Citrus Sinensis ID: 040497

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVLK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHccHHHHHHcccccHHcccccccHHHHHHcccccccccccHHHHHHHHcccccccccccEEEEEcccccEEEEEEccccEEEcccccccccccccccccHHHHHEEEEEEEEEEEEEEEcccccccEEEEEEEEEcccccccccEEEEEEEEEEcccccEEEEEEEccccEEEEEEEccccccccccccEEcccEEEEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEcccccHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHccccccccccHHHHHHHHccccEcccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccHHHHHHHHHEEEEEEEEEEEcccccccEEEEEEEEEcHHHEEccccccccccccccccccEEEEEEEcccccEEEEEEEccccccccccccccccEEEEEEEEEEEcccccccEEEEEEEEEcccccccEEEEEEEEEEcHHHHHHHHccccc
Coil and Loop (DISEMBL)
mgaslssltdngesmgpglgdipesCVACVFMYLTPPEICNLARLNRAFrgaassdsvwenklpsnyqdlldlmpperylnlSKKEIFALlsrpvpfddgnkevwldrvtgRVCLSISTKAMAITGiedrrywnwipteesRFHVVAYLQQIWWFEVdgvvkfplpadvyTVSFRLHLGRFAKRLGRRVcnfehthgwdikpvrlelstsdgqqassecyldkmeqddangyhkrgcwidykvgefvvhdsepatevQFSMKqidcthskgglcvdsvfiipsnlrerkrkgvlk
Flexible Loop (DISEMBL)
mgaslssltdngesmgpglGDIPESCVACVFMYLTPPEICNLARLNRAFRGaassdsvwenkLPSNYQDLLDLMPPERYLNLSKKEIFALLsrpvpfddgnkevwldrvtgrvclsistkamaitgiedrryWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEhthgwdikpvrlELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCThskgglcvdsvfiipsnlrerkrkgvlk
Low Complexity Region (SEG)
MGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVLK
Disordered region (IsUnstruct)
********************DIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLEL************YL******DANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIP*************
Disordered Region (DISOPRED)
********************DIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDL*****************FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECY************HKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRER*******
Disordered Region (DISEMBL)
************ESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRE********
Disordered Region (DISPRO)
******************LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRK**L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q9LF92	300	F-box protein PP2-A15 OS=	yes	no	1.0	0.983	0.778	1e-138
Q9LN77	291	F-box protein PP2-A12 OS=	no	no	0.938	0.951	0.529	1e-84
Q9LEX0	290	F-box protein PP2-A13 OS=	no	no	0.922	0.937	0.532	2e-84
Q9CAN4	289	F-box protein PP2-A11 OS=	no	no	0.928	0.948	0.503	1e-76
Q9FJ80	291	F-box protein PP2-A14 OS=	no	no	0.932	0.945	0.474	9e-74
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.827	0.897	0.271	5e-25
Q9ZVR5	310	Putative F-box protein PP	no	no	0.477	0.454	0.383	3e-23
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.864	0.796	0.267	4e-23
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.891	0.862	0.278	4e-22
O80494	289	F-box protein PP2-B15 OS=	no	no	0.867	0.885	0.244	1e-21

>sp|Q9LF92|P2A15_ARATH F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1

 Score =  491 bits (1265), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/298 (77%), Positives = 267/298 (89%), Gaps = 3/298 (1%)

Query: 1   MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
           MG+SLS+L D  NG +MGPGLGDIPESCVACVFMYLTPPEICNLA LNR+FRGAASSDSV
Sbjct: 1   MGSSLSNLNDGTNGLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSV 60

Query: 59  WENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS 118
           WE KLP NYQDLLDL+PPERY +LSKK+IFA+LSRP+PFDD NKEVW+DRVTGRVC++IS
Sbjct: 61  WEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAIS 120

Query: 119 TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHL 178
            + M+ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG V+F LP  VY++SFR+HL
Sbjct: 121 ARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHL 180

Query: 179 GRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCW 238
           GRF KRLGRRVC+FE THGWD+KPVR  LSTSDGQ+AS E YLD +E+++A G HKRG W
Sbjct: 181 GRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYW 240

Query: 239 IDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIP-SNLRERKRKGVLK 295
           I+Y+VGEF+V+ SEP+TE+Q+SMKQIDCTHSKGGLCVDSVFI P  +++E KRK VLK
Sbjct: 241 IEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINPIGDVKEHKRKAVLK 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LN77|P2A12_ARATH F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1

 Score =  313 bits (802), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 153/289 (52%), Positives = 200/289 (69%), Gaps = 12/289 (4%)

Query: 4   SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKL 63
           S SS   +   + PGLGD+PE+CVA +   L P EIC  ++LNRAFRGA+ +D VWE+KL
Sbjct: 13  SSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKL 72

Query: 64  PSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMA 123
           P NY+D+L+ +      NL K+ ++A LSR   FDD  K+VW+D+ T  VCLSIS K ++
Sbjct: 73  PQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLS 132

Query: 124 ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAK 183
           ITGI+DRRYW+ IPT+ESRF  VAYLQQIWWFEVDG + FP P   Y++ FRL LGR  K
Sbjct: 133 ITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGK 192

Query: 184 RLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKV 243
             GRRVCN E  HGWDIKPVR +L T DGQ +SS+C L            +RG WI Y  
Sbjct: 193 WFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLT-----------ERGNWIHYHA 241

Query: 244 GEFVVHDSE-PATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRK 291
           G+ VV +S   +T+++FSM QIDCTH+KGGL +DSV + PS+ +++ ++
Sbjct: 242 GDVVVRESNRSSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQLKR 290

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LEX0|P2A13_ARATH F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1

 Score =  312 bits (799), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 154/289 (53%), Positives = 203/289 (70%), Gaps = 17/289 (5%)

Query: 1   MGASLSS------LTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAAS 54
           MGA++S         D+  S    L D+PE+CVA +   L PPEIC LARLNR FR A+S
Sbjct: 1   MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASS 60

Query: 55  SDSVWENKLPSNYQDLLDLMPPERYLN-LSKKEIFALLSRPVPFDDGNKEVWLDRVTGRV 113
           +D +WE+KLP+NY+ +   +  E  L  L KK+++A LS+P  FDDG KE+W+D+ TGR+
Sbjct: 61  ADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRL 120

Query: 114 CLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVS 173
           CLSIS+KA+ ITGI+DRRYW+ IPT+ESRF   AY+QQIWWFEV G  +   P+  Y++ 
Sbjct: 121 CLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLF 180

Query: 174 FRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYH 233
           FR+ LG+ +KRLGRR+CN EH HGWDIKPVR +L+TSD QQA S CYL+          +
Sbjct: 181 FRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLCYLN----------N 230

Query: 234 KRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIP 282
             G W  Y VG+F V + + +T ++FSM QIDCTH+KGGLC+DSV I+P
Sbjct: 231 NPGSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILP 279

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN4|P2A11_ARATH F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 144/286 (50%), Positives = 196/286 (68%), Gaps = 12/286 (4%)

Query: 4   SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKL 63
           +LSS   + + + PGLGD+PESCVA +   L P EIC  ++LN AF GA+ +D VWE+KL
Sbjct: 11  NLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKL 70

Query: 64  PSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMA 123
           P +Y+ +L+ +      NL K++IF  LSR   FD+GNK+ W+D+ TG +CL  S K ++
Sbjct: 71  PPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLS 130

Query: 124 ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAK 183
           ITGI+DRRYW+ IP+++SRF  VAY+QQIWWF+VDG + FP PA  Y+V FRL LG+  K
Sbjct: 131 ITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGK 190

Query: 184 RLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKV 243
           R G +V + E  HGW+IKPVR +LST DGQ +SS+C L +            G W  Y  
Sbjct: 191 RFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTEA-----------GNWSHYHA 239

Query: 244 GEFVV-HDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRER 288
           G+FVV      +T+++FSM QIDCTH+KGGLCVDSV + PS+ ++R
Sbjct: 240 GDFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDR 285

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ80|P2A14_ARATH F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1

 Score =  276 bits (707), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 140/295 (47%), Positives = 191/295 (64%), Gaps = 20/295 (6%)

Query: 1   MGASLSSLTDNGESMGP--GLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
           MGA+ SS+  +    G   GL D+PE+C+  +FMY+ PPEIC LAR+N++F  A+ SD+V
Sbjct: 1   MGAASSSIVRSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAV 60

