Citrus Sinensis ID: 040491
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | ||||||
| 255557421 | 570 | conserved hypothetical protein [Ricinus | 0.975 | 0.850 | 0.622 | 0.0 | |
| 357448349 | 542 | hypothetical protein MTR_2g028770 [Medic | 0.979 | 0.898 | 0.608 | 1e-179 | |
| 356555837 | 555 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.863 | 0.609 | 1e-179 | |
| 356499356 | 542 | PREDICTED: uncharacterized protein LOC10 | 0.935 | 0.857 | 0.645 | 1e-178 | |
| 297740638 | 534 | unnamed protein product [Vitis vinifera] | 0.957 | 0.891 | 0.610 | 1e-175 | |
| 357494297 | 593 | hypothetical protein MTR_5g091570 [Medic | 0.959 | 0.804 | 0.605 | 1e-174 | |
| 359483826 | 570 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.840 | 0.586 | 1e-173 | |
| 449459338 | 551 | PREDICTED: uncharacterized protein LOC10 | 0.921 | 0.831 | 0.607 | 1e-171 | |
| 224116742 | 470 | predicted protein [Populus trichocarpa] | 0.796 | 0.842 | 0.697 | 1e-170 | |
| 186479044 | 540 | Magnesium transporter CorA-like family p | 0.909 | 0.837 | 0.594 | 1e-167 |
| >gi|255557421|ref|XP_002519741.1| conserved hypothetical protein [Ricinus communis] gi|223541158|gb|EEF42714.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/557 (62%), Positives = 398/557 (71%), Gaps = 72/557 (12%)
Query: 11 FVCNNGMKKPETQKIHLSRDSLLGGDLWTDGLICAFEFVR--GHKKMVKSKPGSK----- 63
F+ NN KKPET K H SRD + G +LWTDGLICAFEFVR G ++ + SK SK
Sbjct: 14 FLQNNKTKKPETHKNHNSRDVISGNELWTDGLICAFEFVRVRGSRRSINSKSVSKTPSKQ 73
Query: 64 --------------------------VEPSLTPKVNGF-SLSKSSPVIESAITIKDKENF 96
+EPS + G ++S I+ + + E F
Sbjct: 74 LDGEQTKYQVQATGLSESPRHDRNKLLEPSSLSEFRGNQNVSSGDSRIDQSGQYRAIERF 133
Query: 97 LPRSYWIPIGWDRISQLVQSVQIDAGWNEQPFDFPSEEDDVTVADLAAPYWERPVGPTW- 155
S+W+PIGW RIS LVQ+VQ D W Q D EEDD+TVA+LAAPYWERP GP W
Sbjct: 134 -DDSHWVPIGWARISDLVQTVQTDFSWTTQLLDLMDEEDDLTVAELAAPYWERPAGPIWW 192
Query: 156 C--------------NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLG 201
C NAQWLHPAISVALRDES+LIS+RMKHLLYEVPVRVAGGLLFELLG
Sbjct: 193 CHVSANHPSVQSWLNNAQWLHPAISVALRDESRLISERMKHLLYEVPVRVAGGLLFELLG 252
Query: 202 QSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGSTSNINVLGIMEVQELLAAGGSNIPR 261
QSAGDP V+EDD+ IVLRSWQAQ L+T+LH+KG+ S +NVLGI EV ELL+ GG N PR
Sbjct: 253 QSAGDPFVEEDDIPIVLRSWQAQNFLITSLHIKGNVSRVNVLGITEVLELLSGGGYNTPR 312
Query: 262 TIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQEIRRLS 321
T++EV+A LACRL +WDDRLFRKSIFGAADEIELKFMNRR HEDM+L +ILNQEIRRLS
Sbjct: 313 TVHEVIALLACRLTRWDDRLFRKSIFGAADEIELKFMNRRNHEDMNLFSVILNQEIRRLS 372
Query: 322 TQVIRVKWSLHARDEI----------------------STREMIEEQEAVRGRLFTIQDV 359
QVIRVKWSLHAR+EI STREM+EEQEAVRGRLFTIQDV
Sbjct: 373 RQVIRVKWSLHAREEIVFELLHHLRGNAARILLEEIRKSTREMMEEQEAVRGRLFTIQDV 432
Query: 360 MQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGI 419
MQSTVRAWLQDRSL VTHNL VFGGCGL+LSIITGLFGINVDGIPGA +PYAF +F+ I
Sbjct: 433 MQSTVRAWLQDRSLRVTHNLAVFGGCGLVLSIITGLFGINVDGIPGAENTPYAFGVFTAI 492
