Citrus Sinensis ID: 040499

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKPFLKS
Secondary Structure (PSIPRED)
ccccccccccHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccHHHHHHccccEEEcccHHHHHHEEEHHHcccccccccccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mldargtvsyiapevfcrnfggishksdvygFGMTVLELVGVrnntasgvthtsstemyfpdwfykllepgedlkrhglvteeEEVIVRKMIIVRLWCiqtnpsdrssMSKAVEMLEGGlealqvppkpflks
Flexible Loop (DISEMBL)
mldargtvsyiapevfcrnfggiSHKSDVYGFGMTVLELVGVRNNTASGvthtsstemyFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIqtnpsdrssMSKAVEMLEGglealqvppkpflks
Low Complexity Region (SEG)
MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKPFLKS
Disordered region (IsUnstruct)
******TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQ*********************************
Disordered Region (DISOPRED)
MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR**T***********MYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKP****
Disordered Region (DISEMBL)
MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKPFLKS
Disordered Region (DISPRO)
*LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS*V***SSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKPFLK*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKPFLKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q9FID5	806	Probable receptor-like pr	no	no	0.969	0.160	0.530	7e-37
Q9FID6	813	Probable receptor-like pr	no	no	0.954	0.156	0.538	2e-35
Q3ECH2	892	Probable receptor-like pr	no	no	0.992	0.147	0.485	3e-33
Q9FLV4	872	G-type lectin S-receptor-	no	no	0.887	0.135	0.403	8e-16
Q8RWZ5	821	G-type lectin S-receptor-	no	no	0.917	0.148	0.388	2e-14
Q39203	797	G-type lectin S-receptor-	no	no	0.819	0.136	0.379	6e-12
O64477	828	G-type lectin S-receptor-	no	no	0.894	0.143	0.362	8e-12
C0LGH3	1033	Probable LRR receptor-lik	no	no	0.887	0.114	0.373	2e-11
Q9ASQ6	1019	Probable LRR receptor-lik	no	no	0.872	0.113	0.341	4e-11
Q9XID3	829	G-type lectin S-receptor-	no	no	0.842	0.135	0.382	5e-11

>sp|Q9FID5|Y5393_ARATH Probable receptor-like protein kinase At5g39030 OS=Arabidopsis thaliana GN=At5g39030 PE=2 SV=1

 Score =  152 bits (383), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 69/130 (53%), Positives = 94/130 (72%), Gaps = 1/130 (0%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           ++D RGT+ YIAPEVF R +G +SHKSDVY FGM V++++G R+        ++++  YF
Sbjct: 655 LMDTRGTIGYIAPEVFSRMYGRVSHKSDVYSFGMLVIDMIGARSKEIVETVDSAASSTYF 714

Query: 61  PDWFYKLLEPGEDLKRHG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
           PDW YK LE GE     G  +T+EE+ I +KMI+V LWCIQ  PSDR SM++ VEM+EG 
Sbjct: 715 PDWIYKDLEDGEQTWIFGDEITKEEKEIAKKMIVVGLWCIQPCPSDRPSMNRVVEMMEGS 774

Query: 120 LEALQVPPKP 129
           L+AL++PPKP
Sbjct: 775 LDALEIPPKP 784

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9FID6|Y5392_ARATH Probable receptor-like protein kinase At5g39020 OS=Arabidopsis thaliana GN=At5g39020 PE=2 SV=1

 Score =  147 bits (370), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 92/130 (70%), Gaps = 3/130 (2%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           ++D RGT+ YIAPEV  R +GGISHKSDVY +GM VL+++G RN   +  T  + +  YF
Sbjct: 653 LIDTRGTIGYIAPEVVSRMYGGISHKSDVYSYGMLVLDMIGARNKVET--TTCNGSTAYF 710

Query: 61  PDWFYKLLEPGEDLKRHG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
           PDW YK LE G+     G  + EE+  IV+KMI+V LWCI+  PSDR  M+K VEM+EG 
Sbjct: 711 PDWIYKDLENGDQTWIIGDEINEEDNKIVKKMILVSLWCIRPCPSDRPPMNKVVEMIEGS 770

Query: 120 LEALQVPPKP 129
           L+AL++PPKP
Sbjct: 771 LDALELPPKP 780

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q3ECH2|Y1670_ARATH Probable receptor-like protein kinase At1g67000 OS=Arabidopsis thaliana GN=At1g67000 PE=2 SV=2

 Score =  140 bits (352), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/142 (48%), Positives = 94/142 (66%), Gaps = 10/142 (7%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTA-SGVTHTSSTEMY 59
           +LD RGT+ YIAPE+  R +G +SHKSDVY +GM VLE++G R        + +  + +Y
Sbjct: 714 LLDTRGTIGYIAPEMISRLYGSVSHKSDVYSYGMLVLEMIGARKKERFDQNSRSDGSSIY 773

Query: 60  FPDWFYKLLEPG-----EDLKRHGLV----TEEEEVIVRKMIIVRLWCIQTNPSDRSSMS 110
           FP+W YK LE       E  +  GL+    + EEE I RKM +V LWCIQ++PSDR  M+
Sbjct: 774 FPEWIYKDLEKANIKDIEKTENGGLIENGISSEEEEIARKMTLVGLWCIQSSPSDRPPMN 833

Query: 111 KAVEMLEGGLEALQVPPKPFLK 132
           K VEM+EG L+AL+VPP+P L+
Sbjct: 834 KVVEMMEGSLDALEVPPRPVLQ 855

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana GN=At5g24080 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 11/129 (8%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           RGT  Y+APE        I+ K+DVY +GM +LE+VG R N         + + ++P W 
Sbjct: 693 RGTRGYLAPEWVSNR--PITVKADVYSYGMLLLEIVGGRRNLDMSY---DAEDFFYPGWA 747

Query: 65  YKLLEPGEDLK----RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
           YK L  G  LK    R   V EEEEV+  K + V  WCIQ   S R SM + V++LEG  
Sbjct: 748 YKELTNGTSLKAVDKRLQGVAEEEEVV--KALKVAFWCIQDEVSMRPSMGEVVKLLEGTS 805

Query: 121 EALQVPPKP 129
           + + +PP P
Sbjct: 806 DEINLPPMP 814

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 12/134 (8%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           RGT  Y+APE +  N+  IS KSDVY +GM +LEL+G R N     T   S + +FP + 
Sbjct: 655 RGTRGYLAPE-WITNYA-ISEKSDVYSYGMVLLELIGGRKNYDPSET---SEKCHFPSFA 709

Query: 65  YKLLEPGE-----DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
           +K +E G+     D K   +   +E V  ++ +   LWCIQ +   R SMSK V+MLEG 
Sbjct: 710 FKKMEEGKLMDIVDGKMKNVDVTDERV--QRAMKTALWCIQEDMQTRPSMSKVVQMLEGV 767

Query: 120 LEALQVPPKPFLKS 133
              +Q P    + S
Sbjct: 768 FPVVQPPSSSTMGS 781

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q39203|SD22_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 OS=Arabidopsis thaliana GN=SD22 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 64/124 (51%), Gaps = 15/124 (12%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR-----NNTASGVTHTSSTEMY 59
           RGT  Y+APE    +   I+ K+DVY FGMT+LEL+G R     N+   G   T   + +
Sbjct: 622 RGTWGYVAPEWI--SGLPITTKADVYSFGMTLLELIGGRRNVIVNSDTLGEKETEPEKWF 679

Query: 60  FPDWFYKLLEPGE-----DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
           FP W  + +  G      D + +G    EE   V +M  V +WCIQ N   R +M   V+
Sbjct: 680 FPPWAAREIIQGNVDSVVDSRLNGEYNTEE---VTRMATVAIWCIQDNEEIRPAMGTVVK 736

Query: 115 MLEG 118
           MLEG
Sbjct: 737 MLEG 740

Serine/threonine-protein kinase.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 OS=Arabidopsis thaliana GN=At2g19130 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 67/135 (49%), Gaps = 16/135 (11%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           RGT  Y+APE    +   I+ K+DVY +GM + ELV  R NT       +    +FP W 
Sbjct: 656 RGTRGYLAPEWI--SGVAITAKADVYSYGMMLFELVSGRRNTEQ---SENEKVRFFPSWA 710

Query: 65  YKLLEPGEDLKR------HGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
             +L    D++        G   + EEV   +   V  WCIQ   S R +MS+ V++LEG
Sbjct: 711 ATILTKDGDIRSLVDPRLEGDAVDIEEVT--RACKVACWCIQDEESHRPAMSQVVQILEG 768

Query: 119 GLEALQVPPKPFLKS 133
            LE   V P PF +S
Sbjct: 769 VLE---VNPPPFPRS 780

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGH3|Y5614_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 8/126 (6%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT+ Y+APE   R  G ++ K+DVY FG+  LELV  R N+   +      + Y  +W +
Sbjct: 855 GTIGYLAPEYAMR--GHLTEKTDVYAFGVVALELVSGRPNSDENL---EDEKRYLLEWAW 909

Query: 66  KLLEPGED--LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL 123
            L E G +  L  H L TE      ++MI + L C QT+ + R  MS+ V ML G +E  
Sbjct: 910 NLHEKGREVELIDHQL-TEFNMEEGKRMIGIALLCTQTSHALRPPMSRVVAMLSGDVEVS 968

Query: 124 QVPPKP 129
            V  KP
Sbjct: 969 DVTSKP 974

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ASQ6|Y1972_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g29720 OS=Arabidopsis thaliana GN=RFK1 PE=2 SV=3

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 13/129 (10%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT+ Y+APE     +G ++ K+DVY FG+  +E+V  ++NT       ++  +   +W  
Sbjct: 835 GTIGYMAPEYAL--WGQLTEKADVYSFGVVAMEIVSGKSNTKQ---QGNADSVSLINWAL 889

Query: 66  KLLEPGE-----DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
            L + G+     D    G     E V   +MI V L C  ++PS R +MS+AV+MLEG +
Sbjct: 890 TLQQTGDILEIVDRMLEGEFNRSEAV---RMIKVALVCTNSSPSLRPTMSEAVKMLEGEI 946

Query: 121 EALQVPPKP 129
           E  QV   P
Sbjct: 947 EITQVMSDP 955

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 61/123 (49%), Gaps = 11/123 (8%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV-GVRNNTASGVTHTSSTEMY 59
           M   RGT  Y+APE +  N   I+ KSDVY +GM +LELV G RN   S  T+       
Sbjct: 642 MSSVRGTRGYLAPE-WLANLP-ITSKSDVYSYGMVLLELVSGKRNFDVSEKTN----HKK 695

Query: 60  FPDWFYKLLEPGEDLKRHGLVTEEEEVI----VRKMIIVRLWCIQTNPSDRSSMSKAVEM 115
           F  W Y+  E G           E++ +    V +M+    WCIQ  P  R +M K V+M
Sbjct: 696 FSIWAYEEFEKGNTKAILDTRLSEDQTVDMEQVMRMVKTSFWCIQEQPLQRPTMGKVVQM 755

Query: 116 LEG 118
           LEG
Sbjct: 756 LEG 758

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
225452094	858	PREDICTED: probable receptor-like protei	0.969	0.150	0.618	4e-44
297734241	667	unnamed protein product [Vitis vinifera]	0.984	0.196	0.646	3e-43
359491461	1963	PREDICTED: uncharacterized protein LOC10	0.984	0.066	0.646	5e-43
147769927	1001	hypothetical protein VITISV_010117 [Viti	0.984	0.130	0.639	2e-42
42563102	799	putative receptor serine/threonine kinas	0.984	0.163	0.624	5e-42
2194117	676	Strong similarity to Arabidopsis recepto	0.984	0.193	0.624	6e-42
147795963	624	hypothetical protein VITISV_039936 [Viti	0.984	0.209	0.631	1e-41
359472674	637	PREDICTED: probable receptor-like protei	0.984	0.205	0.631	1e-41
145839451	627	receptor-like protein kinase [Capsicum a	0.984	0.208	0.593	3e-41
118486638	145	unknown [Populus trichocarpa]	0.984	0.903	0.616	6e-41

>gi|225452094|ref|XP_002280747.1| PREDICTED: probable receptor-like protein kinase At1g67000-like [Vitis vinifera]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 99/131 (75%), Gaps = 2/131 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           M  ARGT  YIAPEVFCRNFGG+SHKSDVY +GM V E++G R N  + V+HTS  ++YF
Sbjct: 716 MAHARGTAGYIAPEVFCRNFGGVSHKSDVYSYGMLVFEMIGGRKNIDAQVSHTS--QIYF 773

Query: 61  PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
           P W YK L+PGEDL  H +  EEEE   RKM++V LWCIQ NPSDR S+ K VEMLEG L
Sbjct: 774 PTWIYKQLQPGEDLILHSITNEEEEETARKMVLVSLWCIQLNPSDRPSIDKVVEMLEGSL 833

Query: 121 EALQVPPKPFL 131
           ++L++PP PF+
Sbjct: 834 QSLEIPPNPFM 844

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734241|emb|CBI15488.3| unnamed protein product [Vitis vinifera]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 97/133 (72%), Gaps = 2/133 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           M  ARGT+ Y+APEVFCRNFG +SHKSDVY +GM VLE+VG R N    V HTS  E YF
Sbjct: 520 MSAARGTIGYVAPEVFCRNFGQVSHKSDVYSYGMMVLEMVGGRQNVNGTVGHTS--ETYF 577

Query: 61  PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
           P W YK LE  EDL   G+  +EE  I RKMI+V LWCIQTNPS R  MSK +EMLEG +
Sbjct: 578 PHWIYKHLEQQEDLGLEGIENKEENEITRKMIVVGLWCIQTNPSHRPCMSKVIEMLEGSI 637

Query: 121 EALQVPPKPFLKS 133
           EALQ+PPKPFL S
Sbjct: 638 EALQIPPKPFLSS 650

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491461|ref|XP_002277015.2| PREDICTED: uncharacterized protein LOC100261246 [Vitis vinifera]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 97/133 (72%), Gaps = 2/133 (1%)

Query: 1    MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
            M  ARGT+ Y+APEVFCRNFG +SHKSDVY +GM VLE+VG R N    V HTS  E YF
Sbjct: 1816 MSAARGTIGYVAPEVFCRNFGQVSHKSDVYSYGMMVLEMVGGRQNVNGTVGHTS--ETYF 1873

Query: 61   PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
            P W YK LE  EDL   G+  +EE  I RKMI+V LWCIQTNPS R  MSK +EMLEG +
Sbjct: 1874 PHWIYKHLEQQEDLGLEGIENKEENEITRKMIVVGLWCIQTNPSHRPCMSKVIEMLEGSI 1933

Query: 121  EALQVPPKPFLKS 133
            EALQ+PPKPFL S
Sbjct: 1934 EALQIPPKPFLSS 1946

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769927|emb|CAN76446.1| hypothetical protein VITISV_010117 [Vitis vinifera]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/133 (63%), Positives = 97/133 (72%), Gaps = 2/133 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           M  ARGT  YIAPEVFCRNFG +S KSDVY +GM VLE+VG R NT  G+ HTS  E+YF
Sbjct: 857 MSGARGTAGYIAPEVFCRNFGDVSPKSDVYSYGMMVLEMVGGRKNTDDGINHTS--EIYF 914

Query: 61  PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
           P W YK LE  E+L   G + EEE    RKMIIV LWCIQTNPS+R  M+  V+MLEG L
Sbjct: 915 PHWIYKRLELDEELGLQGFMNEEERTSARKMIIVSLWCIQTNPSNRPPMNGVVDMLEGSL 974

Query: 121 EALQVPPKPFLKS 133
           E+LQ+PPKPFL S
Sbjct: 975 ESLQIPPKPFLYS 987

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42563102|ref|NP_177182.2| putative receptor serine/threonine kinase [Arabidopsis thaliana] gi|332196916|gb|AEE35037.1| putative receptor serine/threonine kinase [Arabidopsis thaliana]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 83/133 (62%), Positives = 99/133 (74%), Gaps = 2/133 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           ML ARGT+ YIAPEVF +NFGG+SHKSDVY +GM VLE++G RN   +    +S+T MYF
Sbjct: 617 MLHARGTIGYIAPEVFSQNFGGVSHKSDVYSYGMVVLEMIGARNIGRAQNAGSSNTSMYF 676

Query: 61  PDWFYKLLEPGEDLK--RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
           PDW YK LE GE +      +  EE+E IV+KM++V LWCIQTNP DR  MSK VEMLEG
Sbjct: 677 PDWIYKDLEKGEIMSFLADQITEEEDEKIVKKMVLVGLWCIQTNPYDRPPMSKVVEMLEG 736

Query: 119 GLEALQVPPKPFL 131
            LEALQ+PPKP L
Sbjct: 737 SLEALQIPPKPLL 749

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2194117|gb|AAB61092.1| Strong similarity to Arabidopsis receptor protein kinase PR5K (gb|ATU48698) [Arabidopsis thaliana]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 83/133 (62%), Positives = 99/133 (74%), Gaps = 2/133 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           ML ARGT+ YIAPEVF +NFGG+SHKSDVY +GM VLE++G RN   +    +S+T MYF
Sbjct: 494 MLHARGTIGYIAPEVFSQNFGGVSHKSDVYSYGMVVLEMIGARNIGRAQNAGSSNTSMYF 553