Query: 59  WENKLPSNYQDLLDLMPPERY-------LNLSKKEIFALLSRPVPFDDGNKEVWLDRVTG 111
           WE+KLPSNY+ L+  +  ++        L   KKEI+A L RP  FD G KE WLD+ +G
Sbjct: 61  WEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSG 120

Query: 112 RVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYT 171
           +V L+IS KAM ITGI+DRRYW  I ++ESRF  + YL+QIWW E  G ++F      Y+
Sbjct: 121 KVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYS 180

Query: 172 VSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANG 231
           + F++ LG+  ++ GR+ C+ +  HGWDIKPVR +LSTSDGQ A SE +LD         
Sbjct: 181 LLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLD--------- 231

Query: 232 YHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLR 286
             + G W+ +  G+FVV +      V+FSM QIDCTH+KGGLC+D V I P   R
Sbjct: 232 --ESGRWVYHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEYR 284

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  115 bits (287), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 29/273 (10%)

Query: 23  PESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNL 82
           PE C++ +  +  P + C  A +++ F     SD +WE  LP++Y+ L+   PP R  + 
Sbjct: 18  PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI---PPSRVFSS 74

Query: 83  SKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESR 142
            K+  F+L + PV FDD  K VWL++ +G+ CL +S   ++I   ++ +YW WIP  ESR
Sbjct: 75  KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESR 134

Query: 143 FHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKP 202
           F  VA L+ + WFE+ G        +   +S R     +    G   C       +  + 
Sbjct: 135 FEKVAKLRDVCWFEIRG------RTNTRVLSPRTRYSAYIVFKGVDKC-------YGFQN 181

Query: 203 VRLELSTS-DGQQASSE--CYLDKMEQDDAN---GYHKRGCWIDYKVGEFV----VHDSE 252
           V +E +    GQ+ S    C+ + + +   N      +   W++ ++GEF     + D++
Sbjct: 182 VAIEAAVGVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGEFFNDGGIMDND 241

Query: 253 PATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNL 285
              E++ S  +    + K GL +  + I P+ +
Sbjct: 242 ---EIEMSALETKQLNRKCGLIIQGIEIRPAKI 271

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 83/146 (56%), Gaps = 5/146 (3%)

Query: 16  GPGLGD-IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLM 74
           GP L D +PE C++ +  + +P + C  A +++ F  A +SDSVW+  LPS+Y  L+   
Sbjct: 43  GPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLV--- 99

Query: 75  PPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS-TKAMAITGIEDRRYW 133
           PP R  +  K+  FA+   PV  +DG K  WL++  G+ C  +S  K+M IT +   +YW
Sbjct: 100 PPSRVFSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYW 159

Query: 134 NWIPTEESRFHVVAYLQQIWWFEVDG 159
            WI   E+RF  V  L  + WFEV G
Sbjct: 160 RWISIPEARFEEVPELLNVCWFEVRG 185

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 33/288 (11%)

Query: 11  NGESMGPGLGD---IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNY 67
            GE + PG      +PE C++ +  + +P + C  A +++ F  A SSD VW+  LP  Y
Sbjct: 50  GGEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEY 109

Query: 68  QDLLDLMPPERYLNLSKKEI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITG 126
           + L+        +  SKKE+ FAL   PV  +DG K  WL++ +G+ C+ +S+K + IT 
Sbjct: 110 ESLVS----RSRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITW 165

Query: 127 IEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG--VVKFPLPADVYTVSFRLHLGRFAKR 184
                YW WI   ESRF+ +A L  + WFE+ G    +   P   Y+             
Sbjct: 166 GSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPG 225

Query: 185 LGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYL--------DKMEQDDANGYHKRG 236
           LG               PV + L     + +    Y          +  +D      +  
Sbjct: 226 LGHL-------------PVEVGLGLVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQRED 272

Query: 237 CWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSN 284
            W++ ++GEF   + E   E++FS+ +I     K GL +  +   P+ 
Sbjct: 273 GWMEAELGEFF--NEERCDEIEFSVIEIKSPSWKSGLIIQGIEFRPTK 318

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  105 bits (262), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 143/298 (47%), Gaps = 35/298 (11%)

Query: 8   LTDNGESMGPG-LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSN 66
           L+ + +S G   L D+PE CV+ +  + +P + C LA +++ F  A  SD VWE  +P  
Sbjct: 24  LSASDKSHGVAELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPE 83

Query: 67  YQDLLDLMPPERYLNLSKKEI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAIT 125
           Y+ L+      ++L  SKKE+ FAL  + V  DDG K +W+++   + C+ IS   +AI 
Sbjct: 84  YESLISQSRAFKFL--SKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIA 141

Query: 126 GIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRL 185
                + W WIP  ++RF  VA L ++  FE+ G +     + V +   R       K+L
Sbjct: 142 WGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRIN----SRVISPKTRYSAYIVYKKL 197

Query: 186 GRRVC-NFEHTHGWDIKPVRLELSTSDGQQASSE--CYLDKMEQ---------DDANGYH 233
              +C  FE+        V + +   D +++     C+ + M++         +      
Sbjct: 198 N--ICYGFENVA----VEVVVGVVGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPER 251

Query: 234 KRGCWIDYKVGEF-----VVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLR 286
           ++  W++ K+GEF     +++D E    V    KQ    H K GL +  + I P+N+R
Sbjct: 252 RKDGWMEIKIGEFFNEGGLLNDDEIEM-VALEAKQ---RHWKRGLIIQGIEIRPTNIR 305

Arabidopsis thaliana (taxid: 3702)

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 134/294 (45%), Gaps = 38/294 (12%)

Query: 22  IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLN 81
           +PE+CVA +  + TP +  + A ++  FR A  SD VWE  LP++Y  ++        + 
Sbjct: 3   LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIF 62

Query: 82  LSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEES 141
            SKKE++  L   +  D+G K   +++++G++   +S++ ++IT  + R YW+W P  +S
Sbjct: 63  SSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDS 122

Query: 142 RFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIK 201
           RF     L    W E+ G ++         +S   + G +   L  +V +    +G D+ 
Sbjct: 123 RFSEGVQLIMTDWLEIIGKIQ------TGALSPNTNYGAY---LIMKVTS--RAYGLDLV 171

Query: 202 PVRLELSTSDGQQASSECYL----DKMEQDDANGYHKR---------------------G 236
           P    +   +G++     YL    +K +Q +   Y +R                      
Sbjct: 172 PAETSIKVGNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDD 231

Query: 237 CWIDYKVGEFVVHDSE--PATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRER 288
            W++ ++GEF     E     EV  S+ ++     KGG+ +D + + P  L+ R
Sbjct: 232 GWMEIELGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPKPLKVR 285

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
255575471	298	ATPP2-A13, putative [Ricinus communis] g	1.0	0.989	0.862	1e-151
225441048	299	PREDICTED: F-box protein PP2-A15 [Vitis	1.0	0.986	0.855	1e-150
224069756	295	f-box family protein [Populus trichocarp	1.0	1.0	0.850	1e-146
356505304	295	PREDICTED: F-box protein PP2-A15-like [G	1.0	1.0	0.810	1e-144
356548363	292	PREDICTED: F-box protein PP2-A15-like is	0.989	1.0	0.810	1e-143
356548365	298	PREDICTED: F-box protein PP2-A15-like is	0.989	0.979	0.794	1e-141
356533428	294	PREDICTED: F-box protein PP2-A15-like [G	0.989	0.993	0.801	1e-140
449440181	292	PREDICTED: F-box protein PP2-A15-like [C	0.983	0.993	0.784	1e-137
15231726	300	F-box protein PP2-A15 [Arabidopsis thali	1.0	0.983	0.778	1e-136
297816592	303	phloem protein 2-A15 [Arabidopsis lyrata	0.955	0.930	0.795	1e-135

>gi|255575471|ref|XP_002528637.1| ATPP2-A13, putative [Ricinus communis] gi|223531926|gb|EEF33740.1| ATPP2-A13, putative [Ricinus communis]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/298 (86%), Positives = 277/298 (92%), Gaps = 3/298 (1%)

Query: 1   MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
           MGASLSSLT+  NG + GPGLGDIPESCVACVF YLTPPEICNLARLNRAFRGAASSDSV
Sbjct: 1   MGASLSSLTEGTNGAANGPGLGDIPESCVACVFTYLTPPEICNLARLNRAFRGAASSDSV 60