Query: 420 LFLLGVVLIAIGLLYLGLKKPILDEHVEVRKLELEGLVKMFEQEAESHAQVRKSVPHSTL 479
L +GVVLIA+GLLYLGLK+PI ++ VEVRKLEL+ LVKMF+ EAE+HAQVRK+V + L
Sbjct: 493 LLFIGVVLIAVGLLYLGLKQPITEKRVEVRKLELQELVKMFQHEAETHAQVRKNVHRTNL 552
Query: 480 PPTAADLLPDGASYVLI 496
PT+ D L D YVLI
Sbjct: 553 TPTSGDGLTDDVDYVLI 569
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357448349|ref|XP_003594450.1| hypothetical protein MTR_2g028770 [Medicago truncatula] gi|355483498|gb|AES64701.1| hypothetical protein MTR_2g028770 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356555837|ref|XP_003546236.1| PREDICTED: uncharacterized protein LOC100796976 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356499356|ref|XP_003518507.1| PREDICTED: uncharacterized protein LOC100789115 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297740638|emb|CBI30820.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357494297|ref|XP_003617437.1| hypothetical protein MTR_5g091570 [Medicago truncatula] gi|355518772|gb|AET00396.1| hypothetical protein MTR_5g091570 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|359483826|ref|XP_002272002.2| PREDICTED: uncharacterized protein LOC100267497 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449459338|ref|XP_004147403.1| PREDICTED: uncharacterized protein LOC101208256 [Cucumis sativus] gi|449516982|ref|XP_004165525.1| PREDICTED: uncharacterized LOC101208256 [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224116742|ref|XP_002331866.1| predicted protein [Populus trichocarpa] gi|222875384|gb|EEF12515.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|186479044|ref|NP_174275.2| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|186479046|ref|NP_001117384.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|332193013|gb|AEE31134.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] gi|332193014|gb|AEE31135.1| Magnesium transporter CorA-like family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 497 | ||||||
| TAIR|locus:2019292 | 540 | AT1G29820 [Arabidopsis thalian | 0.665 | 0.612 | 0.539 | 1.3e-147 | |
| TAIR|locus:2045575 | 501 | AT2G42950 [Arabidopsis thalian | 0.627 | 0.622 | 0.595 | 1.4e-142 | |
| TAIR|locus:2019282 | 568 | AT1G29830 [Arabidopsis thalian | 0.533 | 0.466 | 0.612 | 7.1e-141 | |
| TIGR_CMR|SPO_A0218 | 322 | SPO_A0218 "magnesium transport | 0.414 | 0.639 | 0.267 | 7.5e-05 |
| TAIR|locus:2019292 AT1G29820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 904 (323.3 bits), Expect = 1.3e-147, Sum P(3) = 1.3e-147
Identities = 197/365 (53%), Positives = 252/365 (69%)
Query: 24 KIHLSRDSLLGGDL-WTDGLICAFEFVRGHKKMVKSKPGSKVEPSLTPKVNGFSLSKSSP 82
K H+ L G L DG I + F GH V S P V+ + V+ K +
Sbjct: 48 KKHVDSKQLEKGALKQEDGPI-SHSFP-GHNPFVDSSP---VDDLRSRSVSSLDF-KEAH 101
Query: 83 VIESAITIKDKENFLPRSYWIPIGWDRISQLVQSVQIDAGWNEQPFDFPSEEDDVTVADL 142
++ S ++ E S+W+PIGW RI++LVQ VQ++A W + +E+DV V DL
Sbjct: 102 LLPSG-HVERYEG----SHWVPIGWARITELVQMVQVNAEWPN--LELIDDEEDVPVTDL 154
Query: 143 AAPYWERPVGPTW-CN--------------AQWLHPAISVALRDESKLISDRMKHLLYEV 187
