Citrus Sinensis ID: 040477

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
Protein Sequence
MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHcccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHccccccHHcccccccEEEEEEcccccEEEcccccHHHHHHHccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHHHccccccccccccHcccccccccEEEEEEccccccEEEEEHHHHccHHHHHHHHHHHHcccccHHHcccccccEEEEEcccccEEEEccccHHHHHHHHHHHHEccc
Coil and Loop (DISEMBL)
mdsnasgfllspstfhsvynqakqddgvidlglslrtfqpeayhpsghslegygddliewpetnlqlKNSNRRFQglveedvdeeaegiqsKERWAYVKVNMDGVMVGRKICildhcgysslacqledmfvprLGLRLFQARSEFSLLYKdgeenwrtvgdvpwtEFVESVKRLRIARN
Flexible Loop (DISEMBL)
mdsnasgfLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEWPETNLQLKNSNRRFQGLVeedvdeeaegiqskerwayVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLlykdgeenwrtvgdvpwtefvesvkrlriarn
Low Complexity Region (SEG)
MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN
Disordered region (IsUnstruct)
**************FHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEWPETNLQL***********************SKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRL*****
Disordered Region (DISOPRED)
***********************************************************WP*T**********************************VKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN
Disordered Region (DISEMBL)
MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEWPETNLQLKNSNRRFQGLVEE*********QSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN
Disordered Region (DISPRO)
**************************************************EGYGDDLIEWPETNLQLKNSNRRF******************ERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	179	2.2.26 [Sep-21-2011]
Q8RYC6	191	Auxin-responsive protein	yes	no	0.972	0.910	0.518	6e-42
Q9C5X0	185	Auxin-responsive protein	no	no	0.782	0.756	0.459	1e-34
Q38830	239	Auxin-responsive protein	no	no	0.670	0.502	0.372	5e-17
Q38831	247	Auxin-responsive protein	no	no	0.536	0.388	0.432	1e-16
A2XB18	281	Auxin-responsive protein	N/A	no	0.737	0.469	0.356	2e-16
Q0DWF2	281	Auxin-responsive protein	yes	no	0.737	0.469	0.356	2e-16
Q38829	246	Auxin-responsive protein	no	no	0.748	0.544	0.322	4e-13
Q8LAL2	269	Auxin-responsive protein	no	no	0.541	0.360	0.330	1e-11
Q75GB1	257	Auxin-responsive protein	no	no	0.659	0.459	0.349	5e-11
O24408	267	Auxin-responsive protein	no	no	0.826	0.554	0.275	5e-11

>sp|Q8RYC6|IAA32_ARATH Auxin-responsive protein IAA32 OS=Arabidopsis thaliana GN=IAA32 PE=2 SV=2

 Score =  169 bits (429), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 122/187 (65%), Gaps = 13/187 (6%)

Query: 1   MDSNASG-FLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGH--SLEGYGDDL 57
           MD N    F    S FH+ Y+Q K+  GVIDLGLSLRT Q E Y P      L+GYG+ L
Sbjct: 1   MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGE-L 59

Query: 58  IEW--PETN--LQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICI 113
           I+W  P  N   QLK+ +   Q L +   + E E   S+ ++AYVKVN+DG++VGRK+C+
Sbjct: 60  IDWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGE---SRGKYAYVKVNLDGLVVGRKVCL 116

Query: 114 LDHCGYSSLACQLEDMFVPRL--GLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESV 171
           +D   Y++LA QL DMF  +   GLRLFQ  SEFSL+Y+D E  WR VGDVPW EFVESV
Sbjct: 117 VDQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVESV 176

Query: 172 KRLRIAR 178
            R+RIAR
Sbjct: 177 DRMRIAR 183

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5X0|IAA34_ARATH Auxin-responsive protein IAA34 OS=Arabidopsis thaliana GN=IAA34 PE=2 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/183 (45%), Positives = 101/183 (55%), Gaps = 43/183 (23%)

Query: 1   MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGH---SLEGYGDDL 57
           MDS+  G   +   +H  Y+Q  +  GVIDLGLSLRT Q E YH SG    S EGY    
Sbjct: 33  MDSDPLGVFPNSPKYHPYYSQTTEFGGVIDLGLSLRTIQHEIYHSSGQRYCSNEGY---- 88

Query: 58  IEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHC 117
                                             + +W YVKV MDG++VGRK+C+LDH 
Sbjct: 89  ----------------------------------RRKWGYVKVTMDGLVVGRKVCVLDHG 114

Query: 118 GYSSLACQLEDMFVPRL--GLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLR 175
            YS+LA QLEDMF  +   GLRLFQ  SEF L+Y+D E  WR  GDVPW EF+ESV+RLR
Sbjct: 115 SYSTLAHQLEDMFGMQSVSGLRLFQMESEFCLVYRDEEGLWRNAGDVPWNEFIESVERLR 174

Query: 176 IAR 178
           I R
Sbjct: 175 ITR 177

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38830|IAA12_ARATH Auxin-responsive protein IAA12 OS=Arabidopsis thaliana GN=IAA12 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 73/145 (50%), Gaps = 25/145 (17%)

Query: 57  LIEWPETNLQLKNS---NRRFQGLVEEDVDEEAEGIQSKE-------------RWAYVKV 100
           ++ WP   L   NS   N+  +    E+ D E + +++ E                +VKV
Sbjct: 70  VVGWPPIGLHRMNSLVNNQAMKAARAEEGDGEKKVVKNDELKDVSMKVNPKVQGLGFVKV 129

Query: 101 NMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLG---------LRLFQARSEFSLLYKD 151
           NMDGV +GRK+ +  H  Y +LA  LE+MF    G         LRL    S+F L Y+D
Sbjct: 130 NMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVLTYED 189

Query: 152 GEENWRTVGDVPWTEFVESVKRLRI 176
            E +W  VGDVPW  F+ SVKRLRI
Sbjct: 190 KEGDWMLVGDVPWRMFINSVKRLRI 214

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38831|IAA13_ARATH Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 15/111 (13%)

Query: 80  EDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFV----PRLG 135
           +DV ++  G   K +  ++KVNMDGV +GRK+ +  H  Y +LA  LEDMF       +G
Sbjct: 117 KDVTKKVNG---KVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVG 173

Query: 136 L--------RLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
           L        RL    SEF L Y+D E +W  VGDVPW  F+ SVKRLR+ +
Sbjct: 174 LTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMK 224

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|A2XB18|IAA10_ORYSI Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 25/157 (15%)

Query: 46  SGHSLEGYGDDLIEWP------------ETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKE 93
           SGH    +G  ++ WP            +       ++ +     E DV ++ E  + K 
Sbjct: 103 SGHPHSSFG--VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKG 160

Query: 94  RWA-YVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFV-PRLGL---------RLFQAR 142
           R A +VKVNMDG ++GRK+ +  H  Y +LA  LE MF  P +GL         +L    
Sbjct: 161 RVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDNS 220

Query: 143 SEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN 179
           +E+ L Y+D + +W  VGDVPW  FV SVKRLRI R 
Sbjct: 221 AEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRT 257

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0DWF2|IAA10_ORYSJ Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 25/157 (15%)

Query: 46  SGHSLEGYGDDLIEWP------------ETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKE 93
           SGH    +G  ++ WP            +       ++ +     E DV ++ E  + K 
Sbjct: 103 SGHPHSSFG--VVGWPPIRQFRMNSLFNQAKENTSETDTKKTATNESDVQKDKEEGEKKG 160

Query: 94  RWA-YVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFV-PRLGL---------RLFQAR 142
           R A +VKVNMDG ++GRK+ +  H  Y +LA  LE MF  P +GL         +L    
Sbjct: 161 RVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSIGLCASHNTNSLKLLDNS 220

Query: 143 SEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN 179
           +E+ L Y+D + +W  VGDVPW  FV SVKRLRI R 
Sbjct: 221 AEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRT 257

