1133456677888888887532  2222333345566


Q ss_pred             eEEecc
Q 040471          224 KLAIYT  229 (340)
Q Consensus       224 ~L~i~~  229 (340)
                      .|.+-.
T Consensus       350 ~l~l~~  355 (498)
T KOG4237|consen  350 TLNLLS  355 (498)
T ss_pred             eeehcc
Confidence            666544

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=80.86  E-value=1.6  Score=41.10  Aligned_cols=62  Identities=16%  Similarity=0.196  Sum_probs=42.0

Q ss_pred             ccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCC--cccccc--cCCCCceEEecccc
Q 040471          170 IRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGL--KNLCVS--KAHKLKKLAIYTFY  231 (340)
Q Consensus       170 ~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~~--~~~~L~~L~i~~~~  231 (340)
                      .++|.+..++|++++. ..+++..+....|+|..|+|++....  ....+.  +...|++|-+.|++
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP  281 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP  281 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence            4678888888888888 77788888888888888888876221  111111  23556666666655

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=80.15  E-value=1.3  Score=31.63  Aligned_cols=26  Identities=31%  Similarity=0.439  Sum_probs=23.1

Q ss_pred             CccCCCchhHHHHHhcCCchhhhhhh
Q 040471            8 DRITELPTFIIHHIMSYLSAKEIART   33 (340)
Q Consensus         8 d~i~~LPd~il~~Ifs~L~~~d~~~~   33 (340)
                      ..|..||.||-..|+++|+-+|+...
T Consensus        70 ~~w~~LP~EIk~~Il~~L~~~dL~~l   95 (97)
T PF09372_consen   70 NYWNILPIEIKYKILEYLSNKDLKKL   95 (97)
T ss_pred             CchhhCCHHHHHHHHHcCCHHHHHHH
Confidence            56999999999999999999998643

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	6e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-04
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	3e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	5e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 51/308 (16%), Positives = 95/308 (30%), Gaps = 49/308 (15%)

Query: 10  ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKAITLMDISD 69
              LP  ++  I S L   E+ + S + KRW        + +                  
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLT------------- 55

Query: 70  EKKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMV 129
            K     V   L     + FR     + Q   +      +               + L  
Sbjct: 56  GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQ-------------HMDLSN 102

Query: 130 HNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY-INDQ 188
             +       IL Q       +  LSL G R+  P   T  +  +L +L L      ++ 
Sbjct: 103 SVIEVSTLHGILSQ----CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158

Query: 189 MFQKLTNECPSLEDFEISACW-----GLKNLCVSKAHKLKKLAIYTFYKDI---GIVEIV 240
             Q L + C  L++  +S C+      ++      +  + +L +  + K++    +  +V
Sbjct: 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218

Query: 241 V--PSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNS 298
              P+L   L L+    +  +  +   +   L+ L L  C       I    L       
Sbjct: 219 RRCPNL-VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY-----DIIPETLL--ELGE 270

Query: 299 CENLKAID 306
              LK + 
Sbjct: 271 IPTLKTLQ 278

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 46/347 (13%), Positives = 114/347 (32%), Gaps = 52/347 (14%)

Query: 8   DRITELPTFIIHHIMSYL-SAKEIARTSILSKRWC-LFCISFPILEFDQCYFLG------ 59
                 P  ++ H+ S++   K+    S++ K W  +       +    CY +       
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 60  --KAITLMDISDEKKF----------MAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSA 107
               +  +++  +  F            +V   +         ++E+RL +  +      
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123

Query: 108 PLLDKWIGLAVDNGIKDLVLM-VHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSD 166
            +   +         K LVL      + +    I      + +++  L L    ++  S 
Sbjct: 124 LIAKSFKNF------KVLVLSSCEGFSTDGLAAIAA----TCRNLKELDLRESDVDDVSG 173

Query: 167 TT----TIRLDSLKKLTLENVY--INDQMFQKLTNECPSLEDFEISACWGLKNLC--VSK 218
                      SL  L +  +   ++    ++L   CP+L+  +++    L+ L   + +
Sbjct: 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR 233

Query: 219 AHKLKKLAIYTFYKDIG-----IVEIVVPSLQQQLMLTSVWFM-DEEFDRFISKFPLLED 272
           A +L++L    +  ++       + + +   ++   L+  W           S    L  
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 273 LLLRFCRLPEK--VKISSN--QLKNLHFNSC---ENLKAIDTDTPNL 312
           L L +  +     VK+     +L+ L          L+ + +   +L
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDL 340

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.3 bits (94), Expect = 8e-04
 Identities = 25/161 (15%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 171 RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACW-----GLKNLCVSKAHKLKKL 225
               L+++ L+ + + D   + +     + +   +S+C      GL  +  +    LK+L
Sbjct: 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKEL 161

Query: 226 AIYTFYKDIGIVEIVVPSLQQQLMLTSVWFM-------DEEFDRFISKFPLLEDLLLRFC 278
            +     D      +         L S+              +R +++ P L+ L L   
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221

Query: 279 RLPEKVKISSNQLKNL-HFNSCENLKAIDTDTPNLLSFTFS 318
              EK+     +   L    +      +  D  + LS   S
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 17/181 (9%)

Query: 149 KSMATLSLFGCRMEQPSDTTTIRL-DSLKKLTLENVY------INDQMFQKLTNECPSLE 201
           + + TL +      +        L      L + N Y      I+ +  + +   C SL 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 202 DFEISACWGLKNLCV-SKAHKLKKLAIYTFYKDIGIVEIVVPSLQ-QQLMLTSVWFM-DE 258
             ++     L+ +     A  L++    +  +DIG+ E  +  +  ++L    + +M   
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 259 EFDRFISKFPLLEDLLLRFCRL--PEKVKISSN--QLKNLHFNSC---ENLKAIDTDTPN 311
           E          +  L L +  L   +   +      L+ L   +      L+ +      
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 312 L 312
           L
Sbjct: 344 L 344

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 47/308 (15%), Positives = 90/308 (29%), Gaps = 105/308 (34%)

Query: 62  ITLMDISDEKKFMAFVDASLFRFCKL----RFRMQELRLFQSFLDVKGSA-----PLLDK 112
           + L+++ + K + AF + S    CK+    RF+           D   +A      L   
Sbjct: 248 LVLLNVQNAKAWNAF-NLS----CKILLTTRFK--------QVTDFLSAATTTHISLDHH 294

Query: 113 WIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRL 172
            + L  D   K L+L   +   +D    LP+ + +      LS+    +           
Sbjct: 295 SMTLTPDEV-KSLLLKYLDCRPQD----LPREVLTTNPRR-LSIIAESIRDGLA----TW 344

Query: 173 DSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYK 232
           D+ K +  + +     + +   N    LE  E    +              +L++  F  
Sbjct: 345 DNWKHVNCDKL---TTIIESSLN---VLEPAEYRKMF-------------DRLSV--FPP 383

Query: 233 DIGIVEIVVPSLQQQLMLTSVWF-MDEEFDRFI----SKFPLLE-----------DLLLR 276
              I  I+         L+ +WF + +     +     K+ L+E            + L 
Sbjct: 384 SAHIPTIL---------LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 277 FCRLPEKVK------ISS-NQLKNL--------------------HFNSCENLKAIDTDT 309
                E         +   N  K                      H  + E+ + +    
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 310 PNLLSFTF 317
              L F F
Sbjct: 495 MVFLDFRF 502

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 43.2 bits (101), Expect = 6e-05
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 10 ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFC 44
          +T LP  +  +I+S+LS  ++ +    +  W    
Sbjct: 5  LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETV 39

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 4   AKGMDRITELPTFIIHHIMSYLSAKEIARTSIL-SKRWCLFCISFPILEFDQCYFLGKAI 62
           A+ ++ + ELP  ++  +++ L A E+ +   L   RW    +    L   +C   G   
Sbjct: 45  AEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWK-ELVDGAPLWLLKCQQEGLVP 103

Query: 63  TLMDISDEKKFMAFVDASLFRFCKLR 88
                 +   +  F   S  R   LR
Sbjct: 104 EGSADEERDHWQQFYFLSKRRRNLLR 129

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 8  DRITELPTFIIHHIMSYLSAKEIARTSILSKRWC 41
          D IT LP  I   I +YL  ++I  +  +S+ W 
Sbjct: 13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWN 46

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 10 ITELPTFIIHHIMSYLSAKEIARTSILSKRW 40
             LP  ++  I S L   E+ + S + KRW
Sbjct: 9  WDSLPDELLLGIFSCLCLPELLKVSGVCKRW 39

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.54
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.3
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.29
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.23
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.2
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.2
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.2
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.17
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.11
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.1
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.1
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.1
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.1
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.1
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.1
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.03
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.02
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.02
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.02
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.01
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.01
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.0
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.0
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.0
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.99
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.99
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.99
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.98
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.98
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.97
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.97
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.94
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.93
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.89
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.85
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.75
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.65
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.64
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.59
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.55
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.51
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.4
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.37
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.35
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.31
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.31
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.3
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.24
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.2
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.2
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.17
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.17
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.15
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.01
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.01
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.95
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.94
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.87
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.85
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.04
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.89
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.37
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.24
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.9
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.83
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	93.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.64

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.93  E-value=1.9e-26  Score=205.88  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=35.6

Q ss_pred             CCccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471            7 MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus         7 ~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      ...|++||||++.+||+||+.+|+.+++.|||+|+++..
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHT
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            456999999999999999999999999999999999853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=2.9e-23  Score=199.08  Aligned_cols=276  Identities=16%  Similarity=0.221  Sum_probs=158.6

Q ss_pred             cCCccCCCchhHHHHHhcCCc-hhhhhhhhcccccchhhhc-ccceEEEeccccccc--------cccccCcc-------
Q 040471            6 GMDRITELPTFIIHHIMSYLS-AKEIARTSILSKRWCLFCI-SFPILEFDQCYFLGK--------AITLMDIS-------   68 (340)
Q Consensus         6 ~~d~i~~LPd~il~~Ifs~L~-~~d~~~~s~vskrW~~l~~-~~~~l~~~~~~~~~~--------~~~~~~~~-------   68 (340)
                      ..|+|+.|||||+.+||+||+ .+|+.+++.|||||+++.. ....+.+........        .-..+++.       
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~   81 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD   81 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence            358999999999999999999 9999999999999998721 112222221100000        00000000       


Q ss_pred             ------hh-hHHHHHHHHHHHhhhccCcccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccC
Q 040471           69 ------DE-KKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCIL  141 (340)
Q Consensus        69 ------~~-~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l  141 (340)
                            .+ ......+..+.    ...+.++++.+....    .....+.....  ..+++++|++..|...   ....+
T Consensus        82 ~~l~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~~----~~~~~~~~l~~--~~~~L~~L~L~~~~~~---~~~~l  148 (594)
T 2p1m_B           82 FNLVPDGWGGYVYPWIEAMS----SSYTWLEEIRLKRMV----VTDDCLELIAK--SFKNFKVLVLSSCEGF---STDGL  148 (594)
T ss_dssp             GTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESCB----CCHHHHHHHHH--HCTTCCEEEEESCEEE---EHHHH
T ss_pred             cccccccccchhhHHHHHHH----HhCCCCCeEEeeCcE----EcHHHHHHHHH--hCCCCcEEeCCCcCCC---CHHHH
Confidence                  00 00011122222    122578888876431    22212221111  2478999999776321   23345


Q ss_pred             CccccCCCCccEEEeeceeCCCCCC----cccccCcccceEecceEe--eChHHHHHHHhcCCCCcEEEecccCCCccc-
Q 040471          142 PQTIFSAKSMATLSLFGCRMEQPSD----TTTIRLDSLKKLTLENVY--INDQMFQKLTNECPSLEDFEISACWGLKNL-  214 (340)
Q Consensus       142 ~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-  214 (340)
                      +.....|++|++|++++|.+.....    .....+++|++|++.++.  +++..+..+...||+|++|++++|..+..+ 
T Consensus       149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~  228 (594)
T 2p1m_B          149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA  228 (594)
T ss_dssp             HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred             HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH
Confidence            5555678999999999987643221    122367899999999886  477888988888999999999998544332 


Q ss_pred             -ccccCCCCceEEeccccc--------------------------------ccceeeecCcCcceEeccCceeeccHHHH
Q 040471          215 -CVSKAHKLKKLAIYTFYK--------------------------------DIGIVEIVVPSLQQQLMLTSVWFMDEEFD  261 (340)
Q Consensus       215 -~~~~~~~L~~L~i~~~~~--------------------------------~~~~~~~~~p~L~~ll~l~~~~i~~~~~~  261 (340)
                       .+..+++|+.|.+..+..                                .+..+...+++|+.| .+.++.+++..+.
T Consensus       229 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L-~L~~~~l~~~~l~  307 (594)
T 2p1m_B          229 TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL-NLSYATVQSYDLV  307 (594)
T ss_dssp             HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEE-ECTTCCCCHHHHH
T ss_pred             HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEE-EccCCCCCHHHHH
Confidence             123456666666543310                                011111145677776 6777677777777


Q ss_pred             HHHcCCCcccEEecccCCCCccccc-----ccccccEEEee
Q 040471          262 RFISKFPLLEDLLLRFCRLPEKVKI-----SSNQLKNLHFN  297 (340)
Q Consensus       262 ~l~~~~~~L~~L~l~~c~~i~~~~~-----~~~~L~~L~l~  297 (340)
                      .++.++++|++|++++|  +++.+.     .+++|++|++.
T Consensus       308 ~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          308 KLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVF  346 (594)
T ss_dssp             HHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEe
Confidence            77778888888888776  332222     25677777773

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.90  E-value=3e-23  Score=199.00  Aligned_cols=196  Identities=13%  Similarity=0.132  Sum_probs=107.8

Q ss_pred             cccccCCccC----CCchhHHHHHhcCC-chhhhhhhhcccccchhhhcccceEEEecccccccc---------ccccCc
Q 040471            2 MYAKGMDRIT----ELPTFIIHHIMSYL-SAKEIARTSILSKRWCLFCISFPILEFDQCYFLGKA---------ITLMDI   67 (340)
Q Consensus         2 ~~~~~~d~i~----~LPd~il~~Ifs~L-~~~d~~~~s~vskrW~~l~~~~~~l~~~~~~~~~~~---------~~~~~~   67 (340)
                      |+.++.|+++    .||||++.+||+|| +.+|+.+++.|||||++++...+...+....+....         -..+++
T Consensus         1 m~~~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L   80 (592)
T 3ogk_B            1 MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKL   80 (592)
T ss_dssp             -----------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEE
T ss_pred             CCChhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEe
Confidence            5666667777    89999999999999 799999999999999987543332212111111000         000000


Q ss_pred             c-------------hhhHH-HHHHHHHHHhhhccCcccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCC
Q 040471           68 S-------------DEKKF-MAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMT  133 (340)
Q Consensus        68 ~-------------~~~~~-~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~  133 (340)
                      .             ....+ ...+..+.    ..-+.++.+.+...    .... ..-.++......++++|++..|...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~----~i~~-~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           81 KGKPRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRM----IVSD-LDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             ECSCGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESC----BCCH-HHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             cCCcchhhcccccccccccchHHHHHHH----hhCCCCCeEEeecc----EecH-HHHHHHHHhccccCcEEECcCCCCc
Confidence            0             00000 00111111    11145666666522    1122 2233444433345888888665421


Q ss_pred             CCCccccCCccccCCCCccEEEeeceeCCCCC----CcccccCcccceEecceEeeC---hHHHHHHHhcCCCCcEEEec
Q 040471          134 QEDTVCILPQTIFSAKSMATLSLFGCRMEQPS----DTTTIRLDSLKKLTLENVYIN---DQMFQKLTNECPSLEDFEIS  206 (340)
Q Consensus       134 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~~p~L~~L~l~  206 (340)
                         ....++.....|++|++|+|++|.+....    ......+++|++|++.++.++   ...+..+...||+|++|+++
T Consensus       152 ---~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~  228 (592)
T 3ogk_B          152 ---TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG  228 (592)
T ss_dssp             ---EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred             ---CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence               23344444556888899998888764321    112346788888888877763   57788888889999999888


Q ss_pred             ccC
Q 040471          207 ACW  209 (340)
Q Consensus       207 ~c~  209 (340)
                      +|.
T Consensus       229 ~~~  231 (592)
T 3ogk_B          229 DFE  231 (592)
T ss_dssp             SCB
T ss_pred             Ccc
Confidence            874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.57  E-value=1.6e-14  Score=128.18  Aligned_cols=193  Identities=18%  Similarity=0.192  Sum_probs=127.7

Q ss_pred             HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ..+++.|++..+..      ..+|..++.+++|++|+++++.+. ..+.....+++|++|+++++.++  .+...+..++
T Consensus        80 ~~~l~~L~L~~n~l------~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~  150 (328)
T 4fcg_A           80 QPGRVALELRSVPL------PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR--ALPASIASLN  150 (328)
T ss_dssp             STTCCEEEEESSCC------SSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCT
T ss_pred             ccceeEEEccCCCc------hhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc--cCcHHHhcCc
Confidence            36788888876554      477777777888888888888766 34344567888888888888764  2222356788


Q ss_pred             CCcEEEecccCCCcccc-----------cccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcC
Q 040471          199 SLEDFEISACWGLKNLC-----------VSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISK  266 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~-----------~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~  266 (340)
                      +|++|++++|.....+.           +..+++|+.|+++++. ..+......+++|+.| .+.++.+++  +...+.+
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L-~L~~N~l~~--l~~~l~~  227 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL-KIRNSPLSA--LGPAIHH  227 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEE-EEESSCCCC--CCGGGGG
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEE-EccCCCCCc--Cchhhcc
Confidence            88888888876544331           2237888888888776 2111112256677777 666665553  1122567


Q ss_pred             CCcccEEecccCCCCcccccc---cccccEEEeecCcchhhhc---cCCCCeeEEEEeccCCC
Q 040471          267 FPLLEDLLLRFCRLPEKVKIS---SNQLKNLHFNSCENLKAID---TDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       267 ~~~L~~L~l~~c~~i~~~~~~---~~~L~~L~l~~c~~l~~~~---~~~p~L~~L~~~~~~~~  323 (340)
                      +++|++|++++|...+.++..   +++|++|++++|.....+.   ...++|+.|++.++...
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  290 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL  290 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence            788888888887776655443   5788888888877653332   34688888888885443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.54  E-value=6.4e-16  Score=137.46  Aligned_cols=201  Identities=16%  Similarity=0.203  Sum_probs=139.9

Q ss_pred             HHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCC-CCcccccCcccceEecceEeeChHHH
Q 040471          112 KWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQP-SDTTTIRLDSLKKLTLENVYINDQMF  190 (340)
Q Consensus       112 ~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l  190 (340)
                      ..+.....++++.+++..+..      ...+..++.+++|++|++++|.+... .......+++|++|++.++.+++...
T Consensus        62 ~~~~~~~~~~l~~L~l~~n~l------~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~  135 (336)
T 2ast_B           62 DVTGRLLSQGVIAFRCPRSFM------DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV  135 (336)
T ss_dssp             HHHHHHHHTTCSEEECTTCEE------CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred             HHHHhhhhccceEEEcCCccc------cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence            344555557888888754432      22333456788899999988876542 22345678899999999888776666


Q ss_pred             HHHHhcCCCCcEEEecccCCCccc----ccccCCCCceEEeccc-ccc---cceeeecCc-CcceEeccCce--eeccHH
Q 040471          191 QKLTNECPSLEDFEISACWGLKNL----CVSKAHKLKKLAIYTF-YKD---IGIVEIVVP-SLQQQLMLTSV--WFMDEE  259 (340)
Q Consensus       191 ~~l~~~~p~L~~L~l~~c~~~~~~----~~~~~~~L~~L~i~~~-~~~---~~~~~~~~p-~L~~ll~l~~~--~i~~~~  259 (340)
                      ..+ ..+++|++|++++|..+...    .+..+++|++|++++| .-.   .......+| +|+.| .+.++  .+++..
T Consensus       136 ~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L-~l~~~~~~~~~~~  213 (336)
T 2ast_B          136 NTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL-NLSGYRKNLQKSD  213 (336)
T ss_dssp             HHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE-ECCSCGGGSCHHH
T ss_pred             HHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE-EeCCCcccCCHHH
Confidence            654 45899999999988666542    2345788999999888 411   222334677 88888 77777  577777


Q ss_pred             HHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCcchhh----hccCCCCeeEEEEecc
Q 040471          260 FDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENLKA----IDTDTPNLLSFTFSYD  320 (340)
Q Consensus       260 ~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~  320 (340)
                      +...+.++++|++|++++|..+++...    .+++|++|++++|..+..    ....+|+|+.|++.|.
T Consensus       214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            777788889999999998876554333    258899999988865421    1245788999998886

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.38  E-value=1.6e-13  Score=131.27  Aligned_cols=67  Identities=16%  Similarity=0.120  Sum_probs=31.3

Q ss_pred             eccHHHHHHHcCCCcccEEecccCCCCcccc-----cccccccEEEeecCcc----hhhhccCCCCeeEEEEeccCC
Q 040471          255 FMDEEFDRFISKFPLLEDLLLRFCRLPEKVK-----ISSNQLKNLHFNSCEN----LKAIDTDTPNLLSFTFSYDFN  322 (340)
Q Consensus       255 i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~-----~~~~~L~~L~l~~c~~----l~~~~~~~p~L~~L~~~~~~~  322 (340)
                      +++..+..+...+++|++|++++|. +++.+     ..+++|++|++++|.-    +..+...+|+|+.|+++++..
T Consensus       450 l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          450 LTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             CCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred             ccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence            4444455444555555555555443 32211     2245555555555541    112223345555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.37  E-value=9.5e-13  Score=116.65  Aligned_cols=216  Identities=16%  Similarity=0.171  Sum_probs=149.9

Q ss_pred             CcccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc
Q 040471           88 RFRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT  167 (340)
Q Consensus        88 ~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~  167 (340)
                      ...++.+.+......      .+...+.  ...+++.|++..+..      ..+|..+..+++|++|++++|.+. ..+.
T Consensus        80 ~~~l~~L~L~~n~l~------~lp~~l~--~l~~L~~L~L~~n~l------~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~  144 (328)
T 4fcg_A           80 QPGRVALELRSVPLP------QFPDQAF--RLSHLQHMTIDAAGL------MELPDTMQQFAGLETLTLARNPLR-ALPA  144 (328)
T ss_dssp             STTCCEEEEESSCCS------SCCSCGG--GGTTCSEEEEESSCC------CCCCSCGGGGTTCSEEEEESCCCC-CCCG
T ss_pred             ccceeEEEccCCCch------hcChhhh--hCCCCCEEECCCCCc------cchhHHHhccCCCCEEECCCCccc-cCcH
Confidence            357888888744321      1111111  136899999987765      378888889999999999999887 3445


Q ss_pred             ccccCcccceEecceEeeChHHHHHH--------HhcCCCCcEEEecccCCCccc--ccccCCCCceEEecccc-cccce
Q 040471          168 TTIRLDSLKKLTLENVYINDQMFQKL--------TNECPSLEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY-KDIGI  236 (340)
Q Consensus       168 ~~~~~~~L~~L~L~~~~~~~~~l~~l--------~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~-~~~~~  236 (340)
                      ....+++|++|++++|.........+        +..+++|++|++++|.- ..+  .+..+++|++|+++++. .....
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~  223 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGP  223 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCG
T ss_pred             HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCch
Confidence            67789999999999986521111111        23589999999999843 232  35678999999999887 22222


Q ss_pred             eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc---cccccEEEeecCcchhhhc---cCCC
Q 040471          237 VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS---SNQLKNLHFNSCENLKAID---TDTP  310 (340)
Q Consensus       237 ~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~---~~~L~~L~l~~c~~l~~~~---~~~p  310 (340)
                      ....+++|+.| .+.++.+.+.. ...+.++++|++|++++|...+.++..   +++|++|++++|..+..+.   ...+
T Consensus       224 ~l~~l~~L~~L-~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          224 AIHHLPKLEEL-DLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP  301 (328)
T ss_dssp             GGGGCTTCCEE-ECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC
T ss_pred             hhccCCCCCEE-ECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc
Confidence            22357888888 77765544321 223567899999999999887766643   6899999999998764443   3457


Q ss_pred             CeeEEEEeccC
Q 040471          311 NLLSFTFSYDF  321 (340)
Q Consensus       311 ~L~~L~~~~~~  321 (340)
                      +|+.+.+....
T Consensus       302 ~L~~l~l~~~~  312 (328)
T 4fcg_A          302 ANCIILVPPHL  312 (328)
T ss_dssp             TTCEEECCGGG
T ss_pred             CceEEeCCHHH
Confidence            88888776543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.35  E-value=1.2e-11  Score=110.33  Aligned_cols=169  Identities=12%  Similarity=0.052  Sum_probs=88.1

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCc
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLK  223 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~  223 (340)
                      +..+++|++|++++|.+...  +....+++|+.|++.++.. ..-  .. ...+++|++|++++|.......+..+++|+
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~--~~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~  180 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESKVKDVTPIANLTDLY  180 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCC--GGGTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             HcCCCcCCEEECcCCcccCc--hhhccCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCCcCCchhhccCCCCC
Confidence            44455555555555544321  1133455555555555432 110  00 344555555555555332222244456666


Q ss_pred             eEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCc
Q 040471          224 KLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCE  300 (340)
Q Consensus       224 ~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~  300 (340)
                      .|+++++. ..... ...+++|+.+ .+.++.+++...   +..+++|++|++++|.. ++.+  ..+++|++|++++|.
T Consensus       181 ~L~l~~n~l~~~~~-~~~l~~L~~L-~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          181 SLSLNYNQIEDISP-LASLTSLHYF-TAYVNQITDITP---VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             EEECTTSCCCCCGG-GGGCTTCCEE-ECCSSCCCCCGG---GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSC
T ss_pred             EEEccCCccccccc-ccCCCcccee-ecccCCCCCCch---hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCc
Confidence            66666554 11111 2244555555 555555443322   56778888888887653 3332  236788888888774


Q ss_pred             chh-hhccCCCCeeEEEEeccCCCC
Q 040471          301 NLK-AIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       301 ~l~-~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      --. ......++|+.|++.++....
T Consensus       255 l~~~~~~~~l~~L~~L~l~~n~l~~  279 (347)
T 4fmz_A          255 ISDINAVKDLTKLKMLNVGSNQISD  279 (347)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             cCCChhHhcCCCcCEEEccCCccCC
Confidence            321 122456888888888876554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.33  E-value=3.2e-12  Score=126.07  Aligned_cols=195  Identities=16%  Similarity=0.121  Sum_probs=131.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCc--cccCCCCccEEEeeceeCCCCCCccc-ccCcccceEecceEeeChHHHH--HHH
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQ--TIFSAKSMATLSLFGCRMEQPSDTTT-IRLDSLKKLTLENVYINDQMFQ--KLT  194 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~--~l~  194 (340)
                      .++++|+++.+..     ...+|.  .+..+++|++|++++|.+........ ..+++|++|+++++.++.....  ...
T Consensus       100 ~~L~~L~Ls~n~l-----~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  174 (768)
T 3rgz_A          100 ASLTSLDLSRNSL-----SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS  174 (768)
T ss_dssp             TTCCEEECCSSEE-----EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHT
T ss_pred             CCCCEEECCCCcC-----CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhh
Confidence            5788888866543     234555  77889999999999987654332222 6789999999999988432222  236


Q ss_pred             hcCCCCcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471          195 NECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL  273 (340)
Q Consensus       195 ~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L  273 (340)
                      ..+++|++|++++|.-........+++|++|+++++. .........+++|+.| .+.++.+++... ..+.++++|++|
T Consensus       175 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L-~Ls~n~l~~~~~-~~l~~l~~L~~L  252 (768)
T 3rgz_A          175 DGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL-DISGNKLSGDFS-RAISTCTELKLL  252 (768)
T ss_dssp             TCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEE-ECCSSCCCSCHH-HHTTTCSSCCEE
T ss_pred             ccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEE-ECcCCcCCCccc-HHHhcCCCCCEE
Confidence            7899999999999865444445678999999999887 2222223357888888 788777765433 346789999999


Q ss_pred             ecccCCCCccccc-ccccccEEEeecCcch----hhhccCCCCeeEEEEeccC
Q 040471          274 LLRFCRLPEKVKI-SSNQLKNLHFNSCENL----KAIDTDTPNLLSFTFSYDF  321 (340)
Q Consensus       274 ~l~~c~~i~~~~~-~~~~L~~L~l~~c~~l----~~~~~~~p~L~~L~~~~~~  321 (340)
                      ++++|...+..+. .+++|++|++.+|.-.    ..+...+++|+.|++.++.
T Consensus       253 ~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          253 NISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH  305 (768)
T ss_dssp             ECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred             ECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc
Confidence            9998865332222 3567777777766432    1111223666666666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.31  E-value=2.2e-11  Score=108.53  Aligned_cols=200  Identities=14%  Similarity=0.062  Sum_probs=106.6

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p  198 (340)
                      +++++|++..+..      ..++. +..+++|+.|++++|..... .+....+++|++|++.++.+ ....    ...++
T Consensus       110 ~~L~~L~l~~n~i------~~~~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~  177 (347)
T 4fmz_A          110 TNLRELYLNEDNI------SDISP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP----IANLT  177 (347)
T ss_dssp             TTCSEEECTTSCC------CCCGG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG----GGGCT
T ss_pred             CcCCEEECcCCcc------cCchh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh----hccCC
Confidence            5677777755443      22332 44556666666666532211 12234455555555555544 1111    33455


Q ss_pred             CCcEEEecccC----------------------CCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceee
Q 040471          199 SLEDFEISACW----------------------GLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWF  255 (340)
Q Consensus       199 ~L~~L~l~~c~----------------------~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i  255 (340)
                      +|++|++++|.                      ......+..+++|+.|+++++. ..... ...+++|+.+ .+.++.+
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L-~l~~n~l  255 (347)
T 4fmz_A          178 DLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWL-EIGTNQI  255 (347)
T ss_dssp             TCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE-ECCSSCC
T ss_pred             CCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE-ECCCCcc
Confidence            55555555442                      2111123445667777776665 11111 2245667766 6666665


Q ss_pred             ccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCCcceecc
Q 040471          256 MDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPIPTIAMN  330 (340)
Q Consensus       256 ~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~~~~~~~  330 (340)
                      ++-   ..+..+++|++|++++|. +++++  ..+++|++|++++|.-.   .......|+|+.|++.++..........
T Consensus       256 ~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  331 (347)
T 4fmz_A          256 SDI---NAVKDLTKLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS  331 (347)
T ss_dssp             CCC---GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGG
T ss_pred             CCC---hhHhcCCCcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhh
Confidence            542   235677888888888764 44332  23578888888887542   1222456889999988877654212223


Q ss_pred             ccccccc
Q 040471          331 ALSMETL  337 (340)
Q Consensus       331 ~~~~~~l  337 (340)
                      .++++.|
T Consensus       332 l~~L~~L  338 (347)
T 4fmz_A          332 LSKMDSA  338 (347)
T ss_dssp             CTTCSEE
T ss_pred             hhcccee
Confidence            3445444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.30  E-value=7e-12  Score=110.30  Aligned_cols=197  Identities=11%  Similarity=-0.005  Sum_probs=129.0

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ++++.|++..+..    ....+|..+..+++|++|+++++.+....+.....+++|++|+++++.++.. +...+..+++
T Consensus        76 ~~L~~L~L~~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~  150 (313)
T 1ogq_A           76 PYLNFLYIGGINN----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPN  150 (313)
T ss_dssp             TTCSEEEEEEETT----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTT
T ss_pred             CCCCeeeCCCCCc----ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCC
Confidence            6889999875333    2346787888889999999999877543444567789999999998887321 1122467899


Q ss_pred             CcEEEecccCCCccc--ccccCC-CCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEec
Q 040471          200 LEDFEISACWGLKNL--CVSKAH-KLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLL  275 (340)
Q Consensus       200 L~~L~l~~c~~~~~~--~~~~~~-~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l  275 (340)
                      |++|+++++.--..+  .+..++ +|+.|+++++. .+...-.+...+|+.+ .+.++.+++.. ...+..+++|++|++
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L-~Ls~N~l~~~~-~~~~~~l~~L~~L~L  228 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV-DLSRNMLEGDA-SVLFGSDKNTQKIHL  228 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE-ECCSSEEEECC-GGGCCTTSCCSEEEC
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEE-ECcCCcccCcC-CHHHhcCCCCCEEEC
Confidence            999999987542121  344555 89999998876 1111111222237776 77777665432 234567899999999


Q ss_pred             ccCCCCcccc--cccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471          276 RFCRLPEKVK--ISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       276 ~~c~~i~~~~--~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      ++|..-...+  ..+++|++|+++++.-.   .......++|+.|++.++...
T Consensus       229 ~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            8776432222  23578999999887643   122245688999998886554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.29  E-value=2.4e-11  Score=106.60  Aligned_cols=186  Identities=13%  Similarity=0.098  Sum_probs=112.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|++..+..      ..++ .+..+++|+.|++++|.+...  +....+++|++|+++++.++.-  . -+..+++
T Consensus        41 ~~L~~L~l~~~~i------~~l~-~~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~  108 (308)
T 1h6u_A           41 DGITTLSAFGTGV------TTIE-GVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNV--S-AIAGLQS  108 (308)
T ss_dssp             HTCCEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCCCSCC--G-GGTTCTT
T ss_pred             CCcCEEEeeCCCc------cCch-hhhccCCCCEEEccCCcCCCC--hhHccCCCCCEEEccCCcCCCc--h-hhcCCCC
Confidence            5777777755443      2344 355677788888887766542  1256677788888887776321  1 2456778


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c  278 (340)
                      |++|++++|.--..-.+..+++|+.|+++++. ..... ...+++|+.| .+.++.+++-..   +..+++|++|++++|
T Consensus       109 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L-~l~~n~l~~~~~---l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYL-SIGNAQVSDLTP---LANLSKLTTLKADDN  183 (308)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE-ECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred             CCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEE-EccCCcCCCChh---hcCCCCCCEEECCCC
Confidence            88888877743222235566778888877765 22221 2245667776 666666554222   567788888888766


Q ss_pred             CCCcccc--cccccccEEEeecCcch--hhhccCCCCeeEEEEeccCCCC
Q 040471          279 RLPEKVK--ISSNQLKNLHFNSCENL--KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       279 ~~i~~~~--~~~~~L~~L~l~~c~~l--~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      . +++++  ..+++|++|++++|.--  .. ....|+|+.|++.++....
T Consensus       184 ~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          184 K-ISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             C-CCCCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred             c-cCcChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence            5 33332  23577888888776432  22 2345778888777765443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.29  E-value=2.3e-12  Score=123.66  Aligned_cols=83  Identities=16%  Similarity=0.260  Sum_probs=36.8

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +++++|++..+..      ..+|..+..+++|++|++++|.+..........+++|++|++.++..........+..+++
T Consensus       278 ~~L~~L~l~~n~l------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          278 SGLQELDLTATHL------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTCSEEECTTSCC------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             cCCCEEeccCCcc------CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            3455555543332      2455555555566666666555433212233345555555555543311111111234455


Q ss_pred             CcEEEeccc
Q 040471          200 LEDFEISAC  208 (340)
Q Consensus       200 L~~L~l~~c  208 (340)
                      |++|++++|
T Consensus       352 L~~L~l~~n  360 (606)
T 3t6q_A          352 LRELDLSHD  360 (606)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.25  E-value=1.5e-11  Score=108.08  Aligned_cols=176  Identities=17%  Similarity=0.120  Sum_probs=106.7

Q ss_pred             CCCCccEEEeeceeCCCCCCccc--ccCcccceEecceEeeCh--HHHHHHHh-cCCCCcEEEecccCCCcc--cccccC
Q 040471          147 SAKSMATLSLFGCRMEQPSDTTT--IRLDSLKKLTLENVYIND--QMFQKLTN-ECPSLEDFEISACWGLKN--LCVSKA  219 (340)
Q Consensus       147 ~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~--~~l~~l~~-~~p~L~~L~l~~c~~~~~--~~~~~~  219 (340)
                      .+++|++|+++++.+....+...  ..+++|++|+++++.++.  ..+..+.. ..++|++|+++++.-...  -.+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            56778888888877653332332  567788888888777732  22222221 137888888887743221  234566


Q ss_pred             CCCceEEecccc-ccc----ceee-ecCcCcceEeccCceeecc--HHHHHHHcCCCcccEEecccCCCCccccc----c
Q 040471          220 HKLKKLAIYTFY-KDI----GIVE-IVVPSLQQQLMLTSVWFMD--EEFDRFISKFPLLEDLLLRFCRLPEKVKI----S  287 (340)
Q Consensus       220 ~~L~~L~i~~~~-~~~----~~~~-~~~p~L~~ll~l~~~~i~~--~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~  287 (340)
                      ++|+.|+++++. .+.    ..+. ...++|+.| .+.++.++.  .....++.++++|++|++++|..-+..+.    .
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVL-ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE-ECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE-ECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            788888888775 111    1111 346777777 777777764  33445667788888888887664332211    2


Q ss_pred             cccccEEEeecCcchhhhccCC-CCeeEEEEeccCCCC
Q 040471          288 SNQLKNLHFNSCENLKAIDTDT-PNLLSFTFSYDFNPI  324 (340)
Q Consensus       288 ~~~L~~L~l~~c~~l~~~~~~~-p~L~~L~~~~~~~~~  324 (340)
                      .++|++|+++++.- ..+.... ++|+.|+++++....
T Consensus       252 l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~  288 (312)
T 1wwl_A          252 PSQLNSLNLSFTGL-KQVPKGLPAKLSVLDLSYNRLDR  288 (312)
T ss_dssp             CTTCCEEECTTSCC-SSCCSSCCSEEEEEECCSSCCCS
T ss_pred             cCCCCEEECCCCcc-ChhhhhccCCceEEECCCCCCCC
Confidence            47888888887753 2333222 688888888876654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.25  E-value=7.8e-12  Score=109.84  Aligned_cols=221  Identities=17%  Similarity=0.119  Sum_probs=117.0

Q ss_pred             ccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccc--cCCCCccEEEeeceeCCCCCC-
Q 040471           90 RMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTI--FSAKSMATLSLFGCRMEQPSD-  166 (340)
Q Consensus        90 ~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~-  166 (340)
                      .++++.+...    ......+..........++++|++..+..     ....|..+  ..+++|+.|+++++.+..... 
T Consensus        65 ~l~~l~l~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~  135 (310)
T 4glp_A           65 RVRRLTVGAA----QVPAQLLVGALRVLAYSRLKELTLEDLKI-----TGTMPPLPLEATGLALSSLRLRNVSWATGRSW  135 (310)
T ss_dssp             CCCEEEECSC----CCBHHHHHHHHHHHHHSCCCEEEEESCCC-----BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred             ceeEEEEeCC----cCCHHHHHHHHHhcccCceeEEEeeCCEe-----ccchhhhhhhccCCCCCEEEeecccccchhhh
Confidence            4555555422    22333455555555567799999877654     23444444  567888888888887654221 


Q ss_pred             ---cccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcc------cccccCCCCceEEecccc-cccce
Q 040471          167 ---TTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKN------LCVSKAHKLKKLAIYTFY-KDIGI  236 (340)
Q Consensus       167 ---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~------~~~~~~~~L~~L~i~~~~-~~~~~  236 (340)
                         .....+++|++|+++++.+.... ...+..+++|++|+++++.....      ..+..+++|++|+++++. .....
T Consensus       136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~  214 (310)
T 4glp_A          136 LAELQQWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG  214 (310)
T ss_dssp             HHHHHTTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred             hHHHHhhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence               11235788888888887762211 12235678888888888754321      122456778888887775 11111


Q ss_pred             e----eecCcCcceEeccCceeeccHHHHHH--HcCCCcccEEecccCCCCcccccc-cccccEEEeecCcchh-hhccC
Q 040471          237 V----EIVVPSLQQQLMLTSVWFMDEEFDRF--ISKFPLLEDLLLRFCRLPEKVKIS-SNQLKNLHFNSCENLK-AIDTD  308 (340)
Q Consensus       237 ~----~~~~p~L~~ll~l~~~~i~~~~~~~l--~~~~~~L~~L~l~~c~~i~~~~~~-~~~L~~L~l~~c~~l~-~~~~~  308 (340)
                      .    ....++|+.| +++++.+++.....+  +..+++|++|++++|. ++.++.. +++|++|+++++.--. .....
T Consensus       215 ~~~~l~~~l~~L~~L-~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~~~~  292 (310)
T 4glp_A          215 VCAALAAAGVQPHSL-DLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQPDE  292 (310)
T ss_dssp             HHHHHHHHTCCCSSE-ECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCCTTS
T ss_pred             HHHHHHhcCCCCCEE-ECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCchhhh
Confidence            1    1134555555 555544433211100  1112566666666543 3333222 2566666665553211 12233


Q ss_pred             CCCeeEEEEeccCC
Q 040471          309 TPNLLSFTFSYDFN  322 (340)
Q Consensus       309 ~p~L~~L~~~~~~~  322 (340)
                      .|+|+.|+++++..
T Consensus       293 l~~L~~L~L~~N~l  306 (310)
T 4glp_A          293 LPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCCCSCEECSSTTT
T ss_pred             CCCccEEECcCCCC
Confidence            45666666665444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.24  E-value=1.6e-11  Score=113.65  Aligned_cols=195  Identities=16%  Similarity=0.106  Sum_probs=128.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..     ....+..+..+++|++|+|+++.+..........+++|++|+|+++.++.- ....+..+++
T Consensus        99 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~  172 (452)
T 3zyi_A           99 HHLEVLQLGRNSI-----RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPS  172 (452)
T ss_dssp             TTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTT
T ss_pred             CCCCEEECCCCcc-----CCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCc
Confidence            5788888866544     122234556688889999988876543223355688899999988876311 1123567889


Q ss_pred             CcEEEecccCCCccc---ccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEec
Q 040471          200 LEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLL  275 (340)
Q Consensus       200 L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l  275 (340)
                      |++|++++|..+..+   .+..+++|+.|+++++. .... ....+++|+.| ++.++.+++... ..+.++++|++|++
T Consensus       173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L-~Ls~N~l~~~~~-~~~~~l~~L~~L~L  249 (452)
T 3zyi_A          173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEEL-EMSGNHFPEIRP-GSFHGLSSLKKLWV  249 (452)
T ss_dssp             CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEE-ECTTSCCSEECG-GGGTTCTTCCEEEC
T ss_pred             ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEE-ECcCCcCcccCc-ccccCccCCCEEEe
Confidence            999999888776655   24567889999998886 2221 12246677777 777766654322 23567899999999