AAPYWERP GPTW C+ A WLHPAIS+ALRDESKLIS+RM+HLLYEV
Sbjct: 155 AAPYWERPGGPTWWCHLSAGNSFVEGWLRSATWLHPAISLALRDESKLISERMRHLLYEV 214
Query: 188 PVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGSTSNINVLGIME 247
PVRVAGGLLFELLGQS GDP++ EDDV +V RSWQA+ L++ +H+KG+ +N NVLGI E
Sbjct: 215 PVRVAGGLLFELLGQSVGDPVISEDDVPVVFRSWQAKNFLVSVMHIKGNVTNTNVLGITE 274
Query: 248 VQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMH 307
V+ELL AGG N+PRT++EV+AHLACRL++WDDRLFRKSIFGAADEIELKFMNRR +ED++
Sbjct: 275 VEELLYAGGYNVPRTVHEVIAHLACRLSRWDDRLFRKSIFGAADEIELKFMNRRNYEDLN 334
Query: 308 LVGIILNQEIRRLSTQVIRVKWSLHARDEISTREMIEEQEAVRGRLFT-IQDVMQSTVRA 366
L IILNQEIR+LS QVIRVKWSLHAR+EI + E + +RG + + D ++ R
Sbjct: 335 LFSIILNQEIRKLSRQVIRVKWSLHAREEI----IFELLQHLRGNIARHLLDGLRKNTRE 390
Query: 367 WLQDR 371
L+++
Sbjct: 391 MLEEQ 395
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| TAIR|locus:2045575 AT2G42950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2019282 AT1G29830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SPO_A0218 SPO_A0218 "magnesium transporter, CorA family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_scaffold_204000004 | hypothetical protein (470 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 497 | |||
| cd12833 | 290 | cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ | 1e-16 | |
| COG0598 | 322 | COG0598, CorA, Mg2+ and Co2+ transporters [Inorgan | 2e-06 | |
| pfam01544 | 291 | pfam01544, CorA, CorA-like Mg2+ transporter protei | 5e-06 | |
| PRK09546 | 324 | PRK09546, zntB, zinc transporter; Reviewed | 1e-05 | |
| cd12824 | 290 | cd12824, ZntB-like, Salmonella typhimurium Zn2+ tr | 7e-05 | |
| cd12827 | 289 | cd12827, EcCorA_ZntB-like_u2, uncharacterized bact | 5e-04 | |
| cd12834 | 290 | cd12834, ZntB_u1, Uncharacterized bacterial subgro | 0.003 | |
| cd12829 | 305 | cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1 | 0.004 |
| >gnl|CDD|213367 cd12833, ZntB-like_1, Salmonella typhimurium Zn2+ transporter ZntB-like subgroup | Back alignment and domain information |
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Score = 80.2 bits (199), Expect = 1e-16
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 59/229 (25%)
Query: 236 STSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRL--------AQWDDRLFRKSIF 287
ST +L + +++E L AG P++ + +A LA RL + +DRL
Sbjct: 80 STRRRRLLAVDDIREALEAGKG--PKSPGDFLAALAERLTDRMEDVIDELEDRL------ 131
Query: 288 GAADEIELKFMNRRTHEDMHLVGIILNQEIRRLSTQVIRVK------------------- 328
DE+E + + L E+ L Q I ++
Sbjct: 132 ---DELEERVLEEED--------EELRGELAELRRQAIALRRYLAPQRDALERLAREDLP 180
Query: 329 WSLHARDEISTRE-------MIEEQEAVRGRLFTIQDVMQSTVRAWLQDRSLTVTHNLGV 381
W L D + RE IE+ +A+R R +Q+ + + + R ++ +
Sbjct: 181 W-LSDDDRLRLREAADRLTRYIEDLDAIRERAAVLQEELTNRRAEQMNRRMYVLSIVAAI 239
Query: 382 FGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAI 430
F L L +TGL GINV GIPGA +P+AF +F G+L +L V L+ +
Sbjct: 240 F----LPLGFLTGLLGINVGGIPGA-ENPWAFWIFCGLLVVLAVGLLLL 283