Query: 59  WENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS 118
           W+ KLP NYQDLLD +PPERY NLSKK+IFALLSRPVPFDDGNKE WLDRVTGR+C+SIS
Sbjct: 61  WDKKLPRNYQDLLDFLPPERYHNLSKKDIFALLSRPVPFDDGNKEAWLDRVTGRICMSIS 120

Query: 119 TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHL 178
            K MAITGIEDRRYWNW+PTEESRFHVVAYLQQIWWFEVDGVVKFP PAD+YT+SFRLHL
Sbjct: 121 AKGMAITGIEDRRYWNWVPTEESRFHVVAYLQQIWWFEVDGVVKFPFPADIYTLSFRLHL 180

Query: 179 GRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCW 238
           GRF+KRLGRRV +FEHTHGWDIKPVR EL+TSDGQQA SEC LD+ EQD+ANG HKRGCW
Sbjct: 181 GRFSKRLGRRVSSFEHTHGWDIKPVRFELTTSDGQQALSECCLDETEQDEANGNHKRGCW 240

Query: 239 IDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRK-GVLK 295
           I+YKVGEFVV +SEPATEV+FSMKQIDCTHSKGGLCVDSVFIIPS+LRERKR+ GVLK
Sbjct: 241 IEYKVGEFVVTNSEPATEVRFSMKQIDCTHSKGGLCVDSVFIIPSDLRERKRRGGVLK 298

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441048|ref|XP_002283923.1| PREDICTED: F-box protein PP2-A15 [Vitis vinifera] gi|147860674|emb|CAN81450.1| hypothetical protein VITISV_025851 [Vitis vinifera] gi|297740037|emb|CBI30219.3| unnamed protein product [Vitis vinifera]

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/297 (85%), Positives = 278/297 (93%), Gaps = 2/297 (0%)

Query: 1   MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
           MGA+LS+LT+  NG ++GPGLGDIPESCVACVF+YLTPPEICNLARLNRAFRGAASSDSV
Sbjct: 1   MGAALSNLTEGANGSTIGPGLGDIPESCVACVFLYLTPPEICNLARLNRAFRGAASSDSV 60

Query: 59  WENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS 118
           WE+KLPSNYQDLLDL+PPERY NLSKK+IFALLSRPVPFD+GNKEVWLDR TGR+C++IS
Sbjct: 61  WESKLPSNYQDLLDLLPPERYHNLSKKDIFALLSRPVPFDNGNKEVWLDRDTGRICMAIS 120

Query: 119 TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHL 178
            K M ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKF  PADVYT+SFRL L
Sbjct: 121 AKGMVITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFHFPADVYTLSFRLQL 180

Query: 179 GRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCW 238
           GRF+KRLGRRV NFEHTHGWDIKPVR +LSTSDGQQAS EC LD+ E++DANG HKRGCW
Sbjct: 181 GRFSKRLGRRVPNFEHTHGWDIKPVRFQLSTSDGQQASFECCLDETEREDANGNHKRGCW 240

Query: 239 IDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVLK 295
           IDYKVGEF+V DSEPATEV+FSMKQIDCTHSKGG+CVDSVFIIPS+LR RKR+GVLK
Sbjct: 241 IDYKVGEFIVTDSEPATEVRFSMKQIDCTHSKGGICVDSVFIIPSDLRGRKRRGVLK 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069756|ref|XP_002326406.1| f-box family protein [Populus trichocarpa] gi|222833599|gb|EEE72076.1| f-box family protein [Populus trichocarpa]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/295 (85%), Positives = 274/295 (92%)

Query: 1   MGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWE 60
           MGASLS+LT+     GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWE
Sbjct: 1   MGASLSNLTEGAGMGGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWE 60

Query: 61  NKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTK 120
           NKLPSNYQDLL ++PP+RYLN SKK+IFALLSRP+PFDDGNKEVWLDRVTGRVC+SIS K
Sbjct: 61  NKLPSNYQDLLHILPPDRYLNFSKKDIFALLSRPLPFDDGNKEVWLDRVTGRVCMSISAK 120

Query: 121 AMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGR 180
            M+ITGIEDRRYW W+PTEESRFHVVAYLQQIWWFEVDGVVKFP PAD+YT+ FRLHLGR
Sbjct: 121 GMSITGIEDRRYWTWVPTEESRFHVVAYLQQIWWFEVDGVVKFPFPADIYTLYFRLHLGR 180

Query: 181 FAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWID 240
           F+KRLGRRVCNF+HTHGWDIKPVR ELSTSDGQQAS E  LD+ EQD+ANG  KRGCWID
Sbjct: 181 FSKRLGRRVCNFDHTHGWDIKPVRFELSTSDGQQASCEFCLDETEQDEANGNQKRGCWID 240

Query: 241 YKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVLK 295
           YKVGEF+V  SEPATEV+FSMKQIDCTHSKGGLCVDSVFIIPS+L++RKR+G+LK
Sbjct: 241 YKVGEFIVTGSEPATEVKFSMKQIDCTHSKGGLCVDSVFIIPSDLKDRKRRGILK 295

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505304|ref|XP_003521431.1| PREDICTED: F-box protein PP2-A15-like [Glycine max]

 Score =  515 bits (1326), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 239/295 (81%), Positives = 266/295 (90%)

Query: 1   MGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWE 60
           MGASLS+L  NG +  PGLGDIPE+CVA VF++LTPPEICNLARLNRAFRGAAS+DSVW+
Sbjct: 1   MGASLSNLGSNGSAAAPGLGDIPENCVARVFLHLTPPEICNLARLNRAFRGAASADSVWQ 60

Query: 61  NKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTK 120
            KLP NYQDLLDLMPPER+ NLSKK+IFALLSR VPFDDGNKEVWLDRVTGRVC+SIS K
Sbjct: 61  TKLPRNYQDLLDLMPPERHRNLSKKDIFALLSRAVPFDDGNKEVWLDRVTGRVCMSISAK 120

Query: 121 AMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGR 180
           AM+ITGI+DRRYW W+PTEESRF+ VAYLQQIWWFEVDG   FP PAD+YT+SFRLHLGR
Sbjct: 121 AMSITGIDDRRYWTWVPTEESRFNTVAYLQQIWWFEVDGEFSFPFPADIYTLSFRLHLGR 180

Query: 181 FAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWID 240
           F+KRLGRRVC++EHTHGWDIKPVR ELST DGQQASSECYLD+ E DD +G HKRG W+D
Sbjct: 181 FSKRLGRRVCSYEHTHGWDIKPVRFELSTMDGQQASSECYLDETEPDDLHGNHKRGHWVD 240

Query: 241 YKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVLK 295
           YKVGEF+V  SEP T+V+FSMKQIDCTHSKGGLCVDSVFIIP +LRERKR G+LK
Sbjct: 241 YKVGEFIVSGSEPTTKVRFSMKQIDCTHSKGGLCVDSVFIIPRDLRERKRSGILK 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548363|ref|XP_003542572.1| PREDICTED: F-box protein PP2-A15-like isoform 1 [Glycine max]

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 239/295 (81%), Positives = 268/295 (90%), Gaps = 3/295 (1%)

Query: 1   MGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWE 60
           MGASLSS   NG S+GPGLGDIPESCVACVF++LTPPEICNLARLNRAFRGAASSDSVWE
Sbjct: 1   MGASLSS---NGSSIGPGLGDIPESCVACVFLHLTPPEICNLARLNRAFRGAASSDSVWE 57

Query: 61  NKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTK 120
            KLP NYQDLLDL+PPER+ +LSKK+IFALLSRP+PFD G+KEVWLDRVTG+VC+SIS K
Sbjct: 58  AKLPRNYQDLLDLVPPERHRSLSKKDIFALLSRPLPFDHGHKEVWLDRVTGKVCMSISAK 117

Query: 121 AMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGR 180
           AM I GI+DRRYWNWIPTEESRFH VA+LQQIWWFEVDG V FP PAD+YT+SFRLHLGR
Sbjct: 118 AMTINGIDDRRYWNWIPTEESRFHTVAFLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGR 177

Query: 181 FAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWID 240
           F+KRLGRRVCN+EHTHGWDIKPV+ E STSDGQQAS EC LD+ E +D  G HKRGCW+D
Sbjct: 178 FSKRLGRRVCNYEHTHGWDIKPVKFEFSTSDGQQASCECCLDESEINDTYGNHKRGCWVD 237