Query: 61  PDWFYKLLEPGEDLK--RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
           PDW YK LE GE +      +  EE+E IV+KM++V LWCIQTNP DR  MSK VEMLEG
Sbjct: 554 PDWIYKDLEKGEIMSFLADQITEEEDEKIVKKMVLVGLWCIQTNPYDRPPMSKVVEMLEG 613

Query: 119 GLEALQVPPKPFL 131
            LEALQ+PPKP L
Sbjct: 614 SLEALQIPPKPLL 626

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147795963|emb|CAN69599.1| hypothetical protein VITISV_039936 [Vitis vinifera]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 96/133 (72%), Gaps = 2/133 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           M  ARGT  YIAPEVFCRNFG +S KSDVY +GM VLE+VG R N   G+ HTS  E+YF
Sbjct: 480 MSGARGTAGYIAPEVFCRNFGDVSPKSDVYSYGMMVLEMVGGRKNIDDGINHTS--EIYF 537

Query: 61  PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
           P W YK LE  E+L   G + EEE    RKMIIV LWCIQTNPS+R  M+  V+MLEG L
Sbjct: 538 PHWIYKRLELDEELGLQGFMNEEERTSARKMIIVSLWCIQTNPSNRPPMNGVVDMLEGSL 597

Query: 121 EALQVPPKPFLKS 133
           E+LQ+PPKPFL S
Sbjct: 598 ESLQIPPKPFLYS 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472674|ref|XP_002279652.2| PREDICTED: probable receptor-like protein kinase At1g67000-like [Vitis vinifera]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 96/133 (72%), Gaps = 2/133 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           M  ARGT  YIAPEVFCRNFG +S KSDVY +GM VLE+VG R N   G+ HTS  E+YF
Sbjct: 493 MSGARGTAGYIAPEVFCRNFGDVSPKSDVYSYGMMVLEMVGGRKNIDDGINHTS--EIYF 550

Query: 61  PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
           P W YK LE  E+L   G + EEE    RKMIIV LWCIQTNPS+R  M+  V+MLEG L
Sbjct: 551 PHWIYKRLELDEELGLQGFMNEEERTSARKMIIVSLWCIQTNPSNRPPMNGVVDMLEGSL 610

Query: 121 EALQVPPKPFLKS 133
           E+LQ+PPKPFL S
Sbjct: 611 ESLQIPPKPFLYS 623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145839451|gb|ABP96804.1| receptor-like protein kinase [Capsicum annuum]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/133 (59%), Positives = 99/133 (74%), Gaps = 2/133 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           ML ARGT+ YIAPE+ CRN GG+SHKSD Y +GM VLE++G R N  +G   TS  E+YF
Sbjct: 476 MLGARGTIGYIAPEIVCRNLGGVSHKSDAYSYGMMVLEMIGGRKNVDAGADRTS--EIYF 533

Query: 61  PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
           P W Y+ +E  EDL+  G++ EEE    RKM+I  LWCIQT+PS+R SMSK VEMLEG L
Sbjct: 534 PHWLYQRIELDEDLQLVGIMNEEENECARKMVIASLWCIQTDPSNRPSMSKVVEMLEGKL 593

Query: 121 EALQVPPKPFLKS 133
           ++LQ+PPKP+L S
Sbjct: 594 DSLQIPPKPYLYS 606

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486638|gb|ABK95156.1| unknown [Populus trichocarpa]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 82/133 (61%), Positives = 99/133 (74%), Gaps = 2/133 (1%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           ML ARGT  YIAPEVFCRNFGG+SHKSDVY +GM VLE++G R N   GV +TS  E+YF
Sbjct: 1   MLGARGTAGYIAPEVFCRNFGGVSHKSDVYSYGMLVLEMIGGRKNFRVGVDNTS--EIYF 58

Query: 61  PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
           P W YK LE GE+L+  G   E EE   RKMI+  LWCIQT+PS+R  MS+ V+ML+G L
Sbjct: 59  PHWIYKRLEIGEELQLRGAGNEVEEENARKMILASLWCIQTDPSNRPPMSRVVDMLQGSL 118

Query: 121 EALQVPPKPFLKS 133
           E+L +PPKP+L S
Sbjct: 119 ESLPIPPKPYLSS 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2020583	799	AT1G70250 [Arabidopsis thalian	0.984	0.163	0.639	6.1e-40
TAIR|locus:2141862	853	AT4G18250 [Arabidopsis thalian	0.984	0.153	0.6	6.3e-37
TAIR|locus:2176737	665	PR5K "PR5-like receptor kinase	1.0	0.2	0.552	1.1e-35
TAIR|locus:2177152	806	AT5G39030 [Arabidopsis thalian	0.969	0.160	0.530	3.5e-34
TAIR|locus:2204480	666	AT1G66910 [Arabidopsis thalian	0.992	0.198	0.503	1.7e-33
TAIR|locus:2176697	588	AT5G38240 [Arabidopsis thalian	0.977	0.221	0.541	2e-33
TAIR|locus:2176707	579	AT5G38250 [Arabidopsis thalian	0.984	0.226	0.530	3e-33
TAIR|locus:2176717	638	AT5G38260 [Arabidopsis thalian	0.969	0.202	0.507	4e-33
TAIR|locus:2019688	674	AT1G66930 [Arabidopsis thalian	0.992	0.195	0.496	5e-33
TAIR|locus:2177142	813	AT5G39020 [Arabidopsis thalian	0.954	0.156	0.553	9e-33

TAIR|locus:2020583 AT1G70250 [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 6.1e-40, P = 6.1e-40
 Identities = 85/133 (63%), Positives = 100/133 (75%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             ML ARGT+ YIAPEVF +NFGG+SHKSDVY +GM VLE++G RN   +    +S+T MYF
Sbjct:   617 MLHARGTIGYIAPEVFSQNFGGVSHKSDVYSYGMVVLEMIGARNIGRAQNAGSSNTSMYF 676

Query:    61 PDWFYKLLEPGEDLK-RHGLVTEEE-EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
             PDW YK LE GE +      +TEEE E IV+KM++V LWCIQTNP DR  MSK VEMLEG
Sbjct:   677 PDWIYKDLEKGEIMSFLADQITEEEDEKIVKKMVLVGLWCIQTNPYDRPPMSKVVEMLEG 736

Query:   119 GLEALQVPPKPFL 131
              LEALQ+PPKP L
Sbjct:   737 SLEALQIPPKPLL 749

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2141862 AT4G18250 [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 81/135 (60%), Positives = 96/135 (71%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             MLDARGTV YIAPE+F +N+GG+SHKSDVY +GM VLE++G         + T  + MYF
Sbjct:   678 MLDARGTVGYIAPEMFSKNYGGVSHKSDVYSYGMVVLEMIGATKREEVETSATDKSSMYF 737

Query:    61 PDWFYKLLEPGED---LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
             PDW Y+ LE  E    L+ H +  EEEE IV++M +V LWCIQTNPSDR  M K VEMLE
Sbjct:   738 PDWVYEDLERKETMRLLEDHIIEEEEEEKIVKRMTLVGLWCIQTNPSDRPPMRKVVEMLE 797

Query:   118 GG-LEALQVPPKPFL 131
             G  LEALQVPPKP L
Sbjct:   798 GSRLEALQVPPKPLL 812

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2176737 PR5K "PR5-like receptor kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 74/134 (55%), Positives = 94/134 (70%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             ML  RGT  YIAPE+F +NFG +SHKSDVY +GM VLE++G +N      + +++  MYF
Sbjct:   489 MLHMRGTFGYIAPEMFSKNFGAVSHKSDVYSYGMVVLEMIGAKNIEKVEYSGSNNGSMYF 548

Query:    61 PDWFYKLLEPGEDLKRHG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
             P+W YK  E GE  +  G  +T+EEE I +K+++V LWCIQ NPSDR  M K +EMLEG 
Sbjct:   549 PEWVYKDFEKGEITRIFGDSITDEEEKIAKKLVLVALWCIQMNPSDRPPMIKVIEMLEGN 608

Query:   120 LEALQVPPKPFLKS 133
             LEALQVPP P L S
Sbjct:   609 LEALQVPPNPLLFS 622

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0009620 "response to fungus" evidence=ISS

TAIR|locus:2177152 AT5G39030 [Arabidopsis thaliana (taxid:3702)]

 Score = 380 (138.8 bits), Expect = 3.5e-34, P = 3.5e-34
 Identities = 69/130 (53%), Positives = 94/130 (72%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             ++D RGT+ YIAPEVF R +G +SHKSDVY FGM V++++G R+        ++++  YF
Sbjct:   655 LMDTRGTIGYIAPEVFSRMYGRVSHKSDVYSFGMLVIDMIGARSKEIVETVDSAASSTYF 714

Query:    61 PDWFYKLLEPGEDLKRHG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
             PDW YK LE GE     G  +T+EE+ I +KMI+V LWCIQ  PSDR SM++ VEM+EG 
Sbjct:   715 PDWIYKDLEDGEQTWIFGDEITKEEKEIAKKMIVVGLWCIQPCPSDRPSMNRVVEMMEGS 774

Query:   120 LEALQVPPKP 129
             L+AL++PPKP
Sbjct:   775 LDALEIPPKP 784

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2204480 AT1G66910 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 1.7e-33, P = 1.7e-33
 Identities = 67/133 (50%), Positives = 97/133 (72%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             ++D RGT+ YIAPEVF R +G +SHKSDVY +GM VL+++G RN T++  T +S++ MYF
Sbjct:   505 LMDTRGTIGYIAPEVFSRVYGRVSHKSDVYSYGMLVLDIIGARNKTSTEDTTSSTSSMYF 564

Query:    61 PDWFYKLLEPGEDLKR-HGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
             P+W Y+ LE   + K     ++ EE+ I +KM +V LWCIQ  P DR +M++ VEM+EG 
Sbjct:   565 PEWIYRDLEKAHNGKSIETAISNEEDEIAKKMTLVGLWCIQPWPLDRPAMNRVVEMMEGN 624

Query:   120 LEALQVPPKPFLK 132
             L+AL+VPP+P L+
Sbjct:   625 LDALEVPPRPVLQ 637

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2176697 AT5G38240 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 72/133 (54%), Positives = 92/133 (69%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             +LD RGT+ YIAPE+F R +G +SHKSDVY +GM VLE+ G RN        ++++  YF
Sbjct:   432 LLDTRGTIGYIAPELFSRVYGNVSHKSDVYSYGMLVLEMTGARNKERVQNADSNNSSAYF 491

Query:    61 PDWFYKLLEPGEDLK--RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
             PDW +K LE G+ +K    GL T EEE I +KMI+V LWCIQ  PSDR SM+K V M+EG
Sbjct:   492 PDWIFKDLENGDYVKLLADGL-TREEEDIAKKMILVGLWCIQFRPSDRPSMNKVVGMMEG 550

Query:   119 GLEALQVPPKPFL 131
              L++L  PPKP L
Sbjct:   551 NLDSLDPPPKPLL 563

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2176707 AT5G38250 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 3.0e-33, P = 3.0e-33
 Identities = 70/132 (53%), Positives = 91/132 (68%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             +LD RGT+ YIAPE+F R +G +SHKSDVY +GM VLE++G RN         +++  YF
Sbjct:   424 LLDTRGTIGYIAPELFSRMYGSVSHKSDVYSYGMLVLEMIGARNKERVQNADPNNSSAYF 483

Query:    61 PDWFYKLLEPGEDLKRHGL-VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
             PDW YK LE  ++ +  G  +T EEE   +KMI+V LWCIQ  PSDR SM+K VEM+EG 
Sbjct:   484 PDWIYKDLENFDNTRLLGDGLTREEEKNAKKMILVGLWCIQFRPSDRPSMNKVVEMMEGS 543

Query:   120 LEALQVPPKPFL 131
             L++L  PPKP L
Sbjct:   544 LDSLDPPPKPLL 555

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2176717 AT5G38260 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 4.0e-33, P = 4.0e-33
 Identities = 66/130 (50%), Positives = 92/130 (70%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             +LDARGT+ YIAPEVF   +G +SHKSDVY +GM VLE++G +N        ++S+  YF
Sbjct:   478 LLDARGTIGYIAPEVFSGMYGRVSHKSDVYSYGMLVLEMIGAKNKEIEETAASNSSSAYF 537

Query:    61 PDWFYKLLEPGEDLKRHG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
             PDW YK LE GED  + G  ++ E++ + +KM +V LWCIQ +P +R  M++ VEM+EG 
Sbjct:   538 PDWIYKNLENGEDTWKFGDEISREDKEVAKKMTLVGLWCIQPSPLNRPPMNRIVEMMEGS 597

Query:   120 LEALQVPPKP 129
             L+ L+VPPKP
Sbjct:   598 LDVLEVPPKP 607

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019688 AT1G66930 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 5.0e-33, P = 5.0e-33
 Identities = 67/135 (49%), Positives = 94/135 (69%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             ++D RGT+ YIAPE+  R +G +SHKSDVY +GM V E++G R     G    + + MYF
Sbjct:   504 LMDTRGTIGYIAPEMISRVYGSVSHKSDVYSYGMLVFEMIGARKKERFGQNSANGSSMYF 563

Query:    61 PDWFYKLLEPGE--DLKRHGL-VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
             P+W YK LE  +  DL+   + ++ EEE I +KM +V LWCIQ++PSDR  M+K VEM+E
Sbjct:   564 PEWIYKDLEKADNGDLEHIEIGISSEEEEIAKKMTLVGLWCIQSSPSDRPPMNKVVEMME 623

Query:   118 GGLEALQVPPKPFLK 132
             G L+AL+VPP+P L+
Sbjct:   624 GSLDALEVPPRPVLQ 638

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2177142 AT5G39020 [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.0e-33, P = 9.0e-33
 Identities = 72/130 (55%), Positives = 92/130 (70%)

Query:     1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
             ++D RGT+ YIAPEV  R +GGISHKSDVY +GM VL+++G RN   +  T   ST  YF
Sbjct:   653 LIDTRGTIGYIAPEVVSRMYGGISHKSDVYSYGMLVLDMIGARNKVET-TTCNGSTA-YF 710

Query:    61 PDWFYKLLEPGEDLKRHG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
             PDW YK LE G+     G  + EE+  IV+KMI+V LWCI+  PSDR  M+K VEM+EG 
Sbjct:   711 PDWIYKDLENGDQTWIIGDEINEEDNKIVKKMILVSLWCIRPCPSDRPPMNKVVEMIEGS 770

Query:   120 LEALQVPPKP 129
             L+AL++PPKP
Sbjct:   771 LDALELPPKP 780

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017722001 SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (647 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.001
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	0.002
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	0.002
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	0.002
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	0.003

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLEL 39
            GT +Y+APEV     G  S KSD++  G+ + EL
Sbjct: 154 VGTPAYMAPEVL-LGKGYYSEKSDIWSLGVILYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 20/121 (16%)

Query: 9   SYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNT--ASGVTHT-------SSTEMY 59
           +Y+APE   R    I+ KSD+YGFG+ ++EL+  ++      GV  +         ++ +
Sbjct: 843 AYVAPET--RETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCH 900

Query: 60  FPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
              W    ++P   ++    V + E  IV  M +  L C  T+P+ R   +  ++ LE  
Sbjct: 901 LDMW----IDPS--IRGDVSVNQNE--IVEVMNLA-LHCTATDPTARPCANDVLKTLESA 951

Query: 120 L 120
            
Sbjct: 952 S 952

Length = 968

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 18/109 (16%)

Query: 8   VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKL 67
           + + APE  C N+G  S KSDV+ +G+T+ E           +       M         
Sbjct: 162 LKWYAPE--CINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGAEVIAM--------- 210

Query: 68  LEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEML 116
           LE GE L R     +E   I+         C +  P DR + S+     
Sbjct: 211 LESGERLPRPEECPQEIYSIMLS-------CWKYRPEDRPTFSELESTF 252

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 28/114 (24%)

Query: 8   VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW---- 63
           + ++APE      G  + KSDV+ FG+ + E+              +  E  +P      
Sbjct: 168 IKWMAPESL--KDGKFTSKSDVWSFGVLLWEIF-------------TLGEQPYPGMSNEE 212

Query: 64  FYKLLEPGEDLKRHGLVTEE-EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEML 116
             +LLE G  L R     +E  E++++        C   +P DR + S+ VE L
Sbjct: 213 VLELLEDGYRLPRPENCPDELYELMLQ--------CWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLEL 39
           RGT  ++APEV  R        +D++  G TV+E+
Sbjct: 164 RGTPYWMAPEV-IRG-EEYGRAADIWSLGCTVIEM 196

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 24/117 (20%)

Query: 3   DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPD 62
             +  + ++APE      G  + KSDV+ FG+ + E+              +  E  +P 
Sbjct: 162 GGKLPIRWMAPESL--KEGKFTSKSDVWSFGVLLWEI-------------FTLGEQPYPG 206

Query: 63  WFYKLLEPGEDLKRH---GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEML 116
                    E++  +   G    +      ++  + L C   +P DR + S+ VE+L
Sbjct: 207 M------SNEEVLEYLKNGYRLPQPPNCPPELYDLMLQCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV 40
           GT  Y+APEV      G   K DV+  G+ + EL+
Sbjct: 160 GTPWYMAPEV-LLGGNGYGPKVDVWSLGVILYELL 193

Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.86
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.85
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.85
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.84
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.83
KOG0578	550	consensus p21-activated serine/threonine protein k	99.83
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.83
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.8
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.79
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.78
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.78
PHA02988	283	hypothetical protein; Provisional	99.78
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.77
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.76
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.74
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.74
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.73
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.72
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.72
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.71
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.71
KOG0198	313	consensus MEKK and related serine/threonine protei	99.71
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.71
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.69
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.69
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.69
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.68
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.68
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.68
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.68
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.67
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.67
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.67
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.67
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.67
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.67
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.66
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.66
PTZ00283	496	serine/threonine protein kinase; Provisional	99.66
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.66
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.66
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.66
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.66
KOG0589	426	consensus Serine/threonine protein kinase [General	99.66
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.66
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.65
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.65
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.65
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.65
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.65
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.65
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.65
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.64
PTZ00284	467	protein kinase; Provisional	99.64
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.64
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.64
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.64
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.64
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.64
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.63
PTZ00267	478	NIMA-related protein kinase; Provisional	99.63
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.63
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.63
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.63
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.63
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.63
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.63
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.62
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.62
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.62
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.62
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.62
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.62
KOG0610	459	consensus Putative serine/threonine protein kinase	99.62
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.62
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.62
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.62
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.62
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.62
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.62
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.61
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.61
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.61
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.61
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.61
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.61
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.61
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.61
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.61
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.61
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.61
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.6
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.6
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.6
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.6
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.6
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.6
PHA02882	294	putative serine/threonine kinase; Provisional	99.6
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.6
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.6
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.6
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.6
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.6
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.6
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.6
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.59
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.59
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.59
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.59
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.59
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.59
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.59
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.59
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.59
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.59
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.59
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.59
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.58
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.58
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.58
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.58
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.58
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.58
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.58
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.58
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.58
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.58
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.58
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.58
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.58
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.58
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.58
PHA03212	391	serine/threonine kinase US3; Provisional	99.58
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.58
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.57
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.57
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.57
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.57
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.57
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.57
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.57
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.57
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.56
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.56
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.56
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.56
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.56
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.56
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.56
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.56
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.56
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.56
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.56
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.55
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.55
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.55
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.55
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.55
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.55
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.55
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.55
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.55
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.55
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.55
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.55
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.55
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.55
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.55
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.55
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.55
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.55
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.55
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.55
PHA03209	357	serine/threonine kinase US3; Provisional	99.54
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.54
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.54
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.54
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.54
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.54
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.54
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.54
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.54
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.54
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.54
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.54
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.53
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.53
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.53
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.53
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.53
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.53
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.53
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.53
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.52
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.52
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.52
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.52
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.52
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.52
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.52
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.52
PHA03211	461	serine/threonine kinase US3; Provisional	99.52
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.52
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.52
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.52
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.51
PTZ00036	440	glycogen synthase kinase; Provisional	99.51
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.51
KOG3653	534	consensus Transforming growth factor beta/activin	99.51
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.51
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.51
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.51
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.51
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.51
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.51
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.51
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.51
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.51
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.5
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.5
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.5
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.5
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.5
PHA03207	392	serine/threonine kinase US3; Provisional	99.5
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.5
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.5
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.49
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.49
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.49
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.49
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.49
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.49
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.49
PLN00181	793	protein SPA1-RELATED; Provisional	99.49
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.49
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.49
KOG0605	550	consensus NDR and related serine/threonine kinases	99.49
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.49
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.49
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.49
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.49
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.48
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.48
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.48
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.48
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.48
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.48
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.48
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.48
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.48
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.48
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.48
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.48
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.48
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.48
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.48
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.48
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.47
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.47
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.47
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.47
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.47
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.47
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.47
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.47
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.46
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.46
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.46
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.46
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.46
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.46
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.46
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.46
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.46
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.46
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.46
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.46
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.45
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.45
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.45
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.45
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.45
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.45
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.45
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.45
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.45
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.45
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.44
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.44
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.44
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.44
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.44
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.44
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.44
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.44
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.44
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.44
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.44
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.44
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.44
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.43
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.43
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.43
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.43
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.43
PHA03210	501	serine/threonine kinase US3; Provisional	99.43
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.42
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.42
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.42
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.42
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.42
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.41
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.41
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.41
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.41
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.41
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.41
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.41
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.41
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.41
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.41
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.4
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.4
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.4
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.39
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.39
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.39
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.39
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.39
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.38
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.38
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.38
KOG0584	632	consensus Serine/threonine protein kinase [General	99.38
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.37
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.37
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.37
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.37
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.36
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.36
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.36
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.36
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.35
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.35
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.35
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.35
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.34
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.34
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.34
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.34
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.34
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.34
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.34
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.34
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.34
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.33
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.33
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.33
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.33
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.32
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.32
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.32
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.31
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.31
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.31
PLN00009	294	cyclin-dependent kinase A; Provisional	99.31
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.3
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.29
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.29
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.28
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.28
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.26
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.25
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.24
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.23
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.23
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.19
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.14
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.14
KOG0586	596	consensus Serine/threonine protein kinase [General	99.12
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.12
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.11
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.06
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.05
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.04
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.02
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.01
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.97
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	98.96
KOG0607	463	consensus MAP kinase-interacting kinase and relate	98.88
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	98.83
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	98.78
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.74
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	98.74
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	98.73
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	98.71
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	98.67
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	98.66
KOG1167	418	consensus Serine/threonine protein kinase of the C	98.63
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.52
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	98.5
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	98.43
PLN03224	507	probable serine/threonine protein kinase; Provisio	98.41
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.33
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.28
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.17
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.12
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	98.08
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	97.94
KOG1152	772	consensus Signal transduction serine/threonine kin	97.87
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	97.82
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	97.46
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.42
COG0515	384	SPS1 Serine/threonine protein kinase [General func	97.38
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.22
KOG0590	601	consensus Checkpoint kinase and related serine/thr	96.25
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	96.25
KOG2137	700	consensus Protein kinase [Signal transduction mech	95.34
KOG1266	458	consensus Protein kinase [Signal transduction mech	95.13
COG4248	637	Uncharacterized protein with protein kinase and he	93.82
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	92.0
KOG1093	725	consensus Predicted protein kinase (contains TBC a	85.72
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	82.71

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.86  E-value=1.4e-21  Score=127.77  Aligned_cols=106  Identities=23%  Similarity=0.246  Sum_probs=79.0

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +...||..|||||++......|+.|+||||||+++||+++++.||.......         ...........+..+...+
T Consensus       202 ~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~~~---------~~~~v~~~~~Rp~~p~~~~  272 (362)
T KOG0192|consen  202 TSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAPVQ---------VASAVVVGGLRPPIPKECP  272 (362)
T ss_pred             cCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCHHH---------HHHHHHhcCCCCCCCccCC
Confidence            4578999999999993214689999999999999999999999998654311         1223333444444455444


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      .       .+..++..||+.||+.||++.+|+..|+.+....
T Consensus       273 ~-------~l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~  307 (362)
T KOG0192|consen  273 P-------HLSSLMERCWLVDPSRRPSFLEIVSRLESIMSHI  307 (362)
T ss_pred             H-------HHHHHHHHhCCCCCCcCCCHHHHHHHHHHHHHhh
Confidence            4       5556666699999999999999999998776543

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.85  E-value=6.9e-22  Score=132.78  Aligned_cols=97  Identities=20%  Similarity=0.306  Sum_probs=76.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +|+||+.|||||++  ....-+.|+||||||||+|||+++..||.......+         ++....+.....+|...++
T Consensus       270 SFaGTVaWMAPEvI--rnePcsEKVDIwSfGVVLWEmLT~EiPYkdVdssAI---------IwGVGsNsL~LpvPstcP~  338 (904)
T KOG4721|consen  270 SFAGTVAWMAPEVI--RNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDSSAI---------IWGVGSNSLHLPVPSTCPD  338 (904)
T ss_pred             hhhhhHhhhCHHHh--hcCCcccccceehhHHHHHHHHhcCCCccccchhee---------EEeccCCcccccCcccCch
Confidence            47899999999999  556788999999999999999999999987654432         4444455555556665555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                             .+..|+.+||+..|..||+|.+|+..|+
T Consensus       339 -------GfklL~Kqcw~sKpRNRPSFrqil~Hld  366 (904)
T KOG4721|consen  339 -------GFKLLLKQCWNSKPRNRPSFRQILLHLD  366 (904)
T ss_pred             -------HHHHHHHHHHhcCCCCCccHHHHHHHHh
Confidence                   4444555699999999999999998776

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.6e-21  Score=126.69  Aligned_cols=93  Identities=23%  Similarity=0.314  Sum_probs=71.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +++||++|||||++  ....|+.++||||+|++.+||.+|.+|+....+..          ..-.+.+..++...+..+.
T Consensus       170 tfvGTPfwMAPEVI--~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmr----------vlflIpk~~PP~L~~~~S~  237 (467)
T KOG0201|consen  170 TFVGTPFWMAPEVI--KQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMR----------VLFLIPKSAPPRLDGDFSP  237 (467)
T ss_pred             cccccccccchhhh--ccccccchhhhhhhhHHHHHHhcCCCCCcccCcce----------EEEeccCCCCCccccccCH
Confidence            68999999999999  56789999999999999999999999987655432          3333333444444444455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.+++       ..|+++||+.||++.++++
T Consensus       238 ~~kEFV-------~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  238 PFKEFV-------EACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             HHHHHH-------HHHhhcCcccCcCHHHHhh
Confidence            444444       4499999999999999975

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.84  E-value=3.2e-21  Score=127.43  Aligned_cols=97  Identities=29%  Similarity=0.443  Sum_probs=79.6

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      .+.|.|||.+  ..+.|+.++||||||+++||+++ |+.||.......          ....++.+.....|...++   
T Consensus       367 PIkWtAPEa~--~~~~FS~kSDVWSFGVlL~E~fT~G~~py~~msn~e----------v~~~le~GyRlp~P~~CP~---  431 (468)
T KOG0197|consen  367 PIKWTAPEAL--NYGKFSSKSDVWSFGVLLWELFTYGRVPYPGMSNEE----------VLELLERGYRLPRPEGCPD---  431 (468)
T ss_pred             CceecCHHHH--hhCCcccccceeehhhhHHHHhccCCCCCCCCCHHH----------HHHHHhccCcCCCCCCCCH---
Confidence            3579999999  78899999999999999999998 666766543222          5666778888888887777   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                          .+..+|..||+.+|++||||+.+...|+++...
T Consensus       432 ----~vY~lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  432 ----EVYELMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             ----HHHHHHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence                566677779999999999999999998887654

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.5e-21  Score=132.57  Aligned_cols=97  Identities=20%  Similarity=0.332  Sum_probs=79.9

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      +.||+||.|  ..++|+.++|||||||++||+++ |+.||.+.....          ....+..+.-...|+..+.    
T Consensus       669 IRWMppEsI--ly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~E----------VIe~i~~g~lL~~Pe~CP~----  732 (774)
T KOG1026|consen  669 IRWMPPESI--LYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQE----------VIECIRAGQLLSCPENCPT----  732 (774)
T ss_pred             eecCCHHHh--hcCcccchhhhhhhhhhhhhhhccccCcccccchHH----------HHHHHHcCCcccCCCCCCH----
Confidence            689999999  78999999999999999999987 888988765433          4555555655666776666    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                         .+..||..||+.+|++||++++|-..|++..+..
T Consensus       733 ---~vY~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s  766 (774)
T KOG1026|consen  733 ---EVYSLMLECWNENPKRRPSFKEIHSRLQAWAQAS  766 (774)
T ss_pred             ---HHHHHHHHHhhcCcccCCCHHHHHHHHHHHHhcC
Confidence               6777888899999999999999999999887653

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=1.4e-20  Score=125.37  Aligned_cols=95  Identities=21%  Similarity=0.324  Sum_probs=74.4

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   80 (133)
                      ++.+||++|||||++  ....|..++||||+|++++||+.|++||.....-.         .++....++. ....++..
T Consensus       427 ~TmVGTPYWMAPEVv--trk~YG~KVDIWSLGIMaIEMveGEPPYlnE~Plr---------AlyLIa~ng~P~lk~~~kl  495 (550)
T KOG0578|consen  427 STMVGTPYWMAPEVV--TRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR---------ALYLIATNGTPKLKNPEKL  495 (550)
T ss_pred             ccccCCCCccchhhh--hhcccCccccchhhhhHHHHHhcCCCCccCCChHH---------HHHHHhhcCCCCcCCcccc
Confidence            468999999999999  67899999999999999999999999998644322         1222223332 33346667


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +..+.+++.+       ||+.|+.+|+++.++|.
T Consensus       496 S~~~kdFL~~-------cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  496 SPELKDFLDR-------CLVVDVEQRASAKELLE  522 (550)
T ss_pred             CHHHHHHHHH-------HhhcchhcCCCHHHHhc
Confidence            7777777776       99999999999999986

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.83  E-value=2.4e-20  Score=119.01  Aligned_cols=99  Identities=21%  Similarity=0.265  Sum_probs=76.2

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC-C
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL-V   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   80 (133)
                      .+++||..|||||.+  .+..|+.++||||+|++++|+..|+-|+.......    ....+ +...+....++..|.. +
T Consensus       235 ~tfvGT~~YMsPERi--~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~----~~~~~-Ll~~Iv~~ppP~lP~~~f  307 (364)
T KOG0581|consen  235 NTFVGTSAYMSPERI--SGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPY----LDIFE-LLCAIVDEPPPRLPEGEF  307 (364)
T ss_pred             ccccccccccChhhh--cCCcCCcccceecccHHHHHHhhCCCCCCCcCCCC----CCHHH-HHHHHhcCCCCCCCcccC
Confidence            478999999999999  67799999999999999999999999987652211    11122 2333444556666665 7


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ++++..++..       |+++||.+|+++.++++
T Consensus       308 S~ef~~FV~~-------CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  308 SPEFRSFVSC-------CLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             CHHHHHHHHH-------HhcCCcccCCCHHHHhc
Confidence            7777776666       99999999999999985

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=1.5e-19  Score=118.13  Aligned_cols=104  Identities=23%  Similarity=0.345  Sum_probs=75.6

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc-cCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR-HGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   80 (133)
                      .+++||++|||||++..+...|+.|+||||||++.+|+.+|..||....+..        . +...+....+... ...-
T Consensus       188 ~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmk--------v-Ll~tLqn~pp~~~t~~~~  258 (516)
T KOG0582|consen  188 NTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMK--------V-LLLTLQNDPPTLLTSGLD  258 (516)
T ss_pred             ccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHH--------H-HHHHhcCCCCCcccccCC
Confidence            4689999999999965566789999999999999999999999998654421        1 2233333222111 1111


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+....+-+.+..++-.|+++||.+|||++++++
T Consensus       259 ~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  259 KDEDKKFSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             hHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence            2333445557778888899999999999999985

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.79  E-value=6.5e-19  Score=105.47  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .||..|+|||++  ....++.++||||+|++++++++|..|+.......    ..    ........ ....+... ...
T Consensus        65 ~g~~~y~aPE~~--~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~~----~~----~~~~~~~~-~~~~~~~~-~~~  132 (176)
T smart00750       65 RVDPYFMAPEVI--QGQSYTEKADIYSLGITLYEALDYELPYNEERELS----AI----LEILLNGM-PADDPRDR-SNL  132 (176)
T ss_pred             CCcccccChHHh--cCCCCcchhhHHHHHHHHHHHHhCCCCccccchhc----HH----HHHHHHHh-ccCCcccc-ccH
Confidence            589999999998  56678999999999999999999999986432211    11    11111111 10101100 011


Q ss_pred             HHHH--HHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIV--RKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~--~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      ....  ..+..++..||+.+|.+||++.+++..+...
T Consensus       133 ~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~  169 (176)
T smart00750      133 ESVSAARSFADFMRVCASRLPQRREAANHYLAHCRAL  169 (176)
T ss_pred             HHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHH
Confidence            1122  2477888889999999999999999876544

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.6e-19  Score=128.56  Aligned_cols=96  Identities=26%  Similarity=0.347  Sum_probs=74.7

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      +.||+||.+  ..+.|+.|+|||||||++||+++ |..||.......          +...+.++.....|...++    
T Consensus       868 vkWm~PEsl--~d~iFtskSDvWsFGVllWEifslG~~PY~~~~n~~----------v~~~~~~ggRL~~P~~CP~----  931 (1025)
T KOG1095|consen  868 VKWMPPESL--KDGIFTSKSDVWSFGVLLWEIFSLGATPYPSRSNFE----------VLLDVLEGGRLDPPSYCPE----  931 (1025)
T ss_pred             eecCCHHHH--hhcccccccchhhhHHHHHHHHhCCCCCCCCcchHH----------HHHHHHhCCccCCCCCCCh----
Confidence            689999998  55899999999999999999998 677887654332          3332223335555666666    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                         .+.++|.+||+.+|++||++..|++.+.++.+.
T Consensus       932 ---~ly~lM~~CW~~~pe~RP~F~~i~~q~~~i~~~  964 (1025)
T KOG1095|consen  932 ---KLYQLMLQCWKHDPEDRPSFRTIVEQDPAISNA  964 (1025)
T ss_pred             ---HHHHHHHHHccCChhhCccHHHHHhhhhhhhhh
Confidence               677888899999999999999999988877654

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.78  E-value=2.1e-19  Score=122.10  Aligned_cols=96  Identities=22%  Similarity=0.325  Sum_probs=81.3