Q ss_pred             ccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          276 RFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       276 ~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      ++|.. +.+..    .+++|+.|+++++.--   .......++|+.|++.++...+
T Consensus       250 ~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          250 MNSQV-SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             CCCcC-ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            97663 33322    2588999999887432   2222446889999998876443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.23  E-value=7.3e-11  Score=109.60  Aligned_cols=186  Identities=15%  Similarity=0.161  Sum_probs=111.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|++..+..      ..++. +..+++|++|++++|.+...  +....+++|++|+++++.+..-  .. ...+++
T Consensus        90 ~~L~~L~l~~n~l------~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~  157 (466)
T 1o6v_A           90 TKLVDILMNNNQI------ADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI--SA-LSGLTS  157 (466)
T ss_dssp             TTCCEEECCSSCC------CCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEEEEEEEECCC--GG-GTTCTT
T ss_pred             ccCCEEECCCCcc------ccChh-hcCCCCCCEEECCCCCCCCC--hHHcCCCCCCEEECCCCccCCC--hh-hccCCc
Confidence            4666666654433      23333 55667777777777665442  2245667777777777766321  11 456777


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c  278 (340)
                      |++|.+.++. .....+..+++|+.|+++++. .... ....+++|+.+ .+.++.+++...   +..+++|++|++++|
T Consensus       158 L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L-~l~~n~l~~~~~---~~~l~~L~~L~l~~n  231 (466)
T 1o6v_A          158 LQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL-IATNNQISDITP---LGILTNLDELSLNGN  231 (466)
T ss_dssp             CSEEEEEESC-CCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE-ECCSSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred             ccEeecCCcc-cCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEE-EecCCccccccc---ccccCCCCEEECCCC
Confidence            7777775321 111235567888888888776 2221 12356777777 666666554322   456888888888876


Q ss_pred             CCCcccc--cccccccEEEeecCcchhh-hccCCCCeeEEEEeccCCCC
Q 040471          279 RLPEKVK--ISSNQLKNLHFNSCENLKA-IDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       279 ~~i~~~~--~~~~~L~~L~l~~c~~l~~-~~~~~p~L~~L~~~~~~~~~  324 (340)
                      . +++++  ..+++|++|++++|.--.. -....++|+.|++.++....
T Consensus       232 ~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  279 (466)
T 1o6v_A          232 Q-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN  279 (466)
T ss_dssp             C-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC
T ss_pred             C-cccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc
Confidence            5 33332  2367899999888754211 13456889999998876654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.23  E-value=6.4e-11  Score=109.52  Aligned_cols=67  Identities=13%  Similarity=0.140  Sum_probs=29.8

Q ss_pred             CccccCCCCccEEEeeceeCCCCCCc--ccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc
Q 040471          142 PQTIFSAKSMATLSLFGCRMEQPSDT--TTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC  208 (340)
Q Consensus       142 ~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c  208 (340)
                      |..+..+++|++|++++|.+......  ....+++|++|+++++.++......++..+++|++|+++++
T Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            33344455555555555544321111  13345555555555555422111222344555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.23  E-value=5.6e-12  Score=120.57  Aligned_cols=77  Identities=16%  Similarity=0.196  Sum_probs=42.4

Q ss_pred             CcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc-----ccccccEEEeecCcch----hhhccCCCC
Q 040471          241 VPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI-----SSNQLKNLHFNSCENL----KAIDTDTPN  311 (340)
Q Consensus       241 ~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~-----~~~~L~~L~l~~c~~l----~~~~~~~p~  311 (340)
                      +++|+.| .+.++.+++..+..+..++++|++|++++|.. ++.+.     .+++|++|++++|...    +.+....|+
T Consensus       455 ~~~L~~L-~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~  532 (594)
T 2p1m_B          455 AKKMEML-SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPK  532 (594)
T ss_dssp             CTTCCEE-EEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTT
T ss_pred             chhccEe-eccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCC
Confidence            5556655 55555566666665556666666666666654 33222     2566666666666542    223334466


Q ss_pred             eeEEEEec
Q 040471          312 LLSFTFSY  319 (340)
Q Consensus       312 L~~L~~~~  319 (340)
                      |+...+.+
T Consensus       533 l~i~~~~~  540 (594)
T 2p1m_B          533 LNVEVIDE  540 (594)
T ss_dssp             EEEEEECS
T ss_pred             CEEEEecC
Confidence            65444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.22  E-value=2.5e-11  Score=106.95  Aligned_cols=163  Identities=18%  Similarity=0.155  Sum_probs=79.9

Q ss_pred             cCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      +++++|++..+..      ..++ ..+..+++|++|++++|.+...  .....+++|++|+++++.++.      ...++
T Consensus        34 ~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~Ls~n~l~~------l~~~~   99 (317)
T 3o53_A           34 WNVKELDLSGNPL------SQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQE------LLVGP   99 (317)
T ss_dssp             GGCSEEECTTSCC------CCCCHHHHTTCTTCCEEECTTSCCEEE--EEETTCTTCCEEECCSSEEEE------EEECT
T ss_pred             CCCCEEECcCCcc------CcCCHHHhhCCCcCCEEECCCCcCCcc--hhhhhcCCCCEEECcCCcccc------ccCCC
Confidence            4677777655443      2232 3455567777777777665321  124566777777777766521      11346


Q ss_pred             CCcEEEecccCCCcccccccCCCCceEEecccc-cccceee-ecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecc
Q 040471          199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVE-IVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLR  276 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~-~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~  276 (340)
                      +|++|+++++. +..+....+++|+.|+++++. ....... ...++|+.| .++++.+++.....+...+++|++|+++
T Consensus       100 ~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          100 SIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             TCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEE-ECCCCCCCcccHHHHhhccCcCCEEECC
Confidence            66666666653 222222334556666665554 1111111 134455554 4554444443333333345555555555


Q ss_pred             cCCCCccccc--ccccccEEEeecC
Q 040471          277 FCRLPEKVKI--SSNQLKNLHFNSC  299 (340)
Q Consensus       277 ~c~~i~~~~~--~~~~L~~L~l~~c  299 (340)
                      +|. ++.++.  .+++|++|+++++
T Consensus       178 ~N~-l~~~~~~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          178 YNF-IYDVKGQVVFAKLKTLDLSSN  201 (317)
T ss_dssp             TSC-CCEEECCCCCTTCCEEECCSS
T ss_pred             CCc-CcccccccccccCCEEECCCC
Confidence            543 222211  1345555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.22  E-value=2.8e-11  Score=111.58  Aligned_cols=193  Identities=15%  Similarity=0.117  Sum_probs=130.1

Q ss_pred             cCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ++++.|++..+..      ..++ ..+..+++|++|+|+++.+..........+++|++|+++++.++.- ....+..++
T Consensus        88 ~~L~~L~Ls~n~i------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~  160 (440)
T 3zyj_A           88 RHLEILQLSRNHI------RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIP  160 (440)
T ss_dssp             SSCCEEECCSSCC------CEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCT
T ss_pred             CCCCEEECCCCcC------CccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCc
Confidence            5788888866544      2333 4456688999999999877643323456789999999998876321 112356789


Q ss_pred             CCcEEEecccCCCccc---ccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          199 SLEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      +|++|++++|..+..+   .+.++++|+.|+++++. ..+.. ....++|+.| ++.++.+++... ..+.++++|++|+
T Consensus       161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L-~Ls~N~l~~~~~-~~~~~l~~L~~L~  237 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDEL-DLSGNHLSAIRP-GSFQGLMHLQKLW  237 (440)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEE-ECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred             ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEE-ECCCCccCccCh-hhhccCccCCEEE
Confidence            9999999988776554   34567899999999886 22211 2256677777 777766654322 2356789999999


Q ss_pred             cccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471          275 LRFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      ++++. ++.+..    .+++|+.|+++++.--   .......++|+.|++.++...
T Consensus       238 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          238 MIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            99765 443322    2588999999887432   222344688999999887654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.22  E-value=5.8e-11  Score=110.55  Aligned_cols=194  Identities=13%  Similarity=0.056  Sum_probs=101.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|++..+..     ....+..+..+++|+.|+++++.+..........+++|++|++.++.++.-. ...+..+++
T Consensus       104 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~  177 (477)
T 2id5_A          104 SNLTKLDISENKI-----VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHG  177 (477)
T ss_dssp             TTCCEEECTTSCC-----CEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTT
T ss_pred             CCCCEEECCCCcc-----ccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCC
Confidence            3555555543332     1122334445666666666665543322223456677777777777663211 223456777


Q ss_pred             CcEEEecccCCC--cccccccCCCCceEEeccccccccee---eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          200 LEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIV---EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       200 L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~---~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      |+.|++.++..-  ....+..+++|+.|+++++. ....+   ....++|+.| .+.++.++.-. ...+.++++|++|+
T Consensus       178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L-~l~~n~l~~~~-~~~~~~l~~L~~L~  254 (477)
T 2id5_A          178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP-YLDTMTPNCLYGLNLTSL-SITHCNLTAVP-YLAVRHLVYLRFLN  254 (477)
T ss_dssp             CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT-TCCEECTTTTTTCCCSEE-EEESSCCCSCC-HHHHTTCTTCCEEE
T ss_pred             CcEEeCCCCcCcEeChhhcccCcccceeeCCCCc-cccccCcccccCccccEE-ECcCCcccccC-HHHhcCccccCeeE
Confidence            777777776432  12234456777777777654 11111   1223356665 55555544322 12356677788888


Q ss_pred             cccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471          275 LRFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      +++|. ++.++.    .+++|++|++.++.--   .......++|+.|++.++...
T Consensus       255 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          255 LSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             CCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             CCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            77665 333322    2466777777665421   111223466666666665443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.21  E-value=1.3e-11  Score=108.52  Aligned_cols=199  Identities=17%  Similarity=0.110  Sum_probs=138.5

Q ss_pred             HHHHHcCccEEEEEeecCCCCCccccCCccc--cCCCCccEEEeeceeCCCCCCcccccC-----cccceEecceEeeCh
Q 040471          115 GLAVDNGIKDLVLMVHNMTQEDTVCILPQTI--FSAKSMATLSLFGCRMEQPSDTTTIRL-----DSLKKLTLENVYIND  187 (340)
Q Consensus       115 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~  187 (340)
                      ......++++|++..+..     ...+|..+  ..+++|++|+++++.+... ......+     ++|++|+++++.++.
T Consensus        90 ~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~  163 (312)
T 1wwl_A           90 RVLGISGLQELTLENLEV-----TGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN  163 (312)
T ss_dssp             HHHTTSCCCEEEEEEEBC-----BSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred             HhcCcCCccEEEccCCcc-----cchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence            333457999999988865     23566655  6689999999999987653 2333344     899999999998732


Q ss_pred             HHHHHHHhcCCCCcEEEecccCCCcc------cccccCCCCceEEecccc-ccccee----eecCcCcceEeccCceeec
Q 040471          188 QMFQKLTNECPSLEDFEISACWGLKN------LCVSKAHKLKKLAIYTFY-KDIGIV----EIVVPSLQQQLMLTSVWFM  256 (340)
Q Consensus       188 ~~l~~l~~~~p~L~~L~l~~c~~~~~------~~~~~~~~L~~L~i~~~~-~~~~~~----~~~~p~L~~ll~l~~~~i~  256 (340)
                      ... ..+..+++|++|+++++.-...      +....+++|++|+++++. .....+    ....++|+.| +++++.++
T Consensus       164 ~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~  241 (312)
T 1wwl_A          164 FSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL-DLSHNSLR  241 (312)
T ss_dssp             CCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE-ECTTSCCC
T ss_pred             chH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE-ECCCCcCC
Confidence            211 2245789999999999874332      122578999999999887 211121    1256889988 77777776


Q ss_pred             cHHHHHHHcCCCcccEEecccCCCCccccccc-ccccEEEeecCcchhhh--ccCCCCeeEEEEeccCCC
Q 040471          257 DEEFDRFISKFPLLEDLLLRFCRLPEKVKISS-NQLKNLHFNSCENLKAI--DTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       257 ~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~-~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~  323 (340)
                      +......+..+++|++|++++|. ++.++... ++|++|+++++.- ..+  ....|+|+.|++.++...
T Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l-~~~p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          242 DAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRL-DRNPSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCC-CSCCCTTTSCEEEEEECTTCTTT
T ss_pred             cccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCC-CCChhHhhCCCCCEEeccCCCCC
Confidence            64322234567999999999876 55554443 6999999998743 222  335689999999997664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.21  E-value=1.2e-10  Score=108.11  Aligned_cols=39  Identities=15%  Similarity=0.246  Sum_probs=16.8

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI  185 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  185 (340)
                      +..+++|+.|++++|.+...  +....+++|+.|++.++.+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred             hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence            33445555555555443321  1233344444444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.20  E-value=2e-11  Score=105.87  Aligned_cols=194  Identities=12%  Similarity=0.049  Sum_probs=96.6

Q ss_pred             cCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEe-eChHHHHHHHhcC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY-INDQMFQKLTNEC  197 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~  197 (340)
                      +++++|++..+..      ..++ ..+..+++|++|+++++.+..........+++|++|+++++. +..-. ...+..+
T Consensus        32 ~~l~~L~l~~n~i------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l  104 (285)
T 1ozn_A           32 AASQRIFLHGNRI------SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGL  104 (285)
T ss_dssp             TTCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTC
T ss_pred             CCceEEEeeCCcC------CccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCC
Confidence            3556666544332      2222 234456666666666665443222234456666666666664 31110 1113456


Q ss_pred             CCCcEEEecccCCCc--ccccccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471          198 PSLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL  273 (340)
Q Consensus       198 p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L  273 (340)
                      ++|++|++++|.-..  .-.+..+++|++|+++++. .....- ...+++|+.| .+.++.+++-.. ..+.++++|++|
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~-~~~~~l~~L~~L  182 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL-FLHGNRISSVPE-RAFRGLHSLDRL  182 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCEECT-TTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE-ECCCCcccccCH-HHhcCccccCEE
Confidence            666666666653221  1123445666666666654 111111 1135556665 555544432111 124456777777


Q ss_pred             ecccCCCCccc-cc---ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471          274 LLRFCRLPEKV-KI---SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       274 ~l~~c~~i~~~-~~---~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      ++++|.. +.. +.   .+++|++|+++++.--   .......++|+.|++.++...
T Consensus       183 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          183 LLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             ECCSSCC-CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ECCCCcc-cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            7776653 322 11   2467777777766432   122234577777777775543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.20  E-value=2.3e-11  Score=113.51  Aligned_cols=163  Identities=18%  Similarity=0.153  Sum_probs=77.4

Q ss_pred             CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCC
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSL  200 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  200 (340)
                      +++.|++..+..     ....|..+..+++|++|+|++|.+...  .....+++|++|+|+++.++.      ....|+|
T Consensus        35 ~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L  101 (487)
T 3oja_A           35 NVKELDLSGNPL-----SQISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQE------LLVGPSI  101 (487)
T ss_dssp             GCCEEECCSSCC-----CCCCGGGGTTCTTCCEEECTTSCCEEE--EECTTCTTCCEEECCSSEEEE------EEECTTC
T ss_pred             CccEEEeeCCcC-----CCCCHHHHhCCCCCCEEEeeCCCCCCC--cccccCCCCCEEEecCCcCCC------CCCCCCc
Confidence            566666655443     112233455566777777776655321  124456667777776666521      1123666


Q ss_pred             cEEEecccCCCcccccccCCCCceEEecccc-cccceee-ecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471          201 EDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVE-IVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       201 ~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~-~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c  278 (340)
                      +.|++++|.- ..+....+++|+.|+++++. ....... ..+++|+.| .++++.+++.....+...+++|++|++++|
T Consensus       102 ~~L~L~~N~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N  179 (487)
T 3oja_A          102 ETLHAANNNI-SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL-DLKLNEIDTVNFAELAASSDTLEHLNLQYN  179 (487)
T ss_dssp             CEEECCSSCC-CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE-ECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred             CEEECcCCcC-CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEE-ECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence            6666666532 22222234556666665554 1211111 134555554 455544444333333334555555555554


Q ss_pred             CCCccccc--ccccccEEEeecC
Q 040471          279 RLPEKVKI--SSNQLKNLHFNSC  299 (340)
Q Consensus       279 ~~i~~~~~--~~~~L~~L~l~~c  299 (340)
                      .. +.++.  .+++|+.|+++++
T Consensus       180 ~l-~~~~~~~~l~~L~~L~Ls~N  201 (487)
T 3oja_A          180 FI-YDVKGQVVFAKLKTLDLSSN  201 (487)
T ss_dssp             CC-CEEECCCCCTTCCEEECCSS
T ss_pred             cc-ccccccccCCCCCEEECCCC
Confidence            42 22211  1345555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.20  E-value=5.9e-12  Score=110.31  Aligned_cols=198  Identities=12%  Similarity=0.038  Sum_probs=123.6

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +++++|++..+...   .....+..+..+++|++|+++++.+.. .......+++|++|++.++.++.......+..+++
T Consensus        52 ~~L~~L~L~~n~l~---~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  127 (306)
T 2z66_A           52 TQLTKLSLSSNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  127 (306)
T ss_dssp             TTCSEEECCSSCCC---EEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT
T ss_pred             ccCCEEECCCCccC---cccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC
Confidence            57888888655431   111224455567888888888876543 22235578889999998887732211123567888


Q ss_pred             CcEEEecccCCCc--ccccccCCCCceEEecccccc---cceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          200 LEDFEISACWGLK--NLCVSKAHKLKKLAIYTFYKD---IGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       200 L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~~~---~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      |++|++++|..-.  .-.+..+++|+.|+++++.-.   .......+++|+.| .+.++.+++... ..+..+++|++|+
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~-~~~~~l~~L~~L~  205 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-DLSQCQLEQLSP-TAFNSLSSLQVLN  205 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE-ECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE-ECCCCCcCCcCH-HHhcCCCCCCEEE
Confidence            9999998875321  123456788999999887611   22222356778887 777766654321 2346688899999


Q ss_pred             cccCCCCccccc----ccccccEEEeecCcchhh---hccCC-CCeeEEEEeccCCCC
Q 040471          275 LRFCRLPEKVKI----SSNQLKNLHFNSCENLKA---IDTDT-PNLLSFTFSYDFNPI  324 (340)
Q Consensus       275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~---~~~~~-p~L~~L~~~~~~~~~  324 (340)
                      +++|.. +.++.    .+++|+.|+++++.-...   ..... ++|+.|++.|+....
T Consensus       206 L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          206 MSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            987763 33322    257899999988754211   11223 488999998866543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.19  E-value=2.8e-11  Score=111.96  Aligned_cols=193  Identities=14%  Similarity=0.066  Sum_probs=133.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..     ....+..+..+++|+.|+|+++.+..........+++|++|+|+++.++.- ....+..+++
T Consensus        75 ~~l~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  148 (452)
T 3zyi_A           75 SNTRYLNLMENNI-----QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSK  148 (452)
T ss_dssp             TTCSEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTT
T ss_pred             CCccEEECcCCcC-----ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCC
Confidence            4788888866554     123355567789999999999877543333556789999999999877321 1223467899


Q ss_pred             CcEEEecccCCC--cccccccCCCCceEEecccccccceee----ecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471          200 LEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIVE----IVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL  273 (340)
Q Consensus       200 L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~~----~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L  273 (340)
                      |++|+++++.--  ....+..+++|+.|+++++. ....+.    ..+++|+.| .+.++.+++-.   -+..+++|++|
T Consensus       149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L-~L~~n~l~~~~---~~~~l~~L~~L  223 (452)
T 3zyi_A          149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYL-NLGMCNIKDMP---NLTPLVGLEEL  223 (452)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEE-ECTTSCCSSCC---CCTTCTTCCEE
T ss_pred             CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEE-ECCCCcccccc---cccccccccEE
Confidence            999999988532  12235568999999999865 222222    256788888 77776665431   25678999999


Q ss_pred             ecccCCCCccc-c---cccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          274 LLRFCRLPEKV-K---ISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       274 ~l~~c~~i~~~-~---~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      ++++|.. +.+ +   ..+++|++|++.++.--   .......++|+.|++.++....
T Consensus       224 ~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          224 EMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             ECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ECcCCcC-cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            9998764 333 2   23689999999987542   1223456999999999976654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.18  E-value=2.2e-11  Score=110.27  Aligned_cols=201  Identities=13%  Similarity=0.056  Sum_probs=122.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCcc-------ccCCCCccEEEeeceeCCCCC----CcccccCcccceEecceEeeChH
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQT-------IFSAKSMATLSLFGCRMEQPS----DTTTIRLDSLKKLTLENVYINDQ  188 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~-------~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~  188 (340)
                      ++++.|++..+....  -...+|..       +..+++|++|+|++|.+....    ......+++|++|+|+++.+++.
T Consensus        60 ~~L~~L~Ls~~~~~~--l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGR--VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TTCCEEECCSCCTTS--CGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             CCccEEeCcccccCc--cccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            577888876543210  11123333       356788888888888775521    12335678888888888877543


Q ss_pred             HHHHH---HhcC---------CCCcEEEecccCCC-ccc-----ccccCCCCceEEeccccccc------ce-eeecCcC
Q 040471          189 MFQKL---TNEC---------PSLEDFEISACWGL-KNL-----CVSKAHKLKKLAIYTFYKDI------GI-VEIVVPS  243 (340)
Q Consensus       189 ~l~~l---~~~~---------p~L~~L~l~~c~~~-~~~-----~~~~~~~L~~L~i~~~~~~~------~~-~~~~~p~  243 (340)
                      ....+   +..+         ++|++|++++|.-- ..+     .+..+++|+.|++++|.-..      .. ....+++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence            33333   3333         88888888877432 111     23356788888888776211      11 1225677


Q ss_pred             cceEeccCceeeccHH---HHHHHcCCCcccEEecccCCCCccc-----cc-----ccccccEEEeecCcchh----hhc
Q 040471          244 LQQQLMLTSVWFMDEE---FDRFISKFPLLEDLLLRFCRLPEKV-----KI-----SSNQLKNLHFNSCENLK----AID  306 (340)
Q Consensus       244 L~~ll~l~~~~i~~~~---~~~l~~~~~~L~~L~l~~c~~i~~~-----~~-----~~~~L~~L~l~~c~~l~----~~~  306 (340)
                      |+.| .+.++.+++.+   +...+..+++|++|++++|. +++.     +.     .+++|++|++++|.--.    .+.
T Consensus       218 L~~L-~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          218 LKVL-DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             CCEE-ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             ccEE-ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            7777 77777777543   34456778888888888776 4332     11     16788888888875321    122


Q ss_pred             ----cCCCCeeEEEEeccCCCC
Q 040471          307 ----TDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       307 ----~~~p~L~~L~~~~~~~~~  324 (340)
                          ...|+|++|++.++....
T Consensus       296 ~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          296 TVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHhcCCCceEEEccCCcCCc
Confidence                335888888888876654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.18  E-value=1.9e-11  Score=113.24  Aligned_cols=82  Identities=17%  Similarity=0.025  Sum_probs=43.9

Q ss_pred             cCcCcceEeccCceeeccHHHHHHH----cCCCcccEEecccCCCCccc-----cc---ccccccEEEeecCcch-----
Q 040471          240 VVPSLQQQLMLTSVWFMDEEFDRFI----SKFPLLEDLLLRFCRLPEKV-----KI---SSNQLKNLHFNSCENL-----  302 (340)
Q Consensus       240 ~~p~L~~ll~l~~~~i~~~~~~~l~----~~~~~L~~L~l~~c~~i~~~-----~~---~~~~L~~L~l~~c~~l-----  302 (340)
                      .+++|+.+ .+.++.+++..+..+.    ..+++|++|++++|. +++.     +.   .+++|++|+++++.--     
T Consensus       225 ~~~~L~~L-~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          225 SKASLREL-ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HCTTCCEE-ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             hCCCccEE-eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            34566665 6666666555443322    346677777777663 4332     11   1466777777766421     


Q ss_pred             ---hhhccCCCCeeEEEEeccCCC
Q 040471          303 ---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       303 ---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                         ..+....++|+.|++.++...
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHhccCCccceeeEcCCCCCc
Confidence               111122357777777775544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.18  E-value=6.3e-11  Score=110.32  Aligned_cols=196  Identities=14%  Similarity=0.078  Sum_probs=111.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +++++|++..+..     ....|..+..+++|++|+|+++.+..........+++|++|+++++.+... ....+..+++
T Consensus        56 ~~L~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~  129 (477)
T 2id5_A           56 PHLEELELNENIV-----SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYN  129 (477)
T ss_dssp             TTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTT
T ss_pred             CCCCEEECCCCcc-----CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHcccccc
Confidence            5677777754433     122344555677777777777765442222345677777777777665211 1112356777


Q ss_pred             CcEEEecccCCC--cccccccCCCCceEEecccc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEec
Q 040471          200 LEDFEISACWGL--KNLCVSKAHKLKKLAIYTFY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLL  275 (340)
Q Consensus       200 L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l  275 (340)
                      |++|+++++...  ..-.+..+++|+.|+++++. ..... ....+++|+.+ .+.++.+..... ..+..+++|++|++
T Consensus       130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L-~l~~n~i~~~~~-~~~~~l~~L~~L~l  207 (477)
T 2id5_A          130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL-RLRHLNINAIRD-YSFKRLYRLKVLEI  207 (477)
T ss_dssp             CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE-EEESCCCCEECT-TCSCSCTTCCEEEE
T ss_pred             CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEE-eCCCCcCcEeCh-hhcccCcccceeeC
Confidence            777777766321  11234456777777777765 11111 11245666666 444444332111 12456777888888


Q ss_pred             ccCCCCcccccc---cccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471          276 RFCRLPEKVKIS---SNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       276 ~~c~~i~~~~~~---~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      ++|..++.++..   ..+|++|++++|.--   .......++|+.|+++++...
T Consensus       208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             CCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence            777665554433   347888888877431   112245688999998886654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.18  E-value=1.5e-10  Score=104.92  Aligned_cols=62  Identities=13%  Similarity=0.116  Sum_probs=26.2

Q ss_pred             cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc
Q 040471          146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC  208 (340)
Q Consensus       146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c  208 (340)
                      ..+++|++|+++++.+..........+++|++|+++++.++.-. ...+..+++|++|+++++
T Consensus       114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n  175 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSN  175 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSS
T ss_pred             cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCC
Confidence            34455555555555443211111234555555555554442100 011234455555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.17  E-value=2.3e-11  Score=107.02  Aligned_cols=216  Identities=13%  Similarity=0.033  Sum_probs=144.1

Q ss_pred             cccceEEEEE-eccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc
Q 040471           89 FRMQELRLFQ-SFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT  167 (340)
Q Consensus        89 ~~l~~l~l~~-~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~  167 (340)
                      ..++.+.+.. .... ......+      ...++++.|++..+..     ...+|..+..+++|++|+++++.+....+.
T Consensus        76 ~~L~~L~L~~~n~l~-~~~p~~l------~~l~~L~~L~Ls~n~l-----~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  143 (313)
T 1ogq_A           76 PYLNFLYIGGINNLV-GPIPPAI------AKLTQLHYLYITHTNV-----SGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             TTCSEEEEEEETTEE-SCCCGGG------GGCTTCSEEEEEEECC-----EEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             CCCCeeeCCCCCccc-ccCChhH------hcCCCCCEEECcCCee-----CCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence            5788888873 2211 1111111      1236899999988765     246788888899999999999987654455


Q ss_pred             ccccCcccceEecceEeeChHHHHHHHhcCC-CCcEEEecccCCCcc--cccccCCCCceEEecccc-c-ccceeeecCc
Q 040471          168 TTIRLDSLKKLTLENVYINDQMFQKLTNECP-SLEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY-K-DIGIVEIVVP  242 (340)
Q Consensus       168 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p-~L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~-~-~~~~~~~~~p  242 (340)
                      ....+++|++|++.++.++...... +..++ +|++|+++++.-...  ..+..++ |+.|+++++. . .........+
T Consensus       144 ~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~  221 (313)
T 1ogq_A          144 SISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred             HHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC
Confidence            6778999999999998874222222 34565 999999998853211  1344444 9999999886 2 1222223678


Q ss_pred             CcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc---ccccccEEEeecCcchhhhc--cCCCCeeEEEE
Q 040471          243 SLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI---SSNQLKNLHFNSCENLKAID--TDTPNLLSFTF  317 (340)
Q Consensus       243 ~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~---~~~~L~~L~l~~c~~l~~~~--~~~p~L~~L~~  317 (340)
                      +|+.+ .+.++.++...-.  +..+++|++|++++|...+.++.   .+++|++|+++++.-...+.  ...++|+.+++
T Consensus       222 ~L~~L-~L~~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l  298 (313)
T 1ogq_A          222 NTQKI-HLAKNSLAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAY  298 (313)
T ss_dssp             CCSEE-ECCSSEECCBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGT
T ss_pred             CCCEE-ECCCCceeeecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHh
Confidence            88888 7887777643222  57789999999998875334433   35899999999885432222  22366777777


Q ss_pred             eccC
Q 040471          318 SYDF  321 (340)
Q Consensus       318 ~~~~  321 (340)
                      .|+.
T Consensus       299 ~~N~  302 (313)
T 1ogq_A          299 ANNK  302 (313)
T ss_dssp             CSSS
T ss_pred             cCCC
Confidence            7644

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.17  E-value=4.3e-11  Score=110.32  Aligned_cols=193  Identities=10%  Similarity=0.040  Sum_probs=131.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..     ....+..+..+++|+.|+|+++.+..........+++|++|+|+++.++.-. ...+..+++
T Consensus        64 ~~l~~L~L~~n~i-----~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~  137 (440)
T 3zyj_A           64 TNTRLLNLHENQI-----QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSK  137 (440)
T ss_dssp             TTCSEEECCSCCC-----CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSS
T ss_pred             CCCcEEEccCCcC-----CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhcccc
Confidence            4778888866554     1222345667899999999998876533345567899999999998773211 123567899


Q ss_pred             CcEEEecccCCC--cccccccCCCCceEEeccccccccee----eecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471          200 LEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIV----EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL  273 (340)
Q Consensus       200 L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~----~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L  273 (340)
                      |++|+++++.--  ....+..+++|+.|+++++. ....+    ...+++|+.| .+.++.++.-.   -+..+++|++|
T Consensus       138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L-~L~~n~l~~~~---~~~~l~~L~~L  212 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYL-NLAMCNLREIP---NLTPLIKLDEL  212 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEE-ECTTSCCSSCC---CCTTCSSCCEE
T ss_pred             CceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCee-cCCCCcCcccc---ccCCCcccCEE
Confidence            999999987532  22245568999999999865 22222    2257788888 77776655321   15678999999


Q ss_pred             ecccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          274 LLRFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       274 ~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      ++++|. ++.+..    .+++|++|++.++.--   .......++|+.|++.++....
T Consensus       213 ~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          213 DLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             ECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             ECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            999875 444322    3689999999887542   1223456999999999976654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.17  E-value=1.7e-10  Score=101.16  Aligned_cols=163  Identities=16%  Similarity=0.141  Sum_probs=116.4

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ++++.|++..+..      ..++. +..+++|+.|+++++.+...  +....+++|++|+++++.++.-  .. +..+++
T Consensus        63 ~~L~~L~L~~n~i------~~~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~  130 (308)
T 1h6u_A           63 NNLIGLELKDNQI------TDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSN  130 (308)
T ss_dssp             TTCCEEECCSSCC------CCCGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTT
T ss_pred             CCCCEEEccCCcC------CCChh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCC
Confidence            6889999876654      34554 67789999999999887652  3566789999999999888331  12 677899


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c  278 (340)
                      |++|++++|.--....+..+++|+.|+++++. ..... ...+++|+.| .+.++.+++-..   +..+++|++|++++|
T Consensus       131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L-~l~~n~l~~~~~---l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL-KADDNKISDISP---LASLPNLIEVHLKNN  205 (308)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE-ECCSSCCCCCGG---GGGCTTCCEEECTTS
T ss_pred             CCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEE-ECCCCccCcChh---hcCCCCCCEEEccCC
Confidence            99999998854332235677899999999886 22222 2356788887 777777665332   677899999999987


Q ss_pred             CCCcccc-c-ccccccEEEeecCc
Q 040471          279 RLPEKVK-I-SSNQLKNLHFNSCE  300 (340)
Q Consensus       279 ~~i~~~~-~-~~~~L~~L~l~~c~  300 (340)
                      .. +++. . .+++|+.|+++++.
T Consensus       206 ~l-~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          206 QI-SDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CC-CBCGGGTTCTTCCEEEEEEEE
T ss_pred             cc-CccccccCCCCCCEEEccCCe
Confidence            64 3332 2 36889999998764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.17  E-value=1.4e-11  Score=77.72  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=34.4

Q ss_pred             cCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471            6 GMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus         6 ~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      ..+.|+.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            4467999999999999999999999999999999998754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.16  E-value=2.6e-11  Score=108.40  Aligned_cols=153  Identities=16%  Similarity=0.060  Sum_probs=76.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ++++.|++..+..     ....+..+..+++|++|+++++.+..........+++|++|+++++.++.-.....+..+++
T Consensus        76 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           76 VNLQALVLTSNGI-----NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             CCCCEEECCCCcc-----CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            4566666644432     11223334556667777776666543211123456667777776665531100012345667


Q ss_pred             CcEEEecccCCCccc---ccccCCCCceEEecccc-ccc-ceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          200 LEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDI-GIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       200 L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~-~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      |++|++++|..+..+   .+..+++|+.|+++++. ... ......+++|+.+ .+.++.++.. ...++..+++|++|+
T Consensus       151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L-~l~~n~l~~~-~~~~~~~~~~L~~L~  228 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL-ILHMKQHILL-LEIFVDVTSSVECLE  228 (353)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE-EEECSCSTTH-HHHHHHHTTTEEEEE
T ss_pred             CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee-cCCCCccccc-hhhhhhhcccccEEE
Confidence            777777666443332   33445666777766654 111 0111134455555 5555544322 122344567788888


Q ss_pred             cccCC
Q 040471          275 LRFCR  279 (340)
Q Consensus       275 l~~c~  279 (340)
                      +++|.
T Consensus       229 L~~n~  233 (353)
T 2z80_A          229 LRDTD  233 (353)
T ss_dssp             EESCB
T ss_pred             CCCCc
Confidence            77654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.14  E-value=4e-10  Score=99.70  Aligned_cols=189  Identities=16%  Similarity=0.145  Sum_probs=102.5

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +++++|++..+..     ....|..+..+++|++|+++++.+...   ....+++|++|++.++.++.-. ...+..+++
T Consensus        76 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~~l---~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~  146 (330)
T 1xku_A           76 KNLHTLILINNKI-----SKISPGAFAPLVKLERLYLSKNQLKEL---PEKMPKTLQELRVHENEITKVR-KSVFNGLNQ  146 (330)
T ss_dssp             TTCCEEECCSSCC-----CCBCTTTTTTCTTCCEEECCSSCCSBC---CSSCCTTCCEEECCSSCCCBBC-HHHHTTCTT
T ss_pred             CCCCEEECCCCcC-----CeeCHHHhcCCCCCCEEECCCCcCCcc---ChhhcccccEEECCCCcccccC-HhHhcCCcc
Confidence            5778888765544     122355666778888888888766431   1112377888888877763221 233566788


Q ss_pred             CcEEEecccCC----CcccccccCCCCceEEecccccccceeee-cCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          200 LEDFEISACWG----LKNLCVSKAHKLKKLAIYTFYKDIGIVEI-VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       200 L~~L~l~~c~~----~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      |+.|+++++..    .....+..+++|+.|+++++.  +..+.. ..++|+.+ .+.++.+++... ..+.++++|++|+
T Consensus       147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~~~~~~~L~~L-~l~~n~l~~~~~-~~~~~l~~L~~L~  222 (330)
T 1xku_A          147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN--ITTIPQGLPPSLTEL-HLDGNKITKVDA-ASLKGLNNLAKLG  222 (330)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCCSSCCTTCSEE-ECTTSCCCEECT-GGGTTCTTCCEEE
T ss_pred             ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc--cccCCccccccCCEE-ECCCCcCCccCH-HHhcCCCCCCEEE
Confidence            88888887643    122234556777777777665  111111 12556665 555544443211 1234566666666


Q ss_pred             cccCCCCccccc----ccccccEEEeecCcchhhh---ccCCCCeeEEEEeccCCC
Q 040471          275 LRFCRLPEKVKI----SSNQLKNLHFNSCENLKAI---DTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~  323 (340)
                      +++|. ++.++.    .+++|++|++++|.- ..+   ....++|+.|++.++...
T Consensus       223 Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          223 LSFNS-ISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CCSSC-CCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCCc-CceeChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCcCC
Confidence            66554 222221    245666666665532 111   123455666666654443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.14  E-value=1.8e-10  Score=111.15  Aligned_cols=175  Identities=11%  Similarity=0.053  Sum_probs=113.8

Q ss_pred             cCccEEEEEeecCCCC-----Cccc-------cCCcccc--CCCCccEEEeeceeCCCCCCcccccCcccceEecceEe-
Q 040471          120 NGIKDLVLMVHNMTQE-----DTVC-------ILPQTIF--SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY-  184 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~-----~~~~-------~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-  184 (340)
                      .++++|++..+.....     +...       .+|..+.  .+++|++|++++|.+....+.....+++|++|+++++. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            6899999987764100     0000       1898888  89999999999998765555567789999999999998 


Q ss_pred             eCh-HHHHHHH-----hcCCCCcEEEecccCCCccc----ccccCCCCceEEecccc-c-ccceeeecCcCcceEeccCc
Q 040471          185 IND-QMFQKLT-----NECPSLEDFEISACWGLKNL----CVSKAHKLKKLAIYTFY-K-DIGIVEIVVPSLQQQLMLTS  252 (340)
Q Consensus       185 ~~~-~~l~~l~-----~~~p~L~~L~l~~c~~~~~~----~~~~~~~L~~L~i~~~~-~-~~~~~~~~~p~L~~ll~l~~  252 (340)
                      ++. .....+.     ..+++|++|++++|.-- .+    .+..+++|+.|+++++. . .+. .....++|+.| .+.+
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L-~L~~  362 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL-NLAY  362 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE-ECCS
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE-ECCC
Confidence            665 2222222     34699999999998543 32    35567899999999876 2 222 12245566666 6666


Q ss_pred             eeeccHHHHHHHcCCCc-ccEEecccCCCCcccccc-----cccccEEEeecCc
Q 040471          253 VWFMDEEFDRFISKFPL-LEDLLLRFCRLPEKVKIS-----SNQLKNLHFNSCE  300 (340)
Q Consensus       253 ~~i~~~~~~~l~~~~~~-L~~L~l~~c~~i~~~~~~-----~~~L~~L~l~~c~  300 (340)
                      +.++  .+...+.++++ |++|++++|. ++.++..     +++|+.|+++++.
T Consensus       363 N~l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          363 NQIT--EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             SEEE--ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             Cccc--cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCc
Confidence            6555  22222455666 7777777665 3333322     2356666666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.14  E-value=3.7e-11  Score=105.17  Aligned_cols=172  Identities=15%  Similarity=0.116  Sum_probs=85.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCC-cccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .++++|++..+..      ..+|..+..+++|++|+++++.+..... .....+++|++|+++++.++.. ....+..++
T Consensus        78 ~~L~~L~Ls~n~i------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~  150 (306)
T 2z66_A           78 TSLKYLDLSFNGV------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLS  150 (306)
T ss_dssp             SCCCEEECCSCSE------EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCT
T ss_pred             cccCEEECCCCcc------ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCc
Confidence            5666666654433      3455555566667777776665433111 2344566677777666654211 111234566


Q ss_pred             CCcEEEecccCCCc---ccccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471          199 SLEDFEISACWGLK---NLCVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL  273 (340)
Q Consensus       199 ~L~~L~l~~c~~~~---~~~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L  273 (340)
                      +|++|+++++....   ...+..+++|+.|+++++. .... .....+++|+.| .+.++.+++.... .+.++++|++|
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~-~~~~l~~L~~L  228 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL-NMSHNNFFSLDTF-PYKCLNSLQVL  228 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECTTSCCSBCCSG-GGTTCTTCCEE
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE-ECCCCccCccChh-hccCcccCCEe
Confidence            67777766653221   1123445666777766654 1111 111134566665 5555554432111 13456667777


Q ss_pred             ecccCCCCccccc---cc-ccccEEEeecCc
Q 040471          274 LLRFCRLPEKVKI---SS-NQLKNLHFNSCE  300 (340)
Q Consensus       274 ~l~~c~~i~~~~~---~~-~~L~~L~l~~c~  300 (340)
                      ++++|...+..+.   .+ ++|++|+++++.
T Consensus       229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            7766543222111   12 366666666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.14  E-value=3.6e-11  Score=107.51  Aligned_cols=171  Identities=13%  Similarity=0.109  Sum_probs=115.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      +++++|++..+..      ..++. .+..+++|++|+++++.+..........+++|++|+++++.++.- ....+..++
T Consensus        52 ~~L~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~  124 (353)
T 2z80_A           52 EAVKSLDLSNNRI------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLS  124 (353)
T ss_dssp             TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCT
T ss_pred             ccCcEEECCCCcC------cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCc
Confidence            4788998866544      34444 567799999999999887543333466789999999999988421 123457799


Q ss_pred             CCcEEEecccCCC--cc-cccccCCCCceEEecccc--cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccE
Q 040471          199 SLEDFEISACWGL--KN-LCVSKAHKLKKLAIYTFY--KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLED  272 (340)
Q Consensus       199 ~L~~L~l~~c~~~--~~-~~~~~~~~L~~L~i~~~~--~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~  272 (340)
                      +|++|+++++.-.  .. -.+..+++|+.|+++++.  ..... ....+++|+.+ .+.++.+++.. ...+..+++|++
T Consensus       125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~-~~~l~~l~~L~~  202 (353)
T 2z80_A          125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL-EIDASDLQSYE-PKSLKSIQNVSH  202 (353)
T ss_dssp             TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE-EEEETTCCEEC-TTTTTTCSEEEE
T ss_pred             cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE-ECCCCCcCccC-HHHHhccccCCe
Confidence            9999999988432  22 235568999999999874  11111 11246677776 55555544321 223567899999