Query: 241 YKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVLK 295
           YKVGEF+V  SEP T+V+FSMKQIDCTHSKGGLCVDSVFI+P++LRERKR+G+LK
Sbjct: 238 YKVGEFIVSGSEPTTQVRFSMKQIDCTHSKGGLCVDSVFIVPNDLRERKRRGILK 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548365|ref|XP_003542573.1| PREDICTED: F-box protein PP2-A15-like isoform 2 [Glycine max]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 239/301 (79%), Positives = 268/301 (89%), Gaps = 9/301 (2%)

Query: 1   MGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWE 60
           MGASLSS   NG S+GPGLGDIPESCVACVF++LTPPEICNLARLNRAFRGAASSDSVWE
Sbjct: 1   MGASLSS---NGSSIGPGLGDIPESCVACVFLHLTPPEICNLARLNRAFRGAASSDSVWE 57

Query: 61  NKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNK------EVWLDRVTGRVC 114
            KLP NYQDLLDL+PPER+ +LSKK+IFALLSRP+PFD G+K      EVWLDRVTG+VC
Sbjct: 58  AKLPRNYQDLLDLVPPERHRSLSKKDIFALLSRPLPFDHGHKVGAALQEVWLDRVTGKVC 117

Query: 115 LSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSF 174
           +SIS KAM I GI+DRRYWNWIPTEESRFH VA+LQQIWWFEVDG V FP PAD+YT+SF
Sbjct: 118 MSISAKAMTINGIDDRRYWNWIPTEESRFHTVAFLQQIWWFEVDGEVTFPFPADIYTLSF 177

Query: 175 RLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHK 234
           RLHLGRF+KRLGRRVCN+EHTHGWDIKPV+ E STSDGQQAS EC LD+ E +D  G HK
Sbjct: 178 RLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFEFSTSDGQQASCECCLDESEINDTYGNHK 237

Query: 235 RGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVL 294
           RGCW+DYKVGEF+V  SEP T+V+FSMKQIDCTHSKGGLCVDSVFI+P++LRERKR+G+L
Sbjct: 238 RGCWVDYKVGEFIVSGSEPTTQVRFSMKQIDCTHSKGGLCVDSVFIVPNDLRERKRRGIL 297

Query: 295 K 295
           K
Sbjct: 298 K 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533428|ref|XP_003535266.1| PREDICTED: F-box protein PP2-A15-like [Glycine max]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/297 (80%), Positives = 266/297 (89%), Gaps = 5/297 (1%)

Query: 1   MGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWE 60
           MGASLSS   NG S+GPGLGDIPESCVACVF++LTPPEICNLARLNRAFRGAASSDSVWE
Sbjct: 1   MGASLSS---NGSSIGPGLGDIPESCVACVFLHLTPPEICNLARLNRAFRGAASSDSVWE 57

Query: 61  NKLPSNYQDLLDLMPP--ERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS 118
            KLP NYQDLLDL+PP    + +LSKK+IFALLSRP+PFD G+KEVWLDRVTG+VC+SIS
Sbjct: 58  AKLPRNYQDLLDLVPPPERHHRSLSKKDIFALLSRPLPFDHGHKEVWLDRVTGKVCMSIS 117

Query: 119 TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHL 178
            KAM ITGI+DRRYWNWIPTEESRFH VAYLQQIWWFEVDG V FP PAD+YT+SFRLHL
Sbjct: 118 AKAMVITGIDDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVSFPFPADIYTLSFRLHL 177

Query: 179 GRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCW 238
           GRF+KRLGRRVCN++HTHGWDIKPV+ E STSDGQQAS EC LD+ E DD  G HKRG W
Sbjct: 178 GRFSKRLGRRVCNYDHTHGWDIKPVKFEFSTSDGQQASCECCLDETEIDDTYGNHKRGYW 237

Query: 239 IDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRKGVLK 295
           +DYKVGEF+V  SEP T+V+FSMKQIDCTHSKGGLCVD+VFI+PS+LRERKR+G+LK
Sbjct: 238 VDYKVGEFIVSGSEPTTQVRFSMKQIDCTHSKGGLCVDAVFIVPSDLRERKRRGILK 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440181|ref|XP_004137863.1| PREDICTED: F-box protein PP2-A15-like [Cucumis sativus] gi|449521339|ref|XP_004167687.1| PREDICTED: F-box protein PP2-A15-like [Cucumis sativus]

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 229/292 (78%), Positives = 265/292 (90%), Gaps = 2/292 (0%)

Query: 1   MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
           MGASLS++ +  NG ++GPGLGDIPE+CVA VF++LTPPEICNLARLNRAFRGAASSD+V
Sbjct: 1   MGASLSNMGEAVNGSTIGPGLGDIPENCVARVFLHLTPPEICNLARLNRAFRGAASSDAV 60

Query: 59  WENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS 118
           WE+KLPSNYQDLLD +PPERY NLSKK+I+ALLSRPVPFDDGNKEVWLDR+TGR+C+SIS
Sbjct: 61  WESKLPSNYQDLLDFLPPERYQNLSKKDIYALLSRPVPFDDGNKEVWLDRITGRICMSIS 120

Query: 119 TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHL 178
            K MAITGI+DRRYWNWIPT+ESRF+VVAYLQQIWWFEVDG+VKFP PAD+YT++FRLHL
Sbjct: 121 AKGMAITGIDDRRYWNWIPTDESRFNVVAYLQQIWWFEVDGMVKFPFPADIYTLTFRLHL 180

Query: 179 GRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCW 238
           GRF KRLGRRVC+FEHTHGWD+KPVR E+STSDGQQA+ E  LD+    D +G+ KRG W
Sbjct: 181 GRFYKRLGRRVCSFEHTHGWDVKPVRFEMSTSDGQQATHEFCLDEHGFIDVSGHRKRGSW 240

Query: 239 IDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKR 290
           I+YKVGEF+V+ S   TE++FSMKQIDCTHSKGGLCVDSVFIIPS L+ERKR
Sbjct: 241 IEYKVGEFLVNKSGSTTEIRFSMKQIDCTHSKGGLCVDSVFIIPSILKERKR 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231726|ref|NP_190868.1| F-box protein PP2-A15 [Arabidopsis thaliana] gi|75263847|sp|Q9LF92.1|P2A15_ARATH RecName: Full=F-box protein PP2-A15; AltName: Full=Protein PHLOEM PROTEIN 2-LIKE A15; Short=AtPP2-A15 gi|7529724|emb|CAB86904.1| putative protein [Arabidopsis thaliana] gi|332645503|gb|AEE79024.1| F-box protein PP2-A15 [Arabidopsis thaliana]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/298 (77%), Positives = 267/298 (89%), Gaps = 3/298 (1%)

Query: 1   MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
           MG+SLS+L D  NG +MGPGLGDIPESCVACVFMYLTPPEICNLA LNR+FRGAASSDSV
Sbjct: 1   MGSSLSNLNDGTNGLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSV 60

Query: 59  WENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS 118
           WE KLP NYQDLLDL+PPERY +LSKK+IFA+LSRP+PFDD NKEVW+DRVTGRVC++IS
Sbjct: 61  WEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAIS 120

Query: 119 TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHL 178
            + M+ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG V+F LP  VY++SFR+HL
Sbjct: 121 ARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHL 180

Query: 179 GRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCW 238
           GRF KRLGRRVC+FE THGWD+KPVR  LSTSDGQ+AS E YLD +E+++A G HKRG W
Sbjct: 181 GRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYW 240

Query: 239 IDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIP-SNLRERKRKGVLK 295
           I+Y+VGEF+V+ SEP+TE+Q+SMKQIDCTHSKGGLCVDSVFI P  +++E KRK VLK
Sbjct: 241 IEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINPIGDVKEHKRKAVLK 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816592|ref|XP_002876179.1| phloem protein 2-A15 [Arabidopsis lyrata subsp. lyrata] gi|297322017|gb|EFH52438.1| phloem protein 2-A15 [Arabidopsis lyrata subsp. lyrata]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 226/284 (79%), Positives = 257/284 (90%), Gaps = 2/284 (0%)

Query: 1   MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
           MG+SLS+L D  N  +MGPGLGDIPESCVACVFMYLTPPEICNLA LNR+FRGAASSDSV
Sbjct: 1   MGSSLSNLNDGTNCLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSV 60