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A bacterial subgroup belonging to the Escherichia coli CorA-Salmonella typhimurium ZntB_like family (EcCorA_ZntB-like) of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Zn2+ transporter Salmonella typhimurium ZntB which mediates the efflux of Zn2+ (and Cd2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, which occur in proteins belonging to this subfamily, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport. Length = 290 |
| >gnl|CDD|223671 COG0598, CorA, Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
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| >gnl|CDD|216560 pfam01544, CorA, CorA-like Mg2+ transporter protein | Back alignment and domain information |
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| >gnl|CDD|181941 PRK09546, zntB, zinc transporter; Reviewed | Back alignment and domain information |
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| >gnl|CDD|213358 cd12824, ZntB-like, Salmonella typhimurium Zn2+ transporter ZntB-like subfamily | Back alignment and domain information |
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| >gnl|CDD|213361 cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family | Back alignment and domain information |
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| >gnl|CDD|213368 cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily | Back alignment and domain information |
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| >gnl|CDD|213363 cd12829, Alr1p-like, Saccharomyces cerevisiae Alr1p-like subfamily | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| COG0598 | 322 | CorA Mg2+ and Co2+ transporters [Inorganic ion tra | 100.0 | |
| PRK09546 | 324 | zntB zinc transporter; Reviewed | 100.0 | |
| TIGR00383 | 318 | corA magnesium Mg(2+) and cobalt Co(2+) transport | 100.0 | |
| PRK11085 | 316 | magnesium/nickel/cobalt transporter CorA; Provisio | 100.0 | |
| PF01544 | 292 | CorA: CorA-like Mg2+ transporter protein; InterPro | 100.0 | |
| KOG2662 | 414 | consensus Magnesium transporters: CorA family [Ino | 98.74 | |
| PF10267 | 395 | Tmemb_cc2: Predicted transmembrane and coiled-coil | 90.94 | |
| PF04156 | 191 | IncA: IncA protein; InterPro: IPR007285 Chlamydia | 90.51 | |
| PF11902 | 420 | DUF3422: Protein of unknown function (DUF3422); In | 90.41 | |
| PF07332 | 121 | DUF1469: Protein of unknown function (DUF1469); In | 89.72 |
| >COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
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Probab=100.00 E-value=5.2e-46 Score=381.04 Aligned_cols=246 Identities=21% Similarity=0.262 Sum_probs=214.0
Q ss_pred eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCCC
Q 040491 157 NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGS 236 (497)
Q Consensus 157 ~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g~ 236 (497)
+.+|||+.+.|++.+. +||||+ +.++|++|++++++.. +.+.+..+ +.+++|++++++|||+|+.