Q ss_pred             EecccCCCCccccc----ccccccEEEeecCc
Q 040471          273 LLLRFCRLPEKVKI----SSNQLKNLHFNSCE  300 (340)
Q Consensus       273 L~l~~c~~i~~~~~----~~~~L~~L~l~~c~  300 (340)
                      |+++++. ++.++.    .+++|++|+++++.
T Consensus       203 L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          203 LILHMKQ-HILLLEIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             EEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred             ecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence            9999876 444333    25788888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.14  E-value=2.4e-10  Score=103.59  Aligned_cols=192  Identities=14%  Similarity=0.011  Sum_probs=121.3

Q ss_pred             HcCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcC
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNEC  197 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~  197 (340)
                      .+++++|++..+..      ..++ ..+..+++|++|+++++.+..........+++|++|++.++.++. -...++..+
T Consensus        68 l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l  140 (390)
T 3o6n_A           68 FRQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNT  140 (390)
T ss_dssp             CCCCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTC
T ss_pred             cccCcEEECCCCcc------cccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCC
Confidence            37899999866544      2333 356678999999999998765333445789999999999988741 112234678


Q ss_pred             CCCcEEEecccCCC--cccccccCCCCceEEecccccccceee-ecCcCcceE------------------eccCceeec
Q 040471          198 PSLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIVE-IVVPSLQQQ------------------LMLTSVWFM  256 (340)
Q Consensus       198 p~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~p~L~~l------------------l~l~~~~i~  256 (340)
                      ++|++|+++++.--  ..-.+..+++|+.|+++++.  +..+. ...++|+.+                  +.+.++.++
T Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  218 (390)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred             CCCcEEECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence            99999999988532  22235567899999999876  11111 123444444                  133333322


Q ss_pred             cHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          257 DEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       257 ~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      ...    ....++|++|++++|.. ++..  ..+++|++|+++++.--   .......++|+.|++.++....
T Consensus       219 ~~~----~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (390)
T 3o6n_A          219 VVR----GPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  286 (390)
T ss_dssp             EEE----CCCCSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE
T ss_pred             ecc----ccccccccEEECCCCCC-cccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc
Confidence            210    12246777777776653 2222  12578888888887532   1223456889999998876553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.13  E-value=4.5e-10  Score=91.75  Aligned_cols=146  Identities=16%  Similarity=0.079  Sum_probs=75.9

Q ss_pred             CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccccccCCCCceE
Q 040471          148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCVSKAHKLKKL  225 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~~~~~~L~~L  225 (340)
                      +++|++|+++++.+.. . +....+++|++|++.++.+++-  . .+..+++|++|++++|.--.  .-.+..+++|+.|
T Consensus        43 l~~L~~L~l~~n~i~~-l-~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-L-TGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCSC-C-TTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCccC-h-HHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            4455555555554432 1 1334455555555555543211  0 13445666666666543211  1123345666666


Q ss_pred             EecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc--ccccccEEEeecCcchh
Q 040471          226 AIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI--SSNQLKNLHFNSCENLK  303 (340)
Q Consensus       226 ~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~--~~~~L~~L~l~~c~~l~  303 (340)
                      +++++.                       +++... ..+..+++|++|++++|..+++++.  .+++|++|++++|.--.
T Consensus       118 ~Ls~n~-----------------------i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          118 DISHSA-----------------------HDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             ECCSSB-----------------------CBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred             EecCCc-----------------------cCcHhH-HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence            666554                       333222 2345677888888877765555432  25777888877764321


Q ss_pred             -hhccCCCCeeEEEEeccCC
Q 040471          304 -AIDTDTPNLLSFTFSYDFN  322 (340)
Q Consensus       304 -~~~~~~p~L~~L~~~~~~~  322 (340)
                       ......|+|+.|++.|+..
T Consensus       174 ~~~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          174 YRGIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CTTGGGCSSCCEEEECBC--
T ss_pred             hHHhccCCCCCEEEeeCccc
Confidence             1223458888888887654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.12  E-value=2.9e-10  Score=108.86  Aligned_cols=62  Identities=13%  Similarity=0.116  Sum_probs=29.5

Q ss_pred             cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEeccc
Q 040471          146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISAC  208 (340)
Q Consensus       146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c  208 (340)
                      ..+++|++|+|++|.+..........+++|++|+++++.++.-. ...+..+++|+.|++++|
T Consensus       120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTS
T ss_pred             cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCC
Confidence            44556666666665544311112245566666666655542110 111334556666666554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.12  E-value=2.9e-11  Score=112.02  Aligned_cols=225  Identities=16%  Similarity=0.137  Sum_probs=150.4

Q ss_pred             cccceEEEEEeccCcCCChhhHHHHHH-HHHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc
Q 040471           89 FRMQELRLFQSFLDVKGSAPLLDKWIG-LAVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT  167 (340)
Q Consensus        89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~-~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~  167 (340)
                      +.++.+.+...    ....   ..|.. ....+++++|++..+... ......++..+..+++|++|+++++.+......
T Consensus         3 ~~l~~L~Ls~~----~l~~---~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~   74 (461)
T 1z7x_W            3 LDIQSLDIQCE----ELSD---ARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAELNLRSNELGDVGVH   74 (461)
T ss_dssp             EEEEEEEEESC----CCCH---HHHHHHHHHHTTCSEEEEESSCCC-HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             ccceehhhhhc----ccCc---hhHHHHHhhcCCccEEEccCCCCC-HHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH
Confidence            45677777533    1222   22433 334479999999877651 011235677778899999999999876431111


Q ss_pred             -ccccCc----ccceEecceEeeChH---HHHHHHhcCCCCcEEEecccCCCcccc--------cccCCCCceEEecccc
Q 040471          168 -TTIRLD----SLKKLTLENVYINDQ---MFQKLTNECPSLEDFEISACWGLKNLC--------VSKAHKLKKLAIYTFY  231 (340)
Q Consensus       168 -~~~~~~----~L~~L~L~~~~~~~~---~l~~l~~~~p~L~~L~l~~c~~~~~~~--------~~~~~~L~~L~i~~~~  231 (340)
                       ....++    +|++|++.++.+++.   .+...+..+++|++|++++|. +....        ....++|++|++++|.
T Consensus        75 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           75 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence             122344    799999999998654   455556789999999999986 33211        1124579999999986


Q ss_pred             ccc------ceeeecCcCcceEeccCceeeccHHHHHHHc----CCCcccEEecccCCCCcccc-----c---ccccccE
Q 040471          232 KDI------GIVEIVVPSLQQQLMLTSVWFMDEEFDRFIS----KFPLLEDLLLRFCRLPEKVK-----I---SSNQLKN  293 (340)
Q Consensus       232 ~~~------~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~c~~i~~~~-----~---~~~~L~~  293 (340)
                      -..      ......+++|+.+ .+.++.+++.....+..    ..++|++|++++|. +++.+     .   .+++|++
T Consensus       154 l~~~~~~~l~~~l~~~~~L~~L-~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~  231 (461)
T 1z7x_W          154 LSAASCEPLASVLRAKPDFKEL-TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRE  231 (461)
T ss_dssp             CBGGGHHHHHHHHHHCTTCCEE-ECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCE
T ss_pred             CCHHHHHHHHHHHhhCCCCCEE-ECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccE
Confidence            111      1111246899998 88888888776655543    46799999999885 44432     1   2689999


Q ss_pred             EEeecCcch--------hhhccCCCCeeEEEEeccCCCC
Q 040471          294 LHFNSCENL--------KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       294 L~l~~c~~l--------~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      |++++|.--        ..+....++|+.|++.++....
T Consensus       232 L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             EeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            999998521        1222357999999999976653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.11  E-value=1.8e-10  Score=109.46  Aligned_cols=195  Identities=14%  Similarity=0.101  Sum_probs=95.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc--------------------ccccCcccceEe
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT--------------------TTIRLDSLKKLT  179 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--------------------~~~~~~~L~~L~  179 (340)
                      +++++|++..+..      ..+|..+..+ +|++|++++|.+.. ...                    ....+++|++|+
T Consensus       282 ~~L~~L~l~~~~l------~~l~~~~~~~-~L~~L~l~~n~~~~-l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~  353 (570)
T 2z63_A          282 TNVSSFSLVSVTI------ERVKDFSYNF-GWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD  353 (570)
T ss_dssp             TTCSEEEEESCEE------CSCCBCCSCC-CCSEEEEESCBCSS-CCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred             CcccEEEecCccc------hhhhhhhccC-CccEEeeccCcccc-cCcccccccCEEeCcCCccccccccccCCCCCEEe
Confidence            5677777755433      3456555555 66666666665442 111                    002344555555


Q ss_pred             cceEeeChH-HHHHHHhcCCCCcEEEecccCCCccc-ccccCCCCceEEecccc-cccc--eeeecCcCcceEeccCcee
Q 040471          180 LENVYINDQ-MFQKLTNECPSLEDFEISACWGLKNL-CVSKAHKLKKLAIYTFY-KDIG--IVEIVVPSLQQQLMLTSVW  254 (340)
Q Consensus       180 L~~~~~~~~-~l~~l~~~~p~L~~L~l~~c~~~~~~-~~~~~~~L~~L~i~~~~-~~~~--~~~~~~p~L~~ll~l~~~~  254 (340)
                      ++++.++.. ........+++|++|++++|...... .+..+++|+.|+++++. ....  .....+++|+.+ .+.++.
T Consensus       354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~  432 (570)
T 2z63_A          354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL-DISHTH  432 (570)
T ss_dssp             CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE-ECTTSC
T ss_pred             CcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE-eCcCCc
Confidence            554443111 01112334555555555554321110 13345566666665554 1111  111234555555 555444


Q ss_pred             eccHHHHHHHcCCCcccEEecccCCCCc-ccc---cccccccEEEeecCcchh---hhccCCCCeeEEEEeccCCCC
Q 040471          255 FMDEEFDRFISKFPLLEDLLLRFCRLPE-KVK---ISSNQLKNLHFNSCENLK---AIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       255 i~~~~~~~l~~~~~~L~~L~l~~c~~i~-~~~---~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      +.+.. ...+.++++|++|++++|...+ .++   ..+++|++|++++|.-..   ......++|+.|++.++....
T Consensus       433 l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          433 TRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             CEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence            33321 1234556777777777665321 122   225778888887775321   112345788888888765543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.11  E-value=1.7e-11  Score=120.79  Aligned_cols=196  Identities=16%  Similarity=0.013  Sum_probs=135.4

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc--ccccCcccceEecceEeeChHHHHHHHhcC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT--TTIRLDSLKKLTLENVYINDQMFQKLTNEC  197 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~  197 (340)
                      .++++|++......   +...+|..+..+++|++|+|++|.+....+.  ....+++|++|+++++.++......+...+
T Consensus        74 ~~L~~L~~l~~~~~---~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l  150 (768)
T 3rgz_A           74 LSLTGLESLFLSNS---HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL  150 (768)
T ss_dssp             TTCTTCCEEECTTS---CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred             hccCcccccCCcCC---CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccC
Confidence            34555555333221   2345677888899999999999887543333  567899999999999987432222233678


Q ss_pred             CCCcEEEecccCCCccc--c---cccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCccc
Q 040471          198 PSLEDFEISACWGLKNL--C---VSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLE  271 (340)
Q Consensus       198 p~L~~L~l~~c~~~~~~--~---~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~  271 (340)
                      ++|++|++++|.-....  .   +.++++|++|+++++. .+... ...+++|+.+ ++.++.+++..-.  +.++++|+
T Consensus       151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L-~Ls~n~l~~~~~~--l~~l~~L~  226 (768)
T 3rgz_A          151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFL-DVSSNNFSTGIPF--LGDCSALQ  226 (768)
T ss_dssp             TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEE-ECCSSCCCSCCCB--CTTCCSCC
T ss_pred             CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEE-ECcCCcCCCCCcc--cccCCCCC
Confidence            99999999998543221  1   5678999999999887 22111 1467889988 7777776543222  67899999


Q ss_pred             EEecccCCCCcccc---cccccccEEEeecCcchhhhc-cCCCCeeEEEEeccCC
Q 040471          272 DLLLRFCRLPEKVK---ISSNQLKNLHFNSCENLKAID-TDTPNLLSFTFSYDFN  322 (340)
Q Consensus       272 ~L~l~~c~~i~~~~---~~~~~L~~L~l~~c~~l~~~~-~~~p~L~~L~~~~~~~  322 (340)
                      +|++++|..-+..+   ..+++|++|++++|.-...+. ...++|++|++.++..
T Consensus       227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF  281 (768)
T ss_dssp             EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEE
T ss_pred             EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCcc
Confidence            99999887533332   236899999999986532221 1568999999988654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.11  E-value=1.2e-10  Score=92.26  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=77.8

Q ss_pred             cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhc---CCCCcEEEecccCCCcc
Q 040471          138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNE---CPSLEDFEISACWGLKN  213 (340)
Q Consensus       138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~---~p~L~~L~l~~c~~~~~  213 (340)
                      ...+|......-+|++|++++|.+.+........|++|++|+|++|.. +|.++..+...   |++|++|+|++|..+++
T Consensus        50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            345665444456799999999988775556667899999999999975 99999999873   78999999999999887


Q ss_pred             cc---cccCCCCceEEecccc
Q 040471          214 LC---VSKAHKLKKLAIYTFY  231 (340)
Q Consensus       214 ~~---~~~~~~L~~L~i~~~~  231 (340)
                      .+   +..|++|++|++++|.
T Consensus       130 ~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          130 KGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHHhcCCCCCEEECCCCC
Confidence            53   4568999999999997

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.10  E-value=7.7e-11  Score=101.60  Aligned_cols=195  Identities=18%  Similarity=0.164  Sum_probs=123.5

Q ss_pred             cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      +++++|++..+..      ..++. .+..+++|++|+++++.+..........+++|++|+++++.++.-.. ..+..++
T Consensus        28 ~~l~~L~ls~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLS  100 (276)
T ss_dssp             TTCCEEECTTCCC------CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCT
T ss_pred             CCccEEECCCCcc------cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCc
Confidence            4678888765543      23333 55668889999999887654222345678899999998887632211 2245688


Q ss_pred             CCcEEEecccCC--CcccccccCCCCceEEecccc-cc--cceeeecCcCcceEeccCceeecc---HHHHHHHcCCCcc
Q 040471          199 SLEDFEISACWG--LKNLCVSKAHKLKKLAIYTFY-KD--IGIVEIVVPSLQQQLMLTSVWFMD---EEFDRFISKFPLL  270 (340)
Q Consensus       199 ~L~~L~l~~c~~--~~~~~~~~~~~L~~L~i~~~~-~~--~~~~~~~~p~L~~ll~l~~~~i~~---~~~~~l~~~~~~L  270 (340)
                      +|++|+++++..  +....+..+++|+.|+++++. ..  .......+++|+.+ .+.++.+++   ..+.. +..++.|
T Consensus       101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~~~-l~~L~~l  178 (276)
T 2z62_A          101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-DLSSNKIQSIYCTDLRV-LHQMPLL  178 (276)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE-ECCSSCCCEECGGGGHH-HHTCTTC
T ss_pred             cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE-ECCCCCCCcCCHHHhhh-hhhcccc
Confidence            999999988743  222345677899999998876 12  12222356788887 777766554   23333 3334444


Q ss_pred             c-EEecccCCCCccccc---ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          271 E-DLLLRFCRLPEKVKI---SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       271 ~-~L~l~~c~~i~~~~~---~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      . +|+++++. ++.++.   ...+|++|+++++.--   ..+....++|+.|++.++....
T Consensus       179 ~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          179 NLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             ceeeecCCCc-ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            4 78888765 443332   2357999999887532   2223456889999999876664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.10  E-value=4.5e-10  Score=98.49  Aligned_cols=211  Identities=13%  Similarity=0.059  Sum_probs=138.4

Q ss_pred             cCccEEEEEeecCCCCCccccCCcc--ccCCCCccEEEeeceeCCCCCCccc--ccCcccceEecceEeeChH--HHH-H
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQT--IFSAKSMATLSLFGCRMEQPSDTTT--IRLDSLKKLTLENVYINDQ--MFQ-K  192 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~--~l~-~  192 (340)
                      ..++.+.+.....    ....+...  ....++|++|++++|.+........  ..+++|++|+++++.++..  .+. .
T Consensus        64 ~~l~~l~l~~~~~----~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           64 LRVRRLTVGAAQV----PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             CCCCEEEECSCCC----BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             cceeEEEEeCCcC----CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH
Confidence            3567777754433    22222221  2235779999999998754333343  7799999999999998431  111 1


Q ss_pred             HHhcCCCCcEEEecccCCCcc--cccccCCCCceEEecccc-cccc-----eeeecCcCcceEeccCceeecc--HHHHH
Q 040471          193 LTNECPSLEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY-KDIG-----IVEIVVPSLQQQLMLTSVWFMD--EEFDR  262 (340)
Q Consensus       193 l~~~~p~L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~-~~~~-----~~~~~~p~L~~ll~l~~~~i~~--~~~~~  262 (340)
                      -...+++|++|++++|.-...  -.+..+++|++|+++++. .+..     ......|+|+.| .+.++.++.  .....
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~l~~~~~~  218 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNL-ALRNTGMETPTGVCAA  218 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC-BCCSSCCCCHHHHHHH
T ss_pred             HhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEE-ECCCCCCCchHHHHHH
Confidence            224799999999999865222  245568999999999986 2211     111357888888 888888863  23334


Q ss_pred             HHcCCCcccEEecccCCCCccc-c---ccc---ccccEEEeecCcchhhhccC-CCCeeEEEEeccCCCC-cceeccccc
Q 040471          263 FISKFPLLEDLLLRFCRLPEKV-K---ISS---NQLKNLHFNSCENLKAIDTD-TPNLLSFTFSYDFNPI-PTIAMNALS  333 (340)
Q Consensus       263 l~~~~~~L~~L~l~~c~~i~~~-~---~~~---~~L~~L~l~~c~~l~~~~~~-~p~L~~L~~~~~~~~~-~~~~~~~~~  333 (340)
                      ++.++++|++|++++|.. ++. +   ..+   ++|++|+++++.- ..+... .++|+.|+++++.... |.. ...++
T Consensus       219 l~~~l~~L~~L~Ls~N~l-~~~~p~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~L~~L~Ls~N~l~~~~~~-~~l~~  295 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSL-RATVNPSAPRCMWSSALNSLNLSFAGL-EQVPKGLPAKLRVLDLSSNRLNRAPQP-DELPE  295 (310)
T ss_dssp             HHHHTCCCSSEECTTSCC-CCCCCSCCSSCCCCTTCCCEECCSSCC-CSCCSCCCSCCSCEECCSCCCCSCCCT-TSCCC
T ss_pred             HHhcCCCCCEEECCCCCC-CccchhhHHhccCcCcCCEEECCCCCC-CchhhhhcCCCCEEECCCCcCCCCchh-hhCCC
Confidence            567889999999998764 433 2   123   6999999988754 333322 3799999999987765 432 23345


Q ss_pred             ccccc
Q 040471          334 METLF  338 (340)
Q Consensus       334 ~~~l~  338 (340)
                      ++.|+
T Consensus       296 L~~L~  300 (310)
T 4glp_A          296 VDNLT  300 (310)
T ss_dssp             CSCEE
T ss_pred             ccEEE
Confidence            65554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.10  E-value=4.5e-10  Score=106.30  Aligned_cols=189  Identities=14%  Similarity=0.074  Sum_probs=129.8

Q ss_pred             cCccEEEEEeecCCCCCccccCCcccc-CCCCccEEEeeceeCCCCCC---cccccCcccceEecceEeeCh-HHHHHHH
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIF-SAKSMATLSLFGCRMEQPSD---TTTIRLDSLKKLTLENVYIND-QMFQKLT  194 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~-~~l~~l~  194 (340)
                      .+++.|++..+..      ..+|..++ .+++|+.|++++|.+....+   .....+++|++|+++++.++. ......+
T Consensus       310 ~~L~~L~l~~n~l------~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  383 (549)
T 2z81_A          310 EKVKRITVENSKV------FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL  383 (549)
T ss_dssp             TTCCEEEEESSCC------CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHG
T ss_pred             ccceEEEeccCcc------ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhh
Confidence            5778888766544      46777664 58899999999987654211   124568999999999998843 3234557


Q ss_pred             hcCCCCcEEEecccCCCccc--ccccCCCCceEEecccccccceeeec-CcCcceEeccCceeeccHHHHHHHcCCCccc
Q 040471          195 NECPSLEDFEISACWGLKNL--CVSKAHKLKKLAIYTFYKDIGIVEIV-VPSLQQQLMLTSVWFMDEEFDRFISKFPLLE  271 (340)
Q Consensus       195 ~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~~~~~~~~~~-~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~  271 (340)
                      ..+++|++|++++|. +..+  .+..+++|++|+++++.  +..+... .++|+.+ +++++.+++.     +.++++|+
T Consensus       384 ~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~--l~~l~~~~~~~L~~L-~Ls~N~l~~~-----~~~l~~L~  454 (549)
T 2z81_A          384 LTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG--IRVVKTCIPQTLEVL-DVSNNNLDSF-----SLFLPRLQ  454 (549)
T ss_dssp             GGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC--CSCCCTTSCTTCSEE-ECCSSCCSCC-----CCCCTTCC
T ss_pred             hcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC--cccccchhcCCceEE-ECCCCChhhh-----cccCChhc
Confidence            789999999999883 3322  23456889999999886  2222211 2577777 7777776552     36789999


Q ss_pred             EEecccCCCCccccc--ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          272 DLLLRFCRLPEKVKI--SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       272 ~L~l~~c~~i~~~~~--~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      +|++++|. ++.++.  .+++|+.|+++++.--   .......++|+.|++.++....
T Consensus       455 ~L~Ls~N~-l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          455 ELYISRNK-LKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  511 (549)
T ss_dssp             EEECCSSC-CSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred             EEECCCCc-cCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence            99999875 444432  3689999999987432   1223456899999999977654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.10  E-value=3.6e-10  Score=108.22  Aligned_cols=195  Identities=13%  Similarity=0.039  Sum_probs=119.6

Q ss_pred             cCccEEEEEeecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ++++.|++..+..      ..++ ..+..+++|++|+|++|.+..........+++|++|+|+++.++. ....++..++
T Consensus        75 ~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~  147 (597)
T 3oja_B           75 RQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTP  147 (597)
T ss_dssp             CCCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT
T ss_pred             CCCcEEECCCCCC------CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCC
Confidence            6899999866544      2333 366778999999999998765333345789999999999998741 1123356789


Q ss_pred             CCcEEEecccCCCc--ccccccCCCCceEEecccccccceee-ecCcCcceEeccCceeecc--------------HHHH
Q 040471          199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFYKDIGIVE-IVVPSLQQQLMLTSVWFMD--------------EEFD  261 (340)
Q Consensus       199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~~~~~~~~-~~~p~L~~ll~l~~~~i~~--------------~~~~  261 (340)
                      +|++|++++|.-..  .-.+..+++|+.|+++++.  +..+. ...|+|+.+ .+.++.++.              ..+.
T Consensus       148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~L-~l~~n~l~~l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHA-NVSYNLLSTLAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCCGGGCTTCSEE-ECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred             CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcChhhhhhhhhh-hcccCccccccCCchhheeeccCCccc
Confidence            99999999985322  2235678999999999876  11111 134555554 232222211              0000


Q ss_pred             HH-HcCCCcccEEecccCCCCccc-ccccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          262 RF-ISKFPLLEDLLLRFCRLPEKV-KISSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       262 ~l-~~~~~~L~~L~l~~c~~i~~~-~~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      .+ ....++|+.|++++|..-+.. ...+++|+.|+++++.--   .......++|+.|++.++....
T Consensus       225 ~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  292 (597)
T 3oja_B          225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA  292 (597)
T ss_dssp             EEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE
T ss_pred             ccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC
Confidence            00 012356777777765432211 112578888888877532   1222356888888888866553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.10  E-value=4.4e-10  Score=97.66  Aligned_cols=163  Identities=17%  Similarity=0.130  Sum_probs=106.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..      ..++ .+..+++|+.|++++|.+...  +....+++|+.|+++++.++.  +.. +..+++
T Consensus        46 ~~L~~L~l~~~~i------~~~~-~~~~l~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~  113 (291)
T 1h6t_A           46 NSIDQIIANNSDI------KSVQ-GIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKD--LSS-LKDLKK  113 (291)
T ss_dssp             HTCCEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC--GGG-GTTCTT
T ss_pred             CcccEEEccCCCc------ccCh-hHhcCCCCCEEEccCCccCCC--cccccCCCCCEEECCCCcCCC--Chh-hccCCC
Confidence            5778887765543      2333 356678888888888877652  226678888888888887732  112 567888


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c  278 (340)
                      |++|++++|.--..-.+..+++|+.|+++++. ... .....+++|+.| .+.++.+++...   +..+++|++|++++|
T Consensus       114 L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L-~L~~N~l~~~~~---l~~l~~L~~L~L~~N  188 (291)
T 1h6t_A          114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL-SLEDNQISDIVP---LAGLTKLQNLYLSKN  188 (291)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE-ECCSSCCCCCGG---GTTCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE-EccCCccccchh---hcCCCccCEEECCCC
Confidence            88888888743222245567888888888876 222 112246677776 666666655322   667788888888876


Q ss_pred             CCCccccc--ccccccEEEeecCc
Q 040471          279 RLPEKVKI--SSNQLKNLHFNSCE  300 (340)
Q Consensus       279 ~~i~~~~~--~~~~L~~L~l~~c~  300 (340)
                      . +++++.  .+++|+.|+++++.
T Consensus       189 ~-i~~l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          189 H-ISDLRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             C-CCBCGGGTTCTTCSEEEEEEEE
T ss_pred             c-CCCChhhccCCCCCEEECcCCc
Confidence            4 444322  25778888887654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.10  E-value=5.9e-10  Score=103.14  Aligned_cols=157  Identities=10%  Similarity=0.023  Sum_probs=90.8

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|++..+..      ..++  +..+++|++|+++++.+...   ....+++|++|+++++.++.-.    +..+++
T Consensus        85 ~~L~~L~Ls~N~l------~~~~--~~~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l~----l~~l~~  149 (457)
T 3bz5_A           85 TNLTYLACDSNKL------TNLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEID----VSHNTQ  149 (457)
T ss_dssp             TTCSEEECCSSCC------SCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCCC----CTTCTT
T ss_pred             CCCCEEECcCCCC------ceee--cCCCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCccceec----cccCCc
Confidence            4667777655543      1222  45567777777777766541   2456677777777777663211    456777


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c  278 (340)
                      |++|++++|..+..+.+..+++|+.|+++++. ....  ...+++|+.+ .+.++.+++..    +..+++|++|++++|
T Consensus       150 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L-~l~~N~l~~~~----l~~l~~L~~L~Ls~N  222 (457)
T 3bz5_A          150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRL-NCDTNNITKLD----LNQNIQLTFLDCSSN  222 (457)
T ss_dssp             CCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEE-ECCSSCCSCCC----CTTCTTCSEEECCSS
T ss_pred             CCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEE-ECcCCcCCeec----cccCCCCCEEECcCC
Confidence            77777777766655556666777777777665 1211  1235556665 55555444431    445666666666655


Q ss_pred             CCCcccccc-cccccEEEeecC
Q 040471          279 RLPEKVKIS-SNQLKNLHFNSC  299 (340)
Q Consensus       279 ~~i~~~~~~-~~~L~~L~l~~c  299 (340)
                      . ++.++.. +++|+.|+++++
T Consensus       223 ~-l~~ip~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          223 K-LTEIDVTPLTQLTYFDCSVN  243 (457)
T ss_dssp             C-CSCCCCTTCTTCSEEECCSS
T ss_pred             c-ccccCccccCCCCEEEeeCC
Confidence            4 3333322 456666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.09  E-value=2.7e-10  Score=98.67  Aligned_cols=181  Identities=15%  Similarity=0.083  Sum_probs=125.5

Q ss_pred             cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---
Q 040471          138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL---  214 (340)
Q Consensus       138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~---  214 (340)
                      ...+|..+  .++|++|+++++.+..........+++|++|++.++.++.-. ...+..+++|++|+++++..+..+   
T Consensus        23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence            34555433  468999999998875533334568999999999998773211 122467899999999998755443   


Q ss_pred             ccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----cc
Q 040471          215 CVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SS  288 (340)
Q Consensus       215 ~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~  288 (340)
                      .+..+++|++|+++++. .... .....+++|+.+ .+.++.++.... ..+.++++|++|++++|. ++.++.    .+
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  176 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQALPD-DTFRDLGNLTHLFLHGNR-ISSVPERAFRGL  176 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE-ECCCCcccccCH-hHhccCCCccEEECCCCc-ccccCHHHhcCc
Confidence            45568999999999887 2221 112357888888 777666553221 235678999999999875 544443    26


Q ss_pred             ccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          289 NQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       289 ~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      ++|++|+++++.--   .......++|+.|++.++....
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence            89999999988642   1222356899999999976654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.09  E-value=2.5e-10  Score=98.06  Aligned_cols=59  Identities=15%  Similarity=0.111  Sum_probs=29.7

Q ss_pred             HcCCCcccEEecccCCCCccccc----ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471          264 ISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       264 ~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      +..+++|++|++++|. ++.++.    .+++|++|+++++.--   .......++|+.|++.++...
T Consensus       153 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            3455666666666553 332222    2456666666665321   111223466666666665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.09  E-value=1.5e-10  Score=111.02  Aligned_cols=196  Identities=16%  Similarity=0.097  Sum_probs=94.3

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc-ccccCcccceEecceEeeChHH-HHHHHhcC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT-TTIRLDSLKKLTLENVYINDQM-FQKLTNEC  197 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~~  197 (340)
                      +++++|++..+..     ....|..+..+++|+.|++++|.+...... ....+++|++|+++++.++... ....+..+
T Consensus       301 ~~L~~L~l~~n~l-----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l  375 (606)
T 3t6q_A          301 STLKKLVLSANKF-----ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL  375 (606)
T ss_dssp             TTCCEEECTTCCC-----SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred             ccCCEEECccCCc-----CcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence            5677777765543     122234555677777777777755422212 2456677777777776652211 11224556


Q ss_pred             CCCcEEEecccCCCc--ccccccCCCCceEEecccc-cccc--eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccE
Q 040471          198 PSLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY-KDIG--IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLED  272 (340)
Q Consensus       198 p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~-~~~~--~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~  272 (340)
                      ++|++|++++|....  ...+..+++|+.|+++++. ....  .....+++|+.+ .+.++.++.... ..+.++++|++
T Consensus       376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~-~~~~~l~~L~~  453 (606)
T 3t6q_A          376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL-NLSHSLLDISSE-QLFDGLPALQH  453 (606)
T ss_dssp             TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE-ECTTCCCBTTCT-TTTTTCTTCCE
T ss_pred             CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE-ECCCCccCCcCH-HHHhCCCCCCE
Confidence            777777777664211  1133445666666666654 1111  111234555555 444444332211 12344555555


Q ss_pred             EecccCCCCcc------cccccccccEEEeecCcchh---hhccCCCCeeEEEEeccCC
Q 040471          273 LLLRFCRLPEK------VKISSNQLKNLHFNSCENLK---AIDTDTPNLLSFTFSYDFN  322 (340)
Q Consensus       273 L~l~~c~~i~~------~~~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~  322 (340)
                      |++++|..-+.      ....+++|++|++++|.-..   ......++|+.|+++++..
T Consensus       454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  512 (606)
T 3t6q_A          454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL  512 (606)
T ss_dssp             EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence            55555442110      01113555555555553211   1112335555555555433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.09  E-value=2.5e-10  Score=109.51  Aligned_cols=174  Identities=16%  Similarity=0.089  Sum_probs=82.3

Q ss_pred             CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeC-hHHHHHHHhcCCCCcEEEecccCCCcc-cccccCCCCce
Q 040471          147 SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIN-DQMFQKLTNECPSLEDFEISACWGLKN-LCVSKAHKLKK  224 (340)
Q Consensus       147 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~L~~L~l~~c~~~~~-~~~~~~~~L~~  224 (340)
                      .+++|+.|+++++.....  .....+++|++|+++++.++ ...+......+++|++|++++|..... -.+..+++|+.
T Consensus       326 ~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~  403 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH  403 (606)
T ss_dssp             CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE
T ss_pred             CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe
Confidence            444455555554421110  12235666777777666552 111122345567777777766532100 11223344444


Q ss_pred             EEecccc-ccc--------------------------ceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEeccc
Q 040471          225 LAIYTFY-KDI--------------------------GIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRF  277 (340)
Q Consensus       225 L~i~~~~-~~~--------------------------~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~  277 (340)
                      |+++++. ...                          ......+++|+.+ .+.++.+++......+.++++|++|++++
T Consensus       404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~  482 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL-KMAGNSFKDNTLSNVFANTTNLTFLDLSK  482 (606)
T ss_dssp             EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE-ECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence            4444433 000                          0001133445554 55555555433333455667777777776


Q ss_pred             CCCCcccc---cccccccEEEeecCcchh---hhccCCCCeeEEEEeccCCC
Q 040471          278 CRLPEKVK---ISSNQLKNLHFNSCENLK---AIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       278 c~~i~~~~---~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~~  323 (340)
                      |...+..+   ..+++|++|++++|.-..   ......++|+.|++.++...
T Consensus       483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            64322111   124677777777664321   11233466777777665554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.09  E-value=5.2e-10  Score=103.37  Aligned_cols=105  Identities=15%  Similarity=0.119  Sum_probs=55.4

Q ss_pred             ccCCCCceEEecccc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc----ccccc
Q 040471          217 SKAHKLKKLAIYTFY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK----ISSNQ  290 (340)
Q Consensus       217 ~~~~~L~~L~i~~~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~----~~~~~  290 (340)
                      ..+++|+.|+++++. ..... ....+++|+.| .+.++.+++.. ...+.++++|++|++++|.. +.+.    ..+++
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~  372 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL-NLSQNFLGSID-SRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPN  372 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-ECCSSCCCEEC-GGGGTTCTTCCEEECCSSCC-CEECTTTTTTCTT
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEE-ECCCCccCCcC-hhHhcCcccCCEEECCCCcc-cccChhhcccccc
Confidence            345666666666654 11111 11135566666 55555543321 12245677777777776643 3331    12567


Q ss_pred             ccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          291 LKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       291 L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      |++|+++++.--   .......++|+.|++.++....
T Consensus       373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            777777765421   1122345777777777765544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.08  E-value=4.9e-10  Score=110.96  Aligned_cols=175  Identities=13%  Similarity=0.081  Sum_probs=113.9

Q ss_pred             cCccEEEEEeecCCCC-----Ccc-------ccCCcccc--CCCCccEEEeeceeCCCCCCcccccCcccceEecceEe-
Q 040471          120 NGIKDLVLMVHNMTQE-----DTV-------CILPQTIF--SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVY-  184 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~-----~~~-------~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-  184 (340)
                      .+++.|++..+.....     ...       ..+|..+.  .+++|+.|+|++|.+....+.....+++|+.|+++++. 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            6899999987765100     000       02888877  89999999999998765555667889999999999997 


Q ss_pred             eCh----HHHHHHH---hcCCCCcEEEecccCCCccc----ccccCCCCceEEecccc-cccceeeecCcCcceEeccCc
Q 040471          185 IND----QMFQKLT---NECPSLEDFEISACWGLKNL----CVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTS  252 (340)
Q Consensus       185 ~~~----~~l~~l~---~~~p~L~~L~l~~c~~~~~~----~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~  252 (340)
                      ++.    ..+..+.   ..+|+|+.|++++|.-- .+    .+..+++|+.|+++++. ..+. ....+++|+.| .+.+
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L-~Ls~  604 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDL-KLDY  604 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEE-ECCS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEE-ECcC
Confidence            554    2233322   45679999999988543 32    35567899999999886 2122 11245666666 6666


Q ss_pred             eeeccHHHHHHHcCCCc-ccEEecccCCCCcccccc-----cccccEEEeecCc
Q 040471          253 VWFMDEEFDRFISKFPL-LEDLLLRFCRLPEKVKIS-----SNQLKNLHFNSCE  300 (340)
Q Consensus       253 ~~i~~~~~~~l~~~~~~-L~~L~l~~c~~i~~~~~~-----~~~L~~L~l~~c~  300 (340)
                      +.++  .+...+..+++ |++|++++|. ++.++..     .++|+.|++++|.
T Consensus       605 N~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          605 NQIE--EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             SCCS--CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             Cccc--cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence            6655  22222455677 8888887765 3333322     1236666666553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.07  E-value=6.8e-11  Score=112.43  Aligned_cols=175  Identities=16%  Similarity=0.051  Sum_probs=121.3

Q ss_pred             cCCCCccEEEeeceeCCCCC--CcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcc---cccccCC
Q 040471          146 FSAKSMATLSLFGCRMEQPS--DTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKN---LCVSKAH  220 (340)
Q Consensus       146 ~~~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~---~~~~~~~  220 (340)
                      ..+++|+.|+++++.+....  ......+++|++|++.++.+..-...  +..+++|++|++++|.....   ..+..++
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  421 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  421 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCC
Confidence            45678888888887654311  12345789999999999876221111  56799999999999853221   2355789


Q ss_pred             CCceEEecccc-cc-cceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccc-cc---ccccccEE
Q 040471          221 KLKKLAIYTFY-KD-IGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKV-KI---SSNQLKNL  294 (340)
Q Consensus       221 ~L~~L~i~~~~-~~-~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~-~~---~~~~L~~L  294 (340)
                      +|+.|+++++. .. .......+++|+.+ .+.++.+++..+...+..+++|++|++++|.. +.. +.   .+++|++|
T Consensus       422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          422 NLIYLDISHTHTRVAFNGIFNGLSSLEVL-KMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEE-ECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEE
T ss_pred             CCCEEeCcCCcccccchhhhhcCCcCcEE-ECcCCcCccccchhhhhcccCCCEEECCCCcc-ccCChhhhhcccCCCEE
Confidence            99999999886 11 11222357888888 88888876544445577899999999998864 333 22   36899999


Q ss_pred             EeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          295 HFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       295 ~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      ++++|.--   .......++|+.|++.++....
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            99988532   1223456999999999977654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.07  E-value=8.4e-10  Score=95.88  Aligned_cols=166  Identities=17%  Similarity=0.093  Sum_probs=122.2

Q ss_pred             cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceE
Q 040471          146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKL  225 (340)
Q Consensus       146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L  225 (340)
                      ..+++|+.|++++|.+...  +....+++|++|+++++.++.-.  . +..+++|+.|+++++.--..-.+..+++|+.|
T Consensus        43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L  117 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL  117 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred             hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence            3478899999999987652  34677999999999999883221  1 67899999999999854332246678999999


Q ss_pred             Eecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCcc-
Q 040471          226 AIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCEN-  301 (340)
Q Consensus       226 ~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~~-  301 (340)
                      +++++. .... ....+++|+.| .+.++.+++-   ..+..+++|++|++++|. ++++.  ..+++|+.|+++++.- 
T Consensus       118 ~L~~n~i~~~~-~l~~l~~L~~L-~l~~n~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          118 SLEHNGISDIN-GLVHLPQLESL-YLGNNKITDI---TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEE-ECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCCCh-hhcCCCCCCEE-EccCCcCCcc---hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCcCC
Confidence            999987 2221 12357888888 7777777654   346789999999999875 44332  2368999999998743 


Q ss_pred             -hhhhccCCCCeeEEEEeccCCC
Q 040471          302 -LKAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       302 -l~~~~~~~p~L~~L~~~~~~~~  323 (340)
                       +.. ....++|+.|++.++...
T Consensus       192 ~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          192 DLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             BCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             CChh-hccCCCCCEEECcCCccc
Confidence             122 345699999999986543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.06  E-value=1.5e-10  Score=104.77  Aligned_cols=212  Identities=12%  Similarity=0.065  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHH-cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCC---CCccc-------ccCcccce
Q 040471          109 LLDKWIGLAVD-NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQP---SDTTT-------IRLDSLKK  177 (340)
Q Consensus       109 ~l~~~l~~~~~-~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~---~~~~~-------~~~~~L~~  177 (340)
                      .+..+...... +++++|++..+... ......++..+..+++|++|+|++|.+..-   .+...       ..+++|++
T Consensus        20 ~~~~l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~   98 (386)
T 2ca6_A           20 DEKSVFAVLLEDDSVKEIVLSGNTIG-TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   98 (386)
T ss_dssp             HHHTTSHHHHHCSCCCEEECTTSEEC-HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCC-HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence            44444444333 78999999665431 002233455566799999999999865421   11111       47899999


Q ss_pred             EecceEeeChH---HHHHHHhcCCCCcEEEecccCCCccc---c----cccC---------CCCceEEecccccc---cc
Q 040471          178 LTLENVYINDQ---MFQKLTNECPSLEDFEISACWGLKNL---C----VSKA---------HKLKKLAIYTFYKD---IG  235 (340)
Q Consensus       178 L~L~~~~~~~~---~l~~l~~~~p~L~~L~l~~c~~~~~~---~----~~~~---------~~L~~L~i~~~~~~---~~  235 (340)
                      |+|+++.+++.   .+...+..+++|++|++++|.- ...   .    +..+         ++|++|+++++.-.   ..
T Consensus        99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A           99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            99999998554   3444567899999999999854 211   1    2223         89999999988722   22


Q ss_pred             ee---eecCcCcceEeccCceeeccHHHHH----HHcCCCcccEEecccCCCCc-----ccc---cccccccEEEeecCc
Q 040471          236 IV---EIVVPSLQQQLMLTSVWFMDEEFDR----FISKFPLLEDLLLRFCRLPE-----KVK---ISSNQLKNLHFNSCE  300 (340)
Q Consensus       236 ~~---~~~~p~L~~ll~l~~~~i~~~~~~~----l~~~~~~L~~L~l~~c~~i~-----~~~---~~~~~L~~L~l~~c~  300 (340)
                      .+   ...+++|+.| .+.++.+++.++..    .+.++++|++|++++|. ++     .++   ..+++|++|++++|.
T Consensus       178 ~l~~~l~~~~~L~~L-~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~  255 (386)
T 2ca6_A          178 EWAKTFQSHRLLHTV-KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL  255 (386)
T ss_dssp             HHHHHHHHCTTCCEE-ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             HHHHHHHhCCCcCEE-ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence            11   1257889998 88888998776444    45689999999999887 42     222   236899999999986