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      .+.|||||.+  ++.+|+..+|||.||+.+||++. |..||.+....+          ....++++..+..|+.+++   
T Consensus       555 PIKWmaPESI--NfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkNsD----------VI~~iEnGeRlP~P~nCPp---  619 (974)
T KOG4257|consen  555 PIKWMAPESI--NFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKNSD----------VIGHIENGERLPCPPNCPP---  619 (974)
T ss_pred             ceeecCcccc--chhcccchhhHHHHHHHHHHHHHhcCCccccccccc----------eEEEecCCCCCCCCCCCCh---
Confidence            4689999999  89999999999999999999876 999998876544          5666777877777777666   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                          .+..||..||.++|.+||.+.+|...|+++.+
T Consensus       620 ----~LYslmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  620 ----ALYSLMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             ----HHHHHHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence                67778888999999999999999988876654

>PHA02988 hypothetical protein; Provisional

Probab=99.78  E-value=5.4e-19  Score=113.15  Aligned_cols=101  Identities=13%  Similarity=0.155  Sum_probs=70.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++.+....++.++||||||+++||+++|..||......         ............+..+...+. 
T Consensus       180 ~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~~---------~~~~~i~~~~~~~~~~~~~~~-  249 (283)
T PHA02988        180 NVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTTK---------EIYDLIINKNNSLKLPLDCPL-  249 (283)
T ss_pred             ccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCHH---------HHHHHHHhcCCCCCCCCcCcH-
Confidence            4588899999998433367899999999999999999999999754221         111112122222223322333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                            .+..++.+||+.||++||++++|+..|+...
T Consensus       250 ------~l~~li~~cl~~dp~~Rps~~ell~~l~~~~  280 (283)
T PHA02988        250 ------EIKCIVEACTSHDSIKRPNIKEILYNLSLYK  280 (283)
T ss_pred             ------HHHHHHHHHhcCCcccCcCHHHHHHHHHHHH
Confidence                  3455666699999999999999999988654

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.77  E-value=3.7e-20  Score=127.77  Aligned_cols=101  Identities=18%  Similarity=0.266  Sum_probs=81.3

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      +.|.|||.+  .+.+|+..+||||||+++||.++ |..||+.....+          .+..++++.....|...+.    
T Consensus       798 iRWTAPEAI--a~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQd----------VIkaIe~gyRLPpPmDCP~----  861 (996)
T KOG0196|consen  798 IRWTAPEAI--AYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQD----------VIKAIEQGYRLPPPMDCPA----  861 (996)
T ss_pred             eeecChhHh--hhcccCchhhccccceEEEEecccCCCcccccchHH----------HHHHHHhccCCCCCCCCcH----
Confidence            579999999  78899999999999999999765 999998754322          4444555555555554444    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPP  127 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~  127 (133)
                         .+..||+.||++|-+.||.|.+|+..|+++++......
T Consensus       862 ---aL~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP~SLk  899 (996)
T KOG0196|consen  862 ---ALYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNPNSLK  899 (996)
T ss_pred             ---HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCchhhc
Confidence               88999999999999999999999999999987765443

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=4.4e-19  Score=110.44  Aligned_cols=99  Identities=20%  Similarity=0.317  Sum_probs=70.8

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      .+++||+.||+||++  ....|+.++||||+||+++||+.-.+||.+..-..          +...++.+..+..|.   
T Consensus       186 ~S~VGTPyYMSPE~i--~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~----------L~~KI~qgd~~~~p~---  250 (375)
T KOG0591|consen  186 HSLVGTPYYMSPERI--HESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLS----------LCKKIEQGDYPPLPD---  250 (375)
T ss_pred             HhhcCCCcccCHHHH--hcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHH----------HHHHHHcCCCCCCcH---
Confidence            357999999999999  67899999999999999999999999998752211          445555554443331   


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                      +....   .+..++..|+..|+..||+...++..+..
T Consensus       251 ~~YS~---~l~~li~~ci~vd~~~RP~t~~~v~di~~  284 (375)
T KOG0591|consen  251 EHYST---DLRELINMCIAVDPEQRPDTVPYVQDIQS  284 (375)
T ss_pred             HHhhh---HHHHHHHHHccCCcccCCCcchHHHHHHH
Confidence            22222   34445556999999999985555544433

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1.5e-17  Score=109.36  Aligned_cols=113  Identities=35%  Similarity=0.550  Sum_probs=83.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc--cCCC-C
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR--HGLV-T   81 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~   81 (133)
                      .||.+|++||++  ..+..+.++||||||++++|+++|+.+.+.....   .......|....+.++.....  +... .
T Consensus       239 ~gt~gY~~PEy~--~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~---~~~~l~~w~~~~~~~~~~~eiiD~~l~~~  313 (361)
T KOG1187|consen  239 MGTFGYLAPEYA--STGKLTEKSDVYSFGVVLLELITGRKAVDQSRPR---GELSLVEWAKPLLEEGKLREIVDPRLKEG  313 (361)
T ss_pred             CCCCccCChhhh--ccCCcCcccccccchHHHHHHHhCCcccCCCCCc---ccccHHHHHHHHHHCcchhheeCCCccCC
Confidence            799999999998  5678999999999999999999999877654322   223366666555555422221  2211 1


Q ss_pred             hhHH-HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           82 EEEE-VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        82 ~~~~-~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .... ..+.++..++..|++.+|..||+|.+|+..|+.+...
T Consensus       314 ~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  314 EYPDEKEVKKLAELALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             CCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            2121 5778899999999999999999999999999665543

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.74  E-value=8.2e-18  Score=107.41  Aligned_cols=96  Identities=15%  Similarity=0.246  Sum_probs=68.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||.+  ....++.++|+||+|++++|+++ |..||.+.....          ....+..+.....+...+. 
T Consensus       187 ~~~~~y~aPE~~--~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~~~----------~~~~i~~~~~~~~~~~~~~-  253 (283)
T cd05048         187 LLPVRWMPPEAI--LYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSNQE----------VIEMIRSRQLLPCPEDCPA-  253 (283)
T ss_pred             cccccccCHHHh--ccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHHcCCcCCCcccCCH-
Confidence            356789999987  45678899999999999999997 888886543211          2222323322223333344 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                            .+..++..||+.||++||++.+|++.|+++
T Consensus       254 ------~~~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         254 ------RVYALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence                  455556669999999999999999999763

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.73  E-value=2.1e-18  Score=111.79  Aligned_cols=96  Identities=23%  Similarity=0.252  Sum_probs=78.6

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      .+.||++|.+  ....|+..+|+||||+.+||+.+ |+.|+....+..          ...-++++.....|...++   
T Consensus       461 PvkWMslEal--~n~~yssasDvWsfGVllWELmtlg~~PyaeIDPfE----------m~~ylkdGyRlaQP~NCPD---  525 (563)
T KOG1024|consen  461 PVKWMSLEAL--QNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDPFE----------MEHYLKDGYRLAQPFNCPD---  525 (563)
T ss_pred             cccccCHHHH--hhhhhcchhhhHHHHHHHHHHHhcCCCCccccCHHH----------HHHHHhccceecCCCCCcH---
Confidence            4689999998  66799999999999999999987 888987765543          5555677777777776666   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                          .++.+|.-||...|++||+++|++.-|.+...
T Consensus       526 ----eLf~vMacCWallpeeRPsf~Qlv~cLseF~~  557 (563)
T KOG1024|consen  526 ----ELFTVMACCWALLPEERPSFSQLVICLSEFHT  557 (563)
T ss_pred             ----HHHHHHHHHHhcCcccCCCHHHHHHHHHHHHH
Confidence                57777777999999999999999987776543

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.73  E-value=1.4e-17  Score=108.92  Aligned_cols=99  Identities=24%  Similarity=0.349  Sum_probs=69.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||++  ....++.++||||||++++++++ |..||.......         .....+..+.....+...+. 
T Consensus       237 ~~~~~y~aPE~~--~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-  304 (338)
T cd05102         237 RLPLKWMAPESI--FDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE---------EFCQRLKDGTRMRAPENATP-  304 (338)
T ss_pred             CCCccccCcHHh--hcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH---------HHHHHHhcCCCCCCCCCCCH-
Confidence            345789999988  45678999999999999999997 888886532211         02222222322223333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||+.||++||++.+|++.|+++..
T Consensus       305 ------~l~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         305 ------EIYRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                  35566677999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=2.2e-17  Score=120.33  Aligned_cols=113  Identities=21%  Similarity=0.354  Sum_probs=77.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-----cccccC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-----DLKRHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~   78 (133)
                      ..||..|+|||++  ....++.++||||||+++||+++|+.|+......    ......|.........     .+....
T Consensus       838 ~~~t~~y~aPE~~--~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  911 (968)
T PLN00113        838 CFISSAYVAPETR--ETKDITEKSDIYGFGLILIELLTGKSPADAEFGV----HGSIVEWARYCYSDCHLDMWIDPSIRG  911 (968)
T ss_pred             ccccccccCcccc--cCCCCCcccchhhHHHHHHHHHhCCCCCCcccCC----CCcHHHHHHHhcCccchhheeCccccC
Confidence            3578899999998  5667899999999999999999999998543221    1222233222211110     011111


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      . ..........+.+++.+||+.||++||++.+|++.|+++.+..
T Consensus       912 ~-~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~~  955 (968)
T PLN00113        912 D-VSVNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRSS  955 (968)
T ss_pred             C-CCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhccc
Confidence            1 1112234556788999999999999999999999999887654

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=7.2e-18  Score=113.50  Aligned_cols=93  Identities=26%  Similarity=0.457  Sum_probs=72.2

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      .++|||+-|+|||++  ....++.-+||||+||++|.++.|++||+...-..          ....++.. .-..|...+
T Consensus       176 ~TlCGTPNYIAPEVl--~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vke----------ty~~Ik~~-~Y~~P~~ls  242 (592)
T KOG0575|consen  176 KTLCGTPNYIAPEVL--NKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKE----------TYNKIKLN-EYSMPSHLS  242 (592)
T ss_pred             ceecCCCcccChhHh--ccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHH----------HHHHHHhc-CcccccccC
Confidence            368999999999999  56788999999999999999999999998642211          33333322 223456677


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....+++.+++       +.||.+||++++|+.
T Consensus       243 ~~A~dLI~~lL-------~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  243 AEAKDLIRKLL-------RPNPSERPSLDEVLD  268 (592)
T ss_pred             HHHHHHHHHHh-------cCCcccCCCHHHHhc
Confidence            77778887755       999999999999985

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.72  E-value=1.1e-17  Score=116.47  Aligned_cols=94  Identities=22%  Similarity=0.380  Sum_probs=74.1

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      +.|||||.+  ....|+.++||||||+++||+++ |..||.+....         ..+...++.+.....|...+.    
T Consensus       485 ~kWmApEsl--~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~---------~~l~~~l~~G~r~~~P~~c~~----  549 (609)
T KOG0200|consen  485 VKWMAPESL--FDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPT---------EELLEFLKEGNRMEQPEHCSD----  549 (609)
T ss_pred             eeecCHHHh--ccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcH---------HHHHHHHhcCCCCCCCCCCCH----
Confidence            359999998  55799999999999999999988 77788653211         113446677777777776655    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                         .+..+|..||+.+|++||++.++...++..
T Consensus       550 ---eiY~iM~~CW~~~p~~RP~F~~~~~~~~~~  579 (609)
T KOG0200|consen  550 ---EIYDLMKSCWNADPEDRPTFSECVEFFEKH  579 (609)
T ss_pred             ---HHHHHHHHHhCCCcccCCCHHHHHHHHHHH
Confidence               566777889999999999999999888874

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.71  E-value=1.6e-17  Score=113.41  Aligned_cols=96  Identities=25%  Similarity=0.343  Sum_probs=80.3

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      +.|.|||.+  .++.|+.|+|||+||+++||+.+ |-.||.+.....          ...+++++.....|..+++    
T Consensus       430 IKWTAPEsL--AyNtFSiKSDVWAFGVLLWEIATYGMsPYPGidlSq----------VY~LLEkgyRM~~PeGCPp----  493 (1157)
T KOG4278|consen  430 IKWTAPESL--AYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----------VYGLLEKGYRMDGPEGCPP----  493 (1157)
T ss_pred             ccccCcccc--cccccccchhhHHHHHHHHHHHhcCCCCCCCccHHH----------HHHHHhccccccCCCCCCH----
Confidence            679999998  78899999999999999999987 556776543322          6777888888888888777    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                         +++.||.+||+-+|++||++.++-+.++.+...
T Consensus       494 ---kVYeLMraCW~WsPsDRPsFaeiHqafEtmf~~  526 (1157)
T KOG4278|consen  494 ---KVYELMRACWNWSPSDRPSFAEIHQAFETMFSS  526 (1157)
T ss_pred             ---HHHHHHHHHhcCCcccCccHHHHHHHHHHHhcc
Confidence               677788889999999999999999998877654

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=1.3e-17  Score=111.68  Aligned_cols=97  Identities=22%  Similarity=0.365  Sum_probs=66.4

Q ss_pred             CCccccccCcccccccc---------CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc
Q 040499            4 ARGTVSYIAPEVFCRNF---------GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL   74 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~---------~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (133)
                      -+||+.||+||.+....         -..+.++||||+||++|+|+.|+.||.....        ....+......+...
T Consensus       521 QvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n--------~~aKl~aI~~P~~~I  592 (677)
T KOG0596|consen  521 QVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIIN--------QIAKLHAITDPNHEI  592 (677)
T ss_pred             ccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHH--------HHHHHHhhcCCCccc
Confidence            57999999999873211         1366889999999999999999999975421        111122222222222


Q ss_pred             cccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           75 KRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..|......      .++.+|..||+.||++|+++.+|++
T Consensus       593 efp~~~~~~------~li~~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  593 EFPDIPEND------ELIDVMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             cccCCCCch------HHHHHHHHHHhcCcccCCCcHHHhc
Confidence            333322221      2778888899999999999999986

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.71  E-value=5.8e-18  Score=108.47  Aligned_cols=96  Identities=21%  Similarity=0.316  Sum_probs=71.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      .+.||+.|||||++.. +......+||||+||++.||++|+.||....        ....+..........+..|...++
T Consensus       180 ~~~Gtp~~maPEvi~~-g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~--------~~~~~~~~ig~~~~~P~ip~~ls~  250 (313)
T KOG0198|consen  180 SVQGTPNYMAPEVIRN-GEVARRESDIWSLGCTVVEMLTGKPPWSEFF--------EEAEALLLIGREDSLPEIPDSLSD  250 (313)
T ss_pred             cccCCccccCchhhcC-CCcCCccchhhhcCCEEEeccCCCCcchhhc--------chHHHHHHHhccCCCCCCCcccCH
Confidence            4679999999999932 2223358999999999999999999987641        112223334444444566777777


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+++.+       |++.||+.|||+++++.
T Consensus       251 ~a~~Fl~~-------C~~~~p~~Rpta~eLL~  275 (313)
T KOG0198|consen  251 EAKDFLRK-------CFKRDPEKRPTAEELLE  275 (313)
T ss_pred             HHHHHHHH-------HhhcCcccCcCHHHHhh
Confidence            77777777       88999999999999987

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.71  E-value=1.5e-17  Score=112.18  Aligned_cols=105  Identities=20%  Similarity=0.224  Sum_probs=74.0

Q ss_pred             CccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      -|++.|||||+++. ....|+..+|||+||+|+|||++|..||.....+.+       -|..   -.+.-.   ......
T Consensus       551 ~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqI-------ifmV---GrG~l~---pd~s~~  617 (678)
T KOG0193|consen  551 HGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQI-------IFMV---GRGYLM---PDLSKI  617 (678)
T ss_pred             ccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhhe-------EEEe---cccccC---ccchhh
Confidence            47889999999843 234789999999999999999999999984443321       1111   111111   111222


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      ..++.+.+.+|+..||.+++++||.+.+|+..|+++...
T Consensus       618 ~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~  656 (678)
T KOG0193|consen  618 RSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELLPS  656 (678)
T ss_pred             hccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhhhc
Confidence            234455677777789999999999999999988877764

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.69  E-value=4.9e-17  Score=104.35  Aligned_cols=98  Identities=17%  Similarity=0.301  Sum_probs=69.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .|+..|++||.+  ....++.++|+||+|++++++++ |..|+.......          .......+.....+...+. 
T Consensus       186 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  252 (291)
T cd05094         186 MLPIRWMPPESI--MYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSNTE----------VIECITQGRVLERPRVCPK-  252 (291)
T ss_pred             CcceeecChHHh--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHhCCCCCCCCccCCH-
Confidence            356789999988  45678889999999999999998 888875432211          1122222222222232333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++.+||+.+|++||++.+|++.|+++..
T Consensus       253 ------~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         253 ------EVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             ------HHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence                  45566667999999999999999999998865

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.69  E-value=9.6e-17  Score=102.31  Aligned_cols=94  Identities=18%  Similarity=0.323  Sum_probs=65.5

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||++  ....++.++||||+|++++++++ |..||.......          ....+..+.....+...+.  
T Consensus       186 ~~~~y~aPE~~--~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--  251 (280)
T cd05049         186 LPIRWMPPESI--MYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLSNEE----------VIECITQGRLLQRPRTCPS--  251 (280)
T ss_pred             ccceecChhhh--ccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCCHHH----------HHHHHHcCCcCCCCCCCCH--
Confidence            45679999998  55678899999999999999998 888875432211          1122222222222333344  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+..++..||+.||++||++.+|++.|++
T Consensus       252 -----~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         252 -----EVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             -----HHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence                 34555666999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.69  E-value=1.1e-16  Score=100.98  Aligned_cols=94  Identities=22%  Similarity=0.297  Sum_probs=66.6