T Consensus 51 ~~~~l~~~~~ed~~~~------~~r~r~----e~~d~~~~i~~~~~~~-~~~~~~~~-~~~v~~i~~~~~liT~r~~--- 115 (322)
T COG0598 51 KTFGLHPLALEDLLDA------EQRPKV----ERYDDYLFIVLRDVNL-EEEEDKAE-TEPVSIIVGKRRLITIRHR--- 115 (322)
T ss_pred HhcCCCcchHHHHhCc------ccCCce----EeeCCEEEEEEEeecc-cccccccc-ceeEEEEEeCCEEEEEecC---
Confidence 7799999999998876 679999 9999999999999976 33222224 5999999999999999996
Q ss_pred CCCCcchhHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHHH
Q 040491 237 TSNINVLGIMEVQELLAAGGSNIPRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQE 316 (497)
Q Consensus 237 ~~~~~~~~i~~vrerl~~~~~~~~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~~ 316 (497)
+..++..+++++.++. ....++.+++++|+|.++|.+.+ +++++++++++||++++.++.++ .+++
T Consensus 116 ----~~~~~~~vr~r~~~~~-~~~~~~~~l~~~lld~i~d~~~~-~le~i~~~~~~ie~~l~~~~~~~--------~l~~ 181 (322)
T COG0598 116 ----PLPAFDRVRERLEKGT-LLTRGADELLYALLDAIVDNYFP-VLEQIEDELEAIEDQLLASTTNE--------ELER 181 (322)
T ss_pred ----CCccHHHHHHHHhccc-cccCCHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHhcCccHH--------HHHH
Confidence 7899999999999863 36789999999999999999666 99999999999999999988763 4578
Q ss_pred HHHHHHHHHHHHHhhcccchh-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040491 317 IRRLSTQVIRVKWSLHARDEI-------------------------STREMIEEQEAVRGRLFTIQDVMQSTVRAWLQDR 371 (497)
Q Consensus 317 I~~LRr~li~LRR~l~p~rEi-------------------------~l~rllEdleslre~l~~l~d~~~S~vs~~iN~r 371 (497)
|+.+|+.++.+|+.+.|++++ |+.++.+.++.++++++.++|++.+.++ ++
T Consensus 182 l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is----~~ 257 (322)
T COG0598 182 LGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLIN----NN 257 (322)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 888999999888887775433 6778888899999999999999999987 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 040491 372 SLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIGLLYLGLKKP 440 (497)
Q Consensus 372 mN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~l~~~~~k~~ 440 (497)
||++||+||++|+||+|||||||+|||||++|||++ ||||||+++++|+++++++++ |++.|+|
T Consensus 258 ~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~-~~~Gy~~~l~~m~~~~~~~~~----~frrk~W 321 (322)
T COG0598 258 QNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELD-WPYGYPIALILMLLLALLLYL----YFRRKGW 321 (322)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCC-CcccHHHHHHHHHHHHHHHHH----HHHhcCc
Confidence 999999999999999999999999999999999999 999999999999999876544 3445555
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| >PRK09546 zntB zinc transporter; Reviewed | Back alignment and domain information |
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| >TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA) | Back alignment and domain information |
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| >PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional | Back alignment and domain information |
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| >PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ] | Back alignment and domain information |
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| >KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism] | Back alignment and domain information |
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| >PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans | Back alignment and domain information |