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 73/158 (46%), Gaps = 24/158 (15%)

Query: 46  SGHSLEGYGDDLIEWPETNLQLKNSN-RRFQGLVEEDVDEEAEGIQSKERW--------A 96
           +  S+      ++ WP       NS   + +    ED + E     +K R          
Sbjct: 78  TADSMAATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSM 137

Query: 97  YVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFV-PRLGLRLFQA-------------- 141
           +VKV MDG+ +GRKI +  H  Y SL+  LE+MF+ P+LG R  +               
Sbjct: 138 FVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDG 197

Query: 142 RSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN 179
            S   L Y+D E +W  VGDVPW  F+ SV+RLRI + 
Sbjct: 198 SSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKT 235

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LAL2|IAA26_ARATH Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 15/112 (13%)

Query: 83  DEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLR----- 137
           D+  + +++K+   +VK+NMDGV +GRK+ +  +  Y  L+  ++ +F   L  +     
Sbjct: 139 DDGEKQVETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISD 198

Query: 138 ----------LFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN 179
                     L   + EF+L Y+D E +   VGDVPW  FV SVKRLR+ ++
Sbjct: 199 GQGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKS 250

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GB1|IAA17_ORYSJ Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 57  LIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDH 116
           ++ WP      KN+    Q L     D EA+  Q    + YVKV+MDG    RK+ +  +
Sbjct: 117 VVGWPPIRSYRKNTMATNQ-LKSSKEDAEAKQGQG---FLYVKVSMDGAPYLRKVDLKTY 172

Query: 117 CGYSSLACQLEDMFVP----RLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVK 172
             Y  L+  LE MF+     + GL   +   E+ L Y+D + +W  VGDVPW  F  S +
Sbjct: 173 KNYKDLSTALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFANSCR 232

Query: 173 RLRIAR 178
           RLRI +
Sbjct: 233 RLRIMK 238

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O24408|IAA18_ARATH Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 30/178 (16%)

Query: 31  LGLSLRTFQPEAYHPSGHSLEGYGDDLIEWPE-----------TNLQLKNSNRRFQG--L 77
           L L+ + F P +   + H     G  ++ WP            ++ +L N +    G  L
Sbjct: 72  LSLAGKYFSPSSTKTTSHKRTAPGP-VVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTL 130

Query: 78  VEEDVDEEAEGIQSKERWA-YVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGL 136
             +  D  A+  + K +   +VK+NM GV +GRK+ +  H  Y  L+  ++ +F   L  
Sbjct: 131 KNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAA 190

Query: 137 R---------------LFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN 179
           +               L     E++L Y+D E +   VGDVPW  FV SVKRLR+ + 
Sbjct: 191 QRDFPSSIEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKT 248

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
297737772	197	unnamed protein product [Vitis vinifera]	1.0	0.908	0.648	2e-62
224108407	160	predicted protein [Populus trichocarpa]	0.815	0.912	0.629	5e-55
359472661	221	PREDICTED: auxin-responsive protein IAA3	0.826	0.669	0.591	6e-53
255570659	192	Auxin-responsive protein IAA32, putative	0.877	0.817	0.634	6e-50
365818559	188	IAA32 [Solanum lycopersicum]	0.977	0.930	0.584	5e-48
356534348	290	PREDICTED: auxin-responsive protein IAA3	0.877	0.541	0.611	1e-47
350539557	188	AUX/IAA 10 [Solanum lycopersicum] gi|338	0.977	0.930	0.584	1e-47
356574232	152	PREDICTED: auxin-responsive protein IAA3	0.765	0.901	0.555	3e-45
147787084	179	hypothetical protein VITISV_040574 [Viti	0.765	0.765	0.619	7e-42
42570633	191	auxin-responsive protein IAA32 [Arabidop	0.972	0.910	0.518	3e-40

>gi|297737772|emb|CBI26973.3| unnamed protein product [Vitis vinifera]

 Score =  243 bits (621), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/185 (64%), Positives = 142/185 (76%), Gaps = 6/185 (3%)

Query: 1   MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGH--SLEGYG--DD 56
           MDS++ GFL SP + H VY Q K+DDG+IDLGLSLRT QP+ YHP+GH  SLEGYG   +
Sbjct: 1   MDSHSQGFLWSPPSLHPVYYQTKEDDGIIDLGLSLRTLQPQVYHPTGHMGSLEGYGAYGE 60

Query: 57  LIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDH 116
            ++WP+   Q +NSN     ++ ED +EE EG+QSKERWAYVKVNMDGV++GRKIC+LD 
Sbjct: 61  PVDWPQLEAQSRNSNSGCPKVIPEDCEEETEGVQSKERWAYVKVNMDGVVIGRKICVLDL 120

Query: 117 CGYSSLACQLEDMFV--PRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRL 174
            GYSSLA QLEDMF      GLRLFQ  SEF+L YKD EENWRTVGDVPW EFV+S+KRL
Sbjct: 121 AGYSSLALQLEDMFGRDSLSGLRLFQRESEFALFYKDREENWRTVGDVPWKEFVDSIKRL 180

Query: 175 RIARN 179
           RI R 
Sbjct: 181 RIVRK 185

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108407|ref|XP_002314837.1| predicted protein [Populus trichocarpa] gi|222863877|gb|EEF01008.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 114/181 (62%), Positives = 124/181 (68%), Gaps = 35/181 (19%)

Query: 1   MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEW 60
           MDSNASGFLL+P   HS Y Q ++DDG+IDLGLSLRT +PEAYHPSGH +          
Sbjct: 1   MDSNASGFLLNPPALHSTYYQPREDDGIIDLGLSLRTLKPEAYHPSGHRMP--------- 51

Query: 61  PETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYS 120
                                    AEG+QSK+RWAYVKVNMDGV+VGRKIC+LDH GYS
Sbjct: 52  ------------------------LAEGVQSKDRWAYVKVNMDGVIVGRKICMLDHGGYS 87

Query: 121 SLACQLEDMF--VPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
           SLA QLEDMF      GLRLFQA SEF L YKD EENWRTVGDVPW EFVESVKRLRIAR
Sbjct: 88  SLALQLEDMFGRQSASGLRLFQAGSEFCLFYKDREENWRTVGDVPWKEFVESVKRLRIAR 147

Query: 179 N 179
            
Sbjct: 148 K 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472661|ref|XP_002279870.2| PREDICTED: auxin-responsive protein IAA34-like [Vitis vinifera]

 Score =  212 bits (539), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 107/181 (59%), Positives = 123/181 (67%), Gaps = 33/181 (18%)

Query: 1   MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEW 60
           MDS++ GFL SP + H VY Q K+DDG+IDLGLSLRT QP+ YHP+GH            
Sbjct: 60  MDSHSQGFLWSPPSLHPVYYQTKEDDGIIDLGLSLRTLQPQVYHPTGH------------ 107

Query: 61  PETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYS 120
                              +D +EE EG+QSKERWAYVKVNMDGV++GRKIC+LD  GYS
Sbjct: 108 -------------------KDCEEETEGVQSKERWAYVKVNMDGVVIGRKICVLDLAGYS 148

Query: 121 SLACQLEDMFV--PRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
           SLA QLEDMF      GLRLFQ  SEF+L YKD EENWRTVGDVPW EFV+S+KRLRI R
Sbjct: 149 SLALQLEDMFGRDSLSGLRLFQRESEFALFYKDREENWRTVGDVPWKEFVDSIKRLRIVR 208

Query: 179 N 179
            
Sbjct: 209 K 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570659|ref|XP_002526284.1| Auxin-responsive protein IAA32, putative [Ricinus communis] gi|223534365|gb|EEF36073.1| Auxin-responsive protein IAA32, putative [Ricinus communis]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 104/164 (63%), Positives = 125/164 (76%), Gaps = 7/164 (4%)