Q ss_pred             chh----hhc-----cCCCCeeEEEEeccCCCC
Q 040471          301 NLK----AID-----TDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       301 ~l~----~~~-----~~~p~L~~L~~~~~~~~~  324 (340)
                      --.    .+.     ...++|+.|++.++....
T Consensus       256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            421    111     127999999999976653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.06  E-value=8.8e-10  Score=101.96  Aligned_cols=181  Identities=18%  Similarity=0.145  Sum_probs=119.4

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +++++|++..+..      ..+|  +..+++|++|++++|.+...   ....+++|++|+++++.++.-.    +..+++
T Consensus        64 ~~L~~L~Ls~n~l------~~~~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l~----~~~l~~  128 (457)
T 3bz5_A           64 TGLTKLICTSNNI------TTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD----VSQNPL  128 (457)
T ss_dssp             TTCSEEECCSSCC------SCCC--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCCC----CTTCTT
T ss_pred             CCCCEEEccCCcC------CeEc--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCeec----CCCCCc
Confidence            5777777765544      2233  55677788888887776542   2456788888888877763311    566788


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccccccceeee-cCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccC
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEI-VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFC  278 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c  278 (340)
                      |++|+++++. +..+.+..+++|+.|+++++. ....+.+ .+++|+.+ .+.++.+++-.    +..+++|++|++++|
T Consensus       129 L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L-~ls~n~l~~l~----l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          129 LTYLNCARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTL-DCSFNKITELD----VSQNKLLNRLNCDTN  201 (457)
T ss_dssp             CCEEECTTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEE-ECCSSCCCCCC----CTTCTTCCEEECCSS
T ss_pred             CCEEECCCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEE-ECCCCccceec----cccCCCCCEEECcCC
Confidence            8888888763 333456667888888888774 1222222 46777777 77777666532    567899999999976


Q ss_pred             CCCccccc-ccccccEEEeecCcchhhhc-cCCCCeeEEEEeccCCCC
Q 040471          279 RLPEKVKI-SSNQLKNLHFNSCENLKAID-TDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       279 ~~i~~~~~-~~~~L~~L~l~~c~~l~~~~-~~~p~L~~L~~~~~~~~~  324 (340)
                      . ++.+.. .+++|+.|+++++.- ..+. ...++|+.|++.++....
T Consensus       202 ~-l~~~~l~~l~~L~~L~Ls~N~l-~~ip~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          202 N-ITKLDLNQNIQLTFLDCSSNKL-TEIDVTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             C-CSCCCCTTCTTCSEEECCSSCC-SCCCCTTCTTCSEEECCSSCCSC
T ss_pred             c-CCeeccccCCCCCEEECcCCcc-cccCccccCCCCEEEeeCCcCCC
Confidence            5 444433 368999999988753 2232 345888889888866543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.06  E-value=3.1e-10  Score=108.83  Aligned_cols=147  Identities=16%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..      ..+| .+..+++|+.|++++|.+.. . +.. .+++|++|++.++......   -...+|+
T Consensus       285 ~~L~~L~l~~~~~------~~l~-~l~~~~~L~~L~l~~n~l~~-l-p~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~  351 (606)
T 3vq2_A          285 ANVSAMSLAGVSI------KYLE-DVPKHFKWQSLSIIRCQLKQ-F-PTL-DLPFLKSLTLTMNKGSISF---KKVALPS  351 (606)
T ss_dssp             TTCSEEEEESCCC------CCCC-CCCTTCCCSEEEEESCCCSS-C-CCC-CCSSCCEEEEESCSSCEEC---CCCCCTT
T ss_pred             CCCCEEEecCccc------hhhh-hccccccCCEEEcccccCcc-c-ccC-CCCccceeeccCCcCccch---hhccCCC
Confidence            5667777655543      3344 55567778888888877632 2 233 7788888888777431111   2346788


Q ss_pred             CcEEEecccCCCc----ccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          200 LEDFEISACWGLK----NLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       200 L~~L~l~~c~~~~----~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      |++|++++|.--.    ...+..+++|+.|+++++. .........+++|+.+ .+.++.+.+......+.++++|++|+
T Consensus       352 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~l~~L~~L~  430 (606)
T 3vq2_A          352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL-DFQHSTLKRVTEFSAFLSLEKLLYLD  430 (606)
T ss_dssp             CCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEE-ECTTSEEESTTTTTTTTTCTTCCEEE
T ss_pred             CCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCee-ECCCCccCCccChhhhhccccCCEEE
Confidence            8888888774321    1233457888888888776 2222122246677776 66665554433222345566666666


Q ss_pred             cccCCC
Q 040471          275 LRFCRL  280 (340)
Q Consensus       275 l~~c~~  280 (340)
                      +++|..
T Consensus       431 l~~n~l  436 (606)
T 3vq2_A          431 ISYTNT  436 (606)
T ss_dssp             CTTSCC
T ss_pred             CcCCCC
Confidence            665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.05  E-value=3.1e-09  Score=99.87  Aligned_cols=218  Identities=14%  Similarity=0.083  Sum_probs=132.9

Q ss_pred             cccceEEEEEeccCcCCChhhHHHHHHHHHHcCccEEEEEeecCCCCCccccCCccc-----cCCCC-------------
Q 040471           89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVDNGIKDLVLMVHNMTQEDTVCILPQTI-----FSAKS-------------  150 (340)
Q Consensus        89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~-----~~~~~-------------  150 (340)
                      ..++.+.+....    .....+..+.......++++|++..+..     ...+|..+     ..+++             
T Consensus       220 ~~L~~L~l~~~~----l~~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~  290 (520)
T 2z7x_B          220 PKLSNLTLNNIE----TTWNSFIRILQLVWHTTVWYFSISNVKL-----QGQLDFRDFDYSGTSLKALSIHQVVSDVFGF  290 (520)
T ss_dssp             TTCCEEEEEEEE----EEHHHHHHHHHHHHTSSCSEEEEEEEEE-----ESCCCCCCCCCCSCCCCEEEEEEEEECCCCS
T ss_pred             cchhhccccccc----cCHHHHHHHHHHhhhCcccEEEeecccc-----cCccccchhhcccccCceeEeccccccceec
Confidence            567777776432    1222344444444456899999977653     11344444     33344             


Q ss_pred             -------------ccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--cc-
Q 040471          151 -------------MATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NL-  214 (340)
Q Consensus       151 -------------L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~-  214 (340)
                                   |+.|+++++.+....  ....+++|++|+++++.+++.... .+..+++|++|++++|.--.  .+ 
T Consensus       291 p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~  367 (520)
T 2z7x_B          291 PQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIA  367 (520)
T ss_dssp             CTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred             chhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccch
Confidence                         444444444432211  115778899999988887542222 23678899999998875432  21 


Q ss_pred             -ccccCCCCceEEecccc-cc-cce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc---c
Q 040471          215 -CVSKAHKLKKLAIYTFY-KD-IGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI---S  287 (340)
Q Consensus       215 -~~~~~~~L~~L~i~~~~-~~-~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~---~  287 (340)
                       .+..+++|+.|+++++. .. ... .....++|+.+ .+.++.+++.....+   .++|++|++++|. ++.++.   .
T Consensus       368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L-~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~-l~~ip~~~~~  442 (520)
T 2z7x_B          368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSSNILTDTIFRCL---PPRIKVLDLHSNK-IKSIPKQVVK  442 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEE-ECCSSCCCGGGGGSC---CTTCCEEECCSSC-CCCCCGGGGG
T ss_pred             HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEE-ECcCCCCCcchhhhh---cccCCEEECCCCc-ccccchhhhc
Confidence             24567889999998876 21 221 22346778887 777777765433221   1789999999875 444433   4


Q ss_pred             cccccEEEeecCcchhhhc----cCCCCeeEEEEeccCCCC
Q 040471          288 SNQLKNLHFNSCENLKAID----TDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       288 ~~~L~~L~l~~c~~l~~~~----~~~p~L~~L~~~~~~~~~  324 (340)
                      +++|++|++++|.- ..+.    ...++|+.|++.++...+
T Consensus       443 l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          443 LEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCEEECCCCcC-CccCHHHhccCCcccEEECcCCCCcc
Confidence            68899999988743 2332    345889999999877654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.04  E-value=5.5e-10  Score=95.93  Aligned_cols=171  Identities=15%  Similarity=0.081  Sum_probs=109.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .++++|++..+..      ..++. .+..+++|++|+++++.+..........+++|++|++.++.++.-. ...+..++
T Consensus        37 ~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~  109 (270)
T 2o6q_A           37 ADTKKLDLQSNKL------SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLV  109 (270)
T ss_dssp             TTCSEEECCSSCC------SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCS
T ss_pred             CCCCEEECcCCCC------CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHccccc
Confidence            3678888765544      34443 4566888999999888765422223456888999999888763211 12346688


Q ss_pred             CCcEEEecccCCC--cccccccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          199 SLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       199 ~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      +|++|+++++.--  ..-.+..+++|+.|+++++. .....- ...+++|+.| .+.++.++.-.. ..+.++++|++|+
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~-~~~~~l~~L~~L~  187 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL-RLYNNQLKRVPE-GAFDKLTELKTLK  187 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCT-TTTTTCTTCCEEE
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee-EecCCcCcEeCh-hHhccCCCcCEEE
Confidence            8999999887432  12234567889999998876 211111 1246778877 666665543221 2246789999999


Q ss_pred             cccCCCCccccc----ccccccEEEeecCc
Q 040471          275 LRFCRLPEKVKI----SSNQLKNLHFNSCE  300 (340)
Q Consensus       275 l~~c~~i~~~~~----~~~~L~~L~l~~c~  300 (340)
                      +++|. ++.++.    .+++|+.|++.+++
T Consensus       188 L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          188 LDNNQ-LKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence            99875 444443    26899999998754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.03  E-value=5.4e-10  Score=91.24  Aligned_cols=145  Identities=16%  Similarity=0.118  Sum_probs=90.1

Q ss_pred             HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ..++++|++..+..      ..+| .+..+++|++|++++|.+..  .+....+++|++|+++++.++...... +..++
T Consensus        43 l~~L~~L~l~~n~i------~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~  112 (197)
T 4ezg_A           43 MNSLTYITLANINV------TDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPN-LSGLT  112 (197)
T ss_dssp             HHTCCEEEEESSCC------SCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCT
T ss_pred             cCCccEEeccCCCc------cChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChh-hcCCC
Confidence            35788888876554      3455 46677888888888885543  234566888888888887775433333 45688


Q ss_pred             CCcEEEecccCCCc--ccccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecc
Q 040471          199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLR  276 (340)
Q Consensus       199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~  276 (340)
                      +|+.|++++|.--.  .-.+..+++|+.|++++|.                 .+...        ..+.++++|++|+++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-----------------~i~~~--------~~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG-----------------AITDI--------MPLKTLPELKSLNIQ  167 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT-----------------BCCCC--------GGGGGCSSCCEEECT
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC-----------------Ccccc--------HhhcCCCCCCEEECC
Confidence            88888888875432  1234567888888888764                 01110        013456667777776


Q ss_pred             cCCCCcccc--cccccccEEEeecC
Q 040471          277 FCRLPEKVK--ISSNQLKNLHFNSC  299 (340)
Q Consensus       277 ~c~~i~~~~--~~~~~L~~L~l~~c  299 (340)
                      +|. ++++.  ..+++|++|++.++
T Consensus       168 ~n~-i~~~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          168 FDG-VHDYRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             TBC-CCCCTTGGGCSSCCEEEECBC
T ss_pred             CCC-CcChHHhccCCCCCEEEeeCc
Confidence            654 33332  12466777766654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.02  E-value=7.2e-10  Score=106.92  Aligned_cols=147  Identities=14%  Similarity=0.073  Sum_probs=77.7

Q ss_pred             cCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccccc---c-------cCCCCceEEecccc-cccceeee
Q 040471          171 RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCV---S-------KAHKLKKLAIYTFY-KDIGIVEI  239 (340)
Q Consensus       171 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~---~-------~~~~L~~L~i~~~~-~~~~~~~~  239 (340)
                      .+++|++|+++++.++. -...+...+++|++|++++|.-. .+..   .       .+++|+.|+++++. ..+.....
T Consensus       431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  508 (636)
T 4eco_A          431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR  508 (636)
T ss_dssp             CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred             cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence            34466666666665531 11233445677777777765332 2211   1       11267777777665 21111112


Q ss_pred             --cCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCC------CCccccc---ccccccEEEeecCcchhhhcc-
Q 040471          240 --VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCR------LPEKVKI---SSNQLKNLHFNSCENLKAIDT-  307 (340)
Q Consensus       240 --~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~------~i~~~~~---~~~~L~~L~l~~c~~l~~~~~-  307 (340)
                        ..++|+.| .+.++.+++  +..-+.++++|++|++++|.      ..+.++.   .+++|++|++++|.- ..+.. 
T Consensus       509 ~~~l~~L~~L-~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          509 ATTLPYLVGI-DLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             TTTCTTCCEE-ECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             hccCCCcCEE-ECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence              55666666 666666554  22234457777777775432      2222222   256777777777654 33332 


Q ss_pred             CCCCeeEEEEeccCCC
Q 040471          308 DTPNLLSFTFSYDFNP  323 (340)
Q Consensus       308 ~~p~L~~L~~~~~~~~  323 (340)
                      ..++|+.|+++++...
T Consensus       585 ~~~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          585 ITPNISVLDIKDNPNI  600 (636)
T ss_dssp             CCTTCCEEECCSCTTC
T ss_pred             HhCcCCEEECcCCCCc
Confidence            2277888888776554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.02  E-value=8.4e-10  Score=105.38  Aligned_cols=165  Identities=17%  Similarity=0.107  Sum_probs=117.6

Q ss_pred             HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ..+|+.|++..+..      ..++ .+..+++|+.|+|++|.+...  +....+++|+.|+|+++.+..-  . .+..++
T Consensus        42 L~~L~~L~l~~n~i------~~l~-~l~~l~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~  109 (605)
T 1m9s_A           42 LNSIDQIIANNSDI------KSVQ-GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDL--S-SLKDLK  109 (605)
T ss_dssp             HTTCCCCBCTTCCC------CCCT-TGGGCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--T-TSTTCT
T ss_pred             CCCCCEEECcCCCC------CCCh-HHccCCCCCEEEeeCCCCCCC--hhhccCCCCCEEECcCCCCCCC--h-hhccCC
Confidence            36788888865544      3344 467789999999999987652  2367899999999999988321  1 256789


Q ss_pred             CCcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEeccc
Q 040471          199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRF  277 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~  277 (340)
                      +|+.|++++|..-..-.+..+++|+.|+++++. ... .....+++|+.| .+.++.+++...   +..+++|++|++++
T Consensus       110 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L-~Ls~N~l~~~~~---l~~l~~L~~L~Ls~  184 (605)
T 1m9s_A          110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL-SLEDNQISDIVP---LAGLTKLQNLYLSK  184 (605)
T ss_dssp             TCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE-ECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEE-ECcCCcCCCchh---hccCCCCCEEECcC
Confidence            999999999854332346678999999999887 222 222256778887 777777665432   67889999999987


Q ss_pred             CCCCccccc--ccccccEEEeecCcc
Q 040471          278 CRLPEKVKI--SSNQLKNLHFNSCEN  301 (340)
Q Consensus       278 c~~i~~~~~--~~~~L~~L~l~~c~~  301 (340)
                      |. +++++.  .+++|+.|++++|.-
T Consensus       185 N~-i~~l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          185 NH-ISDLRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             SC-CCBCGGGTTCTTCSEEECCSEEE
T ss_pred             CC-CCCChHHccCCCCCEEEccCCcC
Confidence            75 444322  267888888887654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.02  E-value=7.1e-10  Score=98.10  Aligned_cols=192  Identities=11%  Similarity=0.049  Sum_probs=130.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeCh-HHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIND-QMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p  198 (340)
                      +++++|++..+..      ..+|..++  ++|++|+++++.+..........+++|+.|++.++.+.. ......+..++
T Consensus       100 ~~L~~L~Ls~n~l------~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  171 (330)
T 1xku_A          100 VKLERLYLSKNQL------KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK  171 (330)
T ss_dssp             TTCCEEECCSSCC------SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred             CCCCEEECCCCcC------CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence            6899999976654      35665554  789999999988765333345679999999999988742 22233467899


Q ss_pred             CCcEEEecccCCCcccccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecc
Q 040471          199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLR  276 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~  276 (340)
                      +|++|+++++.- ..+.....++|++|+++++. .... .....+++|+.| .+.++.+++... ..+..+++|++|+++
T Consensus       172 ~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~-~~~~~l~~L~~L~L~  248 (330)
T 1xku_A          172 KLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL-GLSFNSISAVDN-GSLANTPHLRELHLN  248 (330)
T ss_dssp             TCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEE-ECCSSCCCEECT-TTGGGSTTCCEEECC
T ss_pred             CcCEEECCCCcc-ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEE-ECCCCcCceeCh-hhccCCCCCCEEECC
Confidence            999999998743 22322223899999999886 1111 112256788888 777776654322 124678999999999


Q ss_pred             cCCCCccccc---ccccccEEEeecCcch----hhh-----ccCCCCeeEEEEeccCCC
Q 040471          277 FCRLPEKVKI---SSNQLKNLHFNSCENL----KAI-----DTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       277 ~c~~i~~~~~---~~~~L~~L~l~~c~~l----~~~-----~~~~p~L~~L~~~~~~~~  323 (340)
                      +|. ++.++.   .+++|++|+++++.--    ..+     ....+.++.+++.|+...
T Consensus       249 ~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          249 NNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             SSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            875 445443   3689999999987531    111     112377889999987654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.01  E-value=7.1e-09  Score=97.46  Aligned_cols=177  Identities=14%  Similarity=0.120  Sum_probs=97.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCccc-----ccCcccceEecceEee--ChHHHHH
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTT-----IRLDSLKKLTLENVYI--NDQMFQK  192 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~~L~~L~L~~~~~--~~~~l~~  192 (340)
                      .++++|++..+.... .....++... .+++|++|++++|.+....+...     ..+++|+.+++.++.+  ....+..
T Consensus       220 ~~L~~L~l~~~~l~~-~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~  297 (520)
T 2z7x_B          220 PKLSNLTLNNIETTW-NSFIRILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE  297 (520)
T ss_dssp             TTCCEEEEEEEEEEH-HHHHHHHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHH
T ss_pred             cchhhccccccccCH-HHHHHHHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhc
Confidence            577788876554310 0011111111 24689999999987653233333     5678888888887765  2234444


Q ss_pred             HHhcCCCCcEEEecccCCCcccccccCCCCceEEecccc-cc-cceeeecCcCcceEeccCceeeccH-HHHHHHcCCCc
Q 040471          193 LTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KD-IGIVEIVVPSLQQQLMLTSVWFMDE-EFDRFISKFPL  269 (340)
Q Consensus       193 l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~-~~~~~~~~p~L~~ll~l~~~~i~~~-~~~~l~~~~~~  269 (340)
                      +.. .++|+.|++++|..........+++|++|+++++. .. .......+++|+.| .+.++.+++- .+...+..+++
T Consensus       298 ~~~-~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~~~~~~~l~~  375 (520)
T 2z7x_B          298 IFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL-ILQMNQLKELSKIAEMTTQMKS  375 (520)
T ss_dssp             HHH-TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEE-ECCSSCCCBHHHHHHHHTTCTT
T ss_pred             ccc-cCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEE-EccCCccCccccchHHHhhCCC
Confidence            322 35677777777653322222456777777777765 11 11111345666666 6666666552 34445666777


Q ss_pred             ccEEecccCCCCcccccc----cccccEEEeecCc
Q 040471          270 LEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCE  300 (340)
Q Consensus       270 L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~  300 (340)
                      |++|++++|..-+.++..    +++|++|++++|.
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            777777765532213321    3556666665553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.01  E-value=3.5e-09  Score=100.23  Aligned_cols=169  Identities=14%  Similarity=0.050  Sum_probs=112.5

Q ss_pred             CCCccEEEeeceeCCCCCCccc-ccCcccceEecceEeeChHHHHHH--HhcCCCCcEEEecccCCCcc----cccccCC
Q 040471          148 AKSMATLSLFGCRMEQPSDTTT-IRLDSLKKLTLENVYINDQMFQKL--TNECPSLEDFEISACWGLKN----LCVSKAH  220 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~l~~l--~~~~p~L~~L~l~~c~~~~~----~~~~~~~  220 (340)
                      .++|+.|+++++.+.. .+... ..+++|++|+++++.+++......  ...+|+|+.|++++|.--..    ..+..++
T Consensus       309 ~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          309 LEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             STTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             cccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            3567777777776643 21222 368999999999998865444332  45789999999998843221    1255688


Q ss_pred             CCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccccccccEEEeecC
Q 040471          221 KLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSC  299 (340)
Q Consensus       221 ~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c  299 (340)
                      +|+.|+++++. ..+.......++|+.+ .+.++.++.-.    ..-.++|++|++++|. ++.....+++|++|+++++
T Consensus       388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L-~Ls~N~l~~l~----~~~~~~L~~L~Ls~N~-l~~~~~~l~~L~~L~Ls~N  461 (549)
T 2z81_A          388 NLTSLDISRNTFHPMPDSCQWPEKMRFL-NLSSTGIRVVK----TCIPQTLEVLDVSNNN-LDSFSLFLPRLQELYISRN  461 (549)
T ss_dssp             TCCEEECTTCCCCCCCSCCCCCTTCCEE-ECTTSCCSCCC----TTSCTTCSEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             CCCEEECCCCCCccCChhhcccccccEE-ECCCCCccccc----chhcCCceEEECCCCC-hhhhcccCChhcEEECCCC
Confidence            99999999886 2222222346778887 77766654211    0113689999999875 5555566899999999988


Q ss_pred             cchhhhc--cCCCCeeEEEEeccCCCC
Q 040471          300 ENLKAID--TDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       300 ~~l~~~~--~~~p~L~~L~~~~~~~~~  324 (340)
                      .- ..+.  ...++|+.|++.++....
T Consensus       462 ~l-~~ip~~~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          462 KL-KTLPDASLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             CC-SSCCCGGGCTTCCEEECCSSCCCC
T ss_pred             cc-CcCCCcccCccCCEEecCCCccCC
Confidence            43 3332  246899999999976654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.00  E-value=2.8e-09  Score=102.02  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=35.3

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ++++.|+++.+..      ..+|.   ..++|++|++++|.+..-    ...+++|++|++.++.++.     +....++
T Consensus        81 ~~L~~L~Ls~N~l------~~lp~---~l~~L~~L~Ls~N~l~~l----~~~l~~L~~L~L~~N~l~~-----lp~~l~~  142 (622)
T 3g06_A           81 PELRTLEVSGNQL------TSLPV---LPPGLLELSIFSNPLTHL----PALPSGLCKLWIFGNQLTS-----LPVLPPG  142 (622)
T ss_dssp             TTCCEEEECSCCC------SCCCC---CCTTCCEEEECSCCCCCC----CCCCTTCCEEECCSSCCSC-----CCCCCTT
T ss_pred             CCCCEEEcCCCcC------CcCCC---CCCCCCEEECcCCcCCCC----CCCCCCcCEEECCCCCCCc-----CCCCCCC
Confidence            4566666655443      23443   345666666666654431    1144555555555554421     1112355


Q ss_pred             CcEEEeccc
Q 040471          200 LEDFEISAC  208 (340)
Q Consensus       200 L~~L~l~~c  208 (340)
                      |++|++++|
T Consensus       143 L~~L~Ls~N  151 (622)
T 3g06_A          143 LQELSVSDN  151 (622)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECcCC
Confidence            666666555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.00  E-value=7.3e-10  Score=105.78  Aligned_cols=145  Identities=21%  Similarity=0.138  Sum_probs=106.1

Q ss_pred             HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .++|+.|++..+..      ..++. +..+++|+.|+|++|.+..  .+....+++|+.|+|+++.+..  +. -+..++
T Consensus        64 l~~L~~L~Ls~N~l------~~~~~-l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~  131 (605)
T 1m9s_A           64 LPNVTKLFLNGNKL------TDIKP-LTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGISD--IN-GLVHLP  131 (605)
T ss_dssp             CTTCCEEECTTSCC------CCCGG-GGGCTTCCEEECCSSCCCC--CTTSTTCTTCCEEECTTSCCCC--CG-GGGGCT
T ss_pred             CCCCCEEEeeCCCC------CCChh-hccCCCCCEEECcCCCCCC--ChhhccCCCCCEEEecCCCCCC--Cc-cccCCC
Confidence            37899999866544      33444 6778999999999988765  2356778999999999998832  11 256789


Q ss_pred             CCcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEeccc
Q 040471          199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRF  277 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~  277 (340)
                      +|+.|+|++|.--..-.+..+++|+.|+++++. ..... ...+++|+.| .+.++.+++-   .-+..+++|+.|++++
T Consensus       132 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L-~Ls~N~i~~l---~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          132 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL-YLSKNHISDL---RALAGLKNLDVLELFS  206 (605)
T ss_dssp             TCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEE-ECCSSCCCBC---GGGTTCTTCSEEECCS
T ss_pred             ccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEE-ECcCCCCCCC---hHHccCCCCCEEEccC
Confidence            999999998854333345678999999999887 22222 3357888888 7887777663   2367889999999998


Q ss_pred             CCC
Q 040471          278 CRL  280 (340)
Q Consensus       278 c~~  280 (340)
                      |..
T Consensus       207 N~l  209 (605)
T 1m9s_A          207 QEC  209 (605)
T ss_dssp             EEE
T ss_pred             CcC
Confidence            764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.00  E-value=3.4e-10  Score=95.35  Aligned_cols=11  Identities=9%  Similarity=-0.091  Sum_probs=5.4

Q ss_pred             CCeeEEEEecc
Q 040471          310 PNLLSFTFSYD  320 (340)
Q Consensus       310 p~L~~L~~~~~  320 (340)
                      ++|+.|++.++
T Consensus       205 ~~L~~L~l~~N  215 (239)
T 2xwt_C          205 SGPSLLDVSQT  215 (239)
T ss_dssp             BCCSEEECTTC
T ss_pred             cCCcEEECCCC
Confidence            44555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.99  E-value=1.3e-09  Score=93.61  Aligned_cols=184  Identities=14%  Similarity=0.079  Sum_probs=116.2

Q ss_pred             HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ..++++|.+..+..      ..++ .+..+++|++|+++++.+..  .+....+++|++|++.++.++.- ....+..++
T Consensus        40 l~~L~~L~l~~~~i------~~~~-~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  109 (272)
T 3rfs_A           40 LNSIDQIIANNSDI------KSVQ-GIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSL-PNGVFDKLT  109 (272)
T ss_dssp             HTTCCEEECTTSCC------CCCT-TGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCT
T ss_pred             ccceeeeeeCCCCc------cccc-ccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCcc-ChhHhcCCc
Confidence            46888888865543      2333 46678999999999988765  24566889999999999877321 122346789


Q ss_pred             CCcEEEecccCCCcc--cccccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          199 SLEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      +|++|++++|.--..  -.+..+++|+.|+++++. .....- ...+++|+.| .+.++.+++.. ...+.++++|++|+
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~-~~~~~~l~~L~~L~  187 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL-DLSYNQLQSLP-EGVFDKLTQLKDLR  187 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE-ECCCCCcCccC-HHHhcCCccCCEEE
Confidence            999999998853221  124567899999999886 211111 1245677776 66666554321 12245677788888


Q ss_pred             cccCCCCccccc----ccccccEEEeecCcchhhhccCCCCeeEEEEec
Q 040471          275 LRFCRLPEKVKI----SSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSY  319 (340)
Q Consensus       275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~  319 (340)
                      +++|.. +.++.    .+++|+.|++.++..    ...+|+|+.+++.+
T Consensus       188 L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~l~~~~  231 (272)
T 3rfs_A          188 LYQNQL-KSVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWI  231 (272)
T ss_dssp             CCSSCC-SCCCTTTTTTCTTCCEEECCSSCB----CCCTTTTHHHHHHH
T ss_pred             CCCCcC-CccCHHHHhCCcCCCEEEccCCCc----cccCcHHHHHHHHH
Confidence            876653 33322    257777777777642    23455666555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.99  E-value=6.9e-10  Score=95.56  Aligned_cols=182  Identities=12%  Similarity=0.036  Sum_probs=122.5

Q ss_pred             cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccc
Q 040471          138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLC  215 (340)
Q Consensus       138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~  215 (340)
                      ...+|..+.  ++|++|+++++.+..........+++|++|+++++.++.-. ...+..+++|++|+++++.--.  .-.
T Consensus        19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence            445665442  57999999998875433235567899999999999773211 1224678999999999985322  123


Q ss_pred             cccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc----cc
Q 040471          216 VSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----SN  289 (340)
Q Consensus       216 ~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~  289 (340)
                      +.++++|+.|+++++. ...... ...+++|+.| .+.++.+++..+...+.++++|++|++++|. ++.++..    ++
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~  173 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL-NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH  173 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE-ECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHH
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEE-ECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhh
Confidence            5678999999999886 233322 2357888888 7777776654344456778999999999876 4443321    35


Q ss_pred             ccc----EEEeecCcch--hhhccCCCCeeEEEEeccCCCC
Q 040471          290 QLK----NLHFNSCENL--KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       290 ~L~----~L~l~~c~~l--~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      +|+    +|+++++.--  ..-....++|+.|++.++....
T Consensus       174 ~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS  214 (276)
T ss_dssp             TCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC
T ss_pred             hccccceeeecCCCcccccCccccCCCcccEEECCCCceee
Confidence            566    7888776532  1112233589999999976654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.99  E-value=1.9e-09  Score=103.08  Aligned_cols=92  Identities=21%  Similarity=0.186  Sum_probs=64.0

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..      ..+|.   .+++|++|+|++|.+.. . +  ..+++|++|+++++.++.     +....++
T Consensus        61 ~~L~~L~L~~N~l------~~lp~---~l~~L~~L~Ls~N~l~~-l-p--~~l~~L~~L~Ls~N~l~~-----l~~~l~~  122 (622)
T 3g06_A           61 AHITTLVIPDNNL------TSLPA---LPPELRTLEVSGNQLTS-L-P--VLPPGLLELSIFSNPLTH-----LPALPSG  122 (622)
T ss_dssp             TTCSEEEECSCCC------SCCCC---CCTTCCEEEECSCCCSC-C-C--CCCTTCCEEEECSCCCCC-----CCCCCTT
T ss_pred             CCCcEEEecCCCC------CCCCC---cCCCCCEEEcCCCcCCc-C-C--CCCCCCCEEECcCCcCCC-----CCCCCCC
Confidence            5889999876654      35665   46889999999988764 1 1  277999999999887732     1125789


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccc
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~  231 (340)
                      |+.|++++|. +..+.. .+++|++|+++++.
T Consensus       123 L~~L~L~~N~-l~~lp~-~l~~L~~L~Ls~N~  152 (622)
T 3g06_A          123 LCKLWIFGNQ-LTSLPV-LPPGLQELSVSDNQ  152 (622)
T ss_dssp             CCEEECCSSC-CSCCCC-CCTTCCEEECCSSC
T ss_pred             cCEEECCCCC-CCcCCC-CCCCCCEEECcCCc
Confidence            9999998874 322221 24777777777765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=2.2e-10  Score=113.40  Aligned_cols=104  Identities=12%  Similarity=0.088  Sum_probs=71.3

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeecee-CCC-CCCcc-------cccCcccceEecceEeeChHHH
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCR-MEQ-PSDTT-------TIRLDSLKKLTLENVYINDQMF  190 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-~~~~~-------~~~~~~L~~L~L~~~~~~~~~l  190 (340)
                      .+++.|++..+..     ...+|..+..+++|+.|+|++|. +.. ..+..       ...+++|+.|+++++.++  .+
T Consensus       491 ~~L~~L~Ls~N~l-----~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~i  563 (876)
T 4ecn_A          491 KDLTDVELYNCPN-----MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EF  563 (876)
T ss_dssp             TTCCEEEEESCTT-----CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BC
T ss_pred             CCCCEEECcCCCC-----CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--cc
Confidence            6899999987754     35678888889999999999886 543 12221       224558999999888775  23


Q ss_pred             HH--HHhcCCCCcEEEecccCCCccc-ccccCCCCceEEecccc
Q 040471          191 QK--LTNECPSLEDFEISACWGLKNL-CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       191 ~~--l~~~~p~L~~L~l~~c~~~~~~-~~~~~~~L~~L~i~~~~  231 (340)
                      ..  .+..+++|+.|++++|.-- .+ .+..+++|+.|+++++.
T Consensus       564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          564 PASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             CCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred             CChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence            22  4567888888888887432 22 34456777777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.98  E-value=9.6e-10  Score=92.59  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=46.5

Q ss_pred             cCccEEEEEeec-CCCCCccccCCc-cccCCCCccEEEeec-eeCCCCCCcccccCcccceEecceEeeChHHHHHHHhc
Q 040471          120 NGIKDLVLMVHN-MTQEDTVCILPQ-TIFSAKSMATLSLFG-CRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNE  196 (340)
Q Consensus       120 ~~l~~L~l~~~~-~~~~~~~~~l~~-~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~  196 (340)
                      ++++.|++..+. .      ..++. .+..+++|++|++++ +.+..........+++|++|++.++.++.  +.. +..
T Consensus        55 ~~L~~L~l~~n~~l------~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~  125 (239)
T 2xwt_C           55 PNISRIYVSIDVTL------QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTK  125 (239)
T ss_dssp             TTCCEEEEECCSSC------CEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTT
T ss_pred             CCCcEEeCCCCCCc------ceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccc
Confidence            355555555443 2      22332 333455566666655 33332111223345556666665555421  111 334


Q ss_pred             CCCCc---EEEecccCCCccc---ccccCCCCc-eEEecccc
Q 040471          197 CPSLE---DFEISACWGLKNL---CVSKAHKLK-KLAIYTFY  231 (340)
Q Consensus       197 ~p~L~---~L~l~~c~~~~~~---~~~~~~~L~-~L~i~~~~  231 (340)
                      +++|+   .|+++++..+..+   .+..+++|+ .|+++++.
T Consensus       126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred             ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence            55555   5555555333322   133445555 55555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.97  E-value=5.9e-10  Score=95.86  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=35.1

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---ccccCCC
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL---CVSKAHK  221 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~---~~~~~~~  221 (340)
                      +..+++|++|++++|.+..........+++|++|++.++.++.- ....+..+++|++|++++|. +..+   .+..+++
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTN  158 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCc-cCccCHHHhccCcc
Confidence            33445555555555544321111223445555555555444210 01112344555555555542 1111   1233455


Q ss_pred             CceEEecccc
Q 040471          222 LKKLAIYTFY  231 (340)
Q Consensus       222 L~~L~i~~~~  231 (340)
                      |+.|+++++.
T Consensus       159 L~~L~l~~n~  168 (272)
T 3rfs_A          159 LTELDLSYNQ  168 (272)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCC
Confidence            5555555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.97  E-value=8.5e-10  Score=98.95  Aligned_cols=229  Identities=11%  Similarity=0.008  Sum_probs=140.0

Q ss_pred             cccceEEEEEeccCcCCChhhHHHHHHHHHH-c-CccEEEEEeecCCCCCccccCCccccCC-CCccEEEeeceeCCCCC
Q 040471           89 FRMQELRLFQSFLDVKGSAPLLDKWIGLAVD-N-GIKDLVLMVHNMTQEDTVCILPQTIFSA-KSMATLSLFGCRMEQPS  165 (340)
Q Consensus        89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~~~~-~-~l~~L~l~~~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~  165 (340)
                      ..++.+.+....    ........+...... + ++++|+++.+... ......+...+... ++|++|++++|.+....
T Consensus        22 ~~L~~L~Ls~n~----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           22 HGVTSLDLSLNN----LYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             TTCCEEECTTSC----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CCceEEEccCCC----CChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            458888875332    111122222233332 4 7999999776541 00111222222333 89999999999876432


Q ss_pred             Ccc----cccC-cccceEecceEeeChHHHHHH---Hhc-CCCCcEEEecccCCCc----cc--ccccCC-CCceEEecc
Q 040471          166 DTT----TIRL-DSLKKLTLENVYINDQMFQKL---TNE-CPSLEDFEISACWGLK----NL--CVSKAH-KLKKLAIYT  229 (340)
Q Consensus       166 ~~~----~~~~-~~L~~L~L~~~~~~~~~l~~l---~~~-~p~L~~L~l~~c~~~~----~~--~~~~~~-~L~~L~i~~  229 (340)
                      ...    ...+ ++|++|+++++.+++.....+   +.. +++|++|++++|.--.    .+  .+...+ +|++|++++
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence            221    2234 899999999999855444443   444 5799999999984321    11  122344 999999999


Q ss_pred             ccc-ccce--e---eecC-cCcceEeccCceeeccHHHH---HHHc-CCCcccEEecccCCCCccccc--------cccc
Q 040471          230 FYK-DIGI--V---EIVV-PSLQQQLMLTSVWFMDEEFD---RFIS-KFPLLEDLLLRFCRLPEKVKI--------SSNQ  290 (340)
Q Consensus       230 ~~~-~~~~--~---~~~~-p~L~~ll~l~~~~i~~~~~~---~l~~-~~~~L~~L~l~~c~~i~~~~~--------~~~~  290 (340)
                      |.- ....  +   .... ++|+.| +++++.+++.+..   ..+. ..++|++|++++|. +++.+.        .+++
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~  254 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSL-DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKH  254 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEE-ECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTT
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEE-ECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCC
Confidence            871 1111  1   1134 589998 8888888875333   3333 35799999999875 555433        3589


Q ss_pred             ccEEEeecCc--c-----hhhhc---cCCCCeeEEEEeccCCCC
Q 040471          291 LKNLHFNSCE--N-----LKAID---TDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       291 L~~L~l~~c~--~-----l~~~~---~~~p~L~~L~~~~~~~~~  324 (340)
                      |++|++++|.  .     +..+.   ...++|+.|+++++....
T Consensus       255 L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             ccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            9999999886  1     22222   345678888888876653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.97  E-value=1.3e-09  Score=101.65  Aligned_cols=166  Identities=13%  Similarity=0.031  Sum_probs=116.6

Q ss_pred             CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeC-hHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEE
Q 040471          148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIN-DQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLA  226 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~  226 (340)
                      +++|+.|+|+++.+..........+++|++|+|+++.++ ...    +..+++|++|++++|. +..+  ...++|+.|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l--~~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQEL--LVGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEEE--EECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCCC--CCCCCcCEEE
Confidence            458999999999887644445678999999999999873 222    6789999999999983 3332  2348999999


Q ss_pred             ecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc----cccccccEEEeecCcch
Q 040471          227 IYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK----ISSNQLKNLHFNSCENL  302 (340)
Q Consensus       227 i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~----~~~~~L~~L~l~~c~~l  302 (340)
                      ++++.- ........++|+.| .+.++.+++.... .+.++++|++|++++|..-+..+    ..+++|+.|++++|.--
T Consensus       106 L~~N~l-~~~~~~~l~~L~~L-~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNI-SRVSCSRGQGKKNI-YLANNKITMLRDL-DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCC-CCEEECCCSSCEEE-ECCSSCCCSGGGB-CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcC-CCCCccccCCCCEE-ECCCCCCCCCCch-hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            999871 11112246788888 7777776653221 24568999999999876432222    23689999999988632


Q ss_pred             hhhc--cCCCCeeEEEEeccCCCC
Q 040471          303 KAID--TDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       303 ~~~~--~~~p~L~~L~~~~~~~~~  324 (340)
                       .+.  ...++|+.|+++++....
T Consensus       183 -~~~~~~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          183 -DVKGQVVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             -EEECCCCCTTCCEEECCSSCCCE
T ss_pred             -cccccccCCCCCEEECCCCCCCC
Confidence             221  135778888887766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.96  E-value=2.6e-08  Score=94.54  Aligned_cols=82  Identities=13%  Similarity=0.032  Sum_probs=43.7

Q ss_pred             cCCCCceEEecccc-cc-cceeeecCcCcceEeccCceeeccH-HHHHHHcCCCcccEEecccCCCCccccc----cccc
Q 040471          218 KAHKLKKLAIYTFY-KD-IGIVEIVVPSLQQQLMLTSVWFMDE-EFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQ  290 (340)
Q Consensus       218 ~~~~L~~L~i~~~~-~~-~~~~~~~~p~L~~ll~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~  290 (340)
                      .+++|+.|+++++. .. .......+++|+.+ .+.++.+++- .+...+.++++|++|++++|..-+.++.    .+++
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL-ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEE-ECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEE-ECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            45667777776665 11 11111245666666 6666666542 3334456777777777776653221222    1345


Q ss_pred             ccEEEeecCc
Q 040471          291 LKNLHFNSCE  300 (340)
Q Consensus       291 L~~L~l~~c~  300 (340)
                      |++|++++|.
T Consensus       430 L~~L~l~~n~  439 (562)
T 3a79_B          430 ILVLNLSSNM  439 (562)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCC
Confidence            5555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.95  E-value=2.6e-09  Score=106.43  Aligned_cols=84  Identities=17%  Similarity=0.211  Sum_probs=42.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcc--cccCcccceEecceEeeChHHHHHHHhcC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTT--TIRLDSLKKLTLENVYINDQMFQKLTNEC  197 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~~  197 (340)
                      .+++.|++..+..     ....|..+..+++|++|+|++|.+.......  ...+++|++|+++++.++.......+..+
T Consensus        73 ~~L~~L~Ls~N~l-----~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L  147 (844)
T 3j0a_A           73 PNLRILDLGSSKI-----YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL  147 (844)
T ss_dssp             TTCCEEECTTCCC-----CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred             CCCCEEECCCCcC-----cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence            3566666644433     1223445555666666666666554321111  34566666666666655322222224456


Q ss_pred             CCCcEEEeccc
Q 040471          198 PSLEDFEISAC  208 (340)
Q Consensus       198 p~L~~L~l~~c  208 (340)
                      ++|++|+++++
T Consensus       148 ~~L~~L~Ls~N  158 (844)
T 3j0a_A          148 NSLKSIDFSSN  158 (844)
T ss_dssp             SSCCEEEEESS
T ss_pred             CCCCEEECCCC
Confidence            66666666655