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| >PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion | Back alignment and domain information |
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| >PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised | Back alignment and domain information |
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| >PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 497 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 47.9 bits (113), Expect = 6e-06
Identities = 46/389 (11%), Positives = 109/389 (28%), Gaps = 134/389 (34%)
Query: 36 DLWTDGLICAFEFVRGHKKMVKSK---------PGSKVEPSLTPKVNGFSLSKSSPVIES 86
++ AF K ++ ++ + SL + + ++
Sbjct: 252 NVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 87 AITIKDKENFLPRS------------------------YWIPIGWDRISQLVQ-SV-QID 120
+ + ++ LPR W + D+++ +++ S+ ++
Sbjct: 310 YLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 121 AGWNEQPFD----FPSEEDDVTVADLAAPYWERPVGPT------WCNAQWLHPAISVALR 170
+ FD FP + PT W + + V
Sbjct: 368 PAEYRKMFDRLSVFP---PSAHI-------------PTILLSLIWFDVIKSDVMVVVNKL 411
Query: 171 DESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDP-----LVDEDDVLIVLRSWQAQK 225
+ L+ + K +P + EL + + +VD ++ S
Sbjct: 412 HKYSLVEKQPKESTISIP-----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD--- 463
Query: 226 NLLTALHVKGSTSNINVLGIMEVQELLAAGGSNIPRTIYEVVA-HL-ACRLAQWDDRLFR 283
L ++ Y + HL + LFR
Sbjct: 464 --LIPPYLDQ--------------------------YFYSHIGHHLKNIEHPERMT-LFR 494
Query: 284 KSIFGAADEIELKFMNRRTHEDMHLVGIILNQEIRRLST-QVIRVKWSLHARDEISTREM 342
+F ++ +F+ ++ D N L+T Q ++ + + D E
Sbjct: 495 M-VF-----LDFRFLEQKIRHD----STAWNASGSILNTLQQLK-FYKPYICDNDPKYER 543
Query: 343 IE----------EQEAVRGRLFTIQDVMQ 361
+ E+ + + +T D+++
Sbjct: 544 LVNAILDFLPKIEENLICSK-YT--DLLR 569
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| 2iub_A | 363 | CORA, divalent cation transport-related protein; m | 100.0 | |
| 4ev6_A | 339 | Magnesium transport protein CORA; membrane protein | 100.0 | |
| 4egw_A | 280 | Magnesium transport protein CORA; magnesium transp | 99.94 | |
| 3ck6_A | 252 | Putative membrane transport protein; APC91421.1, Z | 99.93 | |
| 3nvo_A | 264 | Zinc transport protein ZNTB; alpha-beta-alpha sand | 99.93 | |
| 2bbh_A | 269 | Divalent cation transport-related protein; transpo | 99.84 | |
| 2hn1_A | 266 | CORA, magnesium and cobalt transporter; integral m | 99.81 | |
| 4ev6_A | 339 | Magnesium transport protein CORA; membrane protein | 80.47 |
| >2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=395.19 Aligned_cols=259 Identities=16% Similarity=0.179 Sum_probs=203.6
Q ss_pred ccccCCCccc-e-----e-eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEE
Q 040491 145 PYWERPVGPT-W-----C-NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIV 217 (497)
Q Consensus 145 ~~w~~~~~~~-W-----l-~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~ 217 (497)
..|.+..+|+ + + +.++|||++.+++.+. +||||+ |.|++++|++++.+.. +++..... +.+
T Consensus 71 ~~Wi~l~~p~~~~e~~~l~~~f~l~~l~ied~l~~------~~rpk~----e~~~~~lfivl~~~~~-~~~~~~~~-~~~ 138 (363)
T 2iub_A 71 PTWINITGIHRTDVVQRVGEFFGIHPLVLEDILNV------HQRPKV----EFFENYVFIVLKMFTY-DKNLHELE-SEQ 138 (363)