Query: 1   MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSL--EGYGDDLI 58
           MDS+AS F L+PS   SVY  AK+D+ +IDLGLSLRTFQP+AYHPSGH +  EGY D+L+
Sbjct: 1   MDSSASSFFLNPSALQSVYYPAKEDEDIIDLGLSLRTFQPDAYHPSGHYIGQEGY-DELM 59

Query: 59  EWPE--TNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDH 116
            WP    +  L++SN  +Q   +++ DE+AEG+QSKE WAYVKVNMDGV+VGRKICILDH
Sbjct: 60  AWPHQGNHPSLRHSNSGYQRNTQQEYDEDAEGVQSKESWAYVKVNMDGVVVGRKICILDH 119

Query: 117 CGYSSLACQLEDMF--VPRLGLRLFQARSEFSLLYKDGEENWRT 158
            GYSSLA QLEDMF      GLRLFQ  SEF L Y+D E+NWRT
Sbjct: 120 GGYSSLAVQLEDMFGIQTATGLRLFQPGSEFCLFYQDREDNWRT 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365818559|gb|AEX00368.1| IAA32 [Solanum lycopersicum]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 129/183 (70%), Gaps = 8/183 (4%)

Query: 1   MDSNASGFLLS-PSTFHSVYNQA--KQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDL 57
           MDSN+S +LL+  +T  SVY Q   K++   IDLGLSLR  QPEAY+PS H   GY D+L
Sbjct: 1   MDSNSSEYLLNHATTLPSVYYQTNNKENGNFIDLGLSLRALQPEAYYPSTHG--GY-DEL 57

Query: 58  IEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHC 117
           I+W   + QL  ++R        + D+E+EGIQSKERW YVKVNMDGV+VGRKIC+L+H 
Sbjct: 58  IDWQHLHPQLSKNSRSEYPTNFNNYDDESEGIQSKERWEYVKVNMDGVIVGRKICLLEHS 117

Query: 118 GYSSLACQLEDMFVPRL--GLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLR 175
            YSS+A QLEDMF  +   GLRLFQ  SEFSL YKD  + WR VGDVPW EF + VKRLR
Sbjct: 118 SYSSIATQLEDMFGKQNMDGLRLFQDGSEFSLFYKDRNDQWRIVGDVPWNEFADRVKRLR 177

Query: 176 IAR 178
           I R
Sbjct: 178 IMR 180

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534348|ref|XP_003535718.1| PREDICTED: auxin-responsive protein IAA32-like [Glycine max]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 99/162 (61%), Positives = 120/162 (74%), Gaps = 5/162 (3%)

Query: 1   MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSL--EGYGDDLI 58
           M+SN S FLL+ ST HSV+ Q KQDDG+IDLGLSL T Q EAYH S + +    Y +DL+
Sbjct: 1   MESNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSANCMGESVYDEDLM 60

Query: 59  EWPETNLQLKNSNRRF-QGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHC 117
           +WP +NL LKNS+    +    ++ DEE EG+QS ERWAYVKVNMDGV +GRKIC+LDH 
Sbjct: 61  DWPHSNLNLKNSSTMHSRSAHHQNFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHG 120

Query: 118 GYSSLACQLEDMFVPR--LGLRLFQARSEFSLLYKDGEENWR 157
           GYSSLA QLEDMF      GLRLFQ+ SE+SL YKD ++NWR
Sbjct: 121 GYSSLALQLEDMFGSHSVSGLRLFQSGSEYSLFYKDRQDNWR 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350539557|ref|NP_001234700.1| AUX/IAA 10 [Solanum lycopersicum] gi|338969607|gb|AEJ33648.1| AUX/IAA 16 [Solanum lycopersicum]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 128/183 (69%), Gaps = 8/183 (4%)

Query: 1   MDSNASGFLLS-PSTFHSVYNQA--KQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDL 57
           MDSN+S +LL+  +T  SVY Q   K +   IDLGLSLR  QPEAY+PS H   GY D+L
Sbjct: 1   MDSNSSEYLLNHATTLPSVYYQTNNKVNGNFIDLGLSLRALQPEAYYPSTHG--GY-DEL 57

Query: 58  IEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHC 117
           I+W   + QL  ++R        + D+E+EGIQSKERW YVKVNMDGV+VGRKIC+L+H 
Sbjct: 58  IDWQHLHPQLSKNSRSEYPTNFNNYDDESEGIQSKERWEYVKVNMDGVIVGRKICLLEHS 117

Query: 118 GYSSLACQLEDMFVPRL--GLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLR 175
            YSS+A QLEDMF  +   GLRLFQ  SEFSL YKD  + WR VGDVPW EF + VKRLR
Sbjct: 118 SYSSIATQLEDMFGKQNMDGLRLFQDGSEFSLFYKDRNDQWRIVGDVPWNEFADRVKRLR 177

Query: 176 IAR 178
           I R
Sbjct: 178 IMR 180

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574232|ref|XP_003555254.1| PREDICTED: auxin-responsive protein IAA34-like [Glycine max]

 Score =  186 bits (472), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 100/180 (55%), Positives = 114/180 (63%), Gaps = 43/180 (23%)

Query: 1   MDSNASGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGHSLEGYGDDLIEW 60
           M+SN S FLL+ ST HSV+ Q KQDDG+IDLGLSL T + EAYH SG             
Sbjct: 1   MESNTSRFLLNSSTLHSVFYQEKQDDGIIDLGLSLGTVRHEAYHSSG------------- 47

Query: 61  PETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYS 120
                                       +QS ERWAYVKVNMDGV +GRKIC+LDH GYS
Sbjct: 48  ----------------------------VQSNERWAYVKVNMDGVTIGRKICVLDHGGYS 79

Query: 121 SLACQLEDMFVPR--LGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
           SLA QLEDMF  +   GLRLFQ+ SE+SL YKD ++NWR VGDVPW EF+E VKRLRIAR
Sbjct: 80  SLALQLEDMFGSQSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIECVKRLRIAR 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787084|emb|CAN73489.1| hypothetical protein VITISV_040574 [Vitis vinifera]

 Score =  175 bits (443), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 106/142 (74%), Gaps = 5/142 (3%)

Query: 42  AYHPSGHSLEGYG---DDLIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYV 98
           ++  SG + EGYG    + ++WP+   Q +NSN     ++ ED +EE EG+QSKERWAYV
Sbjct: 25  SFEFSGEAWEGYGRHNGEPVDWPQLEAQSRNSNSGCPKVIPEDCEEETEGVQSKERWAYV 84

Query: 99  KVNMDGVMVGRKICILDHCGYSSLACQLEDMFV--PRLGLRLFQARSEFSLLYKDGEENW 156
           KVNMDGV++GRKIC+LD  GYSSLA QLEDMF      GLRLFQ  SEF+L YKD EENW
Sbjct: 85  KVNMDGVVIGRKICVLDLAGYSSLALQLEDMFGRDSLSGLRLFQRESEFALFYKDREENW 144

Query: 157 RTVGDVPWTEFVESVKRLRIAR 178
           RTVGDVPW EFV+S+KRLRI R
Sbjct: 145 RTVGDVPWKEFVDSIKRLRIVR 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570633|ref|NP_973390.1| auxin-responsive protein IAA32 [Arabidopsis thaliana] gi|46395908|sp|Q8RYC6.2|IAA32_ARATH RecName: Full=Auxin-responsive protein IAA32; AltName: Full=Indoleacetic acid-induced protein 32 gi|49616381|gb|AAT67087.1| IAA32 [Arabidopsis thaliana] gi|91806123|gb|ABE65790.1| auxin-responsive AUX/IAA family protein [Arabidopsis thaliana] gi|302807309|gb|ADL70814.1| indole-3-acetic acid inducible 32 [Arabidopsis thaliana] gi|330250321|gb|AEC05415.1| auxin-responsive protein IAA32 [Arabidopsis thaliana]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 122/187 (65%), Gaps = 13/187 (6%)