Query: 59  WENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS 118
           WE KLP+NYQDLLDL+PPERY +LSKK+IFA+LSRP+PFDD NKE+W+DRVTGRVC++IS
Sbjct: 61  WEKKLPANYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKELWIDRVTGRVCMAIS 120

Query: 119 TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHL 178
            + MAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG V+F LP  +Y++SFR+HL
Sbjct: 121 ARGMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGIYSLSFRIHL 180

Query: 179 GRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCW 238
           GRF KRLGRRVC+FEHTHGWD+KPVR  LSTSDGQ+AS E YLD +E+D+A   HKRGCW
Sbjct: 181 GRFTKRLGRRVCHFEHTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERDEALKQHKRGCW 240

Query: 239 IDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIP 282
           IDY+VGEF+V  SEP+TE+Q+SMKQIDCTHSKGGLCVDSVFI P
Sbjct: 241 IDYRVGEFIVSGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINP 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2085236	300	PP2-A15 "phloem protein 2-A15"	1.0	0.983	0.778	7.3e-130
TAIR|locus:2195042	291	PP2-A12 "phloem protein 2-A12"	0.938	0.951	0.529	3.3e-79
TAIR|locus:2100997	291	PP2-A13 "phloem protein 2-A13"	0.861	0.872	0.556	1.6e-77
TAIR|locus:2015238	289	PP2-A11 "phloem protein 2-A11"	0.928	0.948	0.506	4.5e-75
TAIR|locus:2173078	291	PP2-A14 "phloem protein 2-A14"	0.932	0.945	0.471	6.3e-69
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.488	0.45	0.375	3.7e-29
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.823	0.893	0.284	9.4e-27
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.474	0.451	0.401	8.4e-26
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.894	0.865	0.276	7.6e-25
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.823	0.968	0.242	5.5e-22

TAIR|locus:2085236 PP2-A15 "phloem protein 2-A15" [Arabidopsis thaliana (taxid:3702)]

 Score = 1274 (453.5 bits), Expect = 7.3e-130, P = 7.3e-130
 Identities = 232/298 (77%), Positives = 267/298 (89%)

Query:     1 MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
             MG+SLS+L D  NG +MGPGLGDIPESCVACVFMYLTPPEICNLA LNR+FRGAASSDSV
Sbjct:     1 MGSSLSNLNDGTNGLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSV 60

Query:    59 WENKLPSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS 118
             WE KLP NYQDLLDL+PPERY +LSKK+IFA+LSRP+PFDD NKEVW+DRVTGRVC++IS
Sbjct:    61 WEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAIS 120

Query:   119 TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHL 178
              + M+ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG V+F LP  VY++SFR+HL
Sbjct:   121 ARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHL 180

Query:   179 GRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCW 238
             GRF KRLGRRVC+FE THGWD+KPVR  LSTSDGQ+AS E YLD +E+++A G HKRG W
Sbjct:   181 GRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYW 240

Query:   239 IDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIP-SNLRERKRKGVLK 295
             I+Y+VGEF+V+ SEP+TE+Q+SMKQIDCTHSKGGLCVDSVFI P  +++E KRK VLK
Sbjct:   241 IEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINPIGDVKEHKRKAVLK 298

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2195042 PP2-A12 "phloem protein 2-A12" [Arabidopsis thaliana (taxid:3702)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 153/289 (52%), Positives = 200/289 (69%)

Query:     4 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKL 63
             S SS   +   + PGLGD+PE+CVA +   L P EIC  ++LNRAFRGA+ +D VWE+KL
Sbjct:    13 SSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKL 72

Query:    64 PSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMA 123
             P NY+D+L+ +      NL K+ ++A LSR   FDD  K+VW+D+ T  VCLSIS K ++
Sbjct:    73 PQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLS 132

Query:   124 ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAK 183
             ITGI+DRRYW+ IPT+ESRF  VAYLQQIWWFEVDG + FP P   Y++ FRL LGR  K
Sbjct:   133 ITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGK 192

Query:   184 RLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKV 243
               GRRVCN E  HGWDIKPVR +L T DGQ +SS+C L +           RG WI Y  
Sbjct:   193 WFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTE-----------RGNWIHYHA 241

Query:   244 GEFVVHDSE-PATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRERKRK 291
             G+ VV +S   +T+++FSM QIDCTH+KGGL +DSV + PS+ +++ ++
Sbjct:   242 GDVVVRESNRSSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQLKR 290

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2100997 PP2-A13 "phloem protein 2-A13" [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 148/266 (55%), Positives = 194/266 (72%)

Query:    19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPER 78
             L D+PE+CVA +   L PPEIC LARLNR FR A+S+D +WE+KLP+NY+ +   +  E 
Sbjct:    25 LVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEI 84

Query:    79 YLN-LSKKEIFALLSRPVPFDDGNK-EVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWI 136
              L  L KK+++A LS+P  FDDG K E+W+D+ TGR+CLSIS+KA+ ITGI+DRRYW+ I
Sbjct:    85 TLTKLIKKDLYAKLSQPNLFDDGTKQELWIDKNTGRLCLSISSKALRITGIDDRRYWSHI 144

Query:   137 PTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTH 196
             PT+ESRF   AY+QQIWWFEV G  +   P+  Y++ FR+ LG+ +KRLGRR+CN EH H
Sbjct:   145 PTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSKRLGRRICNSEHIH 204

Query:   197 GWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATE 256
             GWDIKPVR +L+TSD QQA S CYL+          +  G W  Y VG+F V + + +T 
Sbjct:   205 GWDIKPVRFQLATSDNQQAVSLCYLN----------NNPGSWSHYHVGDFKVTNPDVSTG 254

Query:   257 VQFSMKQIDCTHSKGGLCVDSVFIIP 282
             ++FSM QIDCTH+KGGLC+DSV I+P
Sbjct:   255 IKFSMTQIDCTHTKGGLCIDSVLILP 280

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2015238 PP2-A11 "phloem protein 2-A11" [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 145/286 (50%), Positives = 198/286 (69%)

Query:     4 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKL 63
             +LSS   + + + PGLGD+PESCVA +   L P EIC  ++LN AF GA+ +D VWE+KL
Sbjct:    11 NLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKL 70

Query:    64 PSNYQDLLDLMPPERYLNLSKKEIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMA 123
             P +Y+ +L+ +      NL K++IF  LSR   FD+GNK+ W+D+ TG +CL  S K ++
Sbjct:    71 PPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLS 130

Query:   124 ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAK 183
             ITGI+DRRYW+ IP+++SRF  VAY+QQIWWF+VDG + FP PA  Y+V FRL LG+  K
Sbjct:   131 ITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGK 190

Query:   184 RLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKV 243
             R G +V + E  HGW+IKPVR +LST DGQ +SS+C L +            G W  Y  
Sbjct:   191 RFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTEA-----------GNWSHYHA 239

Query:   244 GEFVVHDSEPA-TEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLRER 288
             G+FVV  S+ + T+++FSM QIDCTH+KGGLCVDSV + PS+ ++R
Sbjct:   240 GDFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDR 285

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2173078 PP2-A14 "phloem protein 2-A14" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 139/295 (47%), Positives = 193/295 (65%)

Query:     1 MGASLSSLTDNGESMGP--GLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSV 58
             MGA+ SS+  +    G   GL D+PE+C+  +FMY+ PPEIC LAR+N++F  A+ SD+V
Sbjct:     1 MGAASSSIVRSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAV 60

Query:    59 WENKLPSNYQDLLD-LMPPERYLNLS------KKEIFALLSRPVPFDDGNKEVWLDRVTG 111
             WE+KLPSNY+ L+  ++  ++ + +       KKEI+A L RP  FD G KE WLD+ +G
Sbjct:    61 WEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSG 120

Query:   112 RVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYT 171
             +V L+IS KAM ITGI+DRRYW  I ++ESRF  + YL+QIWW E  G ++F      Y+
Sbjct:   121 KVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYS 180

Query:   172 VSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDDANG 231
             + F++ LG+  ++ GR+ C+ +  HGWDIKPVR +LSTSDGQ A SE +LD+        
Sbjct:   181 LLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDES------- 233

Query:   232 YHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNLR 286
                 G W+ +  G+FVV +      V+FSM QIDCTH+KGGLC+D V I P   R
Sbjct:   234 ----GRWVYHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEYR 284

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 57/152 (37%), Positives = 85/152 (55%)

Query:    12 GESMGPGLG--DI-PESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQ 68
             GE + PG    D+ PE C++ +  + +P + C  A +++ F  A SSD VW+  LP  Y+
Sbjct:    51 GEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYE 110