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|+|||.+  ....++.++|+||+|++++|+++ |..||.......          ....+..+..+..+...+..  
T Consensus       161 ~~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~--  226 (257)
T cd05116         161 PVKWYAPECM--NYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNE----------VTQMIESGERMECPQRCPPE--  226 (257)
T ss_pred             CccccCHhHh--ccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHHCCCCCCCCCCCCHH--
Confidence            4689999987  45677889999999999999997 888886532211          22222333333334444443  


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           +.+++..||+.||++||++.+|...|++.
T Consensus       227 -----l~~li~~~~~~~p~~Rp~~~~i~~~l~~~  255 (257)
T cd05116         227 -----MYDLMKLCWTYGVDERPGFAVVELRLRNY  255 (257)
T ss_pred             -----HHHHHHHHhccCchhCcCHHHHHHHHhcc
Confidence                 44555569999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.68  E-value=9.8e-17  Score=101.79  Aligned_cols=95  Identities=22%  Similarity=0.281  Sum_probs=66.6

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+..+.....+...+.  
T Consensus       170 ~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--  235 (266)
T cd05064         170 SPVLWAAPEAI--QYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSGQD----------VIKAVEDGFRLPAPRNCPN--  235 (266)
T ss_pred             CceeecCHHHH--hhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCHHH----------HHHHHHCCCCCCCCCCCCH--
Confidence            45689999988  55678899999999999999775 888886542211          2222222222222333333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+.+++..||+.+|++||++.+|...|+++
T Consensus       236 -----~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         236 -----LLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             -----HHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence                 455566669999999999999999988764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.68  E-value=7.3e-17  Score=103.43  Aligned_cols=98  Identities=17%  Similarity=0.286  Sum_probs=69.1

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||.+  ....++.++|+||+|++++++++ |..|+.......          ....+..+.....+...+.  
T Consensus       184 ~~~~y~aPE~~--~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~~~----------~~~~i~~~~~~~~~~~~~~--  249 (288)
T cd05093         184 LPIRWMPPESI--MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNE----------VIECITQGRVLQRPRTCPK--  249 (288)
T ss_pred             ccccccCHHHh--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHHcCCcCCCCCCCCH--
Confidence            46679999988  55678899999999999999998 788875432211          1122222222222333333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                           .+.+++.+||+.||.+||++.+|+..|+++.+.
T Consensus       250 -----~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~  282 (288)
T cd05093         250 -----EVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKA  282 (288)
T ss_pred             -----HHHHHHHHHccCChhhCCCHHHHHHHHHHHHHh
Confidence                 456666779999999999999999999888754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.68  E-value=1.6e-16  Score=101.51  Aligned_cols=95  Identities=17%  Similarity=0.262  Sum_probs=65.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||.+  ....++.++||||+|++++|+++ |..|+......         . ....+........+...+..
T Consensus       187 ~~~~~y~aPE~~--~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~---------~-~~~~i~~~~~~~~~~~~~~~  254 (283)
T cd05091         187 LLPIRWMSPEAI--MYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ---------D-VIEMIRNRQVLPCPDDCPAW  254 (283)
T ss_pred             cCCccccCHHHH--hcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCHH---------H-HHHHHHcCCcCCCCCCCCHH
Confidence            346789999987  45678889999999999999998 66676543221         1 22222222222223333443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                             +..++..||+.+|++||++.+|+..|+.
T Consensus       255 -------~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         255 -------VYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             -------HHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence                   4455666999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=8.7e-18  Score=109.02  Aligned_cols=98  Identities=22%  Similarity=0.301  Sum_probs=66.4

Q ss_pred             CCCCCccccccCccccccccC-ccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc---
Q 040499            1 MLDARGTVSYIAPEVFCRNFG-GISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR---   76 (133)
Q Consensus         1 ~~~~~gt~~~~ape~~~~~~~-~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   76 (133)
                      |.++|||+.|.|||++...+. .+..++|+||+||+++-+++|.+||.+......         +.+.+..+.....   
T Consensus       335 m~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~s---------l~eQI~~G~y~f~p~~  405 (475)
T KOG0615|consen  335 MKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPS---------LKEQILKGRYAFGPLQ  405 (475)
T ss_pred             hhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCcc---------HHHHHhcCcccccChh
Confidence            568999999999999843222 334588999999999999999999987644321         2222222222111   


Q ss_pred             cCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           77 HGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      -..+++.       .+.|+..+|..||++||++.++++
T Consensus       406 w~~Isee-------a~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  406 WDRISEE-------ALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             hhhhhHH-------HHHHHHHhhEeCcccCcCHHHHhc
Confidence            1223444       444445567999999999999885

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.67  E-value=1.7e-16  Score=101.36  Aligned_cols=98  Identities=24%  Similarity=0.382  Sum_probs=69.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .|+..|++||.+  ....++.++|+||||++++|+++ |..|+.+.....          ....+..+.....+...+. 
T Consensus       172 ~~~~~y~~pE~~--~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  238 (279)
T cd05111         172 KTPIKWMALESI--LFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRPHE----------VPDLLEKGERLAQPQICTI-  238 (279)
T ss_pred             CCcccccCHHHh--ccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHHCCCcCCCCCCCCH-
Confidence            456789999988  55678999999999999999998 888876542211          2222233322222332222 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||..||++||++.+++..|..+.+
T Consensus       239 ------~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~  270 (279)
T cd05111         239 ------DVYMVMVKCWMIDENVRPTFKELANEFTRMAR  270 (279)
T ss_pred             ------HHHHHHHHHcCCCcccCcCHHHHHHHHHHHHh
Confidence                  34556667999999999999999998888664

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.67  E-value=5.6e-17  Score=103.73  Aligned_cols=87  Identities=21%  Similarity=0.355  Sum_probs=69.3

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +++|||+-|||||++  ....|+..+|+||+|+++++|++|.+||.......          ....+.....+..+...+
T Consensus       183 ~tfcGT~eYmAPEil--~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~----------~~~~I~~~k~~~~p~~ls  250 (357)
T KOG0598|consen  183 RTFCGTPEYMAPEIL--LGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKK----------MYDKILKGKLPLPPGYLS  250 (357)
T ss_pred             ccccCCccccChHHH--hcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHH----------HHHHHhcCcCCCCCccCC
Confidence            358999999999999  56799999999999999999999999998764332          333444443344466678


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRS  107 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rp  107 (133)
                      ....+++++++       +.||.+|.
T Consensus       251 ~~ardll~~LL-------~rdp~~RL  269 (357)
T KOG0598|consen  251 EEARDLLKKLL-------KRDPRQRL  269 (357)
T ss_pred             HHHHHHHHHHh-------ccCHHHhc
Confidence            88888988866       99999996

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.67  E-value=1.9e-16  Score=100.29  Aligned_cols=94  Identities=29%  Similarity=0.387  Sum_probs=65.6

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++||||+|++++++++ |..|+.......          ....+........+...+.   
T Consensus       168 ~~~y~aPE~~--~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  232 (263)
T cd05052         168 PIKWTAPESL--AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----------VYELLEKGYRMERPEGCPP---  232 (263)
T ss_pred             ccccCCHHHh--ccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHHCCCCCCCCCCCCH---
Confidence            4579999987  55678889999999999999998 888875432111          1222222222223333344   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                          .+..++.+||+.||++||++.++++.|+.+
T Consensus       233 ----~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         233 ----KVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             ----HHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence                344555669999999999999999999865

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.67  E-value=1.8e-16  Score=105.18  Aligned_cols=97  Identities=20%  Similarity=0.403  Sum_probs=67.1

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||++  ....++.++||||+|++++++++ |+.||.......     .    .......+.....+...+.  
T Consensus       276 ~~~~y~aPE~~--~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~--  342 (374)
T cd05106         276 LPVKWMAPESI--FDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS-----K----FYKMVKRGYQMSRPDFAPP--  342 (374)
T ss_pred             CccceeCHHHh--cCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH-----H----HHHHHHcccCccCCCCCCH--
Confidence            45679999988  45678999999999999999997 888886542211     0    1111222222222332333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                           .+..++..||+.||++||++.+|++.|+++.
T Consensus       343 -----~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         343 -----EIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             -----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence                 4555666699999999999999999998764

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.67  E-value=4.3e-17  Score=103.15  Aligned_cols=93  Identities=25%  Similarity=0.403  Sum_probs=61.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+...|++||.+  ....++.++||||||+++||+++ +..|+......         . ....+........+...+. 
T Consensus       166 ~~~~~~~aPE~~--~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~-  232 (259)
T PF07714_consen  166 QLPLRYLAPEVL--KDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDNE---------E-IIEKLKQGQRLPIPDNCPK-  232 (259)
T ss_dssp             ESGGGGS-HHHH--HHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCHH---------H-HHHHHHTTEETTSBTTSBH-
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccc---------c-ccccccccccceeccchhH-
Confidence            356789999998  45668999999999999999999 66776543211         1 2222333333333444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEML  116 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l  116 (133)
                            .+..++.+||..||++||++.+|++.|
T Consensus       233 ------~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  233 ------DIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             ------HHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             ------HHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence                  455566669999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.67  E-value=2.2e-16  Score=103.38  Aligned_cols=99  Identities=25%  Similarity=0.381  Sum_probs=69.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||++  ....++.++||||+|++++++++ |..||.......     .    ....+........+..... 
T Consensus       236 ~~~~~y~aPE~~--~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~-  303 (337)
T cd05054         236 RLPLKWMAPESI--FDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDE-----E----FCRRLKEGTRMRAPEYATP-  303 (337)
T ss_pred             CCCccccCcHHh--cCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccH-----H----HHHHHhccCCCCCCccCCH-
Confidence            356689999988  45678899999999999999997 888886532211     1    1122222222222332233 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||+.+|++||++.+|++.|+++.+
T Consensus       304 ------~~~~l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         304 ------EIYSIMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                  45566677999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.66  E-value=1.1e-16  Score=110.24  Aligned_cols=87  Identities=26%  Similarity=0.402  Sum_probs=70.2

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      +.|.|||.+  .+..|+.++|||+|||++|||++ |+.|+.+.....          +...+.++.....|+.+++    
T Consensus       279 fAWCaPEsL--rh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~q----------IL~~iD~~erLpRPk~cse----  342 (1039)
T KOG0199|consen  279 FAWCAPESL--RHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQ----------ILKNIDAGERLPRPKYCSE----  342 (1039)
T ss_pred             ccccCHhHh--ccccccccchhhhhhhhHHhhhccCCCCCCCCCHHH----------HHHhccccccCCCCCCChH----
Confidence            569999999  78899999999999999999998 677887654432          5555666666666665555    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAV  113 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~  113 (133)
                         .++++|..||..+|.+||+|..|.
T Consensus       343 ---dIY~imk~cWah~paDRptFsair  366 (1039)
T KOG0199|consen  343 ---DIYQIMKNCWAHNPADRPTFSAIR  366 (1039)
T ss_pred             ---HHHHHHHHhccCCccccccHHHHH
Confidence               677778889999999999999996

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.66  E-value=1.3e-16  Score=108.21  Aligned_cols=97  Identities=20%  Similarity=0.245  Sum_probs=69.2

Q ss_pred             CCCCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      .+|+||++|||||++.. -.+.|+-++||||+|+++.|+..+++|+...+.         .+.+..+..+..+......+
T Consensus       180 nsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNA---------MSALYHIAQNesPtLqs~eW  250 (948)
T KOG0577|consen  180 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA---------MSALYHIAQNESPTLQSNEW  250 (948)
T ss_pred             hcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchH---------HHHHHHHHhcCCCCCCCchh
Confidence            36899999999999832 356899999999999999999999999865433         22244444433333333333


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +..+.       +++..|+++-|.+|||..+++.
T Consensus       251 S~~F~-------~Fvd~CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  251 SDYFR-------NFVDSCLQKIPQERPTSEELLK  277 (948)
T ss_pred             HHHHH-------HHHHHHHhhCcccCCcHHHHhh
Confidence            44333       3444499999999999998875

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.66  E-value=1.9e-16  Score=108.32  Aligned_cols=93  Identities=20%  Similarity=0.284  Sum_probs=65.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||++  ....++.++||||+|++++++++|+.||......         . .......+.....+...+.
T Consensus       204 ~~~Gt~~Y~aPE~~--~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~~~---------~-~~~~~~~~~~~~~~~~~~~  271 (496)
T PTZ00283        204 TFCGTPYYVAPEIW--RRKPYSKKADMFSLGVLLYELLTLKRPFDGENME---------E-VMHKTLAGRYDPLPPSISP  271 (496)
T ss_pred             cccCCcceeCHHHh--CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH---------H-HHHHHhcCCCCCCCCCCCH
Confidence            35689999999998  5567899999999999999999999998643211         1 1111111222222333444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||+.||.+||++.+++.
T Consensus       272 -------~l~~li~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        272 -------EMQEIVTALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             -------HHHHHHHHHcccChhhCcCHHHHHh
Confidence                   3445555699999999999999875

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.66  E-value=1.5e-16  Score=108.91  Aligned_cols=95  Identities=19%  Similarity=0.342  Sum_probs=70.4

Q ss_pred             CCCccccccCcccc-c--cccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc--ccccc
Q 040499            3 DARGTVSYIAPEVF-C--RNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE--DLKRH   77 (133)
Q Consensus         3 ~~~gt~~~~ape~~-~--~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   77 (133)
                      +|.||++|||||++ +  .....|+.++||||||+.+.||..+.+|-.......          ..-.+....  ....|
T Consensus       189 sFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMR----------VllKiaKSePPTLlqP  258 (1187)
T KOG0579|consen  189 SFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMR----------VLLKIAKSEPPTLLQP  258 (1187)
T ss_pred             cccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHH----------HHHHHhhcCCCcccCc
Confidence            58999999999987 2  233479999999999999999999998876544321          222222222  22336


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..++..+.++++.       ||.+||..||++.++++
T Consensus       259 S~Ws~~F~DfLk~-------cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  259 SHWSRSFSDFLKR-------CLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             chhhhHHHHHHHH-------HHhcCCccCCCHHHHhh
Confidence            6677777777776       99999999999999875

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.66  E-value=3.6e-16  Score=98.82  Aligned_cols=95  Identities=21%  Similarity=0.334  Sum_probs=65.3

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+||+|++++++++ |..||......      .    ....+............+.  
T Consensus       166 ~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  231 (261)
T cd05072         166 FPIKWTAPEAI--NFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSNS------D----VMSALQRGYRMPRMENCPD--  231 (261)
T ss_pred             cceecCCHHHh--ccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH--
Confidence            45679999988  55678889999999999999998 88887643221      1    1111111111111222333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+..++.+||+.+|++||+++++...|+++
T Consensus       232 -----~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         232 -----ELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             -----HHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence                 355666679999999999999999998863

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.66  E-value=3e-16  Score=99.03  Aligned_cols=95  Identities=26%  Similarity=0.414  Sum_probs=66.5

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+||+|++++++++ |..||......      .    ....+........+...+.   
T Consensus       161 ~~~y~aPE~~--~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~---  225 (257)
T cd05060         161 PLKWYAPECI--NYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKGA------E----VIAMLESGERLPRPEECPQ---  225 (257)
T ss_pred             cccccCHHHh--cCCCCCccchHHHHHHHHHHHHcCCCCCcccCCHH------H----HHHHHHcCCcCCCCCCCCH---
Confidence            4579999988  55678899999999999999997 88888643221      1    1111111212222333333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                          .+..++.+||+.+|++||++.+|.+.|+++.
T Consensus       226 ----~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         226 ----EIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             ----HHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence                4556667799999999999999999998764

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=2.3e-16  Score=107.66  Aligned_cols=99  Identities=19%  Similarity=0.325  Sum_probs=79.0

Q ss_pred             CCCCccccccCccccccccCccc-cccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGIS-HKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~-~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      .+.||++-|.|||++  .+..|. .++||||.||+++.+++|+.||++.+...          +...+..+ ....|..+
T Consensus       169 eTSCGSPHYA~PEIV--~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~----------LLlKV~~G-~f~MPs~I  235 (786)
T KOG0588|consen  169 ETSCGSPHYAAPEIV--SGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRV----------LLLKVQRG-VFEMPSNI  235 (786)
T ss_pred             cccCCCcccCCchhh--cCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHH----------HHHHHHcC-cccCCCcC
Confidence            467999999999999  455555 78999999999999999999998665432          44444544 33667888


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCc
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGL  120 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~  120 (133)
                      +..+.+++.+|+       ..||+.|.++.+|++  .|.+..
T Consensus       236 s~eaQdLLr~ml-------~VDp~~RiT~~eI~kHP~l~g~~  270 (786)
T KOG0588|consen  236 SSEAQDLLRRML-------DVDPSTRITTEEILKHPFLSGYT  270 (786)
T ss_pred             CHHHHHHHHHHh-------ccCccccccHHHHhhCchhhcCC
Confidence            999999999855       999999999999987  555443

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.66  E-value=1.4e-16  Score=105.13  Aligned_cols=95  Identities=18%  Similarity=0.278  Sum_probs=72.3