Query: 1   MDSNASG-FLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGH--SLEGYGDDL 57
           MD N    F    S FH+ Y+Q K+  GVIDLGLSLRT Q E Y P      L+GYG+ L
Sbjct: 1   MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGE-L 59

Query: 58  IEW--PETN--LQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICI 113
           I+W  P  N   QLK+ +   Q L +   + E E   S+ ++AYVKVN+DG++VGRK+C+
Sbjct: 60  IDWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGE---SRGKYAYVKVNLDGLVVGRKVCL 116

Query: 114 LDHCGYSSLACQLEDMFVPRL--GLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESV 171
           +D   Y++LA QL DMF  +   GLRLFQ  SEFSL+Y+D E  WR VGDVPW EFVESV
Sbjct: 117 VDQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVESV 176

Query: 172 KRLRIAR 178
            R+RIAR
Sbjct: 177 DRMRIAR 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	179
TAIR|locus:2038701	191	IAA32 "indole-3-acetic acid in	0.972	0.910	0.518	9.6e-41
TAIR|locus:2196184	185	IAA34 "indole-3-acetic acid in	0.916	0.886	0.425	1.5e-26
TAIR|locus:2051154	247	IAA13 "auxin-induced protein 1	0.564	0.408	0.421	1.8e-16
TAIR|locus:2197838	239	IAA12 "indole-3-acetic acid in	0.446	0.334	0.494	7.7e-16
TAIR|locus:2098023	172	IAA30 "indole-3-acetic acid in	0.547	0.569	0.428	7.1e-13
UNIPROTKB|Q652A1	140	IAA26 "Auxin-responsive protei	0.703	0.9	0.340	1.9e-12
UNIPROTKB|Q75GB1	257	IAA17 "Auxin-responsive protei	0.659	0.459	0.349	3.1e-12
TAIR|locus:2041324	175	IAA20 "indole-3-acetic acid in	0.541	0.554	0.413	3.9e-12
TAIR|locus:2180557	175	IAA28 "AT5G25890" [Arabidopsis	0.625	0.64	0.311	5e-12
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.458	0.271	0.422	7.3e-12

TAIR|locus:2038701 IAA32 "indole-3-acetic acid inducible 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 97/187 (51%), Positives = 123/187 (65%)

Query:     1 MDSNA-SGFLLSPSTFHSVYNQAKQDDGVIDLGLSLRTFQPEAYHPSGH--SLEGYGDDL 57
             MD N  + F    S FH+ Y+Q K+  GVIDLGLSLRT Q E Y P      L+GYG+ L
Sbjct:     1 MDPNTPADFFKGSSKFHTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGE-L 59

Query:    58 IEW--PETN--LQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICI 113
             I+W  P  N   QLK+ +   Q L +   + E E   S+ ++AYVKVN+DG++VGRK+C+
Sbjct:    60 IDWSQPSYNSITQLKSEDTGHQRLAQGYYNNEGE---SRGKYAYVKVNLDGLVVGRKVCL 116

Query:   114 LDHCGYSSLACQLEDMFVPRL--GLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESV 171
             +D   Y++LA QL DMF  +   GLRLFQ  SEFSL+Y+D E  WR VGDVPW EFVESV
Sbjct:   117 VDQGAYATLALQLNDMFGMQTVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVESV 176

Query:   172 KRLRIAR 178
              R+RIAR
Sbjct:   177 DRMRIAR 183

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2196184 IAA34 "indole-3-acetic acid inducible 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 74/174 (42%), Positives = 93/174 (53%)

Query:    12 PSTFHSVYNQAKQDDGVIDLGLSLRTFQ--PEAYHPSGHSLEGYGDDLIEWPETNLQLKN 69
             P   H V +  +Q D  + L     T    P    P+      Y     E+    + L  
Sbjct:     7 PHPLHLVASDKQQKDHKLILSWKKPTMDSDPLGVFPNSPKYHPYYSQTTEFGGV-IDLGL 65

Query:    70 SNRRFQGLVEEDVDEEA---EGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQL 126
             S R  Q  +     +     EG + K  W YVKV MDG++VGRK+C+LDH  YS+LA QL
Sbjct:    66 SLRTIQHEIYHSSGQRYCSNEGYRRK--WGYVKVTMDGLVVGRKVCVLDHGSYSTLAHQL 123

Query:   127 EDMFVPRL--GLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
             EDMF  +   GLRLFQ  SEF L+Y+D E  WR  GDVPW EF+ESV+RLRI R
Sbjct:   124 EDMFGMQSVSGLRLFQMESEFCLVYRDEEGLWRNAGDVPWNEFIESVERLRITR 177

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

TAIR|locus:2051154 IAA13 "auxin-induced protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 48/114 (42%), Positives = 67/114 (58%)

Query:    78 VEEDVDEEA-EGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFV---P- 132
             V++D  ++  + +  K +  ++KVNMDGV +GRK+ +  H  Y +LA  LEDMF    P 
Sbjct:   111 VKDDEPKDVTKKVNGKVQVGFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPG 170

Query:   133 RLGL--------RLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
              +GL        RL    SEF L Y+D E +W  VGDVPW  F+ SVKRLR+ +
Sbjct:   171 TVGLTSQFTKPLRLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMK 224

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2197838 IAA12 "indole-3-acetic acid inducible 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 44/89 (49%), Positives = 54/89 (60%)

Query:    97 YVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLG---------LRLFQARSEFSL 147
             +VKVNMDGV +GRK+ +  H  Y +LA  LE+MF    G         LRL    S+F L
Sbjct:   126 FVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLDGSSDFVL 185

Query:   148 LYKDGEENWRTVGDVPWTEFVESVKRLRI 176
              Y+D E +W  VGDVPW  F+ SVKRLRI
Sbjct:   186 TYEDKEGDWMLVGDVPWRMFINSVKRLRI 214

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0048364 "root development" evidence=IMP

TAIR|locus:2098023 IAA30 "indole-3-acetic acid inducible 30" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 45/105 (42%), Positives = 58/105 (55%)

Query:    77 LVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMF-VPRLG 135
             ++EE+   E   + S     YVKVNM+GV +GRKI +L   GY  L   L+ MF    L 
Sbjct:    68 IMEEEEQNECNSVGS----FYVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILW 123

Query:   136 LRLFQARSEFS--LLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
                    SE S  L Y D E +W  VGDVPW  F+ SV+RL+I+R
Sbjct:   124 AEEEDMCSEKSHVLTYADKEGDWMMVGDVPWEMFLSSVRRLKISR 168

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0010583 "response to cyclopentenone" evidence=RCA

UNIPROTKB|Q652A1 IAA26 "Auxin-responsive protein IAA26" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 45/132 (34%), Positives = 66/132 (50%)

Query:    50 LEGYGDDLIEWPETNLQLKNSNRRF--QGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMV 107
             +  YGDD +E  E  L    ++ R   +G         +  IQ+     +VKV+MDG   
Sbjct:     1 MASYGDDGVELTELTLGPPGASARRARRGRKNGHPPPSSSMIQAAY---FVKVSMDGTPY 57

Query:   108 GRKICILDHCGYSSLACQLEDMFV-PRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTE 166
              RK+ +  +  Y  L   L DMF    +GL       E +++Y+DG+ +W  VGDVPW  
Sbjct:    58 LRKVDVAAYGDYLELVEALNDMFYCSTIGLMDGYGEWEHAVVYEDGDGDWMLVGDVPWEM 117

Query:   167 FVESVKRLRIAR 178
             FV S KR+R+ R
Sbjct:   118 FVSSCKRMRVMR 129

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q75GB1 IAA17 "Auxin-responsive protein IAA17" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 44/126 (34%), Positives = 63/126 (50%)