Query:    69 DLLDLMPPERYLNLSKKEI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGI 127
              L+      R    SKKE+ FAL   PV  +DG K  WL++ +G+ C+ +S+K + IT  
Sbjct:   111 SLVSR---SRVF-ASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWG 166

Query:   128 EDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 159
                 YW WI   ESRF+ +A L  + WFE+ G
Sbjct:   167 SSPEYWQWISIPESRFNKIAELLDVCWFEIRG 198

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 78/274 (28%), Positives = 137/274 (50%)

Query:    23 PESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNL 82
             PE C++ +  +  P + C  A +++ F     SD +WE  LP++Y+ L+   PP R  + 
Sbjct:    18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI---PPSRVFS- 73

Query:    83 SKKEI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEES 141
             SKKE+ F+L + PV FDD  K VWL++ +G+ CL +S   ++I   ++ +YW WIP  ES
Sbjct:    74 SKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPES 133

Query:   142 RFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIK 201
             RF  VA L+ + WFE+ G        +   +S R     +    G   C     +G+  +
Sbjct:   134 RFEKVAKLRDVCWFEIRG------RTNTRVLSPRTRYSAYIVFKGVDKC-----YGF--Q 180

Query:   202 PVRLELSTSD-GQQASSE--CYLDKMEQDDANGY---HKRGCWIDYKVGEFV----VHDS 251
              V +E +    GQ+ S    C+ + + +   N      +   W++ ++GEF     + D+
Sbjct:   181 NVAIEAAVGVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGEFFNDGGIMDN 240

Query:   252 EPATEVQFSMKQIDCTHSKGGLCVDSVFIIPSNL 285
             +   E++ S  +    + K GL +  + I P+ +
Sbjct:   241 D---EIEMSALETKQLNRKCGLIIQGIEIRPAKI 271

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 59/147 (40%), Positives = 86/147 (58%)

Query:    16 GPGLGD-IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLM 74
             GP L D +PE C++ +  + +P + C  A +++ F  A +SDSVW+  LPS+Y  L+   
Sbjct:    43 GPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLV--- 99

Query:    75 PPERYLNLSKKEI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTK-AMAITGIEDRRY 132
             PP R  + SKKE+ FA+   PV  +DG K  WL++  G+ C  +S K +M IT +   +Y
Sbjct:   100 PPSRVFS-SKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQY 158

Query:   133 WNWIPTEESRFHVVAYLQQIWWFEVDG 159
             W WI   E+RF  V  L  + WFEV G
Sbjct:   159 WRWISIPEARFEEVPELLNVCWFEVRG 185

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 82/297 (27%), Positives = 142/297 (47%)

Query:     8 LTDNGESMGPG-LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSN 66
             L+ + +S G   L D+PE CV+ +  + +P + C LA +++ F  A  SD VWE  +P  
Sbjct:    24 LSASDKSHGVAELDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPE 83

Query:    67 YQDLLDLMPPERYLNLSKKEI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAIT 125
             Y+ L+      ++L  SKKE+ FAL  + V  DDG K +W+++   + C+ IS   +AI 
Sbjct:    84 YESLISQSRAFKFL--SKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIA 141

Query:   126 GIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRL 185
                  + W WIP  ++RF  VA L ++  FE+ G +     + V +   R       K+L
Sbjct:   142 WGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRIN----SRVISPKTRYSAYIVYKKL 197

Query:   186 GRRVCNFEHTHGWDIKPVRLELSTSDGQQASSEC--YL---DKMEQ-----DDANGYHK- 234
                +C     +G++   V + +    GQ     C  Y+   + M++     D      K 
Sbjct:   198 N--IC-----YGFENVAVEVVVGVV-GQDLEESCRRYICFDETMDEQFRRRDRGKNLVKP 249

Query:   235 ---RGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCT--HSKGGLCVDSVFIIPSNLR 286
                +  W++ K+GEF  ++     + +  M  ++    H K GL +  + I P+N+R
Sbjct:   250 ERRKDGWMEIKIGEFF-NEGGLLNDDEIEMVALEAKQRHWKRGLIIQGIEIRPTNIR 305

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 65/268 (24%), Positives = 127/268 (47%)

Query:    21 DIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYL 80
             D+PE C+A +  + +P + C ++ +++  R AA S++ WE  LPS+Y+  +D        
Sbjct:     5 DLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYID----NSLS 60

Query:    81 NLSKKEIFA-LLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTE 139
               S K++F      P+  +DG    W+++ +G+ C  +S + + I  ++   +W W+   
Sbjct:    61 RFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIP 120

Query:   140 ESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAKRLGRRVCNFEHTHGWD 199
             +SRF  VA L  + WFE+ G +   L +     ++  +L    + +G        + G++
Sbjct:   121 DSRFEEVAGLLMVCWFEIRGKISTSLLSKA--TNYSAYLVFKEQEMG--------SFGFE 170

Query:   200 IKPVRLEL-STSDGQQASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVV-HDSEPATEV 257
               P+ +   ST      +   +L    Q+      +   W++ ++GE+ V  D E   E+
Sbjct:   171 SLPLEVSFRSTRTEVYNNRRVFLKSGTQES-----REDGWLEIELGEYYVGFDDE---EI 222

Query:   258 QFSMKQIDCTHSKGGLCVDSVFIIPSNL 285
             + S+ +      KGG+ V  + I P  L
Sbjct:   223 EMSVLETREGGWKGGIIVQGIEIRPKEL 250

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF92	P2A15_ARATH	No assigned EC number	0.7785	1.0	0.9833	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_28000128 f-box family protein (282 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
pfam14299	154	pfam14299, PP2, Phloem protein 2	4e-57
pfam12937	47	pfam12937, F-box-like, F-box-like	4e-05

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  180 bits (459), Expect = 4e-57
 Identities = 60/175 (34%), Positives = 86/175 (49%), Gaps = 23/175 (13%)

Query: 111 GRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPL--PAD 168
           G+ C  +S +A++IT  +D RYW WIP  ESRF  VA L  + W E+ G +   +  P  
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 169 VYTVSFRLHLGRFAKRLGRRVCNFEHTHGWDIKPVRLELSTSDGQQASSECYLDKMEQDD 228
            Y+      L              +  +GWD KPV   +S  DGQ++  E Y+   E   
Sbjct: 61  TYSAYLVFKL-------------ADRAYGWDEKPVEFSVSVPDGQKSRQERYVCLPE--- 104

Query: 229 ANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDCTHSKGGLCVDSVFIIPS 283
                +   W++ +VGEF     E   EV+FSM+++D  H KGGL VD + I P 
Sbjct: 105 ----KRGDGWMEIEVGEFFNEGGE-DGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 16/43 (37%), Positives = 25/43 (58%)

Query: 19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWEN 61
          L D+P+  +  +F YL P ++  LA + R +R  AS DS+W  
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRR 43

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.63
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.28
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.25
PF06881	109	Elongin_A: RNA polymerase II transcription factor	94.25
KOG2997	366	consensus F-box protein FBX9 [General function pre	87.99
KOG3926	332	consensus F-box proteins [Amino acid transport and	87.46
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	80.59
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	80.49

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=4.1e-61  Score=413.46  Aligned_cols=150  Identities=36%  Similarity=0.730  Sum_probs=138.1

Q ss_pred             CceEEEEeeccceeecCCCCCCeeeecCCcccccceeEEeEeeEEEEeeEEeecC--CCCcEEEEEEEEecccccccCce
Q 040497          111 GRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPL--PADVYTVSFRLHLGRFAKRLGRR  188 (295)
Q Consensus       111 GkkCymLSAR~L~ItWgdd~~YW~Wi~~peSRF~EVAeL~~VcWLEI~Gki~t~l--p~t~Y~ay~v~kl~~~~~~~g~~  188 (295)
                      |+||||||||+|+|||||||+||+|+++|+|||.|||||++||||||+|+|++++  |+|+|+||||||+          
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl----------   70 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKL----------   70 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEe----------
Confidence            8999999999999999999999999999999999999999999999999999985  9999999999999          