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.94  E-value=1.1e-09  Score=96.25  Aligned_cols=165  Identities=15%  Similarity=0.078  Sum_probs=116.0

Q ss_pred             CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeC-hHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceE
Q 040471          147 SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIN-DQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKL  225 (340)
Q Consensus       147 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L  225 (340)
                      .+++|++|+++++.+..........+++|++|+++++.++ ...    +..+++|++|++++|. +..  +...++|+.|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~~--l~~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQE--LLVGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSE-EEE--EEECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCc-ccc--ccCCCCcCEE
Confidence            4679999999999887643345678999999999998873 222    6789999999999884 332  2345899999


Q ss_pred             Eeccccccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc-----cccccccEEEeecC
Q 040471          226 AIYTFYKDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK-----ISSNQLKNLHFNSC  299 (340)
Q Consensus       226 ~i~~~~~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~-----~~~~~L~~L~l~~c  299 (340)
                      +++++.  +..+ ....++|+.+ .+.++.+++..-. .+.++++|++|++++|.. +...     ..+++|++|++++|
T Consensus       105 ~l~~n~--l~~~~~~~~~~L~~L-~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~L~~N  179 (317)
T 3o53_A          105 HAANNN--ISRVSCSRGQGKKNI-YLANNKITMLRDL-DEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLNLQYN  179 (317)
T ss_dssp             ECCSSC--CSEEEECCCSSCEEE-ECCSSCCCSGGGB-CTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEECTTS
T ss_pred             ECCCCc--cCCcCccccCCCCEE-ECCCCCCCCccch-hhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEECCCC
Confidence            999886  2222 2246788888 7777776653211 245679999999998764 3322     23589999999988


Q ss_pred             cchhhhc--cCCCCeeEEEEeccCCCC
Q 040471          300 ENLKAID--TDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       300 ~~l~~~~--~~~p~L~~L~~~~~~~~~  324 (340)
                      .-- .+.  ...++|+.|+++++....
T Consensus       180 ~l~-~~~~~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          180 FIY-DVKGQVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             CCC-EEECCCCCTTCCEEECCSSCCCE
T ss_pred             cCc-ccccccccccCCEEECCCCcCCc
Confidence            632 221  125778888887765543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.94  E-value=2.2e-09  Score=85.20  Aligned_cols=131  Identities=18%  Similarity=0.119  Sum_probs=94.5

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +++++|++..+..    .+..+|..+..+++|+.|++++|.+...  .....+++|++|+++++.++.. +..+...+++
T Consensus        24 ~~L~~L~l~~n~l----~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVLDNCKS----NDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEECCSCBC----BTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred             ccCCEEECCCCCC----ChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence            5788888877665    3347787777889999999999987653  4566789999999999988432 4455667999


Q ss_pred             CcEEEecccCCCc--c-cccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccH--HHHHHHcCCCcccEEe
Q 040471          200 LEDFEISACWGLK--N-LCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDE--EFDRFISKFPLLEDLL  274 (340)
Q Consensus       200 L~~L~l~~c~~~~--~-~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~--~~~~l~~~~~~L~~L~  274 (340)
                      |+.|++++|.--.  . -.+..+++|+.|+++++.                       +++.  .....+..+++|++|+
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-----------------------l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-----------------------VTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-----------------------GGTSTTHHHHHHTTCSSCCEET
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-----------------------CcchHHHHHHHHHhCccCcEec
Confidence            9999999884322  1 234567888888888775                       2111  1124577889999999


Q ss_pred             cccCCC
Q 040471          275 LRFCRL  280 (340)
Q Consensus       275 l~~c~~  280 (340)
                      +++|..
T Consensus       154 l~~n~~  159 (168)
T 2ell_A          154 GYDRED  159 (168)
T ss_dssp             TEETTS
T ss_pred             CCCCCh
Confidence            988763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.93  E-value=1.2e-09  Score=94.94  Aligned_cols=169  Identities=15%  Similarity=0.013  Sum_probs=81.3

Q ss_pred             CCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCceEE
Q 040471          149 KSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKKLA  226 (340)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~  226 (340)
                      ++++.|+++++.+..........+++|+.|++.++.++.-..   ...+++|+.|+++++.- ..+  .+..+++|+.|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcC-CcCchhhccCCCCCEEE
Confidence            456666666655543222234455666666666655521100   13556666666665532 111  123456666666


Q ss_pred             ecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCc
Q 040471          227 IYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCE  300 (340)
Q Consensus       227 i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~  300 (340)
                      ++++. .... .....+++|+.| .+.++.++.-. ...+..+++|++|+++++. ++.++.    .+++|+.|+++++.
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L-~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQEL-YLKGNELKTLP-PGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEE-ECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEE-ECCCCCCCccC-hhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCc
Confidence            66554 1111 111234555555 44444443211 1223456677777777554 333332    24667777776653


Q ss_pred             ch--hhhccCCCCeeEEEEeccCCCC
Q 040471          301 NL--KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       301 ~l--~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      --  ..-....++|+.+.+.|+...+
T Consensus       184 l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          184 LYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCccChhhcccccCCeEEeCCCCccC
Confidence            21  1111223566777776655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.93  E-value=1.5e-09  Score=97.34  Aligned_cols=198  Identities=14%  Similarity=0.155  Sum_probs=131.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCC-CccEEEeeceeCCCCCCccccc-----CcccceEecceEeeCh---HHH
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAK-SMATLSLFGCRMEQPSDTTTIR-----LDSLKKLTLENVYIND---QMF  190 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~---~~l  190 (340)
                      .++++|+++.+... ......+...+..++ +|++|+|++|.+..........     +++|++|+++++.+++   ..+
T Consensus        22 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            45999999766541 001111224455677 8999999999876533333333     3999999999999843   344


Q ss_pred             HHHHhcC-CCCcEEEecccCCCcccc-------ccc-CCCCceEEeccccccc---ceee---ecCc-CcceEeccCcee
Q 040471          191 QKLTNEC-PSLEDFEISACWGLKNLC-------VSK-AHKLKKLAIYTFYKDI---GIVE---IVVP-SLQQQLMLTSVW  254 (340)
Q Consensus       191 ~~l~~~~-p~L~~L~l~~c~~~~~~~-------~~~-~~~L~~L~i~~~~~~~---~~~~---~~~p-~L~~ll~l~~~~  254 (340)
                      ...+..+ ++|++|++++|.- ....       +.. +++|++|+++++.-..   ..+.   ...+ +|+.| .+.++.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L-~Ls~n~  178 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL-NLRGNN  178 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE-ECTTSC
T ss_pred             HHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe-eecCCC
Confidence            4445556 8999999999853 3221       122 3699999999987221   1111   1344 89998 888888


Q ss_pred             eccH---HHHHHHcCC-CcccEEecccCCCCcccccc---------cccccEEEeecCcch-------hhhccCCCCeeE
Q 040471          255 FMDE---EFDRFISKF-PLLEDLLLRFCRLPEKVKIS---------SNQLKNLHFNSCENL-------KAIDTDTPNLLS  314 (340)
Q Consensus       255 i~~~---~~~~l~~~~-~~L~~L~l~~c~~i~~~~~~---------~~~L~~L~l~~c~~l-------~~~~~~~p~L~~  314 (340)
                      +++.   .+...+..+ ++|++|++++|. +++.+..         .++|++|++++|.--       ..+....++|+.
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~  257 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT  257 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence            7654   445566677 499999999876 5552221         358999999987531       223345689999


Q ss_pred             EEEeccC
Q 040471          315 FTFSYDF  321 (340)
Q Consensus       315 L~~~~~~  321 (340)
                      |+++++.
T Consensus       258 L~L~~n~  264 (362)
T 3goz_A          258 VYLDYDI  264 (362)
T ss_dssp             EEEEHHH
T ss_pred             EEeccCC
Confidence            9999976

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.92  E-value=2.8e-10  Score=90.05  Aligned_cols=92  Identities=12%  Similarity=0.164  Sum_probs=74.0

Q ss_pred             CcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccc---c----CCCCceEEecccccccceeeecCcCc
Q 040471          172 LDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVS---K----AHKLKKLAIYTFYKDIGIVEIVVPSL  244 (340)
Q Consensus       172 ~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~---~----~~~L~~L~i~~~~~~~~~~~~~~p~L  244 (340)
                      -.+|+.|++++|.+++.++..+ ..|++|++|++++|..+++.++.   .    +++|++|++++|.             
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~-------------  125 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG-------------  125 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT-------------
T ss_pred             CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC-------------
Confidence            3579999999999999999886 68999999999999988775432   2    3468888888776             


Q ss_pred             ceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc
Q 040471          245 QQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS  287 (340)
Q Consensus       245 ~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~  287 (340)
                               .|+|.++..+ .++++|++|++++|+.+++.+..
T Consensus       126 ---------~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~  158 (176)
T 3e4g_A          126 ---------NVTDKGIIAL-HHFRNLKYLFLSDLPGVKEKEKI  158 (176)
T ss_dssp             ---------TCCHHHHHHG-GGCTTCCEEEEESCTTCCCHHHH
T ss_pred             ---------cCCHHHHHHH-hcCCCCCEEECCCCCCCCchHHH
Confidence                     5788888765 56899999999998888876543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.92  E-value=3.2e-09  Score=103.19  Aligned_cols=197  Identities=15%  Similarity=0.078  Sum_probs=114.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|++..+..     ....|..+..+++|++|+++++.+..-.......+++|++|+++++.++.-. ...+..+++
T Consensus        49 ~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~  122 (680)
T 1ziw_A           49 SQLTSLDVGFNTI-----SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKN  122 (680)
T ss_dssp             TTCSEEECCSSCC-----CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-SCTTTTCTT
T ss_pred             CcCcEEECCCCcc-----CccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC-hhHccccCC
Confidence            6788888865543     1233445666888888888887765422223567888888888887662110 112456888


Q ss_pred             CcEEEecccCCCcc--cccccCCCCceEEecccc-cccce--ee-ecCcCcceEeccCceeeccH---------------
Q 040471          200 LEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY-KDIGI--VE-IVVPSLQQQLMLTSVWFMDE---------------  258 (340)
Q Consensus       200 L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~-~~~~~--~~-~~~p~L~~ll~l~~~~i~~~---------------  258 (340)
                      |++|++++|.-...  -.+..+++|++|+++++. .....  +. ...++|+.+ .+.++.+++.               
T Consensus       123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL-ELSSNQIKEFSPGCFHAIGRLFGLF  201 (680)
T ss_dssp             CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE-ECTTCCCCCBCTTGGGGSSEECEEE
T ss_pred             CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE-ECCCCcccccChhhhhhhhhhhhhh
Confidence            88888888743221  134467888888888775 11111  11 134667776 4444433211               


Q ss_pred             ---------HHHHHH--cCCCcccEEecccCCCCcccccc---c--ccccEEEeecCcch---hhhccCCCCeeEEEEec
Q 040471          259 ---------EFDRFI--SKFPLLEDLLLRFCRLPEKVKIS---S--NQLKNLHFNSCENL---KAIDTDTPNLLSFTFSY  319 (340)
Q Consensus       259 ---------~~~~l~--~~~~~L~~L~l~~c~~i~~~~~~---~--~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~  319 (340)
                               ....+.  ...++|++|++++|..-+..+..   +  ++|++|++++|.--   .......|+|++|++.+
T Consensus       202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  281 (680)
T 1ziw_A          202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY  281 (680)
T ss_dssp             CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCC
Confidence                     011110  12367777777766532222221   2  45999999887532   12224568999999988


Q ss_pred             cCCC
Q 040471          320 DFNP  323 (340)
Q Consensus       320 ~~~~  323 (340)
                      +...
T Consensus       282 n~l~  285 (680)
T 1ziw_A          282 NNIQ  285 (680)
T ss_dssp             CCBS
T ss_pred             CccC
Confidence            6544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.91  E-value=9.9e-10  Score=106.78  Aligned_cols=83  Identities=13%  Similarity=0.037  Sum_probs=42.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCC-CcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPS-DTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ..++.|++..+..     ....|..+..+++|+.|+++++.+.... ......+++|++|+++++.+..-. ...+..+|
T Consensus       381 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~~~  454 (680)
T 1ziw_A          381 SPLHILNLTKNKI-----SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT-RNSFALVP  454 (680)
T ss_dssp             SCCCEEECTTSCC-----CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC-TTTTTTCT
T ss_pred             CcCceEECCCCCC-----CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC-hhhhhcCc
Confidence            4677777755443     1223344555677777777776553211 123445667777777666541100 01123455


Q ss_pred             CCcEEEeccc
Q 040471          199 SLEDFEISAC  208 (340)
Q Consensus       199 ~L~~L~l~~c  208 (340)
                      +|+.|++.++
T Consensus       455 ~L~~L~l~~n  464 (680)
T 1ziw_A          455 SLQRLMLRRV  464 (680)
T ss_dssp             TCCEEECTTS
T ss_pred             ccccchhccc
Confidence            5555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.91  E-value=3.2e-09  Score=105.74  Aligned_cols=172  Identities=15%  Similarity=0.154  Sum_probs=88.8

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|++..+..     ....+..+..+++|+.|+|+++.+..........+++|++|+++++.++.-. ...+..+++
T Consensus       266 ~~L~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~  339 (844)
T 3j0a_A          266 SSVRHLDLSHGFV-----FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPK  339 (844)
T ss_dssp             SCCCEEECTTCCC-----CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTT
T ss_pred             CCccEEECCCCcc-----cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCC
Confidence            5677777754443     1223444555677777777777654322233456677777777776652110 112345677


Q ss_pred             CcEEEecccCCCccc---ccccCCCCceEEecccc-ccc------cee----------eecCcCcceEeccCceeeccHH
Q 040471          200 LEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDI------GIV----------EIVVPSLQQQLMLTSVWFMDEE  259 (340)
Q Consensus       200 L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~------~~~----------~~~~p~L~~ll~l~~~~i~~~~  259 (340)
                      |+.|+++++.- ..+   .+..+++|+.|+++++. ...      ..+          .....+++.+ .+.++.+++-.
T Consensus       340 L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L-~ls~N~l~~l~  417 (844)
T 3j0a_A          340 VAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI-HLSENRLENLD  417 (844)
T ss_dssp             CCEEECCSCCC-CCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEE-ECCSCCCCSST
T ss_pred             CCEEECCCCCC-CccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccccccee-ecccCccccCc
Confidence            77777776632 221   23445667777776654 111      011          1112223333 55555555433


Q ss_pred             HHHHHcCCCcccEEecccCCCCc----ccccccccccEEEeecC
Q 040471          260 FDRFISKFPLLEDLLLRFCRLPE----KVKISSNQLKNLHFNSC  299 (340)
Q Consensus       260 ~~~l~~~~~~L~~L~l~~c~~i~----~~~~~~~~L~~L~l~~c  299 (340)
                      ....+.++++|++|++++|..-.    .....+++|+.|+++++
T Consensus       418 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N  461 (844)
T 3j0a_A          418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN  461 (844)
T ss_dssp             THHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred             hhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence            34445678888888888765321    11112355555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.89  E-value=4.5e-09  Score=93.01  Aligned_cols=189  Identities=13%  Similarity=0.052  Sum_probs=103.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +++++|++..+..     ....|..+..+++|++|+++++.+.. ...  ..+++|++|++.++.++.- ....+..+++
T Consensus        78 ~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~--~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~  148 (332)
T 2ft3_A           78 QHLYALVLVNNKI-----SKIHEKAFSPLRKLQKLYISKNHLVE-IPP--NLPSSLVELRIHDNRIRKV-PKGVFSGLRN  148 (332)
T ss_dssp             TTCCEEECCSSCC-----CEECGGGSTTCTTCCEEECCSSCCCS-CCS--SCCTTCCEEECCSSCCCCC-CSGGGSSCSS
T ss_pred             CCCcEEECCCCcc-----CccCHhHhhCcCCCCEEECCCCcCCc-cCc--cccccCCEEECCCCccCcc-CHhHhCCCcc
Confidence            4566666544433     11223344556666666666655442 111  1125666666666655211 0112345666


Q ss_pred             CcEEEecccCCC----cccccccCCCCceEEecccccccceeee-cCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          200 LEDFEISACWGL----KNLCVSKAHKLKKLAIYTFYKDIGIVEI-VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       200 L~~L~l~~c~~~----~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      |+.|+++++..-    ....+..+ +|+.|+++++.  +..+.. ..++|+.+ .+.++.+++... ..+.++++|++|+
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~--l~~l~~~~~~~L~~L-~l~~n~i~~~~~-~~l~~l~~L~~L~  223 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK--LTGIPKDLPETLNEL-HLDHNKIQAIEL-EDLLRYSKLYRLG  223 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB--CSSCCSSSCSSCSCC-BCCSSCCCCCCT-TSSTTCTTCSCCB
T ss_pred             CCEEECCCCccccCCCCcccccCC-ccCEEECcCCC--CCccCccccCCCCEE-ECCCCcCCccCH-HHhcCCCCCCEEE
Confidence            666666665331    11122222 66666666654  111111 12566666 666666554322 1256789999999


Q ss_pred             cccCCCCccccc----ccccccEEEeecCcchhhh---ccCCCCeeEEEEeccCCCC
Q 040471          275 LRFCRLPEKVKI----SSNQLKNLHFNSCENLKAI---DTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       275 l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~  324 (340)
                      +++|. ++.+..    .+++|++|+++++.- ..+   ....++|+.|++.++....
T Consensus       224 L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          224 LGHNQ-IRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CCSSC-CCCCCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CCCCc-CCcCChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCc
Confidence            99875 433332    368999999998753 222   2456899999999976654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.88  E-value=3e-09  Score=82.58  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=91.3

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      +++++|++..+..    ....+|..+..+++|+.|++++|.+...  .....+++|++|+++++.++.. +......+++
T Consensus        17 ~~l~~L~l~~n~l----~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSRS----NEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCBC----BTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTT
T ss_pred             ccCeEEEccCCcC----ChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCC
Confidence            5788888876655    2246777777899999999999987653  4566789999999999988432 4556677999


Q ss_pred             CcEEEecccCCCcc---cccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccH--HHHHHHcCCCcccEEe
Q 040471          200 LEDFEISACWGLKN---LCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDE--EFDRFISKFPLLEDLL  274 (340)
Q Consensus       200 L~~L~l~~c~~~~~---~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~--~~~~l~~~~~~L~~L~  274 (340)
                      |++|++++|.--..   -.+..+++|++|+++++.                       +++.  .....+..+++|++|+
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-----------------------l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-----------------------VTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-----------------------GGGSTTHHHHHHHHCTTCCEET
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-----------------------ccchHHHHHHHHHHCCCccccc
Confidence            99999998853221   235567889999888776                       2111  1123456688888888


Q ss_pred             cc
Q 040471          275 LR  276 (340)
Q Consensus       275 l~  276 (340)
                      ++
T Consensus       147 l~  148 (149)
T 2je0_A          147 GY  148 (149)
T ss_dssp             TB
T ss_pred             CC
Confidence            75

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.88  E-value=3.3e-09  Score=93.83  Aligned_cols=191  Identities=12%  Similarity=0.081  Sum_probs=124.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChH-HHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQ-MFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~p  198 (340)
                      +++++|++..+..      ..+|..++  ++|++|+++++.+..........+++|++|++.++.++.. .....+..+ 
T Consensus       102 ~~L~~L~L~~n~l------~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-  172 (332)
T 2ft3_A          102 RKLQKLYISKNHL------VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-  172 (332)
T ss_dssp             TTCCEEECCSSCC------CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-
T ss_pred             CCCCEEECCCCcC------CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-
Confidence            6899999876654      36666555  7899999999987653333467799999999999887432 112222333 


Q ss_pred             CCcEEEecccCCCcccccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecc
Q 040471          199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLR  276 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~  276 (340)
                      +|+.|+++++.- ..+...-.++|+.|+++++. .... .....+++|+.| .+.++.+++... ..+..+++|++|+++
T Consensus       173 ~L~~L~l~~n~l-~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L-~L~~N~l~~~~~-~~~~~l~~L~~L~L~  249 (332)
T 2ft3_A          173 KLNYLRISEAKL-TGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL-GLGHNQIRMIEN-GSLSFLPTLRELHLD  249 (332)
T ss_dssp             CCSCCBCCSSBC-SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC-BCCSSCCCCCCT-TGGGGCTTCCEEECC
T ss_pred             ccCEEECcCCCC-CccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE-ECCCCcCCcCCh-hHhhCCCCCCEEECC
Confidence            899999988743 22322223789999998876 2221 112256778777 777766654321 124678999999999


Q ss_pred             cCCCCccccc---ccccccEEEeecCcch----hhhc-----cCCCCeeEEEEeccCCC
Q 040471          277 FCRLPEKVKI---SSNQLKNLHFNSCENL----KAID-----TDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       277 ~c~~i~~~~~---~~~~L~~L~l~~c~~l----~~~~-----~~~p~L~~L~~~~~~~~  323 (340)
                      +|. ++.++.   .+++|++|+++++.--    ..+.     ...++|+.+++.|+...
T Consensus       250 ~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          250 NNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             CCc-CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            775 445543   3588999999886431    1111     11467889999987654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.87  E-value=7e-09  Score=95.83  Aligned_cols=52  Identities=21%  Similarity=0.126  Sum_probs=24.7

Q ss_pred             CCcccEEecccCCCCcccccccccccEEEeecCcchhhhccCCCCeeEEEEecc
Q 040471          267 FPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYD  320 (340)
Q Consensus       267 ~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~  320 (340)
                      .++|++|++++|. ++.++...++|++|++++|.- ..+....++|+.|++.++
T Consensus       256 ~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~l-~~l~~~~~~L~~L~l~~N  307 (454)
T 1jl5_A          256 PPSLEALNVRDNY-LTDLPELPQSLTFLDVSENIF-SGLSELPPNLYYLNASSN  307 (454)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC-SEESCCCTTCCEEECCSS
T ss_pred             ccccCEEECCCCc-ccccCcccCcCCEEECcCCcc-CcccCcCCcCCEEECcCC
Confidence            3556666666543 333333345666666665532 222222244555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.87  E-value=6.7e-09  Score=90.10  Aligned_cols=186  Identities=9%  Similarity=-0.009  Sum_probs=122.8

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCce
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKK  224 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~  224 (340)
                      +..+++++.++++++.+...  + ..-.++++.|+++++.++.-.. ..+..+++|+.|+++++.--..-....+++|+.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~i--p-~~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTAL--P-PDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSC--C-SCCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcC--C-CCCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence            45578899999998776541  1 1124789999999998732211 235678999999999975322112356799999


Q ss_pred             EEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecC
Q 040471          225 LAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSC  299 (340)
Q Consensus       225 L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c  299 (340)
                      |+++++. ..+.......++|+.| .+.++.++.-. ...+.++++|++|++++|. ++.++.    ..++|+.|+++++
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L-~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLP-LGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEE-ECCSSCCCCCC-SSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EECCCCcCCcCchhhccCCCCCEE-ECCCCcCcccC-HHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCC
Confidence            9999887 2222223357888888 77776665321 1235678999999999875 444433    3589999999987


Q ss_pred             cch---hhhccCCCCeeEEEEeccCCCC-cceeccccccccc
Q 040471          300 ENL---KAIDTDTPNLLSFTFSYDFNPI-PTIAMNALSMETL  337 (340)
Q Consensus       300 ~~l---~~~~~~~p~L~~L~~~~~~~~~-~~~~~~~~~~~~l  337 (340)
                      .--   ..+....++|+.|++.++.... |...+..++++.|
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l  200 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFA  200 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEE
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeE
Confidence            532   1222346899999999977654 3333333344443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.85  E-value=3.5e-09  Score=89.81  Aligned_cols=155  Identities=15%  Similarity=0.061  Sum_probs=82.5

Q ss_pred             ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--cccc
Q 040471          139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCV  216 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~  216 (340)
                      ..+|..+.  ++|+.|+++++.+..........+++|++|+++++.++.- ....+..+++|++|+++++.--.  .-.+
T Consensus        27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  103 (251)
T 3m19_A           27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQLASLPLGVF  103 (251)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcccccChhHh
Confidence            44554433  5677788877766543333455677788888877766321 11223557777788777764321  1123


Q ss_pred             ccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----cccc
Q 040471          217 SKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQ  290 (340)
Q Consensus       217 ~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~  290 (340)
                      ..+++|+.|+++++. .....- ...+++|+.| .+.++.++.-.. ..+.++++|++|+++++. ++.++.    .+++
T Consensus       104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  180 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL-RLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGK  180 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred             cccCCCCEEEcCCCcCCCcChhHhccCCcccEE-ECcCCcCCccCH-HHcCcCcCCCEEECCCCc-CCccCHHHHhCCCC
Confidence            456777777777665 111111 1134455555 444444332111 124456777777777654 333222    2466


Q ss_pred             ccEEEeecC
Q 040471          291 LKNLHFNSC  299 (340)
Q Consensus       291 L~~L~l~~c  299 (340)
                      |+.|++.++
T Consensus       181 L~~L~l~~N  189 (251)
T 3m19_A          181 LQTITLFGN  189 (251)
T ss_dssp             CCEEECCSC
T ss_pred             CCEEEeeCC
Confidence            777776654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.84  E-value=3e-08  Score=94.15  Aligned_cols=166  Identities=13%  Similarity=0.036  Sum_probs=106.4

Q ss_pred             CCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--cc--ccccCCCCce
Q 040471          149 KSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NL--CVSKAHKLKK  224 (340)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~--~~~~~~~L~~  224 (340)
                      .+|+.|+++++.+....  ....+++|++|+++++.+++... ..+..+++|+.|+++++.--.  .+  .+..+++|+.
T Consensus       331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVF-QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET  407 (562)
T ss_dssp             CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTT-TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCE
T ss_pred             CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchh-hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCE
Confidence            34666666666543311  12567889999998888744222 224678889999998874321  21  2456788999


Q ss_pred             EEecccc-cc-cc-eeeecCcCcceEeccCceeeccHHHHHHHcCC-CcccEEecccCCCCccccc---ccccccEEEee
Q 040471          225 LAIYTFY-KD-IG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKF-PLLEDLLLRFCRLPEKVKI---SSNQLKNLHFN  297 (340)
Q Consensus       225 L~i~~~~-~~-~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~c~~i~~~~~---~~~~L~~L~l~  297 (340)
                      |+++++. .. .. ......++|+.+ .++++.+++..+    ..+ ++|++|++++|. ++.++.   .+++|++|+++
T Consensus       408 L~l~~N~l~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~----~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          408 LDVSLNSLNSHAYDRTCAWAESILVL-NLSSNMLTGSVF----RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             EECTTSCCBSCCSSCCCCCCTTCCEE-ECCSSCCCGGGG----SSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECC
T ss_pred             EECCCCcCCCccChhhhcCcccCCEE-ECCCCCCCcchh----hhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECC
Confidence            9988876 11 21 123356778887 777777765332    334 689999999774 554433   35889999998


Q ss_pred             cCcchhhh----ccCCCCeeEEEEeccCCCC
Q 040471          298 SCENLKAI----DTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       298 ~c~~l~~~----~~~~p~L~~L~~~~~~~~~  324 (340)
                      ++.- ..+    ....++|+.|++.++...+
T Consensus       482 ~N~l-~~l~~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          482 SNQL-KSVPDGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             SSCC-CCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred             CCCC-CCCCHHHHhcCCCCCEEEecCCCcCC
Confidence            8753 222    2345889999998877664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.79  E-value=3.5e-08  Score=91.17  Aligned_cols=55  Identities=11%  Similarity=0.056  Sum_probs=29.4

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI  185 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  185 (340)
                      .++++|++..+..      ..+| .+..+++|++|+++++.+.. .   ....++|++|+++++.+
T Consensus       131 ~~L~~L~L~~n~l------~~lp-~~~~l~~L~~L~l~~N~l~~-l---p~~~~~L~~L~L~~n~l  185 (454)
T 1jl5_A          131 PLLEYLGVSNNQL------EKLP-ELQNSSFLKIIDVDNNSLKK-L---PDLPPSLEFIAAGNNQL  185 (454)
T ss_dssp             TTCCEEECCSSCC------SSCC-CCTTCTTCCEEECCSSCCSC-C---CCCCTTCCEEECCSSCC
T ss_pred             CCCCEEECcCCCC------CCCc-ccCCCCCCCEEECCCCcCcc-c---CCCcccccEEECcCCcC
Confidence            4677777765543      2355 35566677777777665432 1   11123555555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=5.5e-08  Score=86.82  Aligned_cols=155  Identities=13%  Similarity=0.063  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHHHhhhccCcccceEEEEEeccCcCCChhhHHHHHHHH-HHcCccEEEEEeecCC-C---CCccccCCccc
Q 040471           71 KKFMAFVDASLFRFCKLRFRMQELRLFQSFLDVKGSAPLLDKWIGLA-VDNGIKDLVLMVHNMT-Q---EDTVCILPQTI  145 (340)
Q Consensus        71 ~~~~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~l~~~-~~~~l~~L~l~~~~~~-~---~~~~~~l~~~~  145 (340)
                      ..+.+.+.+++  .......++++.+..-..........+..+...+ ..++|+.|.+...... .   ......+...+
T Consensus        91 ~~~~~~~~~fl--~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll  168 (362)
T 2ra8_A           91 EEGVNLMDKIL--KDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL  168 (362)
T ss_dssp             HTTCCHHHHHH--HCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH
T ss_pred             ccHHHHHHHHh--cCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHH
Confidence            34445566666  2233356788887643210001111333444322 2379999988432110 0   00012355556


Q ss_pred             cCCCCccEEEeecee-CCCCCCcccccCcccceEecceEeeChHHHHHHHh-cCCCCcEEEecccCC-------Cccc--
Q 040471          146 FSAKSMATLSLFGCR-MEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTN-ECPSLEDFEISACWG-------LKNL--  214 (340)
Q Consensus       146 ~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~L~~L~l~~c~~-------~~~~--  214 (340)
                      ..+++|+.|+|+++. +..   +. ...++|++|.+..+.++.+.+..+.. .+|+|++|+|..+.+       +..+  
T Consensus       169 ~~~P~L~~L~L~g~~~l~l---~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSI---GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBC---CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             hcCCCCcEEEEeCCCCcee---cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            678999999999873 221   11 24899999999998888888888764 799999999864211       2111  


Q ss_pred             --ccccCCCCceEEecccc
Q 040471          215 --CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       215 --~~~~~~~L~~L~i~~~~  231 (340)
                        ....+|+|+.|.+.+|.
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCT
T ss_pred             HHhcCCCCCcCEEeCCCCC
Confidence              11246888888887765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.75  E-value=3.1e-08  Score=84.61  Aligned_cols=143  Identities=12%  Similarity=0.056  Sum_probs=79.6

Q ss_pred             HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ..+++.|++..+..      ..++ .+..+++|+.|++++|.+...  +....+++|+.|+++++.++.  +..+ .. +
T Consensus        40 l~~L~~L~l~~n~i------~~l~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~  106 (263)
T 1xeu_A           40 LSGVQNFNGDNSNI------QSLA-GMQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKN--LNGI-PS-A  106 (263)
T ss_dssp             HTTCSEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCSC--CTTC-CC-S
T ss_pred             cCcCcEEECcCCCc------ccch-HHhhCCCCCEEECCCCccCCC--hhhccCCCCCEEECCCCccCC--cCcc-cc-C
Confidence            36777777755543      2344 455677788888877776542  125567777888877777622  1111 11 7


Q ss_pred             CCcEEEecccCCCcccccccCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEeccc
Q 040471          199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRF  277 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~  277 (340)
                      +|+.|++++|.--..-.+..+++|+.|+++++. .... ....+++|+.| .+.++.+++.   ..+..+++|+.|++++
T Consensus       107 ~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L-~L~~N~i~~~---~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          107 CLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVL-DLHGNEITNT---GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             SCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEE-ECTTSCCCBC---TTSTTCCCCCEEEEEE
T ss_pred             cccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEE-ECCCCcCcch---HHhccCCCCCEEeCCC
Confidence            777777777633222234556777777777665 1111 11134555555 5555544443   2344555566666554


Q ss_pred             CC
Q 040471          278 CR  279 (340)
Q Consensus       278 c~  279 (340)
                      +.
T Consensus       182 N~  183 (263)
T 1xeu_A          182 QK  183 (263)
T ss_dssp             EE
T ss_pred             Cc
Confidence            43

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.74  E-value=4.8e-09  Score=81.40  Aligned_cols=123  Identities=20%  Similarity=0.098  Sum_probs=69.9

Q ss_pred             CCCccEEEeeceeCC-CCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCce
Q 040471          148 AKSMATLSLFGCRME-QPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKK  224 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~  224 (340)
                      .++|+.|++++|.+. .........+++|+.|+++++.++.-   ..+..+++|+.|++++|.-...+  .+..+++|+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            367888888888765 22333445678888888887766322   33455677777777766432211  1223556666


Q ss_pred             EEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc-------ccccccEEEee
Q 040471          225 LAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI-------SSNQLKNLHFN  297 (340)
Q Consensus       225 L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~-------~~~~L~~L~l~  297 (340)
                      |+++++.                       +++-.....+.++++|++|++++|. ++..+.       .+++|+.|+++
T Consensus        93 L~ls~N~-----------------------i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNK-----------------------IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSC-----------------------CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCc-----------------------CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence            6665554                       3332222345667777888877664 333322       14666666553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.73  E-value=4.1e-09  Score=83.60  Aligned_cols=81  Identities=21%  Similarity=0.199  Sum_probs=45.9

Q ss_pred             CCCccEEEeeceeCC-CCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCce
Q 040471          148 AKSMATLSLFGCRME-QPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKK  224 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~  224 (340)
                      .++|+.|++++|.+. .........+++|+.|++.++.++.-   ..+..+++|+.|++++|.-...+  .+..+++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            367888888887765 22223345677788888777766322   33455666777776666432211  1122455555


Q ss_pred             EEecccc
Q 040471          225 LAIYTFY  231 (340)
Q Consensus       225 L~i~~~~  231 (340)
                      |+++++.
T Consensus       100 L~Ls~N~  106 (168)
T 2ell_A          100 LNLSGNK  106 (168)
T ss_dssp             EECBSSS
T ss_pred             EeccCCc
Confidence            5555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.71  E-value=8.4e-09  Score=87.48  Aligned_cols=151  Identities=17%  Similarity=0.106  Sum_probs=96.1

Q ss_pred             cCccEEEEEeecCCCCCccccC-CccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCIL-PQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .+++.|++..+..      ..+ +..+..+++|++|+++++.+..........+++|++|+++++.++.- ....+..++
T Consensus        35 ~~l~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~  107 (251)
T 3m19_A           35 ADTEKLDLQSTGL------ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLT  107 (251)
T ss_dssp             TTCCEEECTTSCC------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCT
T ss_pred             CCCCEEEccCCCc------CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccC
Confidence            3667777755443      223 33455678888888888877653333456788888888888877321 112345678


Q ss_pred             CCcEEEecccCCCccc---ccccCCCCceEEecccc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEE
Q 040471          199 SLEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDL  273 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L  273 (340)
                      +|++|+++++.- ..+   .+..+++|+.|+++++. ..... ....+++|+.| .+.++.++.... ..+..+++|++|
T Consensus       108 ~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~-~~~~~l~~L~~L  184 (251)
T 3m19_A          108 QLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL-SLSTNQLQSVPH-GAFDRLGKLQTI  184 (251)
T ss_dssp             TCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCSCCCT-TTTTTCTTCCEE
T ss_pred             CCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE-ECCCCcCCccCH-HHHhCCCCCCEE
Confidence            888888888732 222   23457888888888876 22221 11245777777 666666553221 235678999999


Q ss_pred             ecccCCC
Q 040471          274 LLRFCRL  280 (340)
Q Consensus       274 ~l~~c~~  280 (340)
                      +++++..
T Consensus       185 ~l~~N~~  191 (251)
T 3m19_A          185 TLFGNQF  191 (251)
T ss_dssp             ECCSCCB
T ss_pred             EeeCCce
Confidence            9998764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.71  E-value=1.2e-08  Score=87.22  Aligned_cols=144  Identities=12%  Similarity=0.038  Sum_probs=101.4

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCce
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKK  224 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~  224 (340)
                      +..+++|+.|+++++.+...  +....+++|+.|+++++.+++-.-   +..+++|+.|+++++.--..-.+.. ++|+.
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCE
T ss_pred             hhhcCcCcEEECcCCCcccc--hHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccE
Confidence            45578899999999877642  356678999999999988832211   6788999999999884322112333 88999


Q ss_pred             EEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCc
Q 040471          225 LAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCE  300 (340)
Q Consensus       225 L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~  300 (340)
                      |+++++. ..... ...+++|+.| .++++.+++-.   .+..+++|++|++++|. +++..  ..+++|+.|+++++.
T Consensus       111 L~L~~N~l~~~~~-l~~l~~L~~L-~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          111 LFLDNNELRDTDS-LIHLKNLEIL-SIRNNKLKSIV---MLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             EECCSSCCSBSGG-GTTCTTCCEE-ECTTSCCCBCG---GGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred             EEccCCccCCChh-hcCcccccEE-ECCCCcCCCCh---HHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence            9999886 22221 2257788887 77877776642   36778999999999875 44332  236889999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.65  E-value=8.8e-08  Score=90.60  Aligned_cols=176  Identities=12%  Similarity=0.022  Sum_probs=104.5

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..      ..+|..++  ++|++|+|++|.+.. . +  ..+++|++|+++++.++.  +.. +  ..+
T Consensus        59 ~~L~~L~Ls~n~L------~~lp~~l~--~~L~~L~Ls~N~l~~-i-p--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~  121 (571)
T 3cvr_A           59 NQFSELQLNRLNL------SSLPDNLP--PQITVLEITQNALIS-L-P--ELPASLEYLDACDNRLST--LPE-L--PAS  121 (571)
T ss_dssp             TTCSEEECCSSCC------SCCCSCCC--TTCSEEECCSSCCSC-C-C--CCCTTCCEEECCSSCCSC--CCC-C--CTT
T ss_pred             CCccEEEeCCCCC------CccCHhHc--CCCCEEECcCCCCcc-c-c--cccCCCCEEEccCCCCCC--cch-h--hcC
Confidence            4788888765544      33665543  678888888877663 2 2  457888888888877632  111 1  227


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCC
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCR  279 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~  279 (340)
                      |+.|+++++.- ..+.. .+++|+.|+++++.  +..+....++|+.| .+.++.+++  +.. +.  ++|++|++++|.
T Consensus       122 L~~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L-~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          122 LKHLDVDNNQL-TMLPE-LPALLEYINADNNQ--LTMLPELPTSLEVL-SVRNNQLTF--LPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             CCEEECCSSCC-SCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEE-ECCSSCCSC--CCC-CC--TTCCEEECCSSC
T ss_pred             CCEEECCCCcC-CCCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEE-ECCCCCCCC--cch-hh--CCCCEEECcCCC
Confidence            88888887632 22322 46788888888776  11122245677776 666666554  111 22  788888888664


Q ss_pred             CCcccccccccc-------cEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          280 LPEKVKISSNQL-------KNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       280 ~i~~~~~~~~~L-------~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                       ++.++.-.++|       +.|+++++.--   ..+ ...++|+.|++.++....
T Consensus       192 -L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l-~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          192 -LESLPAVPVRNHHSEETEIFFRCRENRITHIPENI-LSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             -CSSCCCCC--------CCEEEECCSSCCCCCCGGG-GGSCTTEEEECCSSSCCH
T ss_pred             -CCchhhHHHhhhcccccceEEecCCCcceecCHHH-hcCCCCCEEEeeCCcCCC
Confidence             44444422356       88888776421   112 236788888888866643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.65  E-value=2.6e-08  Score=88.76  Aligned_cols=188  Identities=11%  Similarity=0.040  Sum_probs=89.0

Q ss_pred             cCccEEEEEeecCCCCCccccCCcc-ccCCCCccEEEeeceeCCCCCC-cccccCcccceEecce-EeeChHHHHHHHhc
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQT-IFSAKSMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLEN-VYINDQMFQKLTNE  196 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~  196 (340)
                      .++++|++..+..      ..+|.. +..+++|++|+|+++.+..... ..+.++++|+.+...+ +.+..- ....+..
T Consensus        30 ~~l~~L~Ls~N~i------~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~  102 (350)
T 4ay9_X           30 RNAIELRFVLTKL------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQN  102 (350)
T ss_dssp             TTCSEEEEESCCC------SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCC
T ss_pred             CCCCEEEccCCcC------CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhh
Confidence            4667777665543      345543 3446777777777765422111 1233455555433322 222100 0112345


Q ss_pred             CCCCcEEEecccCCC--cccccccCCCCceEEecccccccceee----ecCc-CcceEeccCceeeccHHHHHHHcCCCc
Q 040471          197 CPSLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKDIGIVE----IVVP-SLQQQLMLTSVWFMDEEFDRFISKFPL  269 (340)
Q Consensus       197 ~p~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~~~~~~----~~~p-~L~~ll~l~~~~i~~~~~~~l~~~~~~  269 (340)
                      +++|+.|+++++.-.  .........++..|++.++. .+..+.    ...+ .++.+ .+.+..++.-.  .-....++
T Consensus       103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L-~L~~N~i~~i~--~~~f~~~~  178 (350)
T 4ay9_X          103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVIL-WLNKNGIQEIH--NSAFNGTQ  178 (350)
T ss_dssp             CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEE-ECCSSCCCEEC--TTSSTTEE
T ss_pred             ccccccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhh-ccccccccCCC--hhhccccc
Confidence            677777777665321  11112223455555554433 111111    1122 23333 55554443211  01113456


Q ss_pred             ccEEecccCCCCccccc----ccccccEEEeecCcchhhhccC-CCCeeEEEEec
Q 040471          270 LEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENLKAIDTD-TPNLLSFTFSY  319 (340)
Q Consensus       270 L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~~~~-~p~L~~L~~~~  319 (340)
                      |++|.+.++..++.++.    .+++|+.|+++++. +..+... ..+|++|...+
T Consensus       179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~  232 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARS  232 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTT
T ss_pred             hhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhcc
Confidence            77777776666666553    24677888877763 3444332 35666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.64  E-value=1e-08  Score=92.16  Aligned_cols=159  Identities=15%  Similarity=0.166  Sum_probs=94.7