Query:    57 LIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDH 116
             ++ WP      KN+    Q L     D EA+  Q    + YVKV+MDG    RK+ +  +
Sbjct:   117 VVGWPPIRSYRKNTMATNQ-LKSSKEDAEAKQGQG---FLYVKVSMDGAPYLRKVDLKTY 172

Query:   117 CGYSSLACQLEDMFVP----RLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVK 172
               Y  L+  LE MF+     + GL   +   E+ L Y+D + +W  VGDVPW  F  S +
Sbjct:   173 KNYKDLSTALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFANSCR 232

Query:   173 RLRIAR 178
             RLRI +
Sbjct:   233 RLRIMK 238

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2041324 IAA20 "indole-3-acetic acid inducible 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 43/104 (41%), Positives = 58/104 (55%)

Query:    78 VEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMF-VPRLGL 136
             VEE+ + E   + S     YVKVNM+GV +GRKI ++   GY  L   L+ MF    L  
Sbjct:    71 VEEEEENECNSVGS----FYVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWA 126

Query:   137 RLFQARSEFS--LLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
                   +E S  L Y D E +W  VGDVPW  F+ +V+RL+I+R
Sbjct:   127 EEEDMCNEKSHVLTYADKEGDWMMVGDVPWEMFLSTVRRLKISR 170

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;TAS

GO:0009630 "gravitropism" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2180557 IAA28 "AT5G25890" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 38/122 (31%), Positives = 70/122 (57%)

Query:    57 LIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDH 116
             ++ WP     +++S R     ++E++ ++ E  + KE   YVK+NM+GV +GRK+ +  +
Sbjct:    49 VVGWPP----VRSSRRNLTAQLKEEMKKK-ESDEEKE--LYVKINMEGVPIGRKVNLSAY 101

Query:   117 CGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRI 176
               Y  L+  ++ +F  +    L     +++L+Y+D E +   VGDVPW  FV +VKRL +
Sbjct:   102 NNYQQLSHAVDQLFSKKDSWDL---NRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHV 158

Query:   177 AR 178
              +
Sbjct:   159 LK 160

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 7.3e-12, P = 7.3e-12
 Identities = 41/97 (42%), Positives = 55/97 (56%)

Query:    97 YVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFV-PRLGLRLFQA-------------- 141
             +VKV MDG+ +GRKI +  H  Y SL+  LE+MF+ P+LG R  +               
Sbjct:   138 FVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDG 197

Query:   142 RSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIAR 178
              S   L Y+D E +W  VGDVPW  F+ SV+RLRI +
Sbjct:   198 SSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMK 234

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RYC6	IAA32_ARATH	No assigned EC number	0.5187	0.9720	0.9109	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.X.53.1 annotation not avaliable (189 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	179
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	5e-27

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  100 bits (251), Expect = 5e-27
 Identities = 38/93 (40%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 89  IQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFV-----PRLGLRLFQARS 143
           ++ K+  +YVKV+MDG    RK+ +  +  Y  L+  LE MF          L L    S
Sbjct: 84  LREKKSGSYVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIGESGLLDLLNG-S 142

Query: 144 EFSLLYKDGEENWRTVGDVPWTEFVESVKRLRI 176
           E+   Y+D + +W  VGDVPW  FVES KRLRI
Sbjct: 143 EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRI 175

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	179
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.75
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.43
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.4
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	97.36
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	97.35
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.88
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	96.71
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.45
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	96.28
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	96.07
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	95.74
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	95.31
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	93.84

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=6.2e-49  Score=327.51  Aligned_cols=113  Identities=44%  Similarity=0.705  Sum_probs=6.0

Q ss_pred             CCCCCcccCCccccccccccccccccccccchhhhhhhcCCCCcceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhc
Q 040477           52 GYGDDLIEWPETNLQLKNSNRRFQGLVEEDVDEEAEGIQSKERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFV  131 (179)
Q Consensus        52 ~~~~~vVGWPPirs~rkn~~~~~~~~~~~~~~~~~~~~qs~~~~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~  131 (179)
                      ..++++||||||+++|||....               .++...++||||+|||+||||||||++|+||++|+.+|++||+
T Consensus        81 ~~~~~~vgwpp~~s~r~n~~~~---------------~~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~  145 (215)
T PF02309_consen   81 ASKAQVVGWPPVRSFRKNSLSE---------------KQSSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFS  145 (215)
T ss_dssp             -----BTTBS----S-----------------------------------------------------------------
T ss_pred             cccccccCCCcccccccccccc---------------cccccCCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcC
Confidence            3568999999999999987631               1223358999999999999999999999999999999999994


Q ss_pred             c---c---------ccccccccCCccEEEEEeCCCCeEEcCCCChHHHHhccceeEEccC
Q 040477          132 P---R---------LGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKRLRIARN  179 (179)
Q Consensus       132 ~---~---------~~l~~~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv~svkRLrI~r~  179 (179)
                      +   .         .++.++..+++|+|||||+||||||||||||+|||++|||||||++
T Consensus       146 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~  205 (215)
T PF02309_consen  146 CFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKS  205 (215)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CCCccccccccccchhhccccCCcceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecH
Confidence            3   3         1233334677999999999999999999999999999999999984

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.75  E-value=0.0001  Score=51.88  Aligned_cols=67  Identities=25%  Similarity=0.400  Sum_probs=55.0

Q ss_pred             eeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHHHhccc
Q 040477           97 YVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEFVESVK  172 (179)
Q Consensus        97 ~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svk  172 (179)
                      -||+...|. +=|.+.+..--+|.+|...++..|+..        ...+.|.|.|.||||..+-+ .=|++.++.++
T Consensus         3 ~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~--------~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~   70 (84)
T PF00564_consen    3 RVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL--------DEDFQLKYKDEDGDLVTISSDEDLQEAIEQAK   70 (84)
T ss_dssp             EEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS--------TSSEEEEEEETTSSEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC--------CccEEEEeeCCCCCEEEeCCHHHHHHHHHHHH
Confidence            479999997 334588888889999999999999975        34589999999999998884 45777777764

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.43  E-value=0.00079  Score=47.35  Aligned_cols=65  Identities=18%  Similarity=0.332  Sum_probs=52.4

Q ss_pred             eEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHHHhccc
Q 040477           98 VKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEFVESVK  172 (179)
Q Consensus        98 VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svk  172 (179)
                      |||.-.|.  -|.+-+..--+|.+|.+.+.+.|+...        ..+.|.|+|.||||..+.+ .=|++.++.++
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~~~--------~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~   69 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGLDN--------QSFTLKYQDEDGDLVSLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCCCC--------CCeEEEEECCCCCEEEecCHHHHHHHHHHHH
Confidence            67877554  778888889999999999999998532        4589999999999997764 56777776655

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.40  E-value=0.00084  Score=50.23  Aligned_cols=68  Identities=19%  Similarity=0.303  Sum_probs=52.8

Q ss_pred             eeEEEecCceeeeeeecC---CCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCCChHHHHhccce
Q 040477           97 YVKVNMDGVMVGRKICIL---DHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESVKR  173 (179)
Q Consensus        97 ~VKV~MdG~piGRKVDL~---~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv~svkR  173 (179)
                      -|||.-+|.-+=-++++.   .--+|++|...+.+.|.+.       ...+++|.|.|.||||..+-..  +++..++.+
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~-------~~~~~~l~Y~Dedgd~V~l~~D--~DL~~a~~~   72 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLS-------PDADLSLTYTDEDGDVVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCC-------CCCcEEEEEECCCCCEEEEccH--HHHHHHHHH
Confidence            489999998444444443   4579999999999999864       3467999999999999999876  666666554

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=97.36  E-value=0.00097  Score=48.90  Aligned_cols=55  Identities=22%  Similarity=0.349  Sum_probs=45.3