T ss_dssp CEEEEEECTTCHHHHHHHHHHTTCCHHHHHHHHCC------SSCCEE----EEETTEEEEEEEEEEE-ETTTTEEE-EEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHcCcChhHHHHHhCC------CCCCeE----EEECCEEEEEEEeeee-cccccccc-eEE
Confidence 4676665553 4 1 7799999999998876 689999 9999999999999876 33222223 588
Q ss_pred EEEEEeCCEEEEEEecCCCCCCCcchhHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 040491 218 LRSWQAQKNLLTALHVKGSTSNINVLGIMEVQELLAAGGSNI-PRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELK 296 (497)
Q Consensus 218 L~ifl~~n~LITv~~~~g~~~~~~~~~i~~vrerl~~~~~~~-~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~ 296 (497)
++||+++++|||+|++ +...++.+++++++++... ..++.++++.|+|.++|.+.+ +++.+++++|+||++
T Consensus 139 v~~~l~~~~liTv~~~-------~~~~~~~v~~rl~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~ 210 (363)
T 2iub_A 139 VSLILTKNCVLMFQEK-------IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEIDVLEEE 210 (363)
T ss_dssp EEEEEETTEEEEEESS-------SCCSCHHHHHHHHTTCTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEEEECCEEEEEEeC-------CCchHHHHHHHHHhcCCccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999987 6788999999998763222 347888999999999999666 999999999999999
Q ss_pred hcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchh-------------------------hHHHHHHHHHHHHH
Q 040491 297 FMNRRTHEDMHLVGIILNQEIRRLSTQVIRVKWSLHARDEI-------------------------STREMIEEQEAVRG 351 (497)
Q Consensus 297 v~~~~~~e~~~lL~~~l~~~I~~LRr~li~LRR~l~p~rEi-------------------------~l~rllEdleslre 351 (497)
++.++.++ ..++|+.+||+++.+||.+.|++++ |+.++.+.++.++|
T Consensus 211 v~~~~~~~--------~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~d~~~~~~e~~~~~re 282 (363)
T 2iub_A 211 VLERPEKE--------TVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVETFRD 282 (363)
T ss_dssp TTSSCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876543 4578999999999999988777654 67788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 040491 352 RLFTIQDVMQSTVRAWLQDRSLTVTHNLGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAIG 431 (497)
Q Consensus 352 ~l~~l~d~~~S~vs~~iN~rmN~VMKvLTIiSaIflPLTfItGiYGMNF~~MPel~~~pyGF~i~l~iMlliav~l~~~~ 431 (497)
+++.++|.+.+.++ ++||++||+||+||+||+|||||||+|||||++|||++ |+||||+++++|+++++++
T Consensus 283 ~l~~l~d~~~s~is----~~~N~imk~LTiit~IflP~T~IaGiyGMNf~~mPel~-~~~Gy~~~l~~m~~i~~~~---- 353 (363)
T 2iub_A 283 IVSGLLDVYLSSVS----NKTNEVMKVLTIIATIFMPLTFIAGIYGMNFEYMPELR-WKWGYPVVLAVMGVIAVIM---- 353 (363)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTTSCC---------------CHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCccc-CcHHHHHHHHHHHHHHHHH----
Confidence 99999999999987 99999999999999999999999999999999999999 9999999999999988653
Q ss_pred HHHhhccCC
Q 040491 432 LLYLGLKKP 440 (497)
Q Consensus 432 l~~~~~k~~ 440 (497)
+.|++.|+|
T Consensus 354 ~~~Fkrk~W 362 (363)
T 2iub_A 354 VVYFKKKKW 362 (363)
T ss_dssp HTTTTSCC-
T ss_pred HHHHHHccc
Confidence 344555556
|
| >4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A* | Back alignment and structure |
|---|
| >3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A | Back alignment and structure |
|---|
| >2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1 | Back alignment and structure |
|---|
| >2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 497 | ||||
| d2iuba2 | 64 | f.17.3.1 (A:286-349) Magnesium transport protein C | 5e-06 |