Q ss_pred             HHHcCccEEEEEeecCCCCCccccCCccccC-CCCccEEEeeceeCCCCCC-cccccCcccceEecceEeeChHHHHHHH
Q 040471          117 AVDNGIKDLVLMVHNMTQEDTVCILPQTIFS-AKSMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLENVYINDQMFQKLT  194 (340)
Q Consensus       117 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~  194 (340)
                      .....+++|++..+... ......+...+.. +++|+.|+|++|.++.... .....+++|+.|+|+++.+++.....+.
T Consensus        69 ~~~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HHHTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            34467787777554431 0012223333332 3578888888776643211 1223456778888888777666555543


Q ss_pred             ----hcCCCCcEEEecccCCCccc-------ccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHH---H
Q 040471          195 ----NECPSLEDFEISACWGLKNL-------CVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEE---F  260 (340)
Q Consensus       195 ----~~~p~L~~L~l~~c~~~~~~-------~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~---~  260 (340)
                          ..+++|++|++++|. ++..       .+..+++|++|+++++.                       +++.+   +
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-----------------------l~~~g~~~L  203 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-----------------------LGDEGLELL  203 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-----------------------CHHHHHHHH
T ss_pred             HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-----------------------CCcHHHHHH
Confidence                246777777777773 2221       11234666666666554                       55554   3


Q ss_pred             HHHHcCCCcccEEecccCCCCccccc--------ccccccEEEeecCcc
Q 040471          261 DRFISKFPLLEDLLLRFCRLPEKVKI--------SSNQLKNLHFNSCEN  301 (340)
Q Consensus       261 ~~l~~~~~~L~~L~l~~c~~i~~~~~--------~~~~L~~L~l~~c~~  301 (340)
                      ...+...++|++|++++|. +++.+.        .+++|++|++++|.-
T Consensus       204 ~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          204 AAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            4456778899999999875 554332        258899999998853

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.62  E-value=5.5e-09  Score=85.28  Aligned_cols=86  Identities=20%  Similarity=0.185  Sum_probs=40.2

Q ss_pred             CCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCC
Q 040471          141 LPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAH  220 (340)
Q Consensus       141 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~  220 (340)
                      +|..+..+++|+.|+++++.+.. . +....+++|+.|+++++.++  .+......+|+|+.|++++|.--..-.+..++
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~-l-~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~  115 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEK-I-SSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLV  115 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESC-C-CCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred             hhHHHhcCCCCCEEECCCCCCcc-c-cccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence            33345555566666666655443 1 23444566666666665552  11222333455555555555221111223344


Q ss_pred             CCceEEeccc
Q 040471          221 KLKKLAIYTF  230 (340)
Q Consensus       221 ~L~~L~i~~~  230 (340)
                      +|+.|+++++
T Consensus       116 ~L~~L~l~~N  125 (198)
T 1ds9_A          116 NLRVLYMSNN  125 (198)
T ss_dssp             HSSEEEESEE
T ss_pred             CCCEEECCCC
Confidence            5555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.59  E-value=2.3e-08  Score=82.12  Aligned_cols=90  Identities=22%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--cccc
Q 040471          139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCV  216 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~  216 (340)
                      ..+|..+  .++|++|+++++.+..........+++|++|++.++.++.- ....+..+++|++|+++++.--.  ...+
T Consensus        20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence            3444433  35788888888776542222345678888888887766311 11224567788888887763221  1123


Q ss_pred             ccCCCCceEEecccc
Q 040471          217 SKAHKLKKLAIYTFY  231 (340)
Q Consensus       217 ~~~~~L~~L~i~~~~  231 (340)
                      ..+++|+.|+++++.
T Consensus        97 ~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           97 DKLTQLKELALNTNQ  111 (208)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCccCCCEEEcCCCc
Confidence            456777777777664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.57  E-value=2.7e-07  Score=87.27  Aligned_cols=169  Identities=13%  Similarity=0.023  Sum_probs=112.6

Q ss_pred             CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEe
Q 040471          148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAI  227 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i  227 (340)
                      +.+|+.|+++++.+.. .+..  -+++|++|+|+++.++.  +.   ..+++|+.|++++|. +..+.. -..+|+.|++
T Consensus        58 ~~~L~~L~Ls~n~L~~-lp~~--l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~L  127 (571)
T 3cvr_A           58 INQFSELQLNRLNLSS-LPDN--LPPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPE-LPASLKHLDV  127 (571)
T ss_dssp             HTTCSEEECCSSCCSC-CCSC--CCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC-CCTTCCEEEC
T ss_pred             cCCccEEEeCCCCCCc-cCHh--HcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcch-hhcCCCEEEC
Confidence            3589999999988754 2221  25899999999998842  22   568999999999983 332321 1239999999


Q ss_pred             cccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccccccccEEEeecCcchhhhc
Q 040471          228 YTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAID  306 (340)
Q Consensus       228 ~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c~~l~~~~  306 (340)
                      +++. ..+..   .+++|+.| .++++.++.     +...+++|++|++++|. ++.++.-.++|+.|+++++. +..+.
T Consensus       128 s~N~l~~lp~---~l~~L~~L-~Ls~N~l~~-----lp~~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~-L~~lp  196 (571)
T 3cvr_A          128 DNNQLTMLPE---LPALLEYI-NADNNQLTM-----LPELPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNL-LESLP  196 (571)
T ss_dssp             CSSCCSCCCC---CCTTCCEE-ECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCC
T ss_pred             CCCcCCCCCC---cCccccEE-eCCCCccCc-----CCCcCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCC-CCchh
Confidence            9887 23222   67888888 777777654     12267899999999876 44444423899999999874 33333


Q ss_pred             cCCCCe-------eEEEEeccCCCC-cceeccccccccc
Q 040471          307 TDTPNL-------LSFTFSYDFNPI-PTIAMNALSMETL  337 (340)
Q Consensus       307 ~~~p~L-------~~L~~~~~~~~~-~~~~~~~~~~~~l  337 (340)
                      .-.++|       +.|++.++.... |...+..++++.|
T Consensus       197 ~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L  235 (571)
T 3cvr_A          197 AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTI  235 (571)
T ss_dssp             CCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEE
T ss_pred             hHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEE
Confidence            322377       999999977664 4333334445444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.55  E-value=6e-08  Score=79.64  Aligned_cols=105  Identities=18%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             cCccEEEEEeecCCCCCccccCCcc-ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQT-IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .++++|++..+..      ..++.. +..+++|++|+++++.+..........+++|++|+++++.++.- ....+..++
T Consensus        28 ~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~  100 (208)
T 2o6s_A           28 AQTTYLDLETNSL------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLT  100 (208)
T ss_dssp             TTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred             CCCcEEEcCCCcc------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCcc
Confidence            3678888766544      344444 45689999999999877643222346789999999998877321 112346789


Q ss_pred             CCcEEEecccCCCc--ccccccCCCCceEEecccc
Q 040471          199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~  231 (340)
                      +|++|+++++.--.  .-.+..+++|+.|+++++.
T Consensus       101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A          101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc
Confidence            99999998874321  1124567889999998775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.51  E-value=1.2e-07  Score=79.22  Aligned_cols=90  Identities=16%  Similarity=0.081  Sum_probs=58.1

Q ss_pred             cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---
Q 040471          138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL---  214 (340)
Q Consensus       138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~---  214 (340)
                      ...+|..+.  ++|+.|+++++.+..........+++|+.|+|+++.+..- ....+..+++|+.|+++++.- ..+   
T Consensus        31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~  106 (229)
T 3e6j_A           31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPSA  106 (229)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTT
T ss_pred             cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccChh
Confidence            345555443  7788888888877653334456778888888888876211 012345678888888887732 222   


Q ss_pred             ccccCCCCceEEecccc
Q 040471          215 CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       215 ~~~~~~~L~~L~i~~~~  231 (340)
                      .+..+++|+.|+++++.
T Consensus       107 ~~~~l~~L~~L~Ls~N~  123 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNK  123 (229)
T ss_dssp             TTTTCTTCCEEECCSSC
T ss_pred             HhCcchhhCeEeccCCc
Confidence            23456788888888765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.46  E-value=3.2e-07  Score=76.04  Aligned_cols=91  Identities=11%  Similarity=0.076  Sum_probs=54.5

Q ss_pred             cccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--cccc
Q 040471          138 VCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLC  215 (340)
Q Consensus       138 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~  215 (340)
                      ...+|..+.  ++|+.|+++++.+..........+++|+.|+|+++.++.-. ...+..+++|++|+++++.--  ..-.
T Consensus        23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~   99 (220)
T 2v9t_B           23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSL   99 (220)
T ss_dssp             CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred             cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhH
Confidence            345555443  57888888887765422224456788888888887663211 112456778888888876322  1112


Q ss_pred             cccCCCCceEEecccc
Q 040471          216 VSKAHKLKKLAIYTFY  231 (340)
Q Consensus       216 ~~~~~~L~~L~i~~~~  231 (340)
                      +..+++|+.|+++++.
T Consensus       100 f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANK  115 (220)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             ccCCCCCCEEECCCCC
Confidence            3456777777777665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.40  E-value=3.6e-07  Score=72.84  Aligned_cols=81  Identities=12%  Similarity=0.020  Sum_probs=41.7

Q ss_pred             ccCCCCccEEEeeceeCCCCCCccccc-CcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccc---cccCC
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIR-LDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLC---VSKAH  220 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~---~~~~~  220 (340)
                      +..+.+|+.|++++|.+.. . +.... .++|+.|+++++.++.-   ..+..+++|+.|+++++.- ..+.   +..++
T Consensus        15 ~~~~~~L~~L~l~~n~l~~-i-~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV-I-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS-C-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC-CEECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCCCCch-h-HHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc-cccCcchhhcCC
Confidence            3445666777776665543 1 22222 33666666666655321   1234566666666666532 2221   13456


Q ss_pred             CCceEEecccc
Q 040471          221 KLKKLAIYTFY  231 (340)
Q Consensus       221 ~L~~L~i~~~~  231 (340)
                      +|+.|+++++.
T Consensus        89 ~L~~L~L~~N~   99 (176)
T 1a9n_A           89 DLTELILTNNS   99 (176)
T ss_dssp             TCCEEECCSCC
T ss_pred             CCCEEECCCCc
Confidence            66666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.38  E-value=1.8e-06  Score=82.65  Aligned_cols=151  Identities=19%  Similarity=0.122  Sum_probs=92.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .++++|+++.+..      ..+++ .+..+++|++|+|++|.+..-....+.++++|++|+|+++.++.-. ...+..++
T Consensus        52 ~~~~~LdLs~N~i------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~  124 (635)
T 4g8a_A           52 FSTKNLDLSFNPL------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLS  124 (635)
T ss_dssp             TTCCEEECTTSCC------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCT
T ss_pred             cCCCEEEeeCCCC------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCC
Confidence            3678888866544      44554 4566888999999988765422223567888999999888762211 12356788


Q ss_pred             CCcEEEecccCC--CcccccccCCCCceEEecccc-ccc--ceeeecCcCcceEeccCceeec---cHHHHHHHcCCCcc
Q 040471          199 SLEDFEISACWG--LKNLCVSKAHKLKKLAIYTFY-KDI--GIVEIVVPSLQQQLMLTSVWFM---DEEFDRFISKFPLL  270 (340)
Q Consensus       199 ~L~~L~l~~c~~--~~~~~~~~~~~L~~L~i~~~~-~~~--~~~~~~~p~L~~ll~l~~~~i~---~~~~~~l~~~~~~L  270 (340)
                      +|++|++++|.-  +....+..+++|+.|+++++. ...  ......+++|+.+ .+.++.++   ...+..+......+
T Consensus       125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L-~L~~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL-DLSSNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE-ECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh-cccCccccccccccccchhhhhhhh
Confidence            899999988743  222345677889999988876 111  1222346777777 66655543   23444433333344


Q ss_pred             cEEecccC
Q 040471          271 EDLLLRFC  278 (340)
Q Consensus       271 ~~L~l~~c  278 (340)
                      ..++++.+
T Consensus       204 ~~~~ls~n  211 (635)
T 4g8a_A          204 LSLDLSLN  211 (635)
T ss_dssp             CEEECTTC
T ss_pred             hhhhcccC
Confidence            45666543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.37  E-value=1.4e-07  Score=75.36  Aligned_cols=62  Identities=15%  Similarity=0.021  Sum_probs=44.5

Q ss_pred             ccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEecccc
Q 040471          168 TTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       168 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~  231 (340)
                      ....+++|+.|++.++.++.  +..+....|+|+.|+++++.--..-.+..+++|+.|+++++.
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSC
T ss_pred             hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCc
Confidence            34568899999999988742  233455566999999998743222245567899999998876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.37  E-value=3e-07  Score=76.26  Aligned_cols=105  Identities=18%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .++++|++..+..      ..++. .+..+++|+.|+|+++.+..........+++|++|+|+++.++. ....++..++
T Consensus        32 ~~l~~L~l~~n~i------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~  104 (220)
T 2v9t_B           32 ETITEIRLEQNTI------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLF  104 (220)
T ss_dssp             TTCCEEECCSSCC------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCT
T ss_pred             cCCCEEECCCCcC------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCC
Confidence            4678888765544      33443 45568899999999987754333456678999999999988731 1122346789


Q ss_pred             CCcEEEecccCCCc--ccccccCCCCceEEecccc
Q 040471          199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~  231 (340)
                      +|+.|+++++.--.  .-.+..+++|+.|+++++.
T Consensus       105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B          105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc
Confidence            99999999874321  2234567888888888775

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.35  E-value=1.7e-06  Score=77.13  Aligned_cols=133  Identities=17%  Similarity=0.125  Sum_probs=76.3

Q ss_pred             HHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEecccccc---cceee-ecCcCcceEeccC--cee-ecc---H
Q 040471          189 MFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKD---IGIVE-IVVPSLQQQLMLT--SVW-FMD---E  258 (340)
Q Consensus       189 ~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~---~~~~~-~~~p~L~~ll~l~--~~~-i~~---~  258 (340)
                      .+..++..+|+|++|.+++|.++....+ ..++|++|.+..|.-.   ...+. ..+|+|+.| .+.  ... ..+   .
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L-~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL-VLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEE-EEECBCGGGTCCSCGG
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEE-EEeccccccccchhHH
Confidence            3556677788888888887743322122 3578888888766511   11122 256777777 321  111 111   1


Q ss_pred             HHHHHH--cCCCcccEEecccCCCCccc----c--cccccccEEEeecCcch----hhhcc---CCCCeeEEEEeccCCC
Q 040471          259 EFDRFI--SKFPLLEDLLLRFCRLPEKV----K--ISSNQLKNLHFNSCENL----KAIDT---DTPNLLSFTFSYDFNP  323 (340)
Q Consensus       259 ~~~~l~--~~~~~L~~L~l~~c~~i~~~----~--~~~~~L~~L~l~~c~~l----~~~~~---~~p~L~~L~~~~~~~~  323 (340)
                      .+..++  ..+|+|++|.+.+|...+..    .  ..+|+|++|+++.+.--    ..+..   ..|+|+.|++.++...
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            222223  35899999999877642211    1  13689999999765421    12322   3488999999876554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.31  E-value=6.9e-07  Score=85.62  Aligned_cols=151  Identities=11%  Similarity=0.024  Sum_probs=77.8

Q ss_pred             cCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--cccccccCCCCceEEecccccc---cceeeecCcCcc
Q 040471          171 RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFYKD---IGIVEIVVPSLQ  245 (340)
Q Consensus       171 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~~~---~~~~~~~~p~L~  245 (340)
                      .+++|+.+++..+......-...+..+++++.++++++..-  ..-....++.|+.|+++++...   .......+++|+
T Consensus       418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~  497 (635)
T 4g8a_A          418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  497 (635)
T ss_dssp             TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence            44555555555444311111112344555666665554321  1112334577777777766411   111122456666


Q ss_pred             eEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCcch----hhhccCCCCeeEEEE
Q 040471          246 QQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENL----KAIDTDTPNLLSFTF  317 (340)
Q Consensus       246 ~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l----~~~~~~~p~L~~L~~  317 (340)
                      .| +++++.+++-. ...+.++++|++|++++|. ++.++.    .+++|+.|+++++.-.    ..+..-.++|+.|++
T Consensus       498 ~L-~Ls~N~L~~l~-~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          498 FL-DLSQCQLEQLS-PTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             EE-ECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             EE-ECCCCccCCcC-hHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence            66 66666554321 1224567888888888764 333322    2477888888776432    111111257888888


Q ss_pred             eccCCCC
Q 040471          318 SYDFNPI  324 (340)
Q Consensus       318 ~~~~~~~  324 (340)
                      .|++..+
T Consensus       575 ~~Np~~C  581 (635)
T 4g8a_A          575 TQNDFAC  581 (635)
T ss_dssp             TTCCBCC
T ss_pred             eCCCCcc
Confidence            8776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.31  E-value=7.5e-07  Score=73.80  Aligned_cols=81  Identities=15%  Similarity=0.101  Sum_probs=43.1

Q ss_pred             CccEEEeeceeCCCCCC-cccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccccccCCCCceEE
Q 040471          150 SMATLSLFGCRMEQPSD-TTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCVSKAHKLKKLA  226 (340)
Q Consensus       150 ~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~  226 (340)
                      .++.|+++++.+..... .....+++|+.|+|.++.++.-. ...+..+++|++|+++++.-..  .-.+..+++|++|+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            45667777665543111 12345677777777766552110 1123456677777777653321  11244566777777


Q ss_pred             ecccc
Q 040471          227 IYTFY  231 (340)
Q Consensus       227 i~~~~  231 (340)
                      ++++.
T Consensus       112 Ls~N~  116 (220)
T 2v70_A          112 LRSNR  116 (220)
T ss_dssp             CTTSC
T ss_pred             CCCCc
Confidence            76654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.31  E-value=3.6e-07  Score=82.01  Aligned_cols=136  Identities=15%  Similarity=0.067  Sum_probs=89.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCccc-----ccCcccceEecceEeeChHHHHHH-
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTT-----IRLDSLKKLTLENVYINDQMFQKL-  193 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~~L~~L~L~~~~~~~~~l~~l-  193 (340)
                      .++++|+++.+..    .+..+......+++|++|+|++|.+........     ...++|++|+|++|.+++.+...+ 
T Consensus       101 ~~L~~L~Ls~n~l----~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNLASCQL----DPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEECTTCCC----CHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCceEEEecCCCC----CHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            5899999976654    333333333346789999999998754221111     246889999999999976665554 


Q ss_pred             --HhcCCCCcEEEecccCCCccc-------ccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHH---HH
Q 040471          194 --TNECPSLEDFEISACWGLKNL-------CVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEE---FD  261 (340)
Q Consensus       194 --~~~~p~L~~L~l~~c~~~~~~-------~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~---~~  261 (340)
                        +..+++|++|++++|. +.+.       .+...++|+.|++++|.                       |++.+   +.
T Consensus       177 ~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-----------------------i~~~g~~~l~  232 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-----------------------AGDTAALALA  232 (372)
T ss_dssp             HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-----------------------CCHHHHHHHH
T ss_pred             HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-----------------------CCHHHHHHHH
Confidence              4679999999999985 3321       23345788888888776                       44433   23


Q ss_pred             HHHcCCCcccEEecccCCCCccc
Q 040471          262 RFISKFPLLEDLLLRFCRLPEKV  284 (340)
Q Consensus       262 ~l~~~~~~L~~L~l~~c~~i~~~  284 (340)
                      ..+...++|++|++++|. +++.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~-i~~~  254 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNE-LSSE  254 (372)
T ss_dssp             HHHHHCSSCCEEECTTSS-CCHH
T ss_pred             HHHHhCCCCCEEeccCCC-CCHH
Confidence            334456777777777654 4433

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.30  E-value=2.6e-07  Score=78.95  Aligned_cols=38  Identities=21%  Similarity=0.443  Sum_probs=35.2

Q ss_pred             CccCCCchhHHHHHhcCCchhhhh-hhhcccccchhhhc
Q 040471            8 DRITELPTFIIHHIMSYLSAKEIA-RTSILSKRWCLFCI   45 (340)
Q Consensus         8 d~i~~LPd~il~~Ifs~L~~~d~~-~~s~vskrW~~l~~   45 (340)
                      ..+..||||++.+||+|||.++++ +|+.|||+|+.+..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            468999999999999999999999 99999999998754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.29  E-value=1.4e-07  Score=79.71  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=33.4

Q ss_pred             CccCCCchhHHHHHhcCCchhhhhhhhcccccchhh
Q 040471            8 DRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLF   43 (340)
Q Consensus         8 d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l   43 (340)
                      ..|+.||+||+++||+||+++|+++++.|||+||.+
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            348899999999999999999999999999999963

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.24  E-value=7.4e-07  Score=79.66  Aligned_cols=155  Identities=20%  Similarity=0.142  Sum_probs=77.1

Q ss_pred             ccCCccccCCCCccEEEeeceeCCCCCCcccc-cCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---
Q 040471          139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTI-RLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL---  214 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~---  214 (340)
                      ..+|..+.  ++++.|+|+++.+......... .+++|+.|+|+++.++.-. ...+..+++|++|+++++. +..+   
T Consensus        31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~  106 (361)
T 2xot_A           31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEF  106 (361)
T ss_dssp             SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred             CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHH
Confidence            34454332  3467777777665432112223 5677777777766652111 1123456777777777654 2222   


Q ss_pred             ccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHH--HHHcCCCcccEEecccCCCCcccccc---
Q 040471          215 CVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFD--RFISKFPLLEDLLLRFCRLPEKVKIS---  287 (340)
Q Consensus       215 ~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~--~l~~~~~~L~~L~l~~c~~i~~~~~~---  287 (340)
                      .+..+++|+.|+++++. .... .....+++|+.| .+.++.++.-...  .-...+++|++|+++++. ++.++..   
T Consensus       107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~  184 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL-YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQ  184 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE-ECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHH
T ss_pred             HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE-ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhh
Confidence            23456677777777665 1111 111234566665 5555544431111  011457788888888654 4444322   


Q ss_pred             -ccc--ccEEEeecC
Q 040471          288 -SNQ--LKNLHFNSC  299 (340)
Q Consensus       288 -~~~--L~~L~l~~c  299 (340)
                       ++.  |+.|++.++
T Consensus       185 ~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          185 KLPAWVKNGLYLHNN  199 (361)
T ss_dssp             HSCHHHHTTEECCSS
T ss_pred             hccHhhcceEEecCC
Confidence             233  366777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.20  E-value=8.6e-07  Score=79.24  Aligned_cols=150  Identities=16%  Similarity=0.070  Sum_probs=80.2

Q ss_pred             CccEEEEEeecCCCCCccccCCcccc--CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQTIF--SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .++.|+++.+..      ..++...+  .+++|+.|+|+++.+..........+++|+.|+|+++.++.- ....+..++
T Consensus        40 ~l~~L~Ls~N~l------~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~  112 (361)
T 2xot_A           40 YTALLDLSHNNL------SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQ  112 (361)
T ss_dssp             TCSEEECCSSCC------CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred             CCCEEECCCCCC------CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCc
Confidence            456666654433      23333332  567788888877766442222345677788888777766211 112245677


Q ss_pred             CCcEEEecccCCCc--ccccccCCCCceEEecccc-cccceee----ecCcCcceEeccCceeeccHHHHHHHcCCCc--
Q 040471          199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY-KDIGIVE----IVVPSLQQQLMLTSVWFMDEEFDRFISKFPL--  269 (340)
Q Consensus       199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~-~~~~~~~----~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~--  269 (340)
                      +|+.|+++++....  .-.+..+++|+.|+++++. ..+..-.    ...++|+.| ++.++.++.-... .+..++.  
T Consensus       113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L-~L~~N~l~~l~~~-~~~~l~~~~  190 (361)
T 2xot_A          113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLL-DLSSNKLKKLPLT-DLQKLPAWV  190 (361)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEE-ECCSSCCCCCCHH-HHHHSCHHH
T ss_pred             CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEE-ECCCCCCCccCHH-HhhhccHhh
Confidence            77888777764321  1234456777777777765 1111111    235667666 6666555432221 1223444  


Q ss_pred             ccEEecccCC
Q 040471          270 LEDLLLRFCR  279 (340)
Q Consensus       270 L~~L~l~~c~  279 (340)
                      |+.|++++++
T Consensus       191 l~~l~l~~N~  200 (361)
T 2xot_A          191 KNGLYLHNNP  200 (361)
T ss_dssp             HTTEECCSSC
T ss_pred             cceEEecCCC
Confidence            3667776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.20  E-value=1.4e-06  Score=72.15  Aligned_cols=143  Identities=13%  Similarity=0.007  Sum_probs=83.9

Q ss_pred             cEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccccccCCCCceEEecc
Q 040471          152 ATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCVSKAHKLKKLAIYT  229 (340)
Q Consensus       152 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~  229 (340)
                      +.++++++.+..-  + ..-.+.++.|+++++.++.-.....+..+++|+.|+++++.--.  .-.+..+++|+.|++++
T Consensus        14 ~~l~~s~n~l~~i--P-~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKI--P-EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSC--C-SCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccC--c-cCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            5778887765431  1 12245689999999887432112235679999999999875321  22356789999999998


Q ss_pred             cc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccc-c---cccccccEEEeecCc
Q 040471          230 FY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKV-K---ISSNQLKNLHFNSCE  300 (340)
Q Consensus       230 ~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~-~---~~~~~L~~L~l~~c~  300 (340)
                      +. ..... ....+++|+.| .+.++.++.... ..+.++++|++|+++++. ++.+ +   ..+++|+.|++.+++
T Consensus        91 N~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTL-MLRSNRITCVGN-DSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEE-ECTTSCCCCBCT-TSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCccCHhHhcCCcCCCEE-ECCCCcCCeECH-hHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence            86 22111 11245666666 555555443211 123456777777777654 3322 1   124667777776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.17  E-value=2.7e-06  Score=75.59  Aligned_cols=191  Identities=10%  Similarity=0.025  Sum_probs=115.5

Q ss_pred             cCccEEEEEeecCCCCCccccCCccc-cCCCCccEEEe-eceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTI-FSAKSMATLSL-FGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNEC  197 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~-~~~~~L~~L~L-~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~  197 (340)
                      .++++|+++.+..     ...+|... .++++++.+.. .++.+..-.......+++|++|++.++.+..-. .......
T Consensus        54 ~~L~~L~Ls~N~i-----~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-~~~~~~~  127 (350)
T 4ay9_X           54 GDLEKIEISQNDV-----LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-DVHKIHS  127 (350)
T ss_dssp             TTCCEEEEECCTT-----CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-CCTTCCB
T ss_pred             CCCCEEECcCCCC-----CCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCC-chhhccc
Confidence            5899999987754     13344443 45677766444 444443322234567899999999998772110 0112345


Q ss_pred             CCCcEEEecccCCCccccc---ccC-CCCceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccE
Q 040471          198 PSLEDFEISACWGLKNLCV---SKA-HKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLED  272 (340)
Q Consensus       198 p~L~~L~l~~c~~~~~~~~---~~~-~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~  272 (340)
                      .++..|++.++..+..+..   ..+ ..++.|+++++. ..+..-.+..++|+.+....+..++.- -...+.++++|++
T Consensus       128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~  206 (350)
T 4ay9_X          128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL-PNDVFHGASGPVI  206 (350)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCC-CTTTTTTEECCSE
T ss_pred             chhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCC-CHHHhccCcccch
Confidence            6777888888776655432   222 468888888775 222222234556666632223322211 1123567899999


Q ss_pred             EecccCCCCcccccc-cccccEEEeecCcchhhhcc--CCCCeeEEEEe
Q 040471          273 LLLRFCRLPEKVKIS-SNQLKNLHFNSCENLKAIDT--DTPNLLSFTFS  318 (340)
Q Consensus       273 L~l~~c~~i~~~~~~-~~~L~~L~l~~c~~l~~~~~--~~p~L~~L~~~  318 (340)
                      |+++++. ++.++.. +.+|++|.+.++.+++.+..  ..++|+.+++.
T Consensus       207 LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          207 LDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT  254 (350)
T ss_dssp             EECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred             hhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence            9999764 6666554 68899999888887765542  34777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=2.7e-06  Score=74.91  Aligned_cols=95  Identities=12%  Similarity=0.042  Sum_probs=53.2

Q ss_pred             CcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccc----ccccc-EEEeecC-cch-hhhccCCCCee
Q 040471          241 VPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----SNQLK-NLHFNSC-ENL-KAIDTDTPNLL  313 (340)
Q Consensus       241 ~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~-~L~l~~c-~~l-~~~~~~~p~L~  313 (340)
                      +++|+.+ .+.+..++.-. ...+.+|++|+++++..+  ++.++..    |++|+ .+.+.+. ..+ ......|++|+
T Consensus       225 ~~~L~~l-~L~~n~i~~I~-~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSL-DISKTNATTIP-DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEE-ECTTBCCCEEC-TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEE
T ss_pred             cCCCeEE-ECCCCCcceec-HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCC
Confidence            5666666 44443222110 112456777787777754  4444433    57788 8888651 112 23345678999


Q ss_pred             EEEEeccCCCC-cceec-cccccccccc
Q 040471          314 SFTFSYDFNPI-PTIAM-NALSMETLFF  339 (340)
Q Consensus       314 ~L~~~~~~~~~-~~~~~-~~~~~~~l~~  339 (340)
                      .+.+.++.... +.-.| ..++++.+|+
T Consensus       301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEEeCCCccCccchhhhcCCcchhhhcc
Confidence            99987755443 22223 4557888775

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.15  E-value=4.6e-07  Score=83.37  Aligned_cols=43  Identities=28%  Similarity=0.332  Sum_probs=38.6

Q ss_pred             cccCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhcc
Q 040471            4 AKGMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCIS   46 (340)
Q Consensus         4 ~~~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~~   46 (340)
                      .-.+|.|+.||+|++.+||+||+.+|++++++|||+|+++...
T Consensus         9 ~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B            9 NLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            3357999999999999999999999999999999999986543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.15  E-value=2.7e-06  Score=70.81  Aligned_cols=105  Identities=14%  Similarity=0.052  Sum_probs=74.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .+++.|++..+..     ....|..+..+++|+.|+|+++.+..........+++|+.|+|+++.++.- ....+..+++
T Consensus        40 ~~L~~L~Ls~n~i-----~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~  113 (229)
T 3e6j_A           40 TNAQILYLHDNQI-----TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVH  113 (229)
T ss_dssp             TTCSEEECCSSCC-----CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred             CCCCEEEcCCCcc-----CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchh
Confidence            5788999876654     122355566789999999999987543223346789999999999887321 1223467899


Q ss_pred             CcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471          200 LEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       200 L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~  231 (340)
                      |+.|+++++.- ..+  .+..+++|+.|+++++.
T Consensus       114 L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A          114 LKELFMCCNKL-TELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             CCEEECCSSCC-CSCCTTGGGCTTCSEEECCSSC
T ss_pred             hCeEeccCCcc-cccCcccccCCCCCEEECCCCc
Confidence            99999998743 232  34567899999998775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.13  E-value=8.1e-07  Score=72.24  Aligned_cols=102  Identities=16%  Similarity=0.098  Sum_probs=76.6

Q ss_pred             HcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          119 DNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       119 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .+++++|++..+..      ..+| .+..+++|+.|++++|.+.. .......+++|+.|+++++.++.  +.. +..++
T Consensus        47 l~~L~~L~ls~n~l------~~l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~--l~~-~~~l~  115 (198)
T 1ds9_A           47 LKACKHLALSTNNI------EKIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS--LSG-IEKLV  115 (198)
T ss_dssp             TTTCSEEECSEEEE------SCCC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC--HHH-HHHHH
T ss_pred             CCCCCEEECCCCCC------cccc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc--CCc-cccCC
Confidence            47899999977654      3466 67778999999999998764 33344567999999999999843  222 56789


Q ss_pred             CCcEEEecccCCCc--c-cccccCCCCceEEecccc
Q 040471          199 SLEDFEISACWGLK--N-LCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       199 ~L~~L~l~~c~~~~--~-~~~~~~~~L~~L~i~~~~  231 (340)
                      +|+.|+++++.--.  . -.+..+++|+.|+++++.
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            99999999885322  1 134567899999999876

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.08  E-value=4.6e-06  Score=78.99  Aligned_cols=101  Identities=13%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ..++.|+++.+..      ..+|. +..+++|+.|+|++|.+.. .+.....+++|+.|+|+++.++.  +. -+..+++
T Consensus       441 ~~L~~L~Ls~n~l------~~lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~  509 (567)
T 1dce_A          441 ADVRVLHLAHKDL------TVLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN--VD-GVANLPR  509 (567)
T ss_dssp             TTCSEEECTTSCC------SSCCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSS
T ss_pred             cCceEEEecCCCC------CCCcC-ccccccCcEeecCcccccc-cchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCC
Confidence            4677887765544      34665 7778889999998887763 44456778888899888888742  22 3567888


Q ss_pred             CcEEEecccCCCc---ccccccCCCCceEEecccc
Q 040471          200 LEDFEISACWGLK---NLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       200 L~~L~l~~c~~~~---~~~~~~~~~L~~L~i~~~~  231 (340)
                      |+.|+++++.--.   .-.+..+++|+.|+++++.
T Consensus       510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            8888888874322   2245567888888888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.01  E-value=9.7e-06  Score=64.43  Aligned_cols=82  Identities=21%  Similarity=0.133  Sum_probs=43.6

Q ss_pred             CCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCc--ccccccCCCCceEE
Q 040471          149 KSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLK--NLCVSKAHKLKKLA  226 (340)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~--~~~~~~~~~L~~L~  226 (340)
                      ++|+.|+++++.+..........+++|++|++.++.++.- ....+..+++|+.|+++++.--.  .-.+..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            5677777777765432222235567777777777665210 01123456667777776653211  11123455666666


Q ss_pred             ecccc
Q 040471          227 IYTFY  231 (340)
Q Consensus       227 i~~~~  231 (340)
                      ++++.
T Consensus       107 l~~N~  111 (177)
T 2o6r_A          107 LDTNQ  111 (177)
T ss_dssp             CCSSC
T ss_pred             CcCCc
Confidence            66554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.01  E-value=7.2e-06  Score=66.32  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=48.8

Q ss_pred             CccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCC
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSL  200 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  200 (340)
                      ++++|++..+..      ..+|..+..+++|+.|+++++.+.......+..+++|++|+|+++.++.-. ...+..+++|
T Consensus        32 ~l~~L~L~~n~i------~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L  104 (193)
T 2wfh_A           32 DVTELYLDGNQF------TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSL  104 (193)
T ss_dssp             TCCEEECCSSCC------CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTC
T ss_pred             CCCEEECCCCcC------chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCC
Confidence            455555544333      244445555566666666665554322223445566666666665542110 0113345566


Q ss_pred             cEEEecccCCC--cccccccCCCCceEEecccc
Q 040471          201 EDFEISACWGL--KNLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       201 ~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~  231 (340)
                      +.|+++++.--  ..-.+..+++|+.|+++++.
T Consensus       105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            66666554321  11112334555555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.95  E-value=7.4e-06  Score=77.62  Aligned_cols=54  Identities=11%  Similarity=0.047  Sum_probs=29.2

Q ss_pred             ccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471          174 SLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       174 ~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~  231 (340)
                      .|+.|+++++.++.  +.. +..+++|+.|+++++.-- .+  .+..+++|+.|+++++.
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  497 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA  497 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence            46666666665521  122 455666666666665321 21  34455666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.94  E-value=2.3e-06  Score=83.62  Aligned_cols=114  Identities=11%  Similarity=0.067  Sum_probs=70.9

Q ss_pred             cCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--ccc
Q 040471          140 ILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--CVS  217 (340)
Q Consensus       140 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--~~~  217 (340)
                      ..+..+..+++|+.|+|+++.+.. .......+++|+.|+|+++.++  .+..-+..+++|+.|+|+++.-- .+  .+.
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~  290 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG  290 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence            345556668889999999887653 3344557889999999988774  22222467889999999887532 32  355


Q ss_pred             cCCCCceEEecccc-cccceeeecCcCcceEeccCceeeccH
Q 040471          218 KAHKLKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDE  258 (340)
Q Consensus       218 ~~~~L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~  258 (340)
                      .+++|+.|+++++. ..+......+++|+.| .+.++.+++.
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L-~L~~N~l~~~  331 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL-GVEGNPLEKQ  331 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCSSTTSCTTCCCE-ECTTSCCCSH
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCccEE-eCCCCccCCC
Confidence            67889999998876 1111111245566666 6666666543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.89  E-value=2.5e-06  Score=77.93  Aligned_cols=39  Identities=36%  Similarity=0.577  Sum_probs=36.3

Q ss_pred             ccCCccCCCchh----HHHHHhcCCchhhhhhhhcccccchhh
Q 040471            5 KGMDRITELPTF----IIHHIMSYLSAKEIARTSILSKRWCLF   43 (340)
Q Consensus         5 ~~~d~i~~LPd~----il~~Ifs~L~~~d~~~~s~vskrW~~l   43 (340)
                      -.+|.++.||+|    ++.+||+||+.+|++++++|||+|+++
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            357999999999    999999999999999999999999954

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.89  E-value=5.4e-06  Score=75.85  Aligned_cols=38  Identities=21%  Similarity=0.441  Sum_probs=35.9

Q ss_pred             cCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhh
Q 040471            6 GMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLF   43 (340)
Q Consensus         6 ~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l   43 (340)
                      .+|.++.||+|++.+||+||+.+|++++++|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            56999999999999999999999999999999999864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.88  E-value=1.1e-05  Score=64.86  Aligned_cols=62  Identities=13%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             CCCCccEEEeece-eCCCCCC----cccccCcccceEecceEeeChHHHHHH---HhcCCCCcEEEeccc
Q 040471          147 SAKSMATLSLFGC-RMEQPSD----TTTIRLDSLKKLTLENVYINDQMFQKL---TNECPSLEDFEISAC  208 (340)
Q Consensus       147 ~~~~L~~L~L~~~-~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l---~~~~p~L~~L~l~~c  208 (340)
                      .+++|++|+|++| .++....    ......++|++|+|+++.+++++...+   +...++|++|++++|
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            3455555555555 4432110    111234556666666666655444333   334556666666655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.87  E-value=2e-05  Score=63.61  Aligned_cols=89  Identities=16%  Similarity=0.087  Sum_probs=49.0

Q ss_pred             ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--ccccc
Q 040471          139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLCV  216 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~  216 (340)
                      ..+|..+.  ++|+.|+++++.+.. .......+++|+.|+|+++.++.-. ...+..+++|++|+++++.--  ..-.+
T Consensus        23 ~~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f   98 (193)
T 2wfh_A           23 KVLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTF   98 (193)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CcCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHh
Confidence            44554432  567777777776653 2234556777777777777662111 112345667777777765321  11123


Q ss_pred             ccCCCCceEEecccc
Q 040471          217 SKAHKLKKLAIYTFY  231 (340)
Q Consensus       217 ~~~~~L~~L~i~~~~  231 (340)
                      ..+++|+.|+++++.
T Consensus        99 ~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           99 DGLKSLRLLSLHGND  113 (193)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             CCCCCCCEEECCCCC
Confidence            445666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.85  E-value=2.1e-05  Score=63.46  Aligned_cols=90  Identities=18%  Similarity=0.132  Sum_probs=51.6

Q ss_pred             ccCCccccCCCCccEEEeeceeCCCCCCc-ccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcc--cc
Q 040471          139 CILPQTIFSAKSMATLSLFGCRMEQPSDT-TTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKN--LC  215 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~--~~  215 (340)
                      ..+|..+.  ++|+.|+++++.+...... ....+++|++|+|+++.++.-. ...+..+++|++|+++++.--..  -.
T Consensus        21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~   97 (192)
T 1w8a_A           21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM   97 (192)
T ss_dssp             SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred             CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHH
Confidence            45555443  2788888888766442211 2456778888888777663211 11234567777777777643211  12


Q ss_pred             cccCCCCceEEecccc
Q 040471          216 VSKAHKLKKLAIYTFY  231 (340)
Q Consensus       216 ~~~~~~L~~L~i~~~~  231 (340)
                      +..+++|+.|+++++.
T Consensus        98 ~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             STTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCc
Confidence            3445677777777654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.83  E-value=7.3e-05  Score=65.68  Aligned_cols=51  Identities=12%  Similarity=0.034  Sum_probs=30.5

Q ss_pred             HcCCCccc-EEecccCCCCcccccc----cccccEEEeecCc--ch-hhhccCCCCeeEEE
Q 040471          264 ISKFPLLE-DLLLRFCRLPEKVKIS----SNQLKNLHFNSCE--NL-KAIDTDTPNLLSFT  316 (340)
Q Consensus       264 ~~~~~~L~-~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~--~l-~~~~~~~p~L~~L~  316 (340)
                      +.+|++|+ .+.+..  .++.++..    |++|+++++.+..  .+ ......+++|+++.
T Consensus       269 F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          269 FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            45678888 888875  34444332    6778888775432  22 22334567777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.80  E-value=2.3e-05  Score=62.26  Aligned_cols=104  Identities=16%  Similarity=0.160  Sum_probs=73.3

Q ss_pred             cCccEEEEEeecCCCCCccccCCcc-ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQT-IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .++++|++..+..      ..++.. +..+++|++|+++++.+..........+++|+.|+++++.++.- ....+..++
T Consensus        28 ~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~  100 (177)
T 2o6r_A           28 SSATRLELESNKL------QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLT  100 (177)
T ss_dssp             TTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred             CCCcEEEeCCCcc------cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCc
Confidence            4788888866544      345544 45689999999999987653323346889999999999887321 122346789


Q ss_pred             CCcEEEecccCCCccc---ccccCCCCceEEecccc
Q 040471          199 SLEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~  231 (340)
                      +|++|+++++.- ..+   .+..+++|+.|+++++.
T Consensus       101 ~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          101 QLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence            999999998743 332   23457899999998775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.78  E-value=1.9e-05  Score=63.77  Aligned_cols=104  Identities=11%  Similarity=0.022  Sum_probs=74.4

Q ss_pred             CccEEEEEeecCCCCCccccCCc--cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQ--TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ++++|++..+..      ..++.  .+..+++|++|+|+++.+..........+++|++|+|+++.++.-. ...+..++
T Consensus        30 ~l~~L~l~~n~i------~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~  102 (192)
T 1w8a_A           30 HTTELLLNDNEL------GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLH  102 (192)
T ss_dssp             TCSEEECCSCCC------CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCT
T ss_pred             CCCEEECCCCcC------CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCC
Confidence            678888866544      34443  3667899999999999886643445678899999999999873211 11245689