Q ss_pred             eEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC
Q 040477           98 VKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD  161 (179)
Q Consensus        98 VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD  161 (179)
                      |||...|.  -+.+-|..--+|++|.+++.++|+..       ....+.|-|.|.||||..+--
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~~-------~~~~f~LkY~Ddegd~v~lts   57 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKLD-------DMSAFDLKYLDDDEEWVLLTC   57 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCCC-------CCCeeEEEEECCCCCeEEeec
Confidence            89999997  55566666669999999999999964       235799999999999998753

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=97.35  E-value=0.0011  Score=46.24  Aligned_cols=65  Identities=22%  Similarity=0.374  Sum_probs=52.1

Q ss_pred             eEEEecCceeeeeeecC-CCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHHHhccc
Q 040477           98 VKVNMDGVMVGRKICIL-DHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEFVESVK  172 (179)
Q Consensus        98 VKV~MdG~piGRKVDL~-~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~svk  172 (179)
                      |||+-.|.  -|.+-+. .--+|++|...|.+.|+...        ..+.+.|.|.||||..+.+ .=|++-++.++
T Consensus         3 vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~~--------~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~   69 (81)
T cd05992           3 VKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLDA--------VSFKLKYPDEDGDLVTISSDEDLEEAIEEAR   69 (81)
T ss_pred             EEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCCC--------CcEEEEeeCCCCCEEEeCCHHHHHHHHHHHh
Confidence            78888876  4555555 88999999999999998652        4589999999999999987 56676666655

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.88  E-value=0.0052  Score=45.50  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=49.8

Q ss_pred             eEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcC-CCChHHHHh
Q 040477           98 VKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVG-DVPWTEFVE  169 (179)
Q Consensus        98 VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVG-DvPW~~Fv~  169 (179)
                      |||.-.|.-+--+++-+..-+|.+|.+++.++|+..          .+.|.|-|.||||.++- |.=-++.+.
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~----------~f~lKYlDde~e~v~lssd~eLeE~~r   65 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN----------DIQIKYVDEENEEVSVNSQGEYEEALK   65 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC----------cceeEEEcCCCCEEEEEchhhHHHHHH
Confidence            789999987777777777889999999999999976          38999999999998874 333344433

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.71  E-value=0.011  Score=43.86  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             eEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcC-CCChHHHHhccc---e
Q 040477           98 VKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVG-DVPWTEFVESVK---R  173 (179)
Q Consensus        98 VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVG-DvPW~~Fv~svk---R  173 (179)
                      ||..-|..--=-.+|.....+|+++++-|++||.+..        ..+.|-|.|.+||.+-+- |+-+..=+++++   |
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~--------~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~plLR   74 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPN--------VDFLIGYTDPHGDLLPINNDDNFLKALSSANPLLR   74 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCC--------CcEEEEEeCCCCCEecccCcHHHHHHHHcCCCceE
Confidence            6666666622224555566999999999999998753        459999999999999887 445555455666   5


Q ss_pred             eEEcc
Q 040477          174 LRIAR  178 (179)
Q Consensus       174 LrI~r  178 (179)
                      |.|-|
T Consensus        75 l~iqr   79 (80)
T cd06403          75 IFIQR   79 (80)
T ss_pred             EEEEc
Confidence            55544

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.45  E-value=0.025  Score=42.06  Aligned_cols=73  Identities=19%  Similarity=0.303  Sum_probs=52.2

Q ss_pred             eEEEecCceeeeeeecCCC-CChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC---ChHHHHhccce
Q 040477           98 VKVNMDGVMVGRKICILDH-CGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV---PWTEFVESVKR  173 (179)
Q Consensus        98 VKV~MdG~piGRKVDL~~~-~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv---PW~~Fv~svkR  173 (179)
                      +|+.-.|.  =|++=+..- -+|.+|...+.+.|...-     .....+.+.|.|.|||+.-+.+.   -|..=+...+|
T Consensus         3 iK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~~-----~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~~~~   75 (81)
T cd06401           3 LKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGKL-----GSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSRILK   75 (81)
T ss_pred             EEEEeCCe--EEEEeccCccccHHHHHHHHHHHhcccc-----CCcccEEEEEECCCCCEEEeccHHHHHHHHhcCcceE
Confidence            67777665  456555543 399999999999999531     23457999999999999999875   44433444556


Q ss_pred             eEEc
Q 040477          174 LRIA  177 (179)
Q Consensus       174 LrI~  177 (179)
                      |+|.
T Consensus        76 l~~~   79 (81)
T cd06401          76 LTLF   79 (81)
T ss_pred             EEEe
Confidence            6664

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=96.28  E-value=0.011  Score=44.13  Aligned_cols=51  Identities=14%  Similarity=0.026  Sum_probs=39.8

Q ss_pred             ceeeeeeec--CCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcC
Q 040477          105 VMVGRKICI--LDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVG  160 (179)
Q Consensus       105 ~piGRKVDL--~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVG  160 (179)
                      +|-||.+=+  ....|+.+|.+++.+-|+....     ....+.|.|.|.||||.++-
T Consensus         7 ~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~-----~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           7 DPKGRVHRFRLRPSESLEELRTLISQRLGDDDF-----ETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCCEEEEEecCCCCHHHHHHHHHHHhCCccc-----cCCcccEEEEcCCCCEEEEe
Confidence            345665544  4478999999999999987642     13569999999999999875

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=96.07  E-value=0.025  Score=42.19  Aligned_cols=56  Identities=21%  Similarity=0.223  Sum_probs=45.4

Q ss_pred             eEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC
Q 040477           98 VKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV  162 (179)
Q Consensus        98 VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv  162 (179)
                      +|++-.|...--.+|.  .-+|++|.+.+.+||...       .+..+++.|.|.|||.--+...
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~~-------~~q~ft~kw~DEEGDp~tiSS~   58 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRFH-------NDQPFTLKWIDEEGDPCTISSQ   58 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCCC-------CCCcEEEEEECCCCCceeecCH
Confidence            7899999855555665  778999999999999974       2346999999999998777643

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=95.74  E-value=0.04  Score=41.06  Aligned_cols=63  Identities=21%  Similarity=0.285  Sum_probs=50.6

Q ss_pred             eEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHHHhc
Q 040477           98 VKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEFVES  170 (179)
Q Consensus        98 VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~s  170 (179)
                      -||.-+|.  .|++-...-=+|.+|.+.|+.+|.+..       . .+.|+|.|.|||..-+-| .=-++|.+-
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp~-------~-~~~vtYiDeD~D~ITlssd~eL~d~~~~   66 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLPE-------I-KVGVTYIDNDNDEITLSSNKELQDFYRL   66 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCCh-------h-HeEEEEEcCCCCEEEecchHHHHHHHHh
Confidence            48888887  899999999999999999999999752       1 279999999999886654 445555443

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=95.31  E-value=0.11  Score=38.83  Aligned_cols=59  Identities=20%  Similarity=0.198  Sum_probs=43.6

Q ss_pred             eeEEEecC---ceeeeee--ecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC
Q 040477           97 YVKVNMDG---VMVGRKI--CILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV  162 (179)
Q Consensus        97 ~VKV~MdG---~piGRKV--DL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv  162 (179)
                      .||.+..|   .+==|++  |=....+|++|...+.++|...       .+..++|.|.|.|||..-+...
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l-------~~~~ftlky~DeeGDlvtIssd   65 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSL-------RGKNFQLFWKDEEGDLVAFSSD   65 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHcccc-------CCCcEEEEEECCCCCEEeecCH
Confidence            46666665   2233444  4466679999999999999753       2356999999999999988764

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=93.84  E-value=0.27  Score=36.76  Aligned_cols=55  Identities=25%  Similarity=0.334  Sum_probs=46.5