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ++.+||+.|++||++  ....|+.|+|+||+||+++|+++-+++|.......          +...+.+......+...+
T Consensus       164 ~tvvGTp~YmcPEil--~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m~~----------Li~ki~~~~~~Plp~~ys  231 (426)
T KOG0589|consen  164 STVVGTPYYMCPEIL--SDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNMSE----------LILKINRGLYSPLPSMYS  231 (426)
T ss_pred             heecCCCcccCHHHh--CCCCCCccCcchhhcchHHHHHhcccccCccchHH----------HHHHHhhccCCCCCcccc
Confidence            457899999999999  67899999999999999999999999998765543          333333333334455555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                      .....+++.       |++.+|..||++.+++..
T Consensus       232 ~el~~lv~~-------~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  232 SELRSLVKS-------MLRKNPEHRPSALELLRR  258 (426)
T ss_pred             HHHHHHHHH-------HhhcCCccCCCHHHHhhC
Confidence            544444444       779999999999999863

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.66  E-value=3.1e-16  Score=99.11  Aligned_cols=96  Identities=23%  Similarity=0.283  Sum_probs=65.1

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHcc-CCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGV-RNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||.+  ....++.++||||+|+++++++++ .+|+.....      ..    .......+.....+...+.  
T Consensus       164 ~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~--  229 (262)
T cd05058         164 LPVKWMALESL--QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDS------FD----ITVYLLQGRRLLQPEYCPD--  229 (262)
T ss_pred             CCccccChhHh--ccCccchHHHHHHHHHHHHHHHcCCCCCCCCCCH------HH----HHHHHhcCCCCCCCCcCCH--
Confidence            45679999987  456788999999999999999995 445543211      11    1111222222222232333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                           .+.+++..||+.+|++||++.+|+..|+++.
T Consensus       230 -----~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         230 -----PLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             -----HHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence                 4556677799999999999999999998765

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.65  E-value=4e-16  Score=103.51  Aligned_cols=96  Identities=20%  Similarity=0.333  Sum_probs=65.8

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||++  ....++.++||||+|++++++++ |..||......     ..    ....+..+.....+...+.  
T Consensus       278 ~~~~y~aPE~~--~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~--  344 (375)
T cd05104         278 LPVKWMAPESI--FNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVD-----SK----FYKMIKEGYRMLSPECAPS--  344 (375)
T ss_pred             CCcceeChhHh--cCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch-----HH----HHHHHHhCccCCCCCCCCH--
Confidence            34579999998  55678899999999999999997 77777543211     01    1222222222222332333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+..++..||+.||++||++.+|++.|++.
T Consensus       345 -----~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         345 -----EMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             -----HHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence                 455666669999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.65  E-value=7.7e-16  Score=97.56  Aligned_cols=99  Identities=17%  Similarity=0.266  Sum_probs=67.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc-CCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH-GLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   82 (133)
                      ..|+..|+|||.+  ....++.++|+||+|++++++++|..|+.......       .. ....+.....+..+ ...+ 
T Consensus       166 ~~~~~~~~aPE~~--~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~-  234 (267)
T cd08228         166 LVGTPYYMSPERI--HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------FS-LCQKIEQCDYPPLPTEHYS-  234 (267)
T ss_pred             CCCCccccChhhh--ccCCCCchhhHHHHHHHHHHHhcCCCCCccccccH-------HH-HHHHHhcCCCCCCChhhcC-
Confidence            4578899999988  45567889999999999999999999986432211       11 11222221111111 1122 


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                            ..+.+++.+||+.+|++||++.+|++.++.+
T Consensus       235 ------~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~  265 (267)
T cd08228         235 ------EKLRELVSMCIYPDPDQRPDIGYVHQIAKQM  265 (267)
T ss_pred             ------HHHHHHHHHHCCCCcccCcCHHHHHHHHHHh
Confidence                  3455666679999999999999999998865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.65  E-value=5.8e-16  Score=98.99  Aligned_cols=95  Identities=18%  Similarity=0.273  Sum_probs=65.9

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|++||.+  ....++.++|+||+|++++++++ |..|+.+.....          .............+...+. 
T Consensus       187 ~~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  253 (283)
T cd05090         187 LLPIRWMPPEAI--MYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSNQE----------VIEMVRKRQLLPCSEDCPP-  253 (283)
T ss_pred             CccceecChHHh--ccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHHcCCcCCCCCCCCH-
Confidence            345679999987  45678899999999999999998 877876432211          2222222222222333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                            .+..++..||+.||++||++.+|.+.|.+
T Consensus       254 ------~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         254 ------RMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             ------HHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence                  44556666999999999999999998875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.65  E-value=4.7e-16  Score=99.33  Aligned_cols=94  Identities=16%  Similarity=0.306  Sum_probs=64.5

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+||+|++++++++ |..|+.......          .......+.....+...+.  
T Consensus       186 ~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--  251 (280)
T cd05092         186 LPIRWMPPESI--LYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLSNTE----------AIECITQGRELERPRTCPP--  251 (280)
T ss_pred             ccccccCHHHh--ccCCcCchhhHHHHHHHHHHHHcCCCCCCccCCHHH----------HHHHHHcCccCCCCCCCCH--
Confidence            45679999987  55678899999999999999998 777875432211          1111122222222333344  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+..++.+||+.||.+||++.+|...|++
T Consensus       252 -----~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         252 -----EVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             -----HHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence                 34455566999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.65  E-value=6e-16  Score=97.60  Aligned_cols=93  Identities=25%  Similarity=0.384  Sum_probs=64.1

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||++  ....++.++|+||+|++++++++ |+.|+.......          ....+........+...+.  
T Consensus       163 ~~~~y~aPE~~--~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~~~----------~~~~i~~~~~~~~~~~~~~--  228 (256)
T cd05114         163 FPVKWSPPEVF--NFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYE----------VVEMISRGFRLYRPKLASM--  228 (256)
T ss_pred             CchhhCChhhc--ccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHHCCCCCCCCCCCCH--
Confidence            45579999998  45678889999999999999998 788876432211          1112222222222332232  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                           .+..++..||+.+|++||++.++++.|.
T Consensus       229 -----~~~~li~~c~~~~p~~Rps~~~l~~~l~  256 (256)
T cd05114         229 -----TVYEVMYSCWHEKPEGRPTFAELLRAIT  256 (256)
T ss_pred             -----HHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                 4566677799999999999999998763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.65  E-value=4.2e-16  Score=100.05  Aligned_cols=96  Identities=25%  Similarity=0.355  Sum_probs=66.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++||||||++++++++ |..|+.......          .............+...+.  
T Consensus       196 ~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--  261 (293)
T cd05053         196 LPVKWMAPEAL--FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE----------LFKLLKEGYRMEKPQNCTQ--  261 (293)
T ss_pred             CCccccCHHHh--ccCCcCcccceeehhhHHHHHhcCCCCCCCCCCHHH----------HHHHHHcCCcCCCCCCCCH--
Confidence            34679999987  45678899999999999999987 777775432211          1222222222222222233  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                           .+..++..||+.||++||++.+|++.|+++.
T Consensus       262 -----~~~~li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         262 -----ELYHLMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             -----HHHHHHHHHcccCcccCcCHHHHHHHHHHhh
Confidence                 4556667799999999999999999998765

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.65  E-value=3.4e-16  Score=100.80  Aligned_cols=99  Identities=22%  Similarity=0.345  Sum_probs=68.3

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||++  ....++.++||||+|++++++++ |..||.......          .......+.....+...+.   
T Consensus       181 ~~~y~aPE~~--~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  245 (297)
T cd05089         181 PVRWMAIESL--NYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMTCAE----------LYEKLPQGYRMEKPRNCDD---  245 (297)
T ss_pred             CccccCchhh--ccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHhcCCCCCCCCCCCH---
Confidence            3469999987  45678899999999999999997 888886432211          1111222222222333333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                          .+.+++.+||+.+|.+||++.+|++.|+++.....
T Consensus       246 ----~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~  280 (297)
T cd05089         246 ----EVYELMRQCWRDRPYERPPFAQISVQLSRMLEARK  280 (297)
T ss_pred             ----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence                34556666999999999999999999888776543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.64  E-value=4.7e-16  Score=99.13  Aligned_cols=94  Identities=19%  Similarity=0.314  Sum_probs=64.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||.+  ....++.++|+||+|++++++++ +..|+......      .    .............+...+.  
T Consensus       183 ~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  248 (277)
T cd05062         183 LPVRWMSPESL--KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSNE------Q----VLRFVMEGGLLDKPDNCPD--  248 (277)
T ss_pred             cCHhhcChhHh--hcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHH------H----HHHHHHcCCcCCCCCCCCH--
Confidence            46679999998  45678899999999999999998 67777543221      1    1111112222222333333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+..++.+||+.||++||++.+++..|++
T Consensus       249 -----~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         249 -----MLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             -----HHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence                 45556667999999999999999998864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PTZ00284 protein kinase; Provisional

Probab=99.64  E-value=6.2e-16  Score=105.23  Aligned_cols=45  Identities=22%  Similarity=0.197  Sum_probs=40.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..+||..|+|||++  .+..++.++||||+||+++|+++|+.||...
T Consensus       304 ~~~gt~~Y~APE~~--~~~~~~~~~DiwSlGvil~elltG~~pf~~~  348 (467)
T PTZ00284        304 AIVSTRHYRSPEVV--LGLGWMYSTDMWSMGCIIYELYTGKLLYDTH  348 (467)
T ss_pred             cccCCccccCcHHh--hcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            45799999999998  5567899999999999999999999999754

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=3.8e-17  Score=112.65  Aligned_cols=98  Identities=21%  Similarity=0.336  Sum_probs=72.8

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      .++.||.-|||||++...-..|...+|||||||...||.+|++||........        .+....--...+.+|+..+
T Consensus       734 ETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqA--------AMFkVGmyKvHP~iPeels  805 (1226)
T KOG4279|consen  734 ETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQA--------AMFKVGMYKVHPPIPEELS  805 (1226)
T ss_pred             cccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhH--------hhhhhcceecCCCCcHHHH
Confidence            36889999999999965556899999999999999999999999987654321        1222222233445555555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....+++.+       |...||.+||+++++++
T Consensus       806 aeak~Filr-------cFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  806 AEAKNFILR-------CFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             HHHHHHHHH-------HcCCCcccCccHHHhcc
Confidence            555555554       99999999999999986

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.64  E-value=6.9e-16  Score=97.97  Aligned_cols=95  Identities=27%  Similarity=0.375  Sum_probs=66.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||++  ....++.++||||+|++++|+++ |..|+......      .    .......+.....+...+.  
T Consensus       177 ~~~~~~~pe~~--~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  242 (273)
T cd05035         177 MPVKWIAIESL--ADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVENH------E----IYDYLRHGNRLKQPEDCLD--  242 (273)
T ss_pred             CCccccCHhhc--ccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCcCCCH--
Confidence            35679999987  55678899999999999999998 77777543221      1    1222222222223333333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+..++..||+.||++||++.+|+..|+++
T Consensus       243 -----~~~~li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         243 -----ELYDLMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             -----HHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                 455666669999999999999999998875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.64  E-value=6.4e-16  Score=98.39  Aligned_cols=95  Identities=24%  Similarity=0.341  Sum_probs=66.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||.+  ....++.++|+||+|++++++++ +..||......      .    .............+...+. 
T Consensus       182 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~-  248 (277)
T cd05032         182 LLPVRWMAPESL--KDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSNE------E----VLKFVIDGGHLDLPENCPD-  248 (277)
T ss_pred             CccccccCHHHH--hcCCCCcccchHHHHHHHHHhhccCCCCCccCCHH------H----HHHHHhcCCCCCCCCCCCH-
Confidence            356789999987  45678889999999999999998 88887543211      1    1112222222233333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                            .+..++..||+.+|++||++.+|+..|++
T Consensus       249 ------~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         249 ------KLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             ------HHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence                  45566677999999999999999998864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.64  E-value=4.3e-16  Score=99.40  Aligned_cols=97  Identities=23%  Similarity=0.260  Sum_probs=67.9

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||++  ....++.++||||+|++++++++ |+.|+......      .    .............+...++  
T Consensus       181 ~~~~y~apE~~--~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  246 (280)
T cd05043         181 RPVKWMALESL--VNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDPF------E----MAAYLKDGYRLAQPINCPD--  246 (280)
T ss_pred             cchhccCHHHH--hcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCHH------H----HHHHHHcCCCCCCCCcCCH--
Confidence            46679999987  45678899999999999999998 88888653221      1    1112222222112222233  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                           .+.+++.+||+.||++||++.+|+..|+++.+
T Consensus       247 -----~~~~li~~~l~~~p~~Rps~~~~~~~l~~~~~  278 (280)
T cd05043         247 -----ELFAVMACCWALDPEERPSFSQLVQCLTDFHA  278 (280)
T ss_pred             -----HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence                 45667777999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.64  E-value=1.7e-15  Score=96.01  Aligned_cols=100  Identities=18%  Similarity=0.288  Sum_probs=67.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc-cCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR-HGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   82 (133)
                      ..|+..|+|||.+  ....++.++|+||+|++++++++|..|+.......       .. ..........+.. ....+.
T Consensus       166 ~~~~~~~~ape~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~  235 (267)
T cd08229         166 LVGTPYYMSPERI--HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-------YS-LCKKIEQCDYPPLPSDHYSE  235 (267)
T ss_pred             ccCCcCccCHHHh--cCCCccchhhHHHHHHHHHHHHhCCCCcccccchH-------HH-HhhhhhcCCCCCCCcccccH
Confidence            4678899999988  45677889999999999999999999986432210       01 1111111111111 111222


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                             .+..++.+||+.||++||++.+|++.++++.
T Consensus       236 -------~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         236 -------ELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             -------HHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence                   4555556699999999999999999888764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.63  E-value=6.9e-16  Score=98.98  Aligned_cols=97  Identities=24%  Similarity=0.326  Sum_probs=68.5

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++||||+|++++++++ |..|+.......          .............+...+.  
T Consensus       191 ~~~~y~apE~~--~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--  256 (290)
T cd05045         191 IPVKWMAIESL--FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPER----------LFNLLKTGYRMERPENCSE--  256 (290)
T ss_pred             CCccccCHHHH--ccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCCHHH----------HHHHHhCCCCCCCCCCCCH--
Confidence            45689999987  45678899999999999999998 888875432211          2222222222222333333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                           .+..++..||+.+|++||++.+++..|+++..
T Consensus       257 -----~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         257 -----EMYNLMLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             -----HHHHHHHHHccCCcccCCCHHHHHHHHHHHHh
Confidence                 45566667999999999999999999988754

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.63  E-value=5.1e-16  Score=105.90  Aligned_cols=93  Identities=19%  Similarity=0.242  Sum_probs=64.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||++  ....++.++||||+|++++++++|..||......         . ....+..+.....+...+.
T Consensus       230 ~~~gt~~y~aPE~~--~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~~~---------~-~~~~~~~~~~~~~~~~~s~  297 (478)
T PTZ00267        230 SFCGTPYYLAPELW--ERKRYSKKADMWSLGVILYELLTLHRPFKGPSQR---------E-IMQQVLYGKYDPFPCPVSS  297 (478)
T ss_pred             ccCCCccccCHhHh--CCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH---------H-HHHHHHhCCCCCCCccCCH
Confidence            35699999999998  5567899999999999999999999998643211         1 1111111212122333333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||+.||++||++.+++.
T Consensus       298 -------~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        298 -------GMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             -------HHHHHHHHHhccChhhCcCHHHHHh
Confidence                   3455556699999999999998864

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.63  E-value=7.5e-16  Score=97.34  Aligned_cols=94  Identities=22%  Similarity=0.306  Sum_probs=65.9

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+||+|++++++++ |..||.......          ....+..+.....+...+.   
T Consensus       161 ~~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  225 (257)
T cd05115         161 PLKWYAPECI--NFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGPE----------VMSFIEQGKRLDCPAECPP---  225 (257)
T ss_pred             CcccCCHHHH--ccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCCHHH----------HHHHHHCCCCCCCCCCCCH---
Confidence            4679999987  45678889999999999999986 888886542211          2222222222222333333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                          .+..++.+||+.||++||++.+|.+.|+..
T Consensus       226 ----~l~~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         226 ----EMYALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             ----HHHHHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence                455566779999999999999999998764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.63  E-value=1.4e-15  Score=96.18  Aligned_cols=94  Identities=23%  Similarity=0.319  Sum_probs=64.5

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||..  ....++.++|+||+|++++++++ |..|+......      .    ....+........+...+.  
T Consensus       165 ~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  230 (260)
T cd05070         165 FPIKWTAPEAA--LYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNR------E----VLEQVERGYRMPCPQDCPI--  230 (260)
T ss_pred             CCccccChHHH--hcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCCHH------H----HHHHHHcCCCCCCCCcCCH--
Confidence            45579999987  45678889999999999999998 77887543211      1    1111222212222222333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+.+++.+||+.+|++||++.++...|++
T Consensus       231 -----~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         231 -----SLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             -----HHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                 45566666999999999999999998875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.63  E-value=1.5e-15  Score=96.02  Aligned_cols=94  Identities=26%  Similarity=0.402  Sum_probs=65.7

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||++  ....++.++|+||+|++++++++ |..||.......          ....+........+...+.  
T Consensus       165 ~~~~y~~pe~~--~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--  230 (260)
T cd05067         165 FPIKWTAPEAI--NYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMTNPE----------VIQNLERGYRMPRPDNCPE--  230 (260)
T ss_pred             ccccccCHHHh--ccCCcCcccchHHHHHHHHHHHhCCCCCCCCCChHH----------HHHHHHcCCCCCCCCCCCH--
Confidence            45679999988  55677889999999999999998 888886432211          1112222222222333333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+..++.+||+.+|++||+++++...|++
T Consensus       231 -----~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         231 -----ELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             -----HHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence                 35556666999999999999999998875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.63  E-value=1.1e-15  Score=97.41  Aligned_cols=93  Identities=19%  Similarity=0.327  Sum_probs=63.5