| >d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} Length = 64 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Transmembrane helix hairpin superfamily: Magnesium transport protein CorA, transmembrane region family: Magnesium transport protein CorA, transmembrane region domain: Magnesium transport protein CorA species: Thermotoga maritima [TaxId: 2336]
Score = 42.0 bits (99), Expect = 5e-06
Identities = 8/52 (15%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 379 LGVFGGCGLILSIITGLFGINVDGIPGARGSPYAFALFSGILFLLGVVLIAI 430
L + + L+ I G++G+N + +P + + + ++ ++ V+++
Sbjct: 9 LTIIATIFMPLTFIAGIYGMNFEYMPEL-RWKWGYPVVLAVMGVIAVIMVVY 59
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 497 | |||
| d2bbha1 | 232 | Magnesium transport protein CorA, soluble domain { | 99.86 | |
| d2iuba2 | 64 | Magnesium transport protein CorA {Thermotoga marit | 99.8 |
| >d2bbha1 d.328.1.1 (A:13-244) Magnesium transport protein CorA, soluble domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CorA soluble domain-like superfamily: CorA soluble domain-like family: CorA soluble domain-like domain: Magnesium transport protein CorA, soluble domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.7e-21 Score=185.64 Aligned_cols=152 Identities=13% Similarity=0.011 Sum_probs=126.0
Q ss_pred eccCCChhHHHHhhccccccccCCccccccccEEECCEEEEEEeccccCCCCCCcccceEEEEEEEeCCEEEEEEecCCC
Q 040491 157 NAQWLHPAISVALRDESKLISDRMKHLLYEVPVRVAGGLLFELLGQSAGDPLVDEDDVLIVLRSWQAQKNLLTALHVKGS 236 (497)
Q Consensus 157 ~~~~Lhpli~eal~~~e~lis~~qRPKlye~~E~~dd~lflvLr~~~~~d~~~~~~~itv~L~ifl~~n~LITv~~~~g~ 236 (497)
+.|+|||++.+++.+. +||||+ |.|++++|++++.+.. +++....+ +.+++||+++|+|||+|+.
T Consensus 66 ~~f~i~~l~led~l~~------~~rpk~----e~~~~~~fiil~~~~~-~~~~~~~~-~~~l~i~l~~~~lITv~~~--- 130 (232)
T d2bbha1 66 EFFGTHPLVLEDILNV------HQRPKV----EFFENYVFIVLKMFTY-DKNLHELE-SEQVSLILTKNCVLMFQEK--- 130 (232)
T ss_dssp HHHTCCHHHHHHHHCT------TCCCEE----EECSSEEEEEEEEEEC-CC--CCCE-EEEEEEEEETTEEEEEESS---
T ss_pred HHcCcCHhHHHHHhCc------ccCCce----EEeCCEEEEEEEeecc-cCCCCcce-eEEEEEEEECCEEEEEecC---
Confidence 7789999999998876 789999 9999999999999987 44333344 5899999999999999987
Q ss_pred CCCCcchhHHHHHHHHHhCCCCC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcccCCcchhhHHHHHHHH
Q 040491 237 TSNINVLGIMEVQELLAAGGSNI-PRTIYEVVAHLACRLAQWDDRLFRKSIFGAADEIELKFMNRRTHEDMHLVGIILNQ 315 (497)
Q Consensus 237 ~~~~~~~~i~~vrerl~~~~~~~-~~s~~~lL~~LLd~IvD~~~~~~le~Ie~~ideLEd~v~~~~~~e~~~lL~~~l~~ 315 (497)
+...++.+++++..+.... ..++.+++|.|++.++|.+.+ +++.+++++|+||+.++++++++ ..+
T Consensus 131 ----~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~lld~ivd~y~~-~l~~l~~~id~lE~~v~~~~~~~--------~l~ 197 (232)
T d2bbha1 131 ----IGDVFDPVRERIRYNRGIIRKKRADYLLYSLIDALVDDYFV-LLEKIDDEIDVLEEEVLERPEKE--------TVQ 197 (232)
T ss_dssp ----SCCSCHHHHHHHHTTCTTGGGSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCC---------------CHH
T ss_pred ----CCchHHHHHHHHHhCccccccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCcHH--------HHH
Confidence 7889999999998765322 357899999999999999666 99999999999999999877654 357
Q ss_pred HHHHHHHHHHHHHHhhcccch
Q 040491 316 EIRRLSTQVIRVKWSLHARDE 336 (497)
Q Consensus 316 ~I~~LRr~li~LRR~l~p~rE 336 (497)
+|+.+|++++.+||.+.|++|
T Consensus 198 ~i~~lrr~l~~lrr~l~p~re 218 (232)
T d2bbha1 198 RTHQLKRNLVELRKTIWPLRE 218 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999987
|
| >d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|