Q ss_pred             CCcEEEecccCCCcc--cccccCCCCceEEecccc
Q 040471          199 SLEDFEISACWGLKN--LCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~--~~~~~~~~L~~L~i~~~~  231 (340)
                      +|++|+++++.--..  -.+..+++|+.|+++++.
T Consensus       103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            999999998853221  234567899999998876

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.68  E-value=1.3e-05  Score=78.30  Aligned_cols=102  Identities=17%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ..++.|++..+..      ..+|..++.+++|++|+|++|.+. ..+.....+++|+.|+|+++.++  .+..-+..+++
T Consensus       224 ~~L~~L~Ls~n~l------~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~  294 (727)
T 4b8c_D          224 QLWHALDLSNLQI------FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQ  294 (727)
T ss_dssp             CCCCEEECTTSCC------SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTT
T ss_pred             CCCcEEECCCCCC------CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCC
Confidence            5678888866554      478888889999999999999887 34455678999999999999885  22223567899


Q ss_pred             CcEEEecccCCCccc--ccccCCCCceEEecccc
Q 040471          200 LEDFEISACWGLKNL--CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       200 L~~L~l~~c~~~~~~--~~~~~~~L~~L~i~~~~  231 (340)
                      |++|+|++|.- ..+  .+..+++|+.|+++++.
T Consensus       295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCEEECCCCCC-CccChhhhcCCCccEEeCCCCc
Confidence            99999999843 333  36678999999999876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.60  E-value=8.6e-05  Score=59.47  Aligned_cols=60  Identities=15%  Similarity=0.237  Sum_probs=34.4

Q ss_pred             cCcccceEecceE-eeChHHHHHHH---hcCCCCcEEEecccCCCccc-------ccccCCCCceEEecccc
Q 040471          171 RLDSLKKLTLENV-YINDQMFQKLT---NECPSLEDFEISACWGLKNL-------CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       171 ~~~~L~~L~L~~~-~~~~~~l~~l~---~~~p~L~~L~l~~c~~~~~~-------~~~~~~~L~~L~i~~~~  231 (340)
                      ..++|++|+|+++ .+++++...+.   ..+++|++|++++|.- .+.       .+...++|++|+++++.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i-~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCC-CHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCC-ChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            4677777777777 66665554443   4466777777776642 211       11223556666665554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.56  E-value=9.1e-05  Score=58.41  Aligned_cols=90  Identities=13%  Similarity=0.120  Sum_probs=61.5

Q ss_pred             ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--ccccc
Q 040471          139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLCV  216 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~  216 (340)
                      ..+|..+.  ++|+.|+|+++.+..........+++|++|+|+++.++.- ....+..+++|+.|+++++.--  ..-.+
T Consensus        22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~   98 (170)
T 3g39_A           22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGAF   98 (170)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHHh
Confidence            45665553  7899999999887653334456789999999998887311 1223467889999999887432  11134


Q ss_pred             ccCCCCceEEecccc
Q 040471          217 SKAHKLKKLAIYTFY  231 (340)
Q Consensus       217 ~~~~~L~~L~i~~~~  231 (340)
                      ..+++|+.|+++++.
T Consensus        99 ~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           99 DNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEEeCCCC
Confidence            567888888888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.53  E-value=0.00013  Score=57.78  Aligned_cols=90  Identities=11%  Similarity=0.081  Sum_probs=61.4

Q ss_pred             ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCC--ccccc
Q 040471          139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGL--KNLCV  216 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~--~~~~~  216 (340)
                      ..+|..+.  ++|+.|+|+++.+..........+++|++|+|+++.++.- ...++..+++|+.|+++++.--  ..-.+
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~  101 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAF  101 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHh
Confidence            56666553  7899999999887653334556789999999998877321 1123456889999999886432  11124


Q ss_pred             ccCCCCceEEecccc
Q 040471          217 SKAHKLKKLAIYTFY  231 (340)
Q Consensus       217 ~~~~~L~~L~i~~~~  231 (340)
                      ..+++|+.|+++++.
T Consensus       102 ~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTCTTCSEEECCSSC
T ss_pred             ccccCCCEEEeCCCC
Confidence            567888888888765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.43  E-value=0.00046  Score=62.31  Aligned_cols=58  Identities=9%  Similarity=0.051  Sum_probs=35.5

Q ss_pred             HcCCCcccEEecccCCCCcccccc----cccccEEEeecCc-ch-hhhccCCCCeeEEEEeccCCCC
Q 040471          264 ISKFPLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCE-NL-KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       264 ~~~~~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~-~l-~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      +.+|++|+.+.+..  .++.++..    |.+|+.+.+...- .+ ......+ +|+++.+.++..+.
T Consensus       296 F~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          296 LEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             hhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            45677888887763  24444332    5788888885331 11 2233456 89999998865543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.33  E-value=0.00033  Score=63.30  Aligned_cols=12  Identities=8%  Similarity=0.014  Sum_probs=6.6

Q ss_pred             cCCCcccEEecc
Q 040471          265 SKFPLLEDLLLR  276 (340)
Q Consensus       265 ~~~~~L~~L~l~  276 (340)
                      .+|++|+.+.+.
T Consensus       320 ~~c~~L~~l~lp  331 (401)
T 4fdw_A          320 GGNRKVTQLTIP  331 (401)
T ss_dssp             TTCCSCCEEEEC
T ss_pred             cCCCCccEEEEC
Confidence            345556655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.05  E-value=0.00032  Score=55.45  Aligned_cols=84  Identities=13%  Similarity=0.065  Sum_probs=59.8

Q ss_pred             cCccEEEEEeecCCCCCccccC-CccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCIL-PQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .+++.|++..+..      ..+ |..+..+++|+.|+|+++.+.......+..+++|++|+|+++.++.- ....+..++
T Consensus        33 ~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~  105 (174)
T 2r9u_A           33 TDKQRLWLNNNQI------TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLK  105 (174)
T ss_dssp             TTCSEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred             CCCcEEEeCCCCc------cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhcccc
Confidence            5788888866554      344 44566789999999999987653222346789999999999887311 112356789


Q ss_pred             CCcEEEecccCC
Q 040471          199 SLEDFEISACWG  210 (340)
Q Consensus       199 ~L~~L~l~~c~~  210 (340)
                      +|+.|+++++..
T Consensus       106 ~L~~L~L~~N~~  117 (174)
T 2r9u_A          106 SLTHIYLYNNPW  117 (174)
T ss_dssp             TCSEEECCSSCB
T ss_pred             CCCEEEeCCCCc
Confidence            999999998743

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.92  E-value=0.00077  Score=52.97  Aligned_cols=83  Identities=14%  Similarity=0.093  Sum_probs=58.0

Q ss_pred             cCccEEEEEeecCCCCCccccC-CccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCIL-PQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      .+++.|++..+..      ..+ |..+..+++|+.|+|+++.+..........+++|++|+|+++.++.- ....+..++
T Consensus        30 ~~l~~L~L~~N~i------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~  102 (170)
T 3g39_A           30 TTTQVLYLYDNQI------TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLK  102 (170)
T ss_dssp             TTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred             CCCcEEEcCCCcC------CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCC
Confidence            4678888866544      344 44566789999999999887653223346789999999999887321 112356789


Q ss_pred             CCcEEEecccC
Q 040471          199 SLEDFEISACW  209 (340)
Q Consensus       199 ~L~~L~l~~c~  209 (340)
                      +|+.|+++++.
T Consensus       103 ~L~~L~L~~N~  113 (170)
T 3g39_A          103 SLTHIWLLNNP  113 (170)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEeCCCC
Confidence            99999998864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.80  E-value=0.0012  Score=55.92  Aligned_cols=16  Identities=25%  Similarity=0.231  Sum_probs=11.5

Q ss_pred             HHHHcCCCcccEEecc
Q 040471          261 DRFISKFPLLEDLLLR  276 (340)
Q Consensus       261 ~~l~~~~~~L~~L~l~  276 (340)
                      ..++..+|+|+.|+=.
T Consensus       244 ~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          244 SAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHCTTCCEESSC
T ss_pred             HHHHHHCcccCeECCc
Confidence            4567788988888643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.62  E-value=0.0016  Score=57.41  Aligned_cols=90  Identities=16%  Similarity=0.090  Sum_probs=58.8

Q ss_pred             cccCCccccCCCCccEEEeec-eeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--
Q 040471          138 VCILPQTIFSAKSMATLSLFG-CRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--  214 (340)
Q Consensus       138 ~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--  214 (340)
                      ...+|. +..+++|+.|+|++ +.+.......+..+++|+.|+|+++.++.- ....+..+++|+.|+|+++.- ..+  
T Consensus        21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~   97 (347)
T 2ifg_A           21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNAL-ESLSW   97 (347)
T ss_dssp             CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred             CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCcc-ceeCH
Confidence            356777 77788899999986 766543223456788899999988876321 122346788899999888632 222  


Q ss_pred             -ccccCCCCceEEecccc
Q 040471          215 -CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       215 -~~~~~~~L~~L~i~~~~  231 (340)
                       .+.. ..|+.|.+.++.
T Consensus        98 ~~~~~-~~L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQG-LSLQELVLSGNP  114 (347)
T ss_dssp             TTTCS-CCCCEEECCSSC
T ss_pred             HHccc-CCceEEEeeCCC
Confidence             1222 238888887654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.33  E-value=0.0014  Score=55.42  Aligned_cols=59  Identities=17%  Similarity=0.254  Sum_probs=25.6

Q ss_pred             CCCccEEEeeceeCCC--CCCcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEeccc
Q 040471          148 AKSMATLSLFGCRMEQ--PSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISAC  208 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c  208 (340)
                      +++|+.|+|+++.+..  ........+++|+.|+|+++.+ +...+..+ ... +|++|.+.++
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~N  230 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGN  230 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTS
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCC
Confidence            4455555555555433  1111122455555555555555 22223222 112 5555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.04  E-value=0.0081  Score=52.75  Aligned_cols=80  Identities=11%  Similarity=0.119  Sum_probs=41.8

Q ss_pred             CccEEEEEe-ecCCCCCccccCC-ccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          121 GIKDLVLMV-HNMTQEDTVCILP-QTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       121 ~l~~L~l~~-~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      ++++|+|.. +..      ..++ ..+..+++|+.|+|+++.+.......+..+++|+.|+|+++.++.- ...++...+
T Consensus        32 ~L~~L~l~~~n~l------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~  104 (347)
T 2ifg_A           32 NLTELYIENQQHL------QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS  104 (347)
T ss_dssp             CCSEEECCSCSSC------CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC
T ss_pred             CeeEEEccCCCCC------CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC
Confidence            566666653 322      3333 3344567777777777665442222345667777777777665210 011122222


Q ss_pred             CCcEEEeccc
Q 040471          199 SLEDFEISAC  208 (340)
Q Consensus       199 ~L~~L~l~~c  208 (340)
                       |+.|++.++
T Consensus       105 -L~~l~l~~N  113 (347)
T 2ifg_A          105 -LQELVLSGN  113 (347)
T ss_dssp             -CCEEECCSS
T ss_pred             -ceEEEeeCC
Confidence             777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.89  E-value=0.062  Score=42.96  Aligned_cols=50  Identities=10%  Similarity=0.021  Sum_probs=25.6

Q ss_pred             ccCceeeccHHHHHH---HcCCCcccEEecccCC--CCccccc--------ccccccEEEeec
Q 040471          249 MLTSVWFMDEEFDRF---ISKFPLLEDLLLRFCR--LPEKVKI--------SSNQLKNLHFNS  298 (340)
Q Consensus       249 ~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~c~--~i~~~~~--------~~~~L~~L~l~~  298 (340)
                      .+.++.|++++...+   +..-..|++|+++++.  .+++.+-        .-++|++|++..
T Consensus       104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A          104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            344444666654443   3444567788777542  2333211        135666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.37  E-value=0.015  Score=46.52  Aligned_cols=100  Identities=13%  Similarity=0.221  Sum_probs=63.3

Q ss_pred             hHHHHHHHHHH--cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCccc----ccCcccceEecce
Q 040471          109 LLDKWIGLAVD--NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTT----IRLDSLKKLTLEN  182 (340)
Q Consensus       109 ~l~~~l~~~~~--~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~----~~~~~L~~L~L~~  182 (340)
                      .++..+..+..  ..+++|++..+..-.+.+...+...+..-.+|+.|+|++|.+++......    ..-..|++|+|.+
T Consensus        28 ~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           28 DVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             CHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             CHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC
Confidence            46666666554  46788887543121122334455556666789999998888755221111    1347789999999


Q ss_pred             EeeChHHHHHHHhc---CCCCcEEEeccc
Q 040471          183 VYINDQMFQKLTNE---CPSLEDFEISAC  208 (340)
Q Consensus       183 ~~~~~~~l~~l~~~---~p~L~~L~l~~c  208 (340)
                      +.+++.+...++..   -..|++|+|+++
T Consensus       108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          108 NFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            88888777776643   456888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.24  E-value=0.22  Score=44.40  Aligned_cols=78  Identities=9%  Similarity=0.170  Sum_probs=41.0

Q ss_pred             cccCCCCccEEEeecee--CCCCCCcccccCcccceEecceEee--ChHHHHHHHhcCCCCcEEEecccCCCcccccccC
Q 040471          144 TIFSAKSMATLSLFGCR--MEQPSDTTTIRLDSLKKLTLENVYI--NDQMFQKLTNECPSLEDFEISACWGLKNLCVSKA  219 (340)
Q Consensus       144 ~~~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~  219 (340)
                      ..+.+.+|+.+.+....  ++.   .....+.+|+.+.+.....  ..    ..+..|+.++.+...... +.......|
T Consensus       225 ~~~~~~~l~~i~ip~~~~~i~~---~~f~~~~~l~~~~~~~~~~~i~~----~~F~~~~~l~~~~~~~~~-i~~~~F~~~  296 (394)
T 4fs7_A          225 FALSKTGVKNIIIPDSFTELGK---SVFYGCTDLESISIQNNKLRIGG----SLFYNCSGLKKVIYGSVI-VPEKTFYGC  296 (394)
T ss_dssp             TTTTTCCCCEEEECTTCCEECS---STTTTCSSCCEEEECCTTCEECS----CTTTTCTTCCEEEECSSE-ECTTTTTTC
T ss_pred             hhcccCCCceEEECCCceeccc---ccccccccceeEEcCCCcceeec----cccccccccceeccCcee-ecccccccc
Confidence            34456778888776531  222   2344677777777654321  11    113456777766654321 222233456


Q ss_pred             CCCceEEecc
Q 040471          220 HKLKKLAIYT  229 (340)
Q Consensus       220 ~~L~~L~i~~  229 (340)
                      .+|+.+.+..
T Consensus       297 ~~L~~i~l~~  306 (394)
T 4fs7_A          297 SSLTEVKLLD  306 (394)
T ss_dssp             TTCCEEEECT
T ss_pred             cccccccccc
Confidence            6777776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.90  E-value=0.065  Score=47.90  Aligned_cols=121  Identities=16%  Similarity=0.196  Sum_probs=62.4

Q ss_pred             ccccCcccceEecceEee--ChHHHHHHHhcCCCCcEEEeccc-CCCcccccccCCCCceEEecccccccceeeecCcCc
Q 040471          168 TTIRLDSLKKLTLENVYI--NDQMFQKLTNECPSLEDFEISAC-WGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSL  244 (340)
Q Consensus       168 ~~~~~~~L~~L~L~~~~~--~~~~l~~l~~~~p~L~~L~l~~c-~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L  244 (340)
                      .+..|.+|+.+.+.....  ..    ..+..|+.|+.+.+... ..+..-...+|.+|+.+.+...-             
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v-------------  322 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGI-------------  322 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTC-------------
T ss_pred             eeeecccccEEecccccceecC----cccccccccccccCCCcccccCceeecCCCCcCEEEeCCcc-------------
Confidence            345678888888754322  22    12456888888888632 22333355667888888875321             


Q ss_pred             ceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----ccccccEEEeecCcchhhhccCCCCeeEEEEec
Q 040471          245 QQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSY  319 (340)
Q Consensus       245 ~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~  319 (340)
                      +.        |.+.    .+.+|.+|+++.+...  ++.++.    .|.+|+++++.+......-...+.+|+++.+..
T Consensus       323 ~~--------I~~~----aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          323 TQ--------ILDD----AFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAP  387 (394)
T ss_dssp             CE--------ECTT----TTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-------
T ss_pred             cE--------ehHh----HhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeCC
Confidence            11        1111    2456777777777532  333332    257777777765433222223456666666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.83  E-value=0.11  Score=46.33  Aligned_cols=100  Identities=12%  Similarity=0.111  Sum_probs=59.7

Q ss_pred             ccccCCCCceEEecccccccce-eeecCcCcceEeccCce-eeccHHHHHHHcCCCcccEEecccCCCCcccccc----c
Q 040471          215 CVSKAHKLKKLAIYTFYKDIGI-VEIVVPSLQQQLMLTSV-WFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS----S  288 (340)
Q Consensus       215 ~~~~~~~L~~L~i~~~~~~~~~-~~~~~p~L~~ll~l~~~-~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~----~  288 (340)
                      ....|..|+.+.+......... ...+++.|+.+..-... .|.+.+    +.+|.+|+++.+...  ++.++..    |
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF~~C  333 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEG--ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTTTTC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCCCcccccCcee----ecCCCCcCEEEeCCc--ccEehHhHhhCC
Confidence            3445777777777543311111 12246666666211222 133333    568999999999743  4444433    7


Q ss_pred             ccccEEEeec-Ccch-hhhccCCCCeeEEEEecc
Q 040471          289 NQLKNLHFNS-CENL-KAIDTDTPNLLSFTFSYD  320 (340)
Q Consensus       289 ~~L~~L~l~~-c~~l-~~~~~~~p~L~~L~~~~~  320 (340)
                      .+|+++.+.. ...+ ......|++|+++.+.+.
T Consensus       334 ~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          334 EQLERIAIPSSVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCCEEEECcccCEEhHhHhhCCCCCCEEEECCc
Confidence            8999999953 2333 344467899999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=93.52  E-value=0.2  Score=44.69  Aligned_cols=169  Identities=14%  Similarity=0.104  Sum_probs=83.3

Q ss_pred             cCCcc-ccCCCCccEEEeecee--CCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccC-CCcccc
Q 040471          140 ILPQT-IFSAKSMATLSLFGCR--MEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACW-GLKNLC  215 (340)
Q Consensus       140 ~l~~~-~~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~-~~~~~~  215 (340)
                      .++.. +..|.+|+.+.+....  +..   .....|..|+.+.+......   +......+..|+.+.+.... .+..-.
T Consensus       175 ~I~~~~F~~c~~L~~i~l~~~~~~I~~---~~F~~~~~L~~i~~~~~~~~---i~~~~~~~~~l~~i~ip~~~~~i~~~~  248 (394)
T 4fs7_A          175 TLHNGLFSGCGKLKSIKLPRNLKIIRD---YCFAECILLENMEFPNSLYY---LGDFALSKTGVKNIIIPDSFTELGKSV  248 (394)
T ss_dssp             EECTTTTTTCTTCCBCCCCTTCCEECT---TTTTTCTTCCBCCCCTTCCE---ECTTTTTTCCCCEEEECTTCCEECSST
T ss_pred             eeccccccCCCCceEEEcCCCceEeCc---hhhccccccceeecCCCceE---eehhhcccCCCceEEECCCceeccccc
Confidence            34433 3448888888886531  222   23445667776666543220   01112334566666554321 111112


Q ss_pred             cccCCCCceEEeccccc----------------------ccceeeecCcCcceEeccCcee-eccHHHHHHHcCCCcccE
Q 040471          216 VSKAHKLKKLAIYTFYK----------------------DIGIVEIVVPSLQQQLMLTSVW-FMDEEFDRFISKFPLLED  272 (340)
Q Consensus       216 ~~~~~~L~~L~i~~~~~----------------------~~~~~~~~~p~L~~ll~l~~~~-i~~~~~~~l~~~~~~L~~  272 (340)
                      ...|..|+.+.+.....                      ........+++|+.+....+.. |.+.+    +.+|.+|++
T Consensus       249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~  324 (394)
T 4fs7_A          249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKFIGEEA----FESCTSLVS  324 (394)
T ss_dssp             TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCEECTTT----TTTCTTCCE
T ss_pred             ccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccceechhh----hcCCCCCCE
Confidence            22344444444432210                      0001112455566652222322 33333    456888888


Q ss_pred             EecccCCCCcccccc----cccccEEEeecC-cch-hhhccCCCCeeEEEEecc
Q 040471          273 LLLRFCRLPEKVKIS----SNQLKNLHFNSC-ENL-KAIDTDTPNLLSFTFSYD  320 (340)
Q Consensus       273 L~l~~c~~i~~~~~~----~~~L~~L~l~~c-~~l-~~~~~~~p~L~~L~~~~~  320 (340)
                      +++..  .++.++..    |.+|+++.+... ..+ ......|++|+++.+...
T Consensus       325 i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          325 IDLPY--LVEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECCCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG
T ss_pred             EEeCC--cccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC
Confidence            88863  24444432    678888888543 222 233456789999988763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.64  E-value=2.5  Score=37.04  Aligned_cols=33  Identities=12%  Similarity=0.122  Sum_probs=17.7

Q ss_pred             HcCCCcccEEecccCCCCccccc----ccccccEEEee
Q 040471          264 ISKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFN  297 (340)
Q Consensus       264 ~~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~  297 (340)
                      +.+|++|+.+.+..+ .++.++.    .|.+|+++.+.
T Consensus       282 F~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          282 CSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccccc-ccceehhhhhcCCCCCCEEEcC
Confidence            345677777766532 2333322    25666666663

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	8e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.001

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 7  MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCIS 46
           D I+ LP  +  +++S+L  K++ + +   + W +    
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED 55

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 7  MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCISFPIL 50
           D IT LP  I   I +YL  ++I  +  +S+ W         L
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 8e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 7  MDRITELPTF----IIHHIMSYLSAKEIARTSILSKRWCLFC 44
           D IT LP      I  +I+SYL AK +    ++ K W    
Sbjct: 8  RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVT 49

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 12 ELPTFIIHHIMSYLSAKEIARTSILSKRWCLFC 44
           LP  ++  I S L   E+ + S + KRW    
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.73
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.4
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.22
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.05
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.05
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.01
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.01
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.98
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.76
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.74
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.71
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.69
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.66
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.64
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.57
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.54
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.92
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.61
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.37
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.0
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.85
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.42
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.66

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.6e-19  Score=151.09  Aligned_cols=188  Identities=20%  Similarity=0.287  Sum_probs=119.3

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p  198 (340)
                      .++++|+++.+..    ....+...+..|++|++|++++|.++.........+++|++|++++|.. ++.++..++..||
T Consensus        46 ~~L~~LdLs~~~i----~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~  121 (284)
T d2astb2          46 FRVQHMDLSNSVI----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  121 (284)
T ss_dssp             BCCCEEECTTCEE----CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCCEEECCCCcc----CHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence            3677777755443    3344555566688888888888876543334445678888888888755 7788888888888


Q ss_pred             CCcEEEecccCCCccccc-----ccCCCCceEEeccccc-----ccceeeecCcCcceEeccCcee-eccHHHHHHHcCC
Q 040471          199 SLEDFEISACWGLKNLCV-----SKAHKLKKLAIYTFYK-----DIGIVEIVVPSLQQQLMLTSVW-FMDEEFDRFISKF  267 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~~-----~~~~~L~~L~i~~~~~-----~~~~~~~~~p~L~~ll~l~~~~-i~~~~~~~l~~~~  267 (340)
                      +|++|++++|..+.+..+     ..+++|+.|++++|..     ++..+...+|+|+.+ ++.++. ++++.+.. +..+
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L-~L~~~~~itd~~~~~-l~~~  199 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL-DLSDSVMLKNDCFQE-FFQL  199 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE-ECTTCTTCCGGGGGG-GGGC
T ss_pred             hccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccccc-ccccccCCCchhhhh-hccc
Confidence            888888888877654322     1257788888887641     122223356777776 665543 66655554 3456


Q ss_pred             CcccEEecccCCCCcccccc----cccccEEEeecCcc---hhhhccCCCCee
Q 040471          268 PLLEDLLLRFCRLPEKVKIS----SNQLKNLHFNSCEN---LKAIDTDTPNLL  313 (340)
Q Consensus       268 ~~L~~L~l~~c~~i~~~~~~----~~~L~~L~l~~c~~---l~~~~~~~p~L~  313 (340)
                      ++|++|++++|..+++.+..    +|+|++|++.+|..   +..+...+|+|+
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            77777777777766654432    56777777777632   233334456654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.9e-13  Score=113.91  Aligned_cols=151  Identities=18%  Similarity=0.231  Sum_probs=106.4

Q ss_pred             CCCCccEEEeeceeCCCCC-CcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccccc----ccCCC
Q 040471          147 SAKSMATLSLFGCRMEQPS-DTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCV----SKAHK  221 (340)
Q Consensus       147 ~~~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~----~~~~~  221 (340)
                      ...+|++|++++|.+.... ......|++|++|++.+|.+++..+..+ ..+|+|++|++++|..+++.++    .+|++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHHh
Confidence            3457888888887764422 2234567888888888887777777665 4578888888888877765332    35677


Q ss_pred             CceEEecccccccceeeecCcCcceEeccCceeeccHHHHH-HHcCCCcccEEecccCC-CCccccc-----ccccccEE
Q 040471          222 LKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDR-FISKFPLLEDLLLRFCR-LPEKVKI-----SSNQLKNL  294 (340)
Q Consensus       222 L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~-l~~~~~~L~~L~l~~c~-~i~~~~~-----~~~~L~~L  294 (340)
                      |++|++++|.                      .++++.+.. +...+++|++|++++|. .+++.++     .||+|++|
T Consensus       123 L~~L~ls~c~----------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L  180 (284)
T d2astb2         123 LDELNLSWCF----------------------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  180 (284)
T ss_dssp             CCEEECCCCT----------------------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             cccccccccc----------------------ccccccchhhhcccccccchhhhccccccccccccccccccccccccc
Confidence            8888877765                      456666554 34567899999999874 3554433     47999999


Q ss_pred             EeecCcchh----hhccCCCCeeEEEEecc
Q 040471          295 HFNSCENLK----AIDTDTPNLLSFTFSYD  320 (340)
Q Consensus       295 ~l~~c~~l~----~~~~~~p~L~~L~~~~~  320 (340)
                      ++++|..+.    .....+|+|++|++.+.
T Consensus       181 ~L~~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             ccccccCCCchhhhhhcccCcCCEEECCCC
Confidence            999998762    11235799999999883

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3e-13  Score=78.42  Aligned_cols=36  Identities=28%  Similarity=0.423  Sum_probs=33.9

Q ss_pred             cCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471           10 ITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus        10 i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      |+.||+||+.+||+||+.+|++++++|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=6.5e-11  Score=97.03  Aligned_cols=182  Identities=13%  Similarity=0.107  Sum_probs=128.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|++..+..      ..++ .+..+++|+.|+++++.+...  .....+++|+.+.+.++.++.  +.. +..+++
T Consensus        41 ~~L~~L~l~~~~i------~~l~-~l~~l~~L~~L~ls~n~i~~~--~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~  108 (227)
T d1h6ua2          41 DGITTLSAFGTGV------TTIE-GVQYLNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKN--VSA-IAGLQS  108 (227)
T ss_dssp             HTCCEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCCC--GGGTTCCSCCEEECCSCCCSC--CGG-GTTCTT
T ss_pred             CCcCEEECCCCCC------Ccch-hHhcCCCCcEeecCCceeecc--ccccccccccccccccccccc--ccc-cccccc
Confidence            5889998876654      3453 467799999999999887642  236788999999999887732  122 457899


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCC
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCR  279 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~  279 (340)
                      |+.+.+++|.......+...+.++.+.++++.-........+++|+.+ .+.++.+.+..-   +.++++|++|++++|.
T Consensus       109 L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L-~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL-SIGNAQVSDLTP---LANLSKLTTLKADDNK  184 (227)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEE-ECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccc-cccccccccchh---hcccccceecccCCCc
Confidence            999999988765444455568888888887762111122357778887 666666554221   5678999999999874


Q ss_pred             CCccccc--ccccccEEEeecCcchhhhc--cCCCCeeEEEEec
Q 040471          280 LPEKVKI--SSNQLKNLHFNSCENLKAID--TDTPNLLSFTFSY  319 (340)
Q Consensus       280 ~i~~~~~--~~~~L~~L~l~~c~~l~~~~--~~~p~L~~L~~~~  319 (340)
                       +++++.  .+++|++|++++| ++..+.  ...++|+.|+++.
T Consensus       185 -l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 -ISDISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CCCCGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             -cCCChhhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence             555532  3689999999988 454443  4568999998864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=6.1e-10  Score=89.96  Aligned_cols=100  Identities=14%  Similarity=0.110  Sum_probs=62.9

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      ..+++|++..+..      ..++ .+..+++|++|+++++.+..  .+....+++|+.|++.++.+++  +.. ...+++
T Consensus        46 ~~L~~L~l~~~~i------~~l~-~l~~l~~L~~L~L~~n~i~~--l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~  113 (210)
T d1h6ta2          46 NSIDQIIANNSDI------KSVQ-GIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKD--LSS-LKDLKK  113 (210)
T ss_dssp             HTCCEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCC--CGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTT
T ss_pred             cCccEEECcCCCC------CCch-hHhhCCCCCEEeCCCccccC--ccccccCccccccccccccccc--ccc-cccccc
Confidence            3677777654443      2233 35567888888888877654  1234567888888888877632  121 456788


Q ss_pred             CcEEEecccCCCcccccccCCCCceEEecccc
Q 040471          200 LEDFEISACWGLKNLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       200 L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~  231 (340)
                      |+.|++.+|.....-.+..+++++.+.++++.
T Consensus       114 L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2         114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            88888887754332234456777777776654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=5.3e-10  Score=89.51  Aligned_cols=99  Identities=9%  Similarity=0.037  Sum_probs=69.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p  198 (340)
                      .++++|++..+..      ..+. .+..+++|++|++++|.+...  +....+++|++|++.++.+ ....    +..++
T Consensus        40 ~~l~~L~l~~~~i------~~l~-~l~~l~nL~~L~Ls~N~l~~~--~~l~~l~~L~~L~l~~n~~~~~~~----l~~l~  106 (199)
T d2omxa2          40 DQVTTLQADRLGI------KSID-GVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITP----LANLT  106 (199)
T ss_dssp             TTCCEEECTTSCC------CCCT-TGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG----GTTCT
T ss_pred             cCCCEEECCCCCC------CCcc-ccccCCCcCcCccccccccCc--ccccCCcccccccccccccccccc----ccccc
Confidence            5778887755544      2332 355688899999988877542  2356788889988888876 3222    45788


Q ss_pred             CCcEEEecccCCCcccccccCCCCceEEecccc
Q 040471          199 SLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       199 ~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~  231 (340)
                      .|+.|++++|.......+..+++|+.|.++++.
T Consensus       107 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~  139 (199)
T d2omxa2         107 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT  139 (199)
T ss_dssp             TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             ccccccccccccccccccchhhhhHHhhhhhhh
Confidence            888888888766544445667888888888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=7.6e-10  Score=88.59  Aligned_cols=80  Identities=13%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEE
Q 040471          147 SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLA  226 (340)
Q Consensus       147 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~  226 (340)
                      .++++++|+++++.+..  ......+++|++|+++++.+++-.  . +..+++|++|.+++|.....-.+.++++|+.|.
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCC--ccccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccccccccccccccccc
Confidence            35789999999987754  234567999999999999883311  1 567999999999988654333466789999999


Q ss_pred             ecccc
Q 040471          227 IYTFY  231 (340)
Q Consensus       227 i~~~~  231 (340)
                      ++++.
T Consensus       113 l~~~~  117 (199)
T d2omxa2         113 LFNNQ  117 (199)
T ss_dssp             CCSSC
T ss_pred             ccccc
Confidence            98776

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=1.6e-09  Score=87.44  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=111.9

Q ss_pred             CCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc-ccccCCCCceEE
Q 040471          148 AKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL-CVSKAHKLKKLA  226 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-~~~~~~~L~~L~  226 (340)
                      ..+|++|.++++.+...  .....+++|++|+++++.+++  +.. ...+++|+.|++++|. +..+ .+..+++|+.|.
T Consensus        45 L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccc-ccccccccccccccccc
Confidence            56899999999987652  345679999999999998843  112 3678999999999874 4443 456689999999


Q ss_pred             ecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc-c-ccccccEEEeecCcchhh
Q 040471          227 IYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK-I-SSNQLKNLHFNSCENLKA  304 (340)
Q Consensus       227 i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~-~-~~~~L~~L~l~~c~~l~~  304 (340)
                      +.++....-......++++.+ .+.+..+++..   ....+++|++++++++. ++++. . .+++|++|++++|. ++.
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l-~~~~n~l~~~~---~~~~l~~L~~l~l~~n~-l~~i~~l~~l~~L~~L~Ls~N~-i~~  192 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESL-YLGNNKITDIT---VLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNH-ISD  192 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEE-ECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCB
T ss_pred             ccccccccccccccccccccc-ccccccccccc---ccccccccccccccccc-ccccccccCCCCCCEEECCCCC-CCC
Confidence            998862111112356677776 55665555432   24568999999999775 44442 2 36889999998873 433


Q ss_pred             hc--cCCCCeeEEEEec
Q 040471          305 ID--TDTPNLLSFTFSY  319 (340)
Q Consensus       305 ~~--~~~p~L~~L~~~~  319 (340)
                      +.  ...++|+.|++++
T Consensus       193 l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CGGGTTCTTCSEEEEEE
T ss_pred             ChhhcCCCCCCEEEccC
Confidence            33  3458899998876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=1.3e-09  Score=89.09  Aligned_cols=167  Identities=16%  Similarity=0.152  Sum_probs=116.1

Q ss_pred             cCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeCh-HHHHHHHhcCCCCcEEEecccCCCcccccccCCCCce
Q 040471          146 FSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIND-QMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKK  224 (340)
Q Consensus       146 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~  224 (340)
                      ..+.+|+.|.+.+|.+.. . .....+++|++|+++++.+++ ..    +..+++|+.+.+.+|..-..-.+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~----l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKNVSAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSCCGGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc----ccccccccccccccccccccccccccccccc
Confidence            346889999999998765 2 456789999999999998832 22    5789999999999885432224667899999


Q ss_pred             EEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc-ccccccEEEeecCcchh
Q 040471          225 LAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI-SSNQLKNLHFNSCENLK  303 (340)
Q Consensus       225 L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~-~~~~L~~L~l~~c~~l~  303 (340)
                      +.++++...........+.+..+ .+.+..+....   -+.++++|++|.+++|......++ .+++|++|++++|. +.
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~-l~  186 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVL-YLDLNQITNIS---PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-IS  186 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEE-ECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CC
T ss_pred             cccccccccccchhccccchhhh-hchhhhhchhh---hhccccccccccccccccccchhhcccccceecccCCCc-cC
Confidence            99988762111112234555555 44444443321   146789999999998764333333 47999999999884 43


Q ss_pred             hhc--cCCCCeeEEEEeccCCC
Q 040471          304 AID--TDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       304 ~~~--~~~p~L~~L~~~~~~~~  323 (340)
                      .+.  ...|+|++|+++++...
T Consensus       187 ~l~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         187 DISPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CCGGGGGCTTCCEEECTTSCCC
T ss_pred             CChhhcCCCCCCEEECcCCcCC
Confidence            332  45699999999997654

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=3e-11  Score=85.44  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=36.8

Q ss_pred             CCccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471            7 MDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus         7 ~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      +|.++.||+||+.+||+||+.+|++++++|||+|+++..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999999998654

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.2e-10  Score=82.69  Aligned_cols=40  Identities=20%  Similarity=0.401  Sum_probs=37.4

Q ss_pred             cCCccCCCchhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471            6 GMDRITELPTFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus         6 ~~d~i~~LPd~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      .+|+|+.||+||+.+||+||+.+|+++++.|||+|+.+..
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~   54 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE   54 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC
Confidence            4799999999999999999999999999999999998644

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=1.6e-09  Score=92.51  Aligned_cols=190  Identities=12%  Similarity=0.092  Sum_probs=97.6

Q ss_pred             cCccEEEEEeecCCCCCccccC-CccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeCh-H---------
Q 040471          120 NGIKDLVLMVHNMTQEDTVCIL-PQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYIND-Q---------  188 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~---------  188 (340)
                      .++++|++..+..      ..+ |..+..+++|+.|+++++.+..-   ....++.++.|.+.++.+.. .         
T Consensus        55 ~~L~~L~l~~n~~------~~i~~~~f~~l~~L~~L~l~~n~l~~l---~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~  125 (305)
T d1xkua_          55 KNLHTLILINNKI------SKISPGAFAPLVKLERLYLSKNQLKEL---PEKMPKTLQELRVHENEITKVRKSVFNGLNQ  125 (305)
T ss_dssp             TTCCEEECCSSCC------CCBCTTTTTTCTTCCEEECCSSCCSBC---CSSCCTTCCEEECCSSCCCBBCHHHHTTCTT
T ss_pred             ccccccccccccc------cccchhhhhCCCccCEecccCCccCcC---ccchhhhhhhhhccccchhhhhhhhhhcccc
Confidence            4677777655543      233 33445567777777777654321   11123445555544433311 0         


Q ss_pred             ---------------HHHHHHhcCCCCcEEEecccCCCcccccccCCCCceEEecccc-ccc-ceeeecCcCcceEeccC
Q 040471          189 ---------------MFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDI-GIVEIVVPSLQQQLMLT  251 (340)
Q Consensus       189 ---------------~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~-~~~~~~~p~L~~ll~l~  251 (340)
                                     ........+++|+.+.+.+|.. ..+....+++|+.|++.++. ... ......++.++.+ .+.
T Consensus       126 ~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L-~~s  203 (305)
T d1xkua_         126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL-GLS  203 (305)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEE-ECC
T ss_pred             ccccccccccccccCCCccccccccccCccccccCCc-cccCcccCCccCEEECCCCcCCCCChhHhhcccccccc-ccc
Confidence                           0011123344455555544421 11212224566666666554 111 1111234555555 555


Q ss_pred             ceeeccHHHHHHHcCCCcccEEecccCCCCccccc---ccccccEEEeecCcchhhh----------ccCCCCeeEEEEe
Q 040471          252 SVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI---SSNQLKNLHFNSCENLKAI----------DTDTPNLLSFTFS  318 (340)
Q Consensus       252 ~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~---~~~~L~~L~l~~c~~l~~~----------~~~~p~L~~L~~~  318 (340)
                      ++.+++... ..+.++++|++|++++|. ++.++.   .+++|++|+++++. ++.+          ....++|+.|+++
T Consensus       204 ~n~l~~~~~-~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~  280 (305)
T d1xkua_         204 FNSISAVDN-GSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLF  280 (305)
T ss_dssp             SSCCCEECT-TTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             ccccccccc-ccccccccceeeeccccc-ccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECC
Confidence            555443222 235678889999998874 554432   25889999998864 3322          2234778889998


Q ss_pred             ccCCC
Q 040471          319 YDFNP  323 (340)
Q Consensus       319 ~~~~~  323 (340)
                      |++..
T Consensus       281 ~N~~~  285 (305)
T d1xkua_         281 SNPVQ  285 (305)
T ss_dssp             SSSSC
T ss_pred             CCcCc
Confidence            86654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.92  E-value=1.3e-09  Score=93.55  Aligned_cols=60  Identities=15%  Similarity=0.000  Sum_probs=37.9

Q ss_pred             HcCCCcccEEecccCCCCccccc--ccccccEEEeecCcchhh---hccCCCCeeEEEEeccCCC
Q 040471          264 ISKFPLLEDLLLRFCRLPEKVKI--SSNQLKNLHFNSCENLKA---IDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       264 ~~~~~~L~~L~l~~c~~i~~~~~--~~~~L~~L~l~~c~~l~~---~~~~~p~L~~L~~~~~~~~  323 (340)
                      ...+++|+.+++.++......+.  .+++|+.|+++++.-...   -....++|++|+++++...
T Consensus       217 ~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            45678888888887654333222  257888888887754211   2234588888888876543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.3e-09  Score=91.27  Aligned_cols=57  Identities=18%  Similarity=0.039  Sum_probs=27.1

Q ss_pred             cCCCcccEEecccCCCCccccc----ccccccEEEeecCcchhhhc---cCCCCeeEEEEeccCCC
Q 040471          265 SKFPLLEDLLLRFCRLPEKVKI----SSNQLKNLHFNSCENLKAID---TDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       265 ~~~~~L~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~~l~~~~---~~~p~L~~L~~~~~~~~  323 (340)
                      ..+++|+.|+++++. ++.++.    .+++|++|+++++. ++.+.   ...++|+.|++.|++..
T Consensus       145 ~~l~~l~~l~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         145 TPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccchhccccccc-ccccCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCCCC
Confidence            345556666666543 222221    13556666665543 22222   12355666666665443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=9e-09  Score=90.42  Aligned_cols=170  Identities=16%  Similarity=0.129  Sum_probs=91.5

Q ss_pred             CccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCC
Q 040471          142 PQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHK  221 (340)
Q Consensus       142 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~  221 (340)
                      ......+++++.+.++++.+...  .....+++|++|++.++.+++-  . .+..+++|+.|++.+|.......+..+++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~--~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  264 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLTK  264 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             ccccccccccceeeccCCccCCC--CcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCccccccc
Confidence            33445567777777777665442  2234567777777777766321  1 14567777777777764332224455677


Q ss_pred             CceEEecccc-cccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeec
Q 040471          222 LKKLAIYTFY-KDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNS  298 (340)
Q Consensus       222 L~~L~i~~~~-~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~  298 (340)
                      |+.|+++++. ..... ....+.++.+ ....+.+++-.   -+..++++++|+++++. ++++.  ..+++|++|++++
T Consensus       265 L~~L~l~~~~l~~~~~-~~~~~~l~~l-~~~~n~l~~~~---~~~~~~~l~~L~ls~n~-l~~l~~l~~l~~L~~L~L~~  338 (384)
T d2omza2         265 LTELKLGANQISNISP-LAGLTALTNL-ELNENQLEDIS---PISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFAN  338 (384)
T ss_dssp             CSEEECCSSCCCCCGG-GTTCTTCSEE-ECCSSCCSCCG---GGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCS
T ss_pred             CCEeeccCcccCCCCc-cccccccccc-ccccccccccc---ccchhcccCeEECCCCC-CCCCcccccCCCCCEEECCC
Confidence            7777777654 11111 1123344443 33333333211   14456667777776553 34332  2356677777776