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||++  ....++.++||||+|++++++++ |..||.......          .............+...+.   
T Consensus       184 ~~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  248 (277)
T cd05036         184 PIKWMPPEAF--LDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRTNQE----------VMEFVTGGGRLDPPKGCPG---  248 (277)
T ss_pred             cHhhCCHHHH--hcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHHcCCcCCCCCCCCH---
Confidence            3569999998  45678999999999999999986 888876432211          1111111111122232333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                          .+..++..||+.+|++||++.+|++.|++
T Consensus       249 ----~~~~~i~~cl~~~p~~Rps~~~vl~~l~~  277 (277)
T cd05036         249 ----PVYRIMTDCWQHTPEDRPNFATILERIQY  277 (277)
T ss_pred             ----HHHHHHHHHcCCCcccCcCHHHHHHHhhC
Confidence                45566667999999999999999998763

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.63  E-value=1.3e-15  Score=96.64  Aligned_cols=93  Identities=20%  Similarity=0.307  Sum_probs=64.6

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      ..|++||++  ....++.++|+||+|++++++++ |..|+......      .    ....+........+...+     
T Consensus       174 ~~y~~PE~~--~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~~------~----~~~~i~~~~~~~~~~~~~-----  236 (268)
T cd05063         174 IRWTAPEAI--AYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSNH------E----VMKAINDGFRLPAPMDCP-----  236 (268)
T ss_pred             ceecCHHHh--hcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCHH------H----HHHHHhcCCCCCCCCCCC-----
Confidence            469999988  45678899999999999999987 88888643221      1    111122211111122222     


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                        ..+..++.+||+.+|++||++.+|++.|+++
T Consensus       237 --~~~~~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         237 --SAVYQLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             --HHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence              3456777779999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.63  E-value=1.2e-15  Score=96.28  Aligned_cols=95  Identities=24%  Similarity=0.235  Sum_probs=64.9

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||++  ....++.++|+||+|++++++++ |+.|+......         . ....+........+...+.  
T Consensus       161 ~~~~y~aPE~~--~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~--  226 (256)
T cd05082         161 LPVKWTAPEAL--REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK---------D-VVPRVEKGYKMDAPDGCPP--  226 (256)
T ss_pred             cceeecCHHHH--ccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCCHH---------H-HHHHHhcCCCCCCCCCCCH--
Confidence            45679999988  45678889999999999999997 87777533211         0 1111222222222233333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+..++.+||+.+|++||++.++++.|+++
T Consensus       227 -----~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         227 -----VVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             -----HHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence                 445556669999999999999999998764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.62  E-value=1.4e-15  Score=96.44  Aligned_cols=95  Identities=21%  Similarity=0.291  Sum_probs=65.7

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+||+|++++++++ |..|+......      .    ....+........+...+.  
T Consensus       170 ~~~~y~~Pe~~--~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  235 (266)
T cd05033         170 IPIRWTAPEAI--AYRKFTSASDVWSFGIVMWEVMSYGERPYWDMSNQ------D----VIKAVEDGYRLPPPMDCPS--  235 (266)
T ss_pred             CCccccChhhh--ccCCCccccchHHHHHHHHHHHccCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH--
Confidence            34679999988  55678899999999999999987 88887543211      1    1222222211122222333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+.+++..||+.+|++||++++|++.|+++
T Consensus       236 -----~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         236 -----ALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             -----HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                 455667779999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.62  E-value=1e-15  Score=99.38  Aligned_cols=96  Identities=20%  Similarity=0.293  Sum_probs=66.7

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++||||||+++|++++ |..|+.......          .............+...+.   
T Consensus       174 ~~~y~apE~~--~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  238 (316)
T cd05108         174 PIKWMALESI--LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----------ISSILEKGERLPQPPICTI---  238 (316)
T ss_pred             ceeecChHHh--ccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHhCCCCCCCCCCCCH---
Confidence            5679999988  55678899999999999999987 888876432111          1222222222222332333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                          .+..++..||+.+|++||++.+|+..+.++..
T Consensus       239 ----~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~  270 (316)
T cd05108         239 ----DVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  270 (316)
T ss_pred             ----HHHHHHHHHccCChhhCcCHHHHHHHHHHHHc
Confidence                34566667999999999999999998876654

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.62  E-value=1.3e-15  Score=96.68  Aligned_cols=94  Identities=21%  Similarity=0.375  Sum_probs=64.5

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++||||+|++++++++ |..|+......      .    ....+........+...+.  
T Consensus       175 ~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  240 (269)
T cd05044         175 LPVRWMAPESL--LDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNNQ------E----VLQHVTAGGRLQKPENCPD--  240 (269)
T ss_pred             CCccccCHHHH--ccCCcccchhHHHHHHHHHHHHHcCCCCCcccCHH------H----HHHHHhcCCccCCcccchH--
Confidence            45679999988  45678899999999999999997 88887543211      1    1111111222222222233  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+..++.+||..+|++||++.+|+..|++
T Consensus       241 -----~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         241 -----KIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             -----HHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence                 45566677999999999999999998864

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.62  E-value=1.6e-15  Score=96.33  Aligned_cols=95  Identities=26%  Similarity=0.296  Sum_probs=65.3

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||..  ....++.++|+||+|++++++++ +..|+......      .    ....+..+.....+...+.  
T Consensus       176 ~~~~~~~pe~~--~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  241 (272)
T cd05075         176 MPVKWIAIESL--ADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVENS------E----IYDYLRQGNRLKQPPDCLD--  241 (272)
T ss_pred             CCcccCCHHHc--cCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH--
Confidence            45679999987  45678899999999999999998 67777543211      1    2222222222222222233  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+..++..||+.||++||++.+|++.|+++
T Consensus       242 -----~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         242 -----GLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             -----HHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence                 355666679999999999999999998864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.62  E-value=1.6e-15  Score=97.97  Aligned_cols=96  Identities=20%  Similarity=0.344  Sum_probs=66.0

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||.+  ....++.++||||+|++++++++ |..|+.......     .    .......+.....+...+.  
T Consensus       205 ~~~~y~aPE~~--~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~--  271 (302)
T cd05055         205 LPVKWMAPESI--FNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDS-----K----FYKLIKEGYRMAQPEHAPA--  271 (302)
T ss_pred             cccccCCHhhh--ccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCchH-----H----HHHHHHcCCcCCCCCCCCH--
Confidence            45679999987  45678889999999999999998 888876433211     0    1112222212222222333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+.+++.+||+.+|++||++.+|+..|++.
T Consensus       272 -----~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         272 -----EIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             -----HHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence                 455566669999999999999999998864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.62  E-value=1e-15  Score=96.33  Aligned_cols=92  Identities=15%  Similarity=0.195  Sum_probs=63.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||+.  ....++.++|+||+|++++++++|..|+......      .    .............+...+. 
T Consensus       161 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~-  227 (256)
T cd08529         161 IVGTPYYLSPELC--EDKPYNEKSDVWALGVVLYECCTGKHPFDANNQG------A----LILKIIRGVFPPVSQMYSQ-  227 (256)
T ss_pred             cccCccccCHHHh--cCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH------H----HHHHHHcCCCCCCccccCH-
Confidence            3578889999998  4566788999999999999999999998644311      0    1111222222222222333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++.+||+.+|++||++.+++.
T Consensus       228 ------~~~~~i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         228 ------QLAQLIDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             ------HHHHHHHHHccCCcccCcCHHHHhh
Confidence                  4555666699999999999999876

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.62  E-value=2e-15  Score=98.25  Aligned_cols=92  Identities=22%  Similarity=0.323  Sum_probs=69.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC--CC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG--LV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   80 (133)
                      +++||.-|+|||++  .+......+|+|+||+++|||+.|..||.+......         +...+..  ++..|+  ..
T Consensus       294 SFVGThEYlAPEvI--~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~T---------l~NIv~~--~l~Fp~~~~v  360 (459)
T KOG0610|consen  294 SFVGTHEYLAPEVI--RGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKET---------LRNIVGQ--PLKFPEEPEV  360 (459)
T ss_pred             ccccccccccceee--ecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhh---------HHHHhcC--CCcCCCCCcc
Confidence            58999999999999  567789999999999999999999999998765431         2222222  222222  34


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCC----HHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSS----MSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps----~~~v~~  114 (133)
                      +....+++++++       .+||.+|..    +.+|.+
T Consensus       361 s~~akDLIr~LL-------vKdP~kRlg~~rGA~eIK~  391 (459)
T KOG0610|consen  361 SSAAKDLIRKLL-------VKDPSKRLGSKRGAAEIKR  391 (459)
T ss_pred             hhHHHHHHHHHh-------ccChhhhhccccchHHhhc
Confidence            566777888765       999999998    777765

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.62  E-value=8.4e-16  Score=102.82  Aligned_cols=93  Identities=17%  Similarity=0.316  Sum_probs=74.1

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ++++||-.|.+||++  ..+..+..+|+|+|||+++.|+.|.+||.+.+...          +.+.+.. .....|...+
T Consensus       245 ~SFVGTAeYVSPElL--~~~~~~~~sDiWAlGCilyQmlaG~PPFra~Neyl----------iFqkI~~-l~y~fp~~fp  311 (604)
T KOG0592|consen  245 SSFVGTAEYVSPELL--NDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYL----------IFQKIQA-LDYEFPEGFP  311 (604)
T ss_pred             cceeeeecccCHHHh--cCCCCCcccchHHHHHHHHHHhcCCCCCccccHHH----------HHHHHHH-hcccCCCCCC
Confidence            469999999999999  67788899999999999999999999998654421          1121111 1234577788


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +...+++++++       ..||++|+++.+|.+
T Consensus       312 ~~a~dLv~KLL-------v~dp~~Rlt~~qIk~  337 (604)
T KOG0592|consen  312 EDARDLIKKLL-------VRDPSDRLTSQQIKA  337 (604)
T ss_pred             HHHHHHHHHHH-------ccCccccccHHHHhh
Confidence            88889999876       899999999999976

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.62  E-value=2.8e-15  Score=94.86  Aligned_cols=100  Identities=19%  Similarity=0.299  Sum_probs=67.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC-CCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG-LVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|+.|+......       ... .......+.....+. ..+.
T Consensus       166 ~~~~~~y~apE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~  235 (267)
T cd08224         166 LVGTPYYMSPERI--HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN-------LYS-LCKKIEKCDYPPLPADHYSE  235 (267)
T ss_pred             ecCCccccCHHHh--ccCCCCchhcHHHHHHHHHHHHHCCCCcccCCcc-------HHH-HHhhhhcCCCCCCChhhcCH
Confidence            4578889999988  4567888999999999999999999988543221       000 111111111111121 2222


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                             .+..++..||+.+|++||++.+|+..|+++.
T Consensus       236 -------~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         236 -------ELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             -------HHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence                   3445566699999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.62  E-value=2e-15  Score=95.41  Aligned_cols=93  Identities=23%  Similarity=0.311  Sum_probs=64.4

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      ..|++||++  ....++.++|+||+|++++++++ |..|+.......          .............+...+.    
T Consensus       168 ~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~----  231 (261)
T cd05068         168 IKWTAPEAA--LYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAE----------VLQQVDQGYRMPCPPGCPK----  231 (261)
T ss_pred             eeccCcccc--ccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCHHH----------HHHHHHcCCCCCCCCcCCH----
Confidence            469999987  45678899999999999999998 888876432211          1111111111112222333    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                         .+..++.+||+.+|++||++.+|...|++.
T Consensus       232 ---~~~~li~~~l~~~P~~Rp~~~~l~~~l~~~  261 (261)
T cd05068         232 ---ELYDIMLDCWKEDPDDRPTFETLQWKLEDF  261 (261)
T ss_pred             ---HHHHHHHHHhhcCcccCCCHHHHHHHHhcC
Confidence               455666779999999999999999999863

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.62  E-value=1.9e-15  Score=95.55  Aligned_cols=94  Identities=24%  Similarity=0.348  Sum_probs=64.6

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||..  ....++.++|+||+|++++++++ |..|+......      .    .............+...+.  
T Consensus       165 ~~~~y~~Pe~~--~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  230 (260)
T cd05069         165 FPIKWTAPEAA--LYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNR------E----VLEQVERGYRMPCPQGCPE--  230 (260)
T ss_pred             cchhhCCHHHh--ccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCcccCH--
Confidence            45679999987  55678899999999999999998 78887643221      1    1111121211122222233  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+..++.+||+.||++||++.+|.+.|++
T Consensus       231 -----~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         231 -----SLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             -----HHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence                 45556666999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.62  E-value=1.2e-15  Score=96.97  Aligned_cols=95  Identities=21%  Similarity=0.333  Sum_probs=65.4

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||++  ....++.++|+||||++++++++ |..||.......          .............+...+.   
T Consensus       174 ~~~y~apE~~--~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  238 (270)
T cd05047         174 PVRWMAIESL--NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE----------LYEKLPQGYRLEKPLNCDD---  238 (270)
T ss_pred             ccccCChHHH--ccCCCCchhhHHHHHHHHHHHHcCCCCCccccCHHH----------HHHHHhCCCCCCCCCcCCH---
Confidence            4569999987  45678889999999999999997 888875432110          1111111111112222222   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                          .+..++.+||+.+|.+||++.+++..|+++.
T Consensus       239 ----~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         239 ----EVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             ----HHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence                4556777799999999999999999998765

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.62  E-value=1.3e-15  Score=96.15  Aligned_cols=93  Identities=22%  Similarity=0.313  Sum_probs=63.6

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||..  ....++.++|+||+|++++++++ |..|+......      .    ....+........+...+   
T Consensus       163 ~~~~y~~pe~~--~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~---  227 (256)
T cd05113         163 FPVRWSPPEVL--LYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNNS------E----TVEKVSQGLRLYRPHLAS---  227 (256)
T ss_pred             cChhhCCHHHH--hcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCHH------H----HHHHHhcCCCCCCCCCCC---
Confidence            45679999988  45578889999999999999998 88887543221      1    111222222222222223   


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                          ..+..++..||+.+|.+||++.+|+..|+
T Consensus       228 ----~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         228 ----EKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             ----HHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence                34566666799999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.61  E-value=1.6e-15  Score=101.32  Aligned_cols=99  Identities=19%  Similarity=0.315  Sum_probs=68.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .|+..|+|||.+  ....++.++||||+|++++++++ |..|+.......         ........+.....+...+. 
T Consensus       300 ~~~~~y~aPE~~--~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-  367 (400)
T cd05105         300 FLPVKWMAPESI--FDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDS---------TFYNKIKSGYRMAKPDHATQ-  367 (400)
T ss_pred             CCCcceEChhhh--cCCCCCchhhHHHHHHHHHHHHHCCCCCCcccchhH---------HHHHHHhcCCCCCCCccCCH-
Confidence            356789999988  45678899999999999999986 778876432211         01222222222222232333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||+.||++||++.+|.+.|+++..
T Consensus       368 ------~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~~  399 (400)
T cd05105         368 ------EVYDIMVKCWNSEPEKRPSFLHLSDIVESLLP  399 (400)
T ss_pred             ------HHHHHHHHHCccCHhHCcCHHHHHHHHHHHcC
Confidence                  45566677999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.61  E-value=2e-15  Score=95.37  Aligned_cols=95  Identities=24%  Similarity=0.346  Sum_probs=65.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+|++|++++++++ |..|+......      .    .............+...+.  
T Consensus       166 ~~~~~~~PE~~--~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  231 (261)
T cd05148         166 IPYKWTAPEAA--SHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNNH------E----VYDQITAGYRMPCPAKCPQ--  231 (261)
T ss_pred             CceEecCHHHH--ccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCHH------H----HHHHHHhCCcCCCCCCCCH--
Confidence            45679999987  45678889999999999999998 78888543211      1    1111111212222222333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+.+++.+||+.||.+||++.++.+.|+++
T Consensus       232 -----~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         232 -----EIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             -----HHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence                 455666779999999999999999999863

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.61  E-value=1.3e-15  Score=97.21  Aligned_cols=98  Identities=21%  Similarity=0.292  Sum_probs=67.2

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++||||+|++++|+++ +..|+......      .    ....+........+...+.  
T Consensus       173 ~~~~y~~PE~~--~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  238 (279)
T cd05109         173 VPIKWMALESI--LHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPAR------E----IPDLLEKGERLPQPPICTI--  238 (279)
T ss_pred             cchhhCCHHHh--ccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCHH------H----HHHHHHCCCcCCCCccCCH--
Confidence            35679999988  55678899999999999999988 77887543221      1    1112222222222222233  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                           .+..++..||+.||+.||++.+++..|+++.+.
T Consensus       239 -----~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         239 -----DVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             -----HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence                 355666679999999999999999988877544

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.61  E-value=1.4e-15  Score=98.17  Aligned_cols=98  Identities=24%  Similarity=0.350  Sum_probs=66.9