Q ss_pred             eecccccccCCCCCeEEEEeecCCce--eeeEEecccCccccCCCccccCceEEEEeeeEEecCCCCCeEEEEEEEEeeC
Q 040497          189 VCNFEHTHGWDIKPVRLELSTSDGQQ--ASSECYLDKMEQDDANGYHKRGCWIDYKVGEFVVHDSEPATEVQFSMKQIDC  266 (295)
Q Consensus       189 ~~~~~~~~Gwd~~Pv~~~l~~~~g~~--~~~~~~l~~~~~~~~~~~~~rdgW~EielGeF~~~~~~~~~eV~fsl~E~~~  266 (295)
                         ++++|||+..||++++++++++.  ..+.+++.         .+++|||||||+|||+|+++ ++++|+|+|+|+++
T Consensus        71 ---~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~---------~~r~dgW~Eie~GeF~~~~~-~~~ev~f~~~E~~~  137 (154)
T PF14299_consen   71 ---KDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLP---------KERGDGWMEIELGEFFNEGG-DDGEVEFSMYEVDS  137 (154)
T ss_pred             ---cCCCCCCCcCCEEEEEEeCCCccccceeeEEcC---------CCCCCCEEEEEcceEEecCC-CCcEEEEEEEEecC
Confidence               68899999999999999998875  33344443         35679999999999999965 78999999999999


Q ss_pred             CCccccEEEEEEEEEec
Q 040497          267 THSKGGLCVDSVFIIPS  283 (295)
Q Consensus       267 ~~wK~GLiV~GIeIRPk  283 (295)
                      ++||+||||+|||||||
T Consensus       138 ~~wK~GLiv~GieIRPK  154 (154)
T PF14299_consen  138 GHWKGGLIVEGIEIRPK  154 (154)
T ss_pred             CcccCeEEEEEEEEecC
Confidence            99999999999999998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.63  E-value=1.8e-08  Score=69.49  Aligned_cols=45  Identities=24%  Similarity=0.592  Sum_probs=40.2

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCC
Q 040497           19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKL   63 (295)
Q Consensus        19 ~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~fl   63 (295)
                      +.+||+|.+..|+++++|.|.+++++||+.|+.++.++.+|.++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            478999999999999999999999999999999999999998753

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.28  E-value=8.5e-07  Score=58.28  Aligned_cols=40  Identities=20%  Similarity=0.521  Sum_probs=38.6

Q ss_pred             chhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhcc
Q 040497           22 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWEN   61 (295)
Q Consensus        22 LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~   61 (295)
                      ||++++..|+++++|.|.+++++||+.||.+.+.+.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.25  E-value=2.3e-07  Score=63.69  Aligned_cols=44  Identities=23%  Similarity=0.604  Sum_probs=38.6

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccC
Q 040497           19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENK   62 (295)
Q Consensus        19 ~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~f   62 (295)
                      +.+||++++.+|++++++.|+++++.||+.|+.+.+++..|.++
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            56899999999999999999999999999999999999999764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=94.25  E-value=0.033  Score=45.16  Aligned_cols=71  Identities=14%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             CCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCchhhhcCCCCccCCCccHHHHHHHhc
Q 040497           18 GLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLS   92 (295)
Q Consensus        18 ~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~skKely~~Lc   92 (295)
                      .++++|...|.-||...+|....++-.-|+.+  +-++|.+|.+|+=.||+.-.....  ....-+-+++|.++.
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~--~~~~~~Wr~~Y~~~~   73 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK--PKEPESWRELYEKLK   73 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc--ccccchHHHHHHHHH
Confidence            47889999999999999999999999999866  567999999999999975222211  112357899999976

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=87.99  E-value=0.19  Score=48.45  Aligned_cols=79  Identities=22%  Similarity=0.365  Sum_probs=56.7

Q ss_pred             CCCchhHHHHHHHhcCC-----hHHHHHHhhhhHHhhcccCchhhhccCCCCCchhhhcCCCCc---cCCCccHHHHHHH
Q 040497           19 LGDIPESCVACVFMYLT-----PPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPE---RYLNLSKKEIFAL   90 (295)
Q Consensus        19 ~~~LPe~cia~ils~ts-----P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~---~~~~~skKely~~   90 (295)
                      |..||++.+-.|+...=     -++-.++|+|++.|+-+|..|.+|..++-.-|..-+-.+.+.   +.-..|-+++|+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~  186 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE  186 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence            57899999988886654     499999999999999999999999998876664322222110   1123467777765


Q ss_pred             hcCC-CccCC
Q 040497           91 LSRP-VPFDD   99 (295)
Q Consensus        91 Lc~p-~lld~   99 (295)
                        +| |.+|+
T Consensus       187 --RpRvrFdG  194 (366)
T KOG2997|consen  187 --RPRVRFDG  194 (366)
T ss_pred             --Ccceeecc
Confidence              55 56654

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=87.46  E-value=0.36  Score=45.71  Aligned_cols=78  Identities=15%  Similarity=0.315  Sum_probs=56.5

Q ss_pred             CCCCCCCchhHHHHHHHhcCC-hHHHHHHhhhhHHhhcccCchhhhccCCCCCch--hhhcCCCCccCCCccHHHHHHHh
Q 040497           15 MGPGLGDIPESCVACVFMYLT-PPEICNLARLNRAFRGAASSDSVWENKLPSNYQ--DLLDLMPPERYLNLSKKEIFALL   91 (295)
Q Consensus        15 ~~~~~~~LPe~cia~ils~ts-P~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~--~i~~~~~~~~~~~~skKely~~L   91 (295)
                      .+..|.|||++|+..||-+++ -+|.--+|.|-+++....+.+-+|.+.+-=.|.  +|-..+.-..-....-|++|+.|
T Consensus       198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~k~~q~dWkqmyf~L  277 (332)
T KOG3926|consen  198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILSKKGQKDWKQMYFQL  277 (332)
T ss_pred             CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccchhHHHHHHHH
Confidence            578899999999999999865 899999999999999999999999987653331  23222210000112357888887


Q ss_pred             c
Q 040497           92 S   92 (295)
Q Consensus        92 c   92 (295)
                      -
T Consensus       278 ~  278 (332)
T KOG3926|consen  278 R  278 (332)
T ss_pred             H
Confidence            4

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=80.59  E-value=1.5  Score=43.21  Aligned_cols=39  Identities=18%  Similarity=0.278  Sum_probs=35.2

Q ss_pred             CCCCchhHHHHHHHhcC-ChHHHHHHhhhhHHhhcccCch
Q 040497           18 GLGDIPESCVACVFMYL-TPPEICNLARLNRAFRGAASSD   56 (295)
Q Consensus        18 ~~~~LPe~cia~ils~t-sP~d~cr~a~vs~~fr~aa~sD   56 (295)
                      .-.+||++.+..|..++ +..|.-|+++|+++.|+|+...
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~   42 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV   42 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence            34689999999999998 7899999999999999998863

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=80.49  E-value=0.95  Score=46.63  Aligned_cols=52  Identities=13%  Similarity=0.213  Sum_probs=46.4

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCc
Q 040497           16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNY   67 (295)
Q Consensus        16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~   67 (295)
                      ...+..||-+-.-.|+++++|++.+.+++||+.|+.-++.|.+|.+.+.+..
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~  156 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELI  156 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhc
Confidence            4457789999999999999999999999999999999999999997766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	5e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 10/49 (20%), Positives = 23/49 (46%)

Query: 13 ESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWEN 61
             G     +P+  +  +F  L  PE+  ++ + + +   AS +S+W+ 
Sbjct: 3  NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQT 51

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 9/53 (16%), Positives = 18/53 (33%)

Query: 16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQ 68
             L  +P      +  +L+P ++C L   N  +        +W   L  +  
Sbjct: 2  ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLP 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.74
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.41
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.81
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.65
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.3
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.8
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	91.93
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	83.48

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.74  E-value=6e-09  Score=72.41  Aligned_cols=47  Identities=21%  Similarity=0.483  Sum_probs=40.5

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccC
Q 040497           16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENK   62 (295)
Q Consensus        16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~f   62 (295)
                      ...+.+||++++..|+++++|.|.+++++||+.|+.++.++.+|+++
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            45789999999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.41  E-value=7.2e-08  Score=90.26  Aligned_cols=79  Identities=14%  Similarity=0.294  Sum_probs=61.5

Q ss_pred             CCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCch---hhhcCCCCcc----------C--CCc
Q 040497           18 GLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQ---DLLDLMPPER----------Y--LNL   82 (295)
Q Consensus        18 ~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~---~i~~~~~~~~----------~--~~~   82 (295)
                      .|++||.+++-+|+||++|.|+||+++||+.+|..|+.+.+|+.||-+|++   +|...+.|..          .  .+.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~   83 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFF   83 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CC
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCccccccccccc
Confidence            478999999999999999999999999999999999999999999988754   3433222100          0  134