Q ss_pred             Cc--chhhhccCCCCeeEEEEeccCCC
Q 040471          299 CE--NLKAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       299 c~--~l~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      |.  .+..+ ..+|+|+.|++.++...
T Consensus       339 n~l~~l~~l-~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         339 NKVSDVSSL-ANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             SCCCCCGGG-GGCTTCCEEECCSSCCC
T ss_pred             CCCCCChhH-cCCCCCCEEECCCCcCC
Confidence            63  12222 34567777777665544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.3e-09  Score=88.84  Aligned_cols=168  Identities=15%  Similarity=0.092  Sum_probs=114.4

Q ss_pred             cCccEEEEEeecCCCCCccccCCc-cccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQ-TIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECP  198 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  198 (340)
                      +++++|++..+..      ..+|. .+..+++|+.|+|+++.+..  .+....+++|++|+++++.++..  ...+...+
T Consensus        31 ~~l~~L~Ls~N~i------~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~  100 (266)
T d1p9ag_          31 KDTTILHLSENLL------YTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLP  100 (266)
T ss_dssp             TTCCEEECTTSCC------SEEEGGGGTTCTTCCEEECTTSCCCE--EECCSCCTTCCEEECCSSCCSSC--CCCTTTCT
T ss_pred             cCCCEEECcCCcC------CCcCHHHhhccccccccccccccccc--ccccccccccccccccccccccc--cccccccc
Confidence            4788888865544      34554 35568899999999987753  23345789999999999877321  22356789


Q ss_pred             CCcEEEecccCCCc--ccccccCCCCceEEecccc-cccc-eeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          199 SLEDFEISACWGLK--NLCVSKAHKLKKLAIYTFY-KDIG-IVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       199 ~L~~L~l~~c~~~~--~~~~~~~~~L~~L~i~~~~-~~~~-~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      +|+.|+++++....  ......+++++.|.+.++. ..+. ......++++.+ .+.++.++.-.. ..+..+++|++|+
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l-~l~~N~l~~~~~-~~~~~l~~L~~L~  178 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-SLANNNLTELPA-GLLNGLENLDTLL  178 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECTTSCCSCCCT-TTTTTCTTCCEEE
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhc-ccccccccccCc-cccccccccceee
Confidence            99999999875432  2234456889999998775 2221 222346777777 666666554222 2356789999999


Q ss_pred             cccCCCCcccccc---cccccEEEeecCc
Q 040471          275 LRFCRLPEKVKIS---SNQLKNLHFNSCE  300 (340)
Q Consensus       275 l~~c~~i~~~~~~---~~~L~~L~l~~c~  300 (340)
                      ++++. ++.++..   .++|+.|++.+.+
T Consensus       179 Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         179 LQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccCC-CcccChhHCCCCCCCEEEecCCC
Confidence            99876 6666443   5889999998744

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.74  E-value=5.1e-08  Score=85.47  Aligned_cols=165  Identities=14%  Similarity=0.074  Sum_probs=117.0

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccccccCCCCce
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLCVSKAHKLKK  224 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~~L~~  224 (340)
                      ...+++|+.|+++++.+..  .+....+++|+.|++.++.++.-  .. ...+++|++|+++++.-.....+..++.++.
T Consensus       215 ~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~  289 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNISPLAGLTALTN  289 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCC--Cc-ccccccCCEeeccCcccCCCCcccccccccc
Confidence            3447899999999998765  23556889999999999987321  11 5679999999998875433334556788999


Q ss_pred             EEecccccccceeeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccc--cccccccEEEeecCcch
Q 040471          225 LAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVK--ISSNQLKNLHFNSCENL  302 (340)
Q Consensus       225 L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~--~~~~~L~~L~l~~c~~l  302 (340)
                      +.+..+.-........+++++.+ .+.+..+++-.   -+..+|+|++|++++|. ++++.  ..+++|++|+++++. +
T Consensus       290 l~~~~n~l~~~~~~~~~~~l~~L-~ls~n~l~~l~---~l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L~l~~N~-l  363 (384)
T d2omza2         290 LELNENQLEDISPISNLKNLTYL-TLYFNNISDIS---PVSSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHNQ-I  363 (384)
T ss_dssp             EECCSSCCSCCGGGGGCTTCSEE-ECCSSCCSCCG---GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-C
T ss_pred             ccccccccccccccchhcccCeE-ECCCCCCCCCc---ccccCCCCCEEECCCCC-CCCChhHcCCCCCCEEECCCCc-C
Confidence            99887761111113356778777 77777776532   16779999999999885 55443  237899999998874 3


Q ss_pred             hhh--ccCCCCeeEEEEecc
Q 040471          303 KAI--DTDTPNLLSFTFSYD  320 (340)
Q Consensus       303 ~~~--~~~~p~L~~L~~~~~  320 (340)
                      ..+  ....++|++|+++++
T Consensus       364 ~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         364 SDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CBCGGGTTCTTCSEEECCCE
T ss_pred             CCChhhccCCCCCEeeCCCC
Confidence            332  245689999998763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.71  E-value=2e-08  Score=87.20  Aligned_cols=203  Identities=15%  Similarity=0.100  Sum_probs=132.4

Q ss_pred             cCccEEEEEeecCCC-----CCccccCCccccCCCCccEEEeeceeCCCCCCc----ccccCcccceEecceEeeChHHH
Q 040471          120 NGIKDLVLMVHNMTQ-----EDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT----TTIRLDSLKKLTLENVYINDQMF  190 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~l  190 (340)
                      ++++.+++..+....     ......+...+..+++|+.|+|++|.++.....    ....+++|+.|++.++.+++...
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~  138 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  138 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccc
Confidence            688888886543210     001122333455688999999999887653222    22357899999999888754433


Q ss_pred             HHH------------HhcCCCCcEEEecccCCC----ccc--ccccCCCCceEEecccccccc-------eeeecCcCcc
Q 040471          191 QKL------------TNECPSLEDFEISACWGL----KNL--CVSKAHKLKKLAIYTFYKDIG-------IVEIVVPSLQ  245 (340)
Q Consensus       191 ~~l------------~~~~p~L~~L~l~~c~~~----~~~--~~~~~~~L~~L~i~~~~~~~~-------~~~~~~p~L~  245 (340)
                      ..+            ....+.|+.+.++++.--    ..+  .+..+++|+.|++..+.-...       ......++|+
T Consensus       139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~  218 (344)
T d2ca6a1         139 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK  218 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCC
T ss_pred             ccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhc
Confidence            332            245788999998876321    111  133568999999998762211       1122567888


Q ss_pred             eEeccCceeeccHH---HHHHHcCCCcccEEecccCCCCccccc----------ccccccEEEeecCcc-------h-hh
Q 040471          246 QQLMLTSVWFMDEE---FDRFISKFPLLEDLLLRFCRLPEKVKI----------SSNQLKNLHFNSCEN-------L-KA  304 (340)
Q Consensus       246 ~ll~l~~~~i~~~~---~~~l~~~~~~L~~L~l~~c~~i~~~~~----------~~~~L~~L~l~~c~~-------l-~~  304 (340)
                      .| ++.++.+++.+   +...+..+++|++|++++|. +++.+.          ..+.|++|+++++.-       + +.
T Consensus       219 ~L-~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~  296 (344)
T d2ca6a1         219 VL-DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  296 (344)
T ss_dssp             EE-ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             cc-ccccccccccccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHH
Confidence            87 88888887764   44557889999999999886 444322          246799999998752       1 22


Q ss_pred             hccCCCCeeEEEEeccCCCC
Q 040471          305 IDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       305 ~~~~~p~L~~L~~~~~~~~~  324 (340)
                      +....++|+.|+++|+....
T Consensus       297 l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         297 IDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHCTTCCEEECTTSBSCT
T ss_pred             HHccCCCCCEEECCCCcCCC
Confidence            33357899999999977654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.71  E-value=1.7e-08  Score=87.36  Aligned_cols=69  Identities=20%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             cCCCcccEEecccCCCCcccccccccccEEEeecCcchhhhccCCCCeeEEEEeccCCCC-cceecccccccccc
Q 040471          265 SKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFSYDFNPI-PTIAMNALSMETLF  338 (340)
Q Consensus       265 ~~~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~-~~~~~~~~~~~~l~  338 (340)
                      ..+++|++|++++|. ++.++..+++|++|++++|. +..+....++|++|+++++.... |.   ...+++.|+
T Consensus       281 ~~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~L~~lp~---~~~~L~~L~  350 (353)
T d1jl5a_         281 DLPPSLEELNVSNNK-LIELPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNPLREFPD---IPESVEDLR  350 (353)
T ss_dssp             CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEE
T ss_pred             ccCCCCCEEECCCCc-cCccccccCCCCEEECCCCc-CCccccccCCCCEEECcCCcCCCCCc---cccccCeeE
Confidence            446899999999875 66777678899999998774 56666666799999999876543 32   223455554

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.3e-09  Score=79.21  Aligned_cols=40  Identities=35%  Similarity=0.582  Sum_probs=36.4

Q ss_pred             cCCccCCCc----hhHHHHHhcCCchhhhhhhhcccccchhhhc
Q 040471            6 GMDRITELP----TFIIHHIMSYLSAKEIARTSILSKRWCLFCI   45 (340)
Q Consensus         6 ~~d~i~~LP----d~il~~Ifs~L~~~d~~~~s~vskrW~~l~~   45 (340)
                      .+|.++.||    |||+.+||+||+.+|++++++|||+|+++..
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~   50 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS   50 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHc
Confidence            469999999    5999999999999999999999999998643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.2e-08  Score=86.08  Aligned_cols=194  Identities=12%  Similarity=0.027  Sum_probs=94.1

Q ss_pred             CccEEEEEeecCCCCCccccCCcc-ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEee-ChHHHHHHHhcCC
Q 040471          121 GIKDLVLMVHNMTQEDTVCILPQT-IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECP  198 (340)
Q Consensus       121 ~l~~L~l~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p  198 (340)
                      ++++|+++.+..      ..+|.. +..+++|++|+++++.+..........++.++.+....... ..- -...+..++
T Consensus        33 ~~~~L~Ls~N~i------~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~l~  105 (284)
T d1ozna_          33 ASQRIFLHGNRI------SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLG  105 (284)
T ss_dssp             TCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCT
T ss_pred             CCCEEECcCCcC------CCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cchhhcccc
Confidence            566666654433      344443 44567777777777654332222333445555554432211 100 011234566


Q ss_pred             CCcEEEecccCCC--cccccccCCCCceEEecccc-cccce-eeecCcCcceEeccCceeeccHHHHHHHcCCCcccEEe
Q 040471          199 SLEDFEISACWGL--KNLCVSKAHKLKKLAIYTFY-KDIGI-VEIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLL  274 (340)
Q Consensus       199 ~L~~L~l~~c~~~--~~~~~~~~~~L~~L~i~~~~-~~~~~-~~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~  274 (340)
                      +|++|++.++...  .......+++|+.+++.++. ..+.. .....++|+.+ .+.++.++.-.- ..+.++++|+.++
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L-~l~~N~l~~l~~-~~f~~l~~L~~l~  183 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL-FLHGNRISSVPE-RAFRGLHSLDRLL  183 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-ECCSSCCCEECT-TTTTTCTTCCEEE
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhc-ccccCcccccch-hhhccccccchhh
Confidence            7777777666431  11223334666666666554 11111 11134556655 455444432111 2344667777777


Q ss_pred             cccCCCCccccc---ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471          275 LRFCRLPEKVKI---SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       275 l~~c~~i~~~~~---~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      ++++....-.+.   .+++|++|+++++.-.   .......++|+.|+++|+...
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            776553221121   1466777777665432   122234567777777765544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.7e-08  Score=83.03  Aligned_cols=182  Identities=15%  Similarity=0.084  Sum_probs=122.3

Q ss_pred             ccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--
Q 040471          137 TVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--  214 (340)
Q Consensus       137 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--  214 (340)
                      +...+|..+.  +++++|+|+++.+..-....+..+++|+.|+++++.+..-. ......++.++.+.+.....+..+  
T Consensus        22 ~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~   98 (284)
T d1ozna_          22 GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDP   98 (284)
T ss_dssp             CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            3456665443  57899999998875422234678899999999988762211 123456789999988776665544  


Q ss_pred             -ccccCCCCceEEecccc-ccccee-eecCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCccccc----c
Q 040471          215 -CVSKAHKLKKLAIYTFY-KDIGIV-EIVVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKI----S  287 (340)
Q Consensus       215 -~~~~~~~L~~L~i~~~~-~~~~~~-~~~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~----~  287 (340)
                       .+.++++|+.|+++.+. ...... ....++|+.+ .+.+..++.-. ...+..+++|++|+++++. ++.++.    .
T Consensus        99 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l-~l~~N~l~~i~-~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~  175 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL-YLQDNALQALP-DDTFRDLGNLTHLFLHGNR-ISSVPERAFRG  175 (284)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE-ECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTT
T ss_pred             hhhcccccCCEEecCCcccccccccccchhcccchh-hhccccccccC-hhHhccccchhhcccccCc-ccccchhhhcc
Confidence             45668999999999887 222222 2245677777 66665554321 1235678999999999875 444322    3


Q ss_pred             cccccEEEeecCcch---hhhccCCCCeeEEEEeccCCCC
Q 040471          288 SNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNPI  324 (340)
Q Consensus       288 ~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~  324 (340)
                      +++|+.+.+.++.-.   .......++|++|++.++....
T Consensus       176 l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ccccchhhhhhccccccChhHhhhhhhccccccccccccc
Confidence            689999999987653   2223455899999999977664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.62  E-value=2.2e-09  Score=85.67  Aligned_cols=88  Identities=20%  Similarity=0.226  Sum_probs=49.0

Q ss_pred             ccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc-ccc
Q 040471          139 CILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL-CVS  217 (340)
Q Consensus       139 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-~~~  217 (340)
                      ..++..+..+++|++|+|+++.+..-  +....+++|++|+++++.++.  +..+...+++|+.|+++++. +..+ .+.
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~-i~~l~~~~  112 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IASLSGIE  112 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEE-CCCHHHHH
T ss_pred             hhhhhHHhcccccceeECcccCCCCc--ccccCCccccChhhccccccc--cccccccccccccccccccc-cccccccc
Confidence            44455566667777777777666541  234566777777777776621  11222334567777776652 3222 233


Q ss_pred             cCCCCceEEecccc
Q 040471          218 KAHKLKKLAIYTFY  231 (340)
Q Consensus       218 ~~~~L~~L~i~~~~  231 (340)
                      .+++|+.|+++++.
T Consensus       113 ~l~~L~~L~L~~N~  126 (198)
T d1m9la_         113 KLVNLRVLYMSNNK  126 (198)
T ss_dssp             HHHHSSEEEESEEE
T ss_pred             ccccccccccccch
Confidence            45666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.7e-08  Score=80.82  Aligned_cols=82  Identities=12%  Similarity=0.137  Sum_probs=37.0

Q ss_pred             CccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc---ccccCCCCceEE
Q 040471          150 SMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL---CVSKAHKLKKLA  226 (340)
Q Consensus       150 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~---~~~~~~~L~~L~  226 (340)
                      ++++|+++++.+..-....+.++++|++|+++++.+....-...+..++.++++.+..+..+...   .+.++++|+.+.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            55666666554432111123445666666665554311000011234555566655555443332   123455666666


Q ss_pred             ecccc
Q 040471          227 IYTFY  231 (340)
Q Consensus       227 i~~~~  231 (340)
                      +.++.
T Consensus       110 l~~~~  114 (242)
T d1xwdc1         110 ISNTG  114 (242)
T ss_dssp             EESCC
T ss_pred             cchhh
Confidence            65543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.57  E-value=4.8e-08  Score=83.45  Aligned_cols=173  Identities=13%  Similarity=0.027  Sum_probs=101.8

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|++..+..    -...+|..+..+++|++|+|+++.+..........++.|+.+++..+..... +...+..++.
T Consensus        76 ~~L~~L~Ls~~N~----l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~  150 (313)
T d1ogqa_          76 PYLNFLYIGGINN----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPN  150 (313)
T ss_dssp             TTCSEEEEEEETT----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTT
T ss_pred             ccccccccccccc----cccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCcc
Confidence            5788888876543    2236788888888888888888776443334456678888888887765211 1122466788


Q ss_pred             CcEEEecccCCCccc--ccccCCCC-ceEEecccc-c------------------------ccceeeecCcCcceEeccC
Q 040471          200 LEDFEISACWGLKNL--CVSKAHKL-KKLAIYTFY-K------------------------DIGIVEIVVPSLQQQLMLT  251 (340)
Q Consensus       200 L~~L~l~~c~~~~~~--~~~~~~~L-~~L~i~~~~-~------------------------~~~~~~~~~p~L~~ll~l~  251 (340)
                      |+.++++++.....+  .+..+.++ +.+.++.+. .                        .........++++.+ .+.
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l-~~~  229 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI-HLA  229 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEE-ECC
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence            888888876432111  11122222 444433322 0                        000011133445554 555


Q ss_pred             ceeeccHHHHHHHcCCCcccEEecccCCCCcccccc---cccccEEEeecCc
Q 040471          252 SVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKIS---SNQLKNLHFNSCE  300 (340)
Q Consensus       252 ~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~---~~~L~~L~l~~c~  300 (340)
                      +..++...-  -+..+++|+.|++++|..-+.++..   +++|++|+++++.
T Consensus       230 ~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         230 KNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             SSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ccccccccc--ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence            555544321  2567899999999988754344443   5899999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.6e-08  Score=75.76  Aligned_cols=80  Identities=13%  Similarity=0.083  Sum_probs=35.0

Q ss_pred             CCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCcccc---cccCCCCc
Q 040471          147 SAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNLC---VSKAHKLK  223 (340)
Q Consensus       147 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~---~~~~~~L~  223 (340)
                      ++.+|+.|+|+++.+..- ......+++|+.|+++++.++.  +.. +..+|+|++|++++|.- ..+.   ...+++|+
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   90 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhcccccc-cCCCccccccccccc
Confidence            344555555555554331 1122345555555555554421  011 23455555555555432 2111   12345555


Q ss_pred             eEEecccc
Q 040471          224 KLAIYTFY  231 (340)
Q Consensus       224 ~L~i~~~~  231 (340)
                      .|+++++.
T Consensus        91 ~L~L~~N~   98 (162)
T d1a9na_          91 ELILTNNS   98 (162)
T ss_dssp             EEECCSCC
T ss_pred             cceecccc
Confidence            55555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.6e-08  Score=77.78  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=74.5

Q ss_pred             ccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc-ccccCCCCceEEecccccccceeeecCcCcce
Q 040471          168 TTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL-CVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQ  246 (340)
Q Consensus       168 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~  246 (340)
                      ...++.+|++|+|.++.++.  ++.+...+++|+.|+++++. +..+ .+..+++|+.|+++++.  +..+         
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~--i~~l---------   78 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR--ICRI---------   78 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC--CCEE---------
T ss_pred             hccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc--ccCC---------
Confidence            34567789999999998732  23345678999999999974 3333 45667899999998876  1111         


Q ss_pred             EeccCceeeccHHHHHHHcCCCcccEEecccCCC--Ccccc--cccccccEEEeecCcch------hhhccCCCCeeEEE
Q 040471          247 QLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRL--PEKVK--ISSNQLKNLHFNSCENL------KAIDTDTPNLLSFT  316 (340)
Q Consensus       247 ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~--i~~~~--~~~~~L~~L~l~~c~~l------~~~~~~~p~L~~L~  316 (340)
                               ..    .++..+++|++|++++|..  +.++.  ..+++|++|++.+|+--      ..+....|+|+.|+
T Consensus        79 ---------~~----~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          79 ---------GE----GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ---------CS----CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ---------Cc----cccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence                     00    1233467777777776542  12211  12567777777766431      12233457777765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.52  E-value=1.9e-07  Score=79.25  Aligned_cols=58  Identities=17%  Similarity=0.107  Sum_probs=37.5

Q ss_pred             CCCcccEEecccCCCCccccc---ccccccEEEeecCcch---hhhccCCCCeeEEEEeccCCC
Q 040471          266 KFPLLEDLLLRFCRLPEKVKI---SSNQLKNLHFNSCENL---KAIDTDTPNLLSFTFSYDFNP  323 (340)
Q Consensus       266 ~~~~L~~L~l~~c~~i~~~~~---~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~  323 (340)
                      .+++|++|+++++........   .++.+++|.++++.--   .......++|+.|+++++...
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc
Confidence            367888888887654332222   2467888888776432   222245689999999997654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.1e-08  Score=88.75  Aligned_cols=113  Identities=17%  Similarity=0.193  Sum_probs=75.0

Q ss_pred             cccceEEEEEeccCcCCChhhHHHHHHH-HHHcCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc
Q 040471           89 FRMQELRLFQSFLDVKGSAPLLDKWIGL-AVDNGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT  167 (340)
Q Consensus        89 ~~l~~l~l~~~~~~~~~~~~~l~~~l~~-~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~  167 (340)
                      ..++++.+...    ....   ..|... ...++++.|++..|... ..+...++..+..+++|+.|+|+++.+.+....
T Consensus         2 ~~l~~ld~~~~----~i~~---~~~~~l~~~l~~l~~L~L~~~~i~-~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           2 LDIQSLDIQCE----ELSD---ARWAELLPLLQQCQVVRLDDCGLT-EARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEEESC----CCCH---HHHHHHHHHHTTCSEEEEESSCCC-HHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCCEEEeeCC----cCCh---HHHHHHHHhCCCCCEEEeCCCCCC-HHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            35677777644    2232   334432 33489999999887641 112345566677899999999999876431111


Q ss_pred             c-c----ccCcccceEecceEeeChHHHHHH---HhcCCCCcEEEecccC
Q 040471          168 T-T----IRLDSLKKLTLENVYINDQMFQKL---TNECPSLEDFEISACW  209 (340)
Q Consensus       168 ~-~----~~~~~L~~L~L~~~~~~~~~l~~l---~~~~p~L~~L~l~~c~  209 (340)
                      . .    ....+|++|+|++|.+++..+..+   +..+++|++|+++++.
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            1 1    123579999999999976655544   4679999999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.40  E-value=1.2e-07  Score=82.05  Aligned_cols=178  Identities=12%  Similarity=0.063  Sum_probs=117.1

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCc-------------ccccCcccceEecceEeeC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDT-------------TTIRLDSLKKLTLENVYIN  186 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-------------~~~~~~~L~~L~L~~~~~~  186 (340)
                      +++++|++..+... ......+...+..+++|++|++++|.+......             .....+.|+.+.+.++.++
T Consensus        93 ~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          93 PKLHTVRLSDNAFG-PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             TTCCEEECCSCCCC-TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccccccccccc-cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            57899888655431 113344555566688999999988765321000             1124678999999888876


Q ss_pred             hHHHHH---HHhcCCCCcEEEecccCCCc----c-c--ccccCCCCceEEeccccc---cccee---eecCcCcceEecc
Q 040471          187 DQMFQK---LTNECPSLEDFEISACWGLK----N-L--CVSKAHKLKKLAIYTFYK---DIGIV---EIVVPSLQQQLML  250 (340)
Q Consensus       187 ~~~l~~---l~~~~p~L~~L~l~~c~~~~----~-~--~~~~~~~L~~L~i~~~~~---~~~~~---~~~~p~L~~ll~l  250 (340)
                      +..+..   ....++.|++|++++|.--.    . +  .+..+++|+.|+++++.-   +...+   --.+++|+.| .+
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L-~L  250 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL-GL  250 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE-EC
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh-hh
Confidence            555444   35678899999998875311    1 1  244578999999987751   11112   2257888888 88


Q ss_pred             CceeeccHHHHHHH---cC--CCcccEEecccCCCCccccc---------ccccccEEEeecCc
Q 040471          251 TSVWFMDEEFDRFI---SK--FPLLEDLLLRFCRLPEKVKI---------SSNQLKNLHFNSCE  300 (340)
Q Consensus       251 ~~~~i~~~~~~~l~---~~--~~~L~~L~l~~c~~i~~~~~---------~~~~L~~L~l~~c~  300 (340)
                      +++.+++.+...+.   ..  .+.|++|++++|. +++.+.         .+++|+.|+++++.
T Consensus       251 s~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         251 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            88889887665543   33  4679999999875 554322         25789999998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=2.6e-07  Score=67.31  Aligned_cols=82  Identities=12%  Similarity=0.102  Sum_probs=40.7

Q ss_pred             ccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCC--Cccc-ccccCCC
Q 040471          145 IFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWG--LKNL-CVSKAHK  221 (340)
Q Consensus       145 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~--~~~~-~~~~~~~  221 (340)
                      +..+++|++|+++++.+.. .++....+++|++|+++++.++.  +.. +..+|+|++|+++++.-  +..+ .+..+++
T Consensus        16 l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             cccCCCCCEEECCCCccCc-chhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            4556666666666665543 22234456666666666665521  111 34456666666655432  1111 2233455


Q ss_pred             CceEEeccc
Q 040471          222 LKKLAIYTF  230 (340)
Q Consensus       222 L~~L~i~~~  230 (340)
                      |+.|++++.
T Consensus        92 L~~L~l~~N  100 (124)
T d1dcea3          92 LVLLNLQGN  100 (124)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEECCCC
Confidence            555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=1.1e-06  Score=63.99  Aligned_cols=115  Identities=16%  Similarity=0.134  Sum_probs=52.6

Q ss_pred             EEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc-ccccCCCCceEEecccc
Q 040471          153 TLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL-CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       153 ~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-~~~~~~~L~~L~i~~~~  231 (340)
                      .|+|+++.+...  +....+++|++|+++++.++.  +...+..+++|+.|+++++.- ..+ .+..+++|++|+++++.
T Consensus         2 ~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i-~~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNAL-ENVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC--cccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccc-cccCccccccccCeEECCCCc
Confidence            455555554321  234455666666666655521  111134456666666665422 222 34445666666666554


Q ss_pred             -ccccee--eecCcCcceEeccCceeeccH--HHHHHHcCCCcccEE
Q 040471          232 -KDIGIV--EIVVPSLQQQLMLTSVWFMDE--EFDRFISKFPLLEDL  273 (340)
Q Consensus       232 -~~~~~~--~~~~p~L~~ll~l~~~~i~~~--~~~~l~~~~~~L~~L  273 (340)
                       .....+  ...+|+|+.+ .+.+..+++.  ....+...+|+|+.|
T Consensus        77 i~~~~~~~~l~~~~~L~~L-~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLL-NLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEE-ECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEE-ECCCCcCCcCccHHHHHHHHCcCcceE
Confidence             112111  1235555555 5555444321  122334445655554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.5e-06  Score=70.92  Aligned_cols=171  Identities=12%  Similarity=0.046  Sum_probs=90.3

Q ss_pred             cCccEEEEEeecCCCCCccccCCcc-ccCCCCccEEEeeceeCCCC-CCcccccCcccceEecceEee-ChHHHHHHHhc
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQT-IFSAKSMATLSLFGCRMEQP-SDTTTIRLDSLKKLTLENVYI-NDQMFQKLTNE  196 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~  196 (340)
                      .++++|++..+..      ..+|.. +..+++|++|+++++.+... ....+..+++++++.+..+.. .. .....+..
T Consensus        29 ~~l~~L~Ls~n~i------~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~  101 (242)
T d1xwdc1          29 RNAIELRFVLTKL------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQN  101 (242)
T ss_dssp             SCCSEEEEESCCC------CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEEC
T ss_pred             CCCCEEECcCCcC------CccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc-cccccccc
Confidence            4788888876654      456654 45689999999998765431 112345678888887765422 11 11123467


Q ss_pred             CCCCcEEEecccCCCcccccccCCCCceEEecccc-cccceee----ecCc-CcceEeccCceeeccHHHHHHHcCCCcc
Q 040471          197 CPSLEDFEISACWGLKNLCVSKAHKLKKLAIYTFY-KDIGIVE----IVVP-SLQQQLMLTSVWFMDEEFDRFISKFPLL  270 (340)
Q Consensus       197 ~p~L~~L~l~~c~~~~~~~~~~~~~L~~L~i~~~~-~~~~~~~----~~~p-~L~~ll~l~~~~i~~~~~~~l~~~~~~L  270 (340)
                      +++|++|.+.++.-...-....+..++.+...... .....+.    ...+ .++.+ .+.+..++.-..  .....+++
T Consensus       102 l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L-~l~~n~l~~i~~--~~~~~~~l  178 (242)
T d1xwdc1         102 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL-WLNKNGIQEIHN--CAFNGTQL  178 (242)
T ss_dssp             CTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE-ECCSSCCCEECT--TTTTTCCE
T ss_pred             cccccccccchhhhcccccccccccccccccccccccccccccccccccccccceee-eccccccccccc--ccccchhh
Confidence            89999999988743221122223444544433222 1111111    1122 33333 444433332111  11234556


Q ss_pred             cEEecccCCCCccccc----ccccccEEEeecCc
Q 040471          271 EDLLLRFCRLPEKVKI----SSNQLKNLHFNSCE  300 (340)
Q Consensus       271 ~~L~l~~c~~i~~~~~----~~~~L~~L~l~~c~  300 (340)
                      +++....+..++.++.    .+++|++|+++++.
T Consensus       179 ~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             hccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            6665544555655543    25788888887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.04  E-value=2.8e-07  Score=73.10  Aligned_cols=59  Identities=20%  Similarity=0.127  Sum_probs=38.7

Q ss_pred             ccccCcccceEecceEeeC-hHHHHHHHhcCCCCcEEEecccCCCcccc--cccCCCCceEEecccc
Q 040471          168 TTIRLDSLKKLTLENVYIN-DQMFQKLTNECPSLEDFEISACWGLKNLC--VSKAHKLKKLAIYTFY  231 (340)
Q Consensus       168 ~~~~~~~L~~L~L~~~~~~-~~~l~~l~~~~p~L~~L~l~~c~~~~~~~--~~~~~~L~~L~i~~~~  231 (340)
                      ....+++|++|+|+++.++ -+.    +..+++|+.|++++|. +..+.  ...+++|+.|+++++.
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~----l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCC----HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEE
T ss_pred             HHhcccccceeECcccCCCCccc----ccCCccccChhhcccc-ccccccccccccccccccccccc
Confidence            3456888999999888883 222    3467888888888873 22221  1123577888777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=7e-06  Score=72.84  Aligned_cols=111  Identities=13%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             CCccEEEeeceeCCCC-CCcccccCcccceEecceEeeChHHHHHHH---hcCCCCcEEEecccCCCcccccc-------
Q 040471          149 KSMATLSLFGCRMEQP-SDTTTIRLDSLKKLTLENVYINDQMFQKLT---NECPSLEDFEISACWGLKNLCVS-------  217 (340)
Q Consensus       149 ~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~---~~~p~L~~L~l~~c~~~~~~~~~-------  217 (340)
                      .+|+.|++++..+.+. +......++++|+|+|.+|.+++.+++.+.   ..+|+|++|+++++. +++.++.       
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHh
Confidence            3567777777666442 122234567777777777777665555443   567777777777653 3221110       


Q ss_pred             -cCCCCceEEecccccccceeeecCcCcceEeccCceeeccHHH---HHHHcCCCcccEEecccCCCCccc
Q 040471          218 -KAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEEF---DRFISKFPLLEDLLLRFCRLPEKV  284 (340)
Q Consensus       218 -~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~~---~~l~~~~~~L~~L~l~~c~~i~~~  284 (340)
                       ...+|++|++++                       +.+++++.   ...+..+++|++|++++|. +++.
T Consensus        81 ~~~~~L~~L~L~~-----------------------n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~  127 (460)
T d1z7xw1          81 TPSCKIQKLSLQN-----------------------CCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDA  127 (460)
T ss_dssp             STTCCCCEEECTT-----------------------SCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHH
T ss_pred             cCCCCCCEEECCC-----------------------CCccccccccccchhhcccccccccccccc-chhh
Confidence             113455555544                       44666543   4456789999999999765 5443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.90  E-value=6.4e-06  Score=64.57  Aligned_cols=91  Identities=20%  Similarity=0.222  Sum_probs=59.9

Q ss_pred             ccccCCccccCCCCccEEEeeceeCCC-CCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc-
Q 040471          137 TVCILPQTIFSAKSMATLSLFGCRMEQ-PSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL-  214 (340)
Q Consensus       137 ~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~-  214 (340)
                      +...+|..+.  +++++|+|+++.+.. .....+..+++|+.|++.++.+..- ....+...++|++|+++++. +..+ 
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~-l~~l~   94 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEIS   94 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEEC
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeecccc-ccccC
Confidence            3456666553  678899999887753 2233446788899999988776221 12234567888888888773 2222 


Q ss_pred             --ccccCCCCceEEecccc
Q 040471          215 --CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       215 --~~~~~~~L~~L~i~~~~  231 (340)
                        .+.++++|++|+++++.
T Consensus        95 ~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             SSSSTTCTTCCEEECCSSC
T ss_pred             HHHHhCCCcccccccCCcc
Confidence              34567888888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.61  E-value=5.9e-05  Score=57.45  Aligned_cols=30  Identities=10%  Similarity=-0.044  Sum_probs=16.3

Q ss_pred             ccCceeeccHHHHH---HHcCCCcccEEecccC
Q 040471          249 MLTSVWFMDEEFDR---FISKFPLLEDLLLRFC  278 (340)
Q Consensus       249 ~l~~~~i~~~~~~~---l~~~~~~L~~L~l~~c  278 (340)
                      .++++.+++++...   .+...+.|++|+++++
T Consensus        78 ~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          78 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             eeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            34444455554333   3455566777777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.61  E-value=2e-05  Score=61.60  Aligned_cols=106  Identities=10%  Similarity=0.044  Sum_probs=73.7

Q ss_pred             cCccEEEEEeecCCCCCccccCCccccCCCCccEEEeeceeCCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCC
Q 040471          120 NGIKDLVLMVHNMTQEDTVCILPQTIFSAKSMATLSLFGCRMEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPS  199 (340)
Q Consensus       120 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  199 (340)
                      .++++|+++.+..    ....-+..+...++|+.|+|+++.+..........+++|++|+|+++.++.-. ...+...++
T Consensus        29 ~~l~~L~Ls~N~i----~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDNEL----GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSCCC----CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTT
T ss_pred             CCCCEEEeCCCCC----cccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccC-HHHHhCCCc
Confidence            4788888876654    11122334456899999999998775544445667899999999998772110 123567899


Q ss_pred             CcEEEecccCCCccc---ccccCCCCceEEecccc
Q 040471          200 LEDFEISACWGLKNL---CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       200 L~~L~l~~c~~~~~~---~~~~~~~L~~L~i~~~~  231 (340)
                      |++|+|+++. +..+   .+..+++|++|++.+..
T Consensus       104 L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             ccccccCCcc-ccccCHHHhcCCcccccccccccc
Confidence            9999999974 3332   34567899999998765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.41  E-value=0.00059  Score=57.73  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=52.9

Q ss_pred             cCcCcceEeccCceeeccHHHHHHHcCCCcccEEecccCCCCcccccccccccEEEeecCcchhhhccCCCCeeEEEEe
Q 040471          240 VVPSLQQQLMLTSVWFMDEEFDRFISKFPLLEDLLLRFCRLPEKVKISSNQLKNLHFNSCENLKAIDTDTPNLLSFTFS  318 (340)
Q Consensus       240 ~~p~L~~ll~l~~~~i~~~~~~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~  318 (340)
                      .+|+|+.| +++++.++.     +...+++|+.|++++|. +++++...++|++|++++|. ++.+....+.|++|.++
T Consensus       282 ~~~~L~~L-~Ls~N~l~~-----lp~~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         282 LPPSLEEL-NVSNNKLIE-----LPALPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREFPDIPESVEDLRMN  352 (353)
T ss_dssp             CCTTCCEE-ECCSSCCSC-----CCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             cCCCCCEE-ECCCCccCc-----cccccCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence            45778877 666665542     33567999999999764 77777777899999999986 67776655678888764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.37  E-value=0.00032  Score=53.07  Aligned_cols=14  Identities=14%  Similarity=0.078  Sum_probs=7.7

Q ss_pred             HcCCCcccEEeccc
Q 040471          264 ISKFPLLEDLLLRF  277 (340)
Q Consensus       264 ~~~~~~L~~L~l~~  277 (340)
                      +...++|++++++.
T Consensus        98 l~~~~~L~~l~L~l  111 (166)
T d1io0a_          98 LQSNTSLIELRIDN  111 (166)
T ss_dssp             GGGCSSCCEEECCC
T ss_pred             HHhCccccEEeecc
Confidence            34456666655553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.09  E-value=0.00047  Score=52.10  Aligned_cols=112  Identities=14%  Similarity=0.132  Sum_probs=60.1

Q ss_pred             CCCCccEEEeece-eCCCCCC----cccccCcccceEecceEeeChHHHHHH---HhcCCCCcEEEecccCCCc----cc
Q 040471          147 SAKSMATLSLFGC-RMEQPSD----TTTIRLDSLKKLTLENVYINDQMFQKL---TNECPSLEDFEISACWGLK----NL  214 (340)
Q Consensus       147 ~~~~L~~L~L~~~-~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~l~~l---~~~~p~L~~L~l~~c~~~~----~~  214 (340)
                      +.++|++|+++++ .++....    ......++|++|+++++.+++++...+   +...+.++.+++.+|..-.    .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            4566777777663 3433111    111245667777777666655444433   3445666666666553211    01


Q ss_pred             --ccccCCCCceEEecccccccceeeecCcCcceEeccCceeeccHH---HHHHHcCCCcccEEecccCC
Q 040471          215 --CVSKAHKLKKLAIYTFYKDIGIVEIVVPSLQQQLMLTSVWFMDEE---FDRFISKFPLLEDLLLRFCR  279 (340)
Q Consensus       215 --~~~~~~~L~~L~i~~~~~~~~~~~~~~p~L~~ll~l~~~~i~~~~---~~~l~~~~~~L~~L~l~~c~  279 (340)
                        .+...++|+.+.++                     +.+..+++++   +...+..+++|++|+++...
T Consensus        95 ~~~l~~~~~L~~l~L~---------------------l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          95 VEALQSNTSLIELRID---------------------NQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHGGGGCSSCCEEECC---------------------CCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHhCccccEEeec---------------------cCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence              12233555555544                     3334566654   44556788999999997543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=7.3e-05  Score=56.60  Aligned_cols=16  Identities=25%  Similarity=0.274  Sum_probs=10.5

Q ss_pred             HHHHHHcCCCcccEEe
Q 040471          259 EFDRFISKFPLLEDLL  274 (340)
Q Consensus       259 ~~~~l~~~~~~L~~L~  274 (340)
                      ....++..+|+|+.|+
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence            3445667778777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.85  E-value=0.00014  Score=55.29  Aligned_cols=17  Identities=18%  Similarity=0.014  Sum_probs=8.5

Q ss_pred             HHHHcCCCcccEEeccc
Q 040471          261 DRFISKFPLLEDLLLRF  277 (340)
Q Consensus       261 ~~l~~~~~~L~~L~l~~  277 (340)
                      ...+...+.|++|+++.
T Consensus       124 ~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         124 MMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHCSSCCEEECCC
T ss_pred             HHHHHhCCCccEeeCcC
Confidence            33344455555555543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0016  Score=48.46  Aligned_cols=92  Identities=13%  Similarity=0.049  Sum_probs=55.2

Q ss_pred             cccCCccccCCCCccEEEeecee-CCCCCCcccccCcccceEecceEeeChHHHHHHHhcCCCCcEEEecccCCCccc--
Q 040471          138 VCILPQTIFSAKSMATLSLFGCR-MEQPSDTTTIRLDSLKKLTLENVYINDQMFQKLTNECPSLEDFEISACWGLKNL--  214 (340)
Q Consensus       138 ~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~--  214 (340)
                      ....|..+...++|++|.+.++. +..-....+.++++|+.|+|.++.++.-. ...+...++|++|+|+++.- ..+  
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~l-~~l~~   97 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL-ESLSW   97 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC-SCCCS
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCCC-cccCh
Confidence            34556666677888888887653 44322234556788888888887762111 12345678888888887642 222  


Q ss_pred             ccccCCCCceEEecccc
Q 040471          215 CVSKAHKLKKLAIYTFY  231 (340)
Q Consensus       215 ~~~~~~~L~~L~i~~~~  231 (340)
                      .+-...+|+.|++++..
T Consensus        98 ~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          98 KTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             TTTCSCCCCEEECCSSC
T ss_pred             hhhccccccccccCCCc
Confidence            11122467777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0036  Score=46.45  Aligned_cols=14  Identities=36%  Similarity=0.325  Sum_probs=6.7

Q ss_pred             cCCCcccEEecccC
Q 040471          265 SKFPLLEDLLLRFC  278 (340)
Q Consensus       265 ~~~~~L~~L~l~~c  278 (340)
                      .++++|++|+++++
T Consensus        77 ~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          77 HFTPRLSRLNLSFN   90 (156)
T ss_dssp             GSCSCCCEEECCSS
T ss_pred             cccccccceeccCC
Confidence            33455555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.00047  Score=51.90  Aligned_cols=60  Identities=17%  Similarity=0.225  Sum_probs=32.8

Q ss_pred             CCCccEEEeeceeCCCCC--CcccccCcccceEecceEee-ChHHHHHHHhcCCCCcEEEecccC
Q 040471          148 AKSMATLSLFGCRMEQPS--DTTTIRLDSLKKLTLENVYI-NDQMFQKLTNECPSLEDFEISACW  209 (340)
Q Consensus       148 ~~~L~~L~L~~~~~~~~~--~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~  209 (340)
                      +++|+.|+|+++.+....  ......+++|+.|+++++.+ +...+..+  ..++|++|.+.++.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l--~~~~L~~L~L~~Np  126 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI--KGLKLEELWLDGNS  126 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH--TTCCCSSCCCTTST
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh--hccccceeecCCCC
Confidence            566666666666654311  11233566777777777666 33444332  23456677766653