Q ss_pred             ceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC
Q 040477           96 AYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV  162 (179)
Q Consensus        96 ~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv  162 (179)
                      .=|||+-.|.  .|-|-+..-=+|++|...+.++|+..         ..++|-|.|. ||..-+++.
T Consensus         3 ikVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~~---------~~~~iKykDE-GD~iti~sq   57 (86)
T cd06408           3 IRVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGFK---------RRLKIKMKDD-GDMITMGDQ   57 (86)
T ss_pred             EEEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCCC---------CceEEEEEcC-CCCccccCH
Confidence            3589999998  67777777778999999999999974         2589999999 999988874

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	179
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	96.8
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	96.33
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	95.24
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	94.46
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	92.93
1pqs_A	77	Cell division control protein 24; alpha and beta p	90.39
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	88.79
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	86.97
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	85.66
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	83.9

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=96.80  E-value=0.0092  Score=43.59  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=56.6

Q ss_pred             CcceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCCChHHHH---hc
Q 040477           94 RWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFV---ES  170 (179)
Q Consensus        94 ~~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv---~s  170 (179)
                      +..-||..-++.--=-.+|-....+|++|..-|+++|.+.        ...+++.|.|.+||++-+-++  ++|.   .+
T Consensus         5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~--------~~~f~i~Y~D~dGDLlpInnD--dnl~~Al~~   74 (86)
T 1wmh_B            5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP--------GLDVLLGYTDAHGDLLPLTND--DSLHRALAS   74 (86)
T ss_dssp             CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT--------TCCCEEEEECTTSCEEECCSH--HHHHHHTTS
T ss_pred             CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC--------CCCEEEEEECCCCCEeeecCH--HHHHHHHHh
Confidence            4567888888874333566667789999999999999842        345999999999999998876  5554   45


Q ss_pred             cc---eeEEcc
Q 040477          171 VK---RLRIAR  178 (179)
Q Consensus       171 vk---RLrI~r  178 (179)
                      +|   ||.|-|
T Consensus        75 a~plLRl~Iqr   85 (86)
T 1wmh_B           75 GPPPLRLLVQK   85 (86)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCcEEEEEEc
Confidence            55   555554

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=96.33  E-value=0.014  Score=42.66  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=46.7

Q ss_pred             CcceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC
Q 040477           94 RWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV  162 (179)
Q Consensus        94 ~~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv  162 (179)
                      +..=||++-.|.-+  .+-+..--+|++|...|.++|...       .+..+++.|.|.|||+.-+-..
T Consensus         5 ~~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~-------~~~~f~lky~DEeGD~itisSd   64 (89)
T 1vd2_A            5 SQVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFD-------NEQLFTMKWIDEEGDPCTVSSQ   64 (89)
T ss_dssp             SCEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCC-------SSCCEEEEECCSSSCCEECCSH
T ss_pred             CeEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCC-------CCCeEEEEEECCCCCcccccCH
Confidence            34678999999844  444445669999999999999964       2456899999999999876543

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=95.24  E-value=0.046  Score=40.78  Aligned_cols=61  Identities=13%  Similarity=0.075  Sum_probs=45.2

Q ss_pred             cceeEEEecC----ceeeeeeecCC-----------CCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEc
Q 040477           95 WAYVKVNMDG----VMVGRKICILD-----------HCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTV  159 (179)
Q Consensus        95 ~~~VKV~MdG----~piGRKVDL~~-----------~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLV  159 (179)
                      ..-||++..|    ..-=|++-|..           ..+|++|...+.++|...       .+..|.|.|.|.|||+.-+
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l-------~~~~f~l~Y~DedGDlIti   77 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPAL-------RPGGFQAHYRAERGDLVAF   77 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-------CSSCEEEEEECTTCCEEEE
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHcccc-------CCCcEEEEEECCCCCEEEe
Confidence            4678888865    22446555532           248999999999999843       2346999999999999988


Q ss_pred             CCC
Q 040477          160 GDV  162 (179)
Q Consensus       160 GDv  162 (179)
                      .+.
T Consensus        78 SsD   80 (102)
T 2kkc_A           78 SSD   80 (102)
T ss_dssp             CSH
T ss_pred             cCH
Confidence            865

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=94.46  E-value=0.11  Score=39.87  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             CcceeEEEecC----ceeeeeeecC-----------CCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEE
Q 040477           94 RWAYVKVNMDG----VMVGRKICIL-----------DHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRT  158 (179)
Q Consensus        94 ~~~~VKV~MdG----~piGRKVDL~-----------~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mL  158 (179)
                      ...-||++..|    ..-=|++-|.           .-.+|++|...+.++|...       .+..|+|.|.|.|||+.-
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L-------~~~~f~l~YkDEdGDlIt   91 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPAL-------RPGGFQAHYRAERGDLVA   91 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTS-------CSSCEEEEEECTTCCEEE
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHcccc-------CCCcEEEEEECCCCCEEE
Confidence            46889999974    1234655554           1359999999999999743       234699999999999998


Q ss_pred             cCCC
Q 040477          159 VGDV  162 (179)
Q Consensus       159 VGDv  162 (179)
                      +-..
T Consensus        92 ISsD   95 (117)
T 2ktr_A           92 FSSD   95 (117)
T ss_dssp             ECSH
T ss_pred             ecCH
Confidence            8765

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=92.93  E-value=0.35  Score=35.94  Aligned_cols=74  Identities=8%  Similarity=0.125  Sum_probs=54.1

Q ss_pred             cceeEEEecCc------eeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHH
Q 040477           95 WAYVKVNMDGV------MVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEF  167 (179)
Q Consensus        95 ~~~VKV~MdG~------piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~F  167 (179)
                      +.-|||+-+..      .=.|.|=+..-=+|++|...+.+-|+....- +  -....+|-|+|.|||+...++ .=|++=
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~-~--i~~~~klkYkDEdGD~Vtl~sddDl~~A   81 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNN-N--ISPITKIKYQDEDGDFVVLGSDEDWNVA   81 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSS-C--CCCCCCEEEECSSSCEEEECSHHHHHHH
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccc-c--ccceeEEEEEcCCCCEEEEcCHHHHHHH
Confidence            35788887732      1236777778889999999999999864110 0  023478999999999988885 578887


Q ss_pred             Hhcc
Q 040477          168 VESV  171 (179)
Q Consensus       168 v~sv  171 (179)
                      +.++
T Consensus        82 ~e~~   85 (98)
T 1q1o_A           82 KEML   85 (98)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7765

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=90.39  E-value=0.47  Score=33.56  Aligned_cols=58  Identities=10%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             eecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHHHhcc
Q 040477          111 ICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEFVESV  171 (179)
Q Consensus       111 VDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~sv  171 (179)
                      |=+..-=+|++|...+.+-|..... .  ......+|-|+|.|||+...++ .=|++=+.++
T Consensus         6 i~V~~~i~f~~L~~kI~~kl~~~~~-~--~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~   64 (77)
T 1pqs_A            6 LLVEKVWNFDDLIMAINSKISNTHN-N--NISPITKIKYQDEDGDFVVLGSDEDWNVAKEML   64 (77)
T ss_dssp             EECTTCCCSHHHHHHHHHHTTTTTS-S--CSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHccccc-c--cccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence            3344556799999999999996411 0  0135689999999999987775 5788877765

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=88.79  E-value=2.6  Score=30.17  Aligned_cols=70  Identities=16%  Similarity=0.128  Sum_probs=55.2

Q ss_pred             ceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEe-CCCCeEEcCCCChHHHHhccc--
Q 040477           96 AYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKD-GEENWRTVGDVPWTEFVESVK--  172 (179)
Q Consensus        96 ~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD-~eGD~mLVGDvPW~~Fv~svk--  172 (179)
                      .=|||+-.   +.-.|....=-+|.+|...|.+-+....        .+-+|-|.| .+|.|++.+|.-++.=...|+  
T Consensus         6 ~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~--------~~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~   74 (83)
T 1oey_A            6 YTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRL--------EHTKLSYRPRDSNELVPLSEDSMKDAWGQVKNY   74 (83)
T ss_dssp             EEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCG--------GGCCEEECCTTCSSCEECCTTTHHHHHTTCBTT
T ss_pred             EEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCc--------ceeEEEeeCCCCCCeeccChHHHHHHHHhccCC
Confidence            45677766   6778888888999999999999887632        235889999 688888999999998887754  