Q ss_pred             cHHHHHHHhcCCCcc
Q 040497           83 SKKEIFALLSRPVPF   97 (295)
Q Consensus        83 skKely~~Lc~p~ll   97 (295)
                      .++.+|.+=| |.|+
T Consensus        84 ~~~~~y~~~~-p~l~   97 (312)
T 3l2o_B           84 DYMAVYRMCC-PYLI   97 (312)
T ss_dssp             CHHHHHHHHC-TTCC
T ss_pred             cHHHHHHhcC-hhhh
Confidence            5799999965 4343

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.81  E-value=9.7e-06  Score=75.69  Aligned_cols=82  Identities=13%  Similarity=0.129  Sum_probs=61.7

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHH-HHhhhhHHhhcccCchhhhccCCCCCchhhhcCCCCccCCCccHHHHHHHhc-C
Q 040497           16 GPGLGDIPESCVACVFMYLTPPEIC-NLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLS-R   93 (295)
Q Consensus        16 ~~~~~~LPe~cia~ils~tsP~d~c-r~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~skKely~~Lc-~   93 (295)
                      +..+..||++.+..||+++.|+|.+ |+++||+.+|..++++.+|.+.+...  .+..... ..++..+-|.+|+.-- .
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~--g~~~~~~-~~~~~~~Wk~~y~~~~~g  124 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE--GLVPEGS-ADEERDHWQQFYFLSKRR  124 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT--TCCCC------CCSCHHHHHHHHHHC
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc--Ccccccc-cCCCCCChhhhheheecc
Confidence            4678999999999999999999999 99999999999999999999987654  1111111 1123456899998743 3


Q ss_pred             CCccCCC
Q 040497           94 PVPFDDG  100 (295)
Q Consensus        94 p~lld~g  100 (295)
                      -+||.+.
T Consensus       125 RNLL~NP  131 (297)
T 2e31_A          125 RNLLRNP  131 (297)
T ss_dssp             CCCSSCS
T ss_pred             cceeecC
Confidence            4666653

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.65  E-value=1.2e-05  Score=75.07  Aligned_cols=49  Identities=20%  Similarity=0.355  Sum_probs=45.1

Q ss_pred             CCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCC
Q 040497           16 GPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLP   64 (295)
Q Consensus        16 ~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP   64 (295)
                      .--|..||++++..|++|++|.|.|++++||+.|+.+++++.+|.+++-
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            3457899999999999999999999999999999999999999997763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.30  E-value=3.6e-05  Score=71.84  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=42.3

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCc-hhhhccCC
Q 040497           19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASS-DSVWENKL   63 (295)
Q Consensus        19 ~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~s-D~vW~~fl   63 (295)
                      |..||++.+..|++|++|+|.|++++||+.++..+++ +.+|.+++
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5679999999999999999999999999999998887 89999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.27  E-value=3.4e-05  Score=72.10  Aligned_cols=48  Identities=13%  Similarity=0.392  Sum_probs=43.9

Q ss_pred             CCCchhH----HHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCC
Q 040497           19 LGDIPES----CVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSN   66 (295)
Q Consensus        19 ~~~LPe~----cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d   66 (295)
                      |..||++    .+..|++|++|.|.|++++||+.|+..++.+.+|.+++..+
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            5679999    99999999999999999999999999999999999876543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.80  E-value=0.00054  Score=61.87  Aligned_cols=48  Identities=21%  Similarity=0.456  Sum_probs=41.8

Q ss_pred             CCCCCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccC
Q 040497           15 MGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENK   62 (295)
Q Consensus        15 ~~~~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~f   62 (295)
                      ....+++||++++..|+++++++|.++++.||+.|+.++.+...|.++
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            467789999999999999999999999999999999998766677754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.08  E-value=0.024  Score=54.90  Aligned_cols=35  Identities=11%  Similarity=0.221  Sum_probs=29.3

Q ss_pred             CCCCchhHHHHHHHhcCC-hHHHHHHhhhhHHhhcc
Q 040497           18 GLGDIPESCVACVFMYLT-PPEICNLARLNRAFRGA   52 (295)
Q Consensus        18 ~~~~LPe~cia~ils~ts-P~d~cr~a~vs~~fr~a   52 (295)
                      .+++||++++.+|++|++ ++|++++|.||+.++.+
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            478999999999999999 99999999999999987

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=91.93  E-value=0.07  Score=51.62  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=31.2

Q ss_pred             CCchhHHHHHHHhcC-ChHHHHHHhhhhHHhhcc
Q 040497           20 GDIPESCVACVFMYL-TPPEICNLARLNRAFRGA   52 (295)
Q Consensus        20 ~~LPe~cia~ils~t-sP~d~cr~a~vs~~fr~a   52 (295)
                      .+||++++.+|++|+ +++|+++++.||+.|+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            479999999999999 899999999999999887

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=83.48  E-value=0.42  Score=37.31  Aligned_cols=63  Identities=17%  Similarity=0.320  Sum_probs=39.3

Q ss_pred             chhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCchhhhcCCCCccCCCccHHHHHHHhc
Q 040497           22 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKEIFALLS   92 (295)
Q Consensus        22 LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~~~~~~~~~~skKely~~Lc   92 (295)
                      .|-+.+.-||-..||....++-.-|+.+  +-++|-+|.+++-.||+.-.      ....-|-+++|++|.
T Consensus        13 ~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~------p~e~esWRelY~rl~   75 (97)
T 4hfx_A           13 VPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER------PEEYESWREMYLRLQ   75 (97)
T ss_dssp             -------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC------CCSSSCHHHHHHHHH
T ss_pred             CcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC------CCCCCCHHHHHHHHH
Confidence            5888889999999999999999999976  67899999999999998431      124468999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 9/39 (23%), Positives = 21/39 (53%)

Query: 21 DIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVW 59
           +P+  +  +F  L  PE+  ++ + + +   AS +S+W
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 21/52 (40%)

Query: 19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDL 70
          +  +P+     V  +L P ++   A+  R +R  A  + +W  K      D 
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDE 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.89
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.11
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.87

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.3e-10  Score=86.00  Aligned_cols=74  Identities=16%  Similarity=0.211  Sum_probs=55.3

Q ss_pred             CCCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCCCchhhhcC-----CCCccCCCccHHHHHHHh
Q 040497           18 GLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDL-----MPPERYLNLSKKEIFALL   91 (295)
Q Consensus        18 ~~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~d~~~i~~~-----~~~~~~~~~skKely~~L   91 (295)
                      -|..||+|++..|+++++|.|+|++|+||+.|+.++++|.+|++.+-.++......     .........+-|++|.+.
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~   96 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQ   96 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHH
Confidence            47889999999999999999999999999999999999999987765443211111     000111234579999874

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.8e-10  Score=72.93  Aligned_cols=41  Identities=22%  Similarity=0.510  Sum_probs=39.7

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhh
Q 040497           19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVW   59 (295)
Q Consensus        19 ~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW   59 (295)
                      ++.||++++..|+++++|+|.||+++||+.|+.+++++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            47899999999999999999999999999999999999998

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=2.1e-07  Score=70.83  Aligned_cols=44  Identities=18%  Similarity=0.357  Sum_probs=39.7

Q ss_pred             CCCchhHHHHHHHhcCChHHHHHHhhhhHHhhcccCch-hhhccC
Q 040497           19 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSD-SVWENK   62 (295)
Q Consensus        19 ~~~LPe~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD-~vW~~f   62 (295)
                      |.+||++.+..|+++++|.|.+++|+||+.|+..+++| .+|.+.
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            46799999999999999999999999999999887665 789875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=1.7e-06  Score=67.30  Aligned_cols=47  Identities=13%  Similarity=0.415  Sum_probs=42.0

Q ss_pred             CCCchh----HHHHHHHhcCChHHHHHHhhhhHHhhcccCchhhhccCCCC
Q 040497           19 LGDIPE----SCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPS   65 (295)
Q Consensus        19 ~~~LPe----~cia~ils~tsP~d~cr~a~vs~~fr~aa~sD~vW~~flP~   65 (295)
                      |..||.    |.+..|+||++|.|.|++|+||+.|+..++++.+|.++.-.
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            345775    99999999999999999999999999999999999987643