Q ss_pred             eeEE
Q 040477          173 RLRI  176 (179)
Q Consensus       173 RLrI  176 (179)
                      ||++
T Consensus        75 ~LtL   78 (83)
T 1oey_A           75 CLTL   78 (83)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            5554

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=86.97  E-value=0.98  Score=34.13  Aligned_cols=41  Identities=15%  Similarity=0.079  Sum_probs=34.3

Q ss_pred             ecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC
Q 040477          112 CILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV  162 (179)
Q Consensus       112 DL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv  162 (179)
                      ||...-.|.+|..-..+-|..+          +-.|-|.|.|||+.-+=|.
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~~----------DIaLNYrD~eGDLIrildd   68 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQRE----------DIALNYRDAEGDLVRLLSD   68 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCCS----------SEEEEEECTTSCEEECCSH
T ss_pred             ccccCCCHHHHHHHHHHHhccc----------ceeeeeecCCCCEEEEcch
Confidence            5778889999999999999843          3689999999999876553

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=85.66  E-value=2.8  Score=30.53  Aligned_cols=55  Identities=9%  Similarity=0.154  Sum_probs=42.9

Q ss_pred             ceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcC
Q 040477           96 AYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVG  160 (179)
Q Consensus        96 ~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVG  160 (179)
                      .=+||.-.|...=--|.-..--++++|-..+..+|+..          .++|.|.|.|||-.-|=
T Consensus         7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~----------~~~ikY~DEenD~v~i~   61 (87)
T 2bkf_A            7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN----------TIQIKYLDEENEEVSIN   61 (87)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS----------SEEEEEECTTSCEEEEC
T ss_pred             EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC----------ceEEEEEcCCCCEEEEe
Confidence            45789999984333354444789999999999999864          37999999999988764

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=83.90  E-value=2.9  Score=31.24  Aligned_cols=65  Identities=11%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             cceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCCChHHHHhcc
Q 040477           95 WAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDVPWTEFVESV  171 (179)
Q Consensus        95 ~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDvPW~~Fv~sv  171 (179)
                      ..=+||.-.|...=--|.-..--.+++|-..+..+|+..          .++|.|.|.|||-.-|=  -+.+|-+.+
T Consensus        14 ~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~----------~~~IkY~DEenD~V~i~--Sq~E~eEAl   78 (101)
T 1wj6_A           14 QVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN----------TIQIKYLDEENEEVSIN--SQGEYEEAL   78 (101)
T ss_dssp             CEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS----------SBCCEEECTTSCEECCC--SHHHHHHHH
T ss_pred             cEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC----------ceEEEEecCCCCEEEEe--cHHHHHHHH
Confidence            356899999984433465555789999999999999964          36999999999998774  356655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	179
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	97.15
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	96.41
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	91.53
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	80.1

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00056  Score=48.27  Aligned_cols=66  Identities=9%  Similarity=0.150  Sum_probs=52.1

Q ss_pred             ceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcC-CCChHHHHhcc
Q 040477           96 AYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVG-DVPWTEFVESV  171 (179)
Q Consensus        96 ~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVG-DvPW~~Fv~sv  171 (179)
                      .=|||...|..+=-+|-+..-.+|.+|..+|++.|+..          .+.|.|.|.||||.++. |.=.++....+
T Consensus         5 vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l~----------~~~lkY~Ddd~e~v~l~~d~dl~E~~~~a   71 (85)
T d2bkfa1           5 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN----------TIQIKYLDEENEEVSINSQGEYEEALKMA   71 (85)
T ss_dssp             EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS----------SEEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred             EEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCcc----------cceEEEEcCCCCEEEEecHHHHHHHHHHH
Confidence            45899999986666777778899999999999999863          26899999999998876 44455554433

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.0022  Score=44.27  Aligned_cols=72  Identities=8%  Similarity=0.076  Sum_probs=52.7

Q ss_pred             CCcceeEEEecCceeeeeeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC-CChHHHHhcc
Q 040477           93 ERWAYVKVNMDGVMVGRKICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD-VPWTEFVESV  171 (179)
Q Consensus        93 ~~~~~VKV~MdG~piGRKVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD-vPW~~Fv~sv  171 (179)
                      .+..=|||+..+.  -|.+-|..=-+|.+|..++.+.|+..          .++|-|+|.||||..+-+ .=+++=++..
T Consensus        10 ~~~ikVKv~~~~D--~~~~~l~~~it~~dL~~kI~~rf~~~----------~~~lkY~Dedgd~v~i~sD~Dl~~ai~~~   77 (85)
T d1ip9a_          10 LKTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDTD----------NFKLQTKLFDGSGEEIKTDSQVSNIIQAK   77 (85)
T ss_dssp             CCCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTSS----------CEEEEECCSSSCCSCCCSHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCc--EEEEEeCCCCCHHHHHHHHHHHhCCC----------ceEEEEEcCCCCEEEEeCHHHHHHHHHhc
Confidence            3456789999888  45555566688999999999999742          379999999999987654 4455555544


Q ss_pred             ceeEE
Q 040477          172 KRLRI  176 (179)
Q Consensus       172 kRLrI  176 (179)
                      .||.+
T Consensus        78 ~kl~v   82 (85)
T d1ip9a_          78 LKISV   82 (85)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            45443

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.5  Score=32.51  Aligned_cols=61  Identities=13%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             eeecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCCC-ChHHHHhccc---eeEEcc
Q 040477          110 KICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGDV-PWTEFVESVK---RLRIAR  178 (179)
Q Consensus       110 KVDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGDv-PW~~Fv~svk---RLrI~r  178 (179)
                      .+|....++|++.+.-|++|-.+.        +.++.|.|.|..||.+-+-.+ -+.-=+.+++   ||-|-|
T Consensus        17 sl~r~~~~~fe~F~~Lle~~H~l~--------~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~PlLRi~iQr   81 (82)
T d1wmhb_          17 ALPRASVSGFQEFSRLLRAVHQIP--------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGPPPLRLLVQK   81 (82)
T ss_dssp             EEEGGGCCCHHHHHHHHHHHTTCT--------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSSSCEEEEEEC
T ss_pred             eeccccccCHHHHHHHHHHHcCCC--------CCcEEEEEecCCCCcccccCchHHHHHHHhcCCceeEeEEc
Confidence            678888999999999999998763        346899999999999998755 3333344555   555544

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.10  E-value=1.3  Score=31.47  Aligned_cols=41  Identities=15%  Similarity=0.080  Sum_probs=34.1

Q ss_pred             eecCCCCChHHHHHHHHHHhcccccccccccCCccEEEEEeCCCCeEEcCC
Q 040477          111 ICILDHCGYSSLACQLEDMFVPRLGLRLFQARSEFSLLYKDGEENWRTVGD  161 (179)
Q Consensus       111 VDL~~~~sY~eL~~~Le~MF~~~~~l~~~~~~~~~~l~YeD~eGD~mLVGD  161 (179)
                      =||+..-+|.+|..-..+-|...          +-+|-|.|.|||..-+=|
T Consensus        25 edl~~~P~ykdLl~lmr~~f~~~----------dIaLNYrD~eGDLIRlld   65 (105)
T d1oeyj_          25 EDLSSTPLLKDLLELTRREFQRE----------DIALNYRDAEGDLVRLLS   65 (105)
T ss_dssp             SCTTCCCCHHHHHHHHHHHHCCS----------SEEEEEECTTSCEEECCS
T ss_pred             cccccCccHHHHHHHHHHHhccc----------eeEeeeecCCCCEEEEcc
Confidence            36888999999999999999854          368999999999876543