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||++  ....++.++||||+|++++++++ +..|+......          .....+........+...+.  
T Consensus       201 ~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~~~--  266 (304)
T cd05101         201 LPVKWMAPEAL--FDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE----------ELFKLLKEGHRMDKPANCTN--  266 (304)
T ss_pred             CCceeeCchhh--ccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH----------HHHHHHHcCCcCCCCCCCCH--
Confidence            45679999988  45678899999999999999998 66666433211          12222222222222222333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                           .+..++.+||+.+|++||++.+|++.|+++.+.
T Consensus       267 -----~~~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         267 -----ELYMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             -----HHHHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence                 455566669999999999999999999887643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.61  E-value=2.7e-15  Score=95.22  Aligned_cols=97  Identities=18%  Similarity=0.277  Sum_probs=66.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc-CCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH-GLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   81 (133)
                      ...|+..|++||.+  ....++.++|+||+|+++|++++|..|+.......          .............+ ...+
T Consensus       172 ~~~~~~~~~~Pe~~--~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  239 (269)
T cd08528         172 SVVGTILYSCPEIV--KNEPYGEKADVWAFGCILYQMCTLQPPFYSTNMLS----------LATKIVEAVYEPLPEGMYS  239 (269)
T ss_pred             cccCcccCcChhhh--cCCCCchHHHHHHHHHHHHHHHhCCCcccccCHHH----------HHHHHhhccCCcCCcccCC
Confidence            34578899999998  45678899999999999999999999886432111          11111111111111 1223


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                      .       .+..++.+||+.||++||++.+|...+++
T Consensus       240 ~-------~l~~li~~cl~~~p~~Rp~~~e~~~~~~~  269 (269)
T cd08528         240 E-------DVTDVITSCLTPDAEARPDIIQVSAMISD  269 (269)
T ss_pred             H-------HHHHHHHHHCCCCCccCCCHHHHHHHhcC
Confidence            3       34556666999999999999999988763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.61  E-value=3.3e-15  Score=95.54  Aligned_cols=106  Identities=22%  Similarity=0.232  Sum_probs=66.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCC-----CcchhhhHHHHhhhcCCccccccCCC
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTS-----STEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ++..|++||.+  ....++.++||||+|++++++++|..|+........     ......................+...
T Consensus       172 ~~~~~~~PE~~--~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (283)
T cd05080         172 SPVFWYAVECL--KENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNC  249 (283)
T ss_pred             CCceeeCHhHh--cccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhhhcCCCCCCCCCC
Confidence            45569999987  456788999999999999999999988754321100     00000000011111111111112222


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                      +       ..+..++..||+.+|++||++++|+..|+++.
T Consensus       250 ~-------~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         250 P-------QEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             C-------HHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            2       35666677799999999999999999998764

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.61  E-value=4.9e-15  Score=96.82  Aligned_cols=43  Identities=30%  Similarity=0.424  Sum_probs=38.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|+.||..
T Consensus       162 ~~g~~~y~aPE~~--~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         162 FVGTRSYMSPERL--QGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             CCCCcCcCCHhHh--cCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            4689999999998  456788999999999999999999999864

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.61  E-value=1.5e-15  Score=93.41  Aligned_cols=93  Identities=24%  Similarity=0.389  Sum_probs=70.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   79 (133)
                      +++||+.||+||++  ....|+..+|||+.|++++-++.|.+||.+.....          +.+.+..+.   +...-..
T Consensus       171 G~~GtP~fmaPEvv--rkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~r----------lye~I~~g~yd~~~~~w~~  238 (355)
T KOG0033|consen  171 GFAGTPGYLSPEVL--KKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHR----------LYEQIKAGAYDYPSPEWDT  238 (355)
T ss_pred             cccCCCcccCHHHh--hcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHH----------HHHHHhccccCCCCcccCc
Confidence            46899999999999  67799999999999999999999999998743322          222222221   1112234


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +++...+++++|+       ..||++|.|+.|.++
T Consensus       239 is~~Ak~LvrrML-------~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  239 VTPEAKSLIRRML-------TVNPKKRITADEALK  266 (355)
T ss_pred             CCHHHHHHHHHHh-------ccChhhhccHHHHhC
Confidence            6777888888854       899999999998764

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.61  E-value=2.5e-15  Score=95.14  Aligned_cols=96  Identities=22%  Similarity=0.294  Sum_probs=65.9

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||..  ....++.++|+||+|++++++++ +..||.......          .............+..     
T Consensus       165 ~~~~y~~PE~~--~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~-----  227 (262)
T cd05071         165 FPIKWTAPEAA--LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNRE----------VLDQVERGYRMPCPPE-----  227 (262)
T ss_pred             ccceecCHhHh--ccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCChHH----------HHHHHhcCCCCCCccc-----
Confidence            45679999987  55678999999999999999999 777775432110          1111111111111111     


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                        ....+..++..||+.||++||++.++++.|++..
T Consensus       228 --~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~~  261 (262)
T cd05071         228 --CPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  261 (262)
T ss_pred             --cCHHHHHHHHHHccCCcccCCCHHHHHHHHHHhc
Confidence              2235667777799999999999999999998753

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.61  E-value=5.1e-16  Score=100.23  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc--cCCCCCCCCCCCCCcchhhhHHHHhhhcCC---ccccccCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG--VRNNTASGVTHTSSTEMYFPDWFYKLLEPG---EDLKRHGL   79 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   79 (133)
                      .++..|+|||++  ....++.++||||+|++++++++  +..|+......      .............   .....+..
T Consensus       201 ~~~~~y~aPE~~--~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  272 (304)
T cd05096         201 VLPIRWMAWECI--LMGKFTTASDVWAFGVTLWEILMLCKEQPYGELTDE------QVIENAGEFFRDQGRQVYLFRPPP  272 (304)
T ss_pred             CCCccccCHHHH--hcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCCHH------HHHHHHHHHhhhccccccccCCCC
Confidence            346789999988  45678999999999999999986  44555543211      1111111111111   01111222


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                      .+.       .+.+++.+||+.||++||++.+|.+.|++
T Consensus       273 ~~~-------~~~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         273 CPQ-------GLYELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             CCH-------HHHHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            222       45667777999999999999999988763

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.61  E-value=7.9e-16  Score=96.94  Aligned_cols=93  Identities=17%  Similarity=0.228  Sum_probs=63.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+..+.....+...+. 
T Consensus       160 ~~~~~~~~aPE~~--~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  226 (255)
T cd08219         160 YVGTPYYVPPEIW--ENMPYNNKSDIWSLGCILYELCTLKHPFQANSWKN----------LILKVCQGSYKPLPSHYSY-  226 (255)
T ss_pred             ccCCccccCHHHH--ccCCcCchhhhhhhchhheehhhccCCCCCCCHHH----------HHHHHhcCCCCCCCcccCH-
Confidence            4578889999988  45568889999999999999999999986432110          1111112222222333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                            .+..++..||+.||++||++.+|+..
T Consensus       227 ------~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         227 ------ELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             ------HHHHHHHHHHhCCcccCCCHHHHhhc
Confidence                  34455566999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.60  E-value=1.2e-15  Score=93.62  Aligned_cols=100  Identities=15%  Similarity=0.276  Sum_probs=67.2

Q ss_pred             ccccccCccccc-cccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCCCChh
Q 040499            6 GTVSYIAPEVFC-RNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGLVTEE   83 (133)
Q Consensus         6 gt~~~~ape~~~-~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   83 (133)
                      -|..|.|||.+. ..+...+.++||||+||++|+++.+..||.......  ..      +.--+..+. ..+.....++ 
T Consensus       200 Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~G--gS------laLAv~n~q~s~P~~~~yse-  270 (302)
T KOG2345|consen  200 CTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQG--GS------LALAVQNAQISIPNSSRYSE-  270 (302)
T ss_pred             CCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcC--Ce------EEEeeeccccccCCCCCccH-
Confidence            477899999871 133467899999999999999999999997543311  11      110011110 1111112334 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                            .+++++..|++.||.+||++.+++..++++.
T Consensus       271 ------~l~~lik~mlqvdP~qRP~i~~ll~~~d~Li  301 (302)
T KOG2345|consen  271 ------ALHQLIKSMLQVDPNQRPTIPELLSKLDDLI  301 (302)
T ss_pred             ------HHHHHHHHHhcCCcccCCCHHHHHHHHHhhc
Confidence                  5666666799999999999999999998765

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.60  E-value=2.8e-15  Score=96.07  Aligned_cols=94  Identities=17%  Similarity=0.283  Sum_probs=63.9

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||.+  ....++.++|+||+|++++++++ +..|+.+....         . ....+..+.....+...+   
T Consensus       194 ~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~~~---------~-~~~~~~~~~~~~~~~~~~---  258 (288)
T cd05050         194 IPIRWMPPESI--FYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMAHE---------E-VIYYVRDGNVLSCPDNCP---  258 (288)
T ss_pred             cChhhcCHHHH--hcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH---------H-HHHHHhcCCCCCCCCCCC---
Confidence            34569999987  55678899999999999999987 66676543211         1 111222222222222223   


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                          ..+..++..||+.||++||++.+|++.|++
T Consensus       259 ----~~l~~li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         259 ----LELYNLMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             ----HHHHHHHHHHcccCcccCCCHHHHHHHhhC
Confidence                345667777999999999999999998874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.60  E-value=2.1e-15  Score=100.86  Aligned_cols=98  Identities=17%  Similarity=0.242  Sum_probs=67.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .|+..|++||.+  ....++.++|+||+|++++|+++ +..|+.......         .....+..+..+..+...+. 
T Consensus       302 ~~~~~y~aPE~~--~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~~~~---------~~~~~~~~~~~~~~p~~~~~-  369 (401)
T cd05107         302 FLPLKWMAPESI--FNNLYTTLSDVWSFGILLWEIFTLGGTPYPELPMNE---------QFYNAIKRGYRMAKPAHASD-  369 (401)
T ss_pred             CCCCceeChHHh--cCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCCchH---------HHHHHHHcCCCCCCCCCCCH-
Confidence            456789999988  45667889999999999999998 777775432111         01122222222222333334 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                            .+..++..||+.+|..||++++|+..|+++.
T Consensus       370 ------~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         370 ------EIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             ------HHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence                  3455555699999999999999999998764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=9.1e-16  Score=104.86  Aligned_cols=88  Identities=18%  Similarity=0.366  Sum_probs=69.2

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +++|||+-|||||++  .+..|+..+|+|+|||++|||+.|+.||.+.....          +...+.. ..+..|...+
T Consensus       526 sTfCGTpey~aPEil--~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee----------~FdsI~~-d~~~yP~~ls  592 (694)
T KOG0694|consen  526 STFCGTPEFLAPEVL--TEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEE----------VFDSIVN-DEVRYPRFLS  592 (694)
T ss_pred             ccccCChhhcChhhh--ccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHH----------HHHHHhc-CCCCCCCccc
Confidence            579999999999999  67899999999999999999999999998765433          2222221 1334466677


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                      .+..+.+++++       .++|.+|..+
T Consensus       593 ~ea~~il~~ll-------~k~p~kRLG~  613 (694)
T KOG0694|consen  593 KEAIAIMRRLL-------RKNPEKRLGS  613 (694)
T ss_pred             HHHHHHHHHHh-------ccCcccccCC
Confidence            77777777755       9999999876

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.60  E-value=1.7e-15  Score=97.92  Aligned_cols=97  Identities=25%  Similarity=0.373  Sum_probs=66.7

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|+|||.+  ....++.++|+||+|++++++++ |..|+......          .....+........+...+.   
T Consensus       205 ~~~y~aPE~~--~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~~~---  269 (307)
T cd05098         205 PVKWMAPEAL--FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE----------ELFKLLKEGHRMDKPSNCTN---  269 (307)
T ss_pred             ccceeChHHh--ccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCCHH----------HHHHHHHcCCCCCCCCcCCH---
Confidence            4579999987  45678899999999999999998 77777533211          02222222222222333333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                          .+..++..||+.+|++||++.+|+..|+++.+.
T Consensus       270 ----~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~  302 (307)
T cd05098         270 ----ELYMMMRDCWHAVPSQRPTFKQLVEDLDRILAL  302 (307)
T ss_pred             ----HHHHHHHHHcccChhhCcCHHHHHHHHHHHHHH
Confidence                444556669999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.60  E-value=5e-16  Score=99.55  Aligned_cols=44  Identities=20%  Similarity=0.224  Sum_probs=38.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||...
T Consensus       169 ~~~~~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~g~~~f~~~  212 (290)
T cd07862         169 VVVTLWYRAPEVL--LQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  212 (290)
T ss_pred             ccccccccChHHH--hCCCCCCccchHHHHHHHHHHHcCCCCcCCC
Confidence            4588999999998  4567888999999999999999999998754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.60  E-value=3.7e-15  Score=95.96  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||+.  ....++.++||||+|++++++++|+.||...............+. ...+..+..  .....+  
T Consensus       193 ~~gt~~y~ape~~--~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~--  265 (294)
T PHA02882        193 HRGTLYYAGLDAH--NGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAAKCDF-IKRLHEGKI--KIKNAN--  265 (294)
T ss_pred             cCCCccccCHHHh--CCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHhHHHH-HHHhhhhhh--ccCCCC--
Confidence            4699999999988  566789999999999999999999999976533210000000111 111111110  111122  


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                           ..+..++..||..+|++||++.+|++.++
T Consensus       266 -----~~~~~~~~~~~~~~~~~rp~~~~l~~~~~  294 (294)
T PHA02882        266 -----KFIYDFIECVTKLSYEEKPDYDALIKIFD  294 (294)
T ss_pred             -----HHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence                 34555666699999999999999998763

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.60  E-value=3.4e-15  Score=95.04  Aligned_cols=92  Identities=21%  Similarity=0.331  Sum_probs=62.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC-CCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL-VTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..|+.......          ....+.....+..+.. .+.
T Consensus       158 ~~~~~~y~~PE~~--~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  225 (274)
T cd06609         158 FVGTPFWMAPEVI--KQSGYDEKADIWSLGITAIELAKGEPPLSDLHPMR----------VLFLIPKNNPPSLEGNKFSK  225 (274)
T ss_pred             ccCCccccChhhh--ccCCCCchhhHHHHHHHHHHHHhCCCCcccCchHH----------HHHHhhhcCCCCCcccccCH
Confidence            4578889999998  44568899999999999999999999986533211          1111111112222221 233


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||..+|++||++++++.
T Consensus       226 -------~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         226 -------PFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             -------HHHHHHHHHhhCChhhCcCHHHHhh
Confidence                   3445556699999999999999976

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.60  E-value=3e-15  Score=94.47  Aligned_cols=91  Identities=25%  Similarity=0.428  Sum_probs=62.9

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+||+|++++++++ +..|+.......          .............+...+.   
T Consensus       164 ~~~y~~Pe~~--~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  228 (256)
T cd05059         164 PVKWAPPEVF--DYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSNSE----------VVESVSAGYRLYRPKLAPT---  228 (256)
T ss_pred             CccccCHHHh--ccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCHHH----------HHHHHHcCCcCCCCCCCCH---
Confidence            3469999988  45678889999999999999998 777876432211          1122222222222333333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHH
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEML  116 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l  116 (133)
                          .+..++..||+.+|++||++.+|++.|
T Consensus       229 ----~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         229 ----EVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             ----HHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence                455666679999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.60  E-value=3.5e-15  Score=93.73  Aligned_cols=92  Identities=21%  Similarity=0.332  Sum_probs=63.3

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||++  ....++.++|+||+|++++++++ |..||.......          ....+........+...+.   
T Consensus       157 ~~~y~aPE~~--~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  221 (250)
T cd05085         157 PIKWTAPEAL--NYGRYSSESDVWSYGILLWETFSLGVCPYPGMTNQQ----------AREQVEKGYRMSCPQKCPD---  221 (250)
T ss_pred             cccccCHHHh--ccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCCHHH----------HHHHHHcCCCCCCCCCCCH---
Confidence            4569999988  55678889999999999999998 887875432111          1111222222222222333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                          .+.+++..||+.+|++||++.++++.|.
T Consensus       222 ----~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         222 ----DVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             ----HHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence                4555666699999999999999998875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.60  E-value=3.2e-15  Score=94.20  Aligned_cols=93  Identities=26%  Similarity=0.403  Sum_probs=63.7

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+||+|++++++++ |..|+......      .    ....+..+.....+...+   
T Consensus       163 ~~~~~~aPe~~--~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~---  227 (256)
T cd05112         163 FPVKWSSPEVF--SFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRSNS------E----VVETINAGFRLYKPRLAS---  227 (256)
T ss_pred             cchhhcCHhHh--ccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCCHH------H----HHHHHhCCCCCCCCCCCC---
Confidence            34679999987  45678889999999999999998 77787543211      1    111122221212223223   


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                          ..+.+++..||+.+|++||++.++++.|.
T Consensus       228 ----~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         228 ----QSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             ----HHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence                34666777799999999999999998774

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.60  E-value=4.7e-15  Score=93.75  Aligned_cols=94  Identities=26%  Similarity=0.442  Sum_probs=64.6

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||++  ....++.++|+||+|++++++++ |..|+......      .    ....+..+.....+...+.  
T Consensus       165 ~~~~y~~PE~~--~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  230 (260)
T cd05073         165 FPIKWTAPEAI--NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP------E----VIRALERGYRMPRPENCPE--  230 (260)
T ss_pred             ccccccCHhHh--ccCCcCccccchHHHHHHHHHHhcCCCCCCCCCHH------H----HHHHHhCCCCCCCcccCCH--
Confidence            44669999988  45678889999999999999998 88887643221      1    1122222222222222333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+..++.+||+.+|++||++.+++..|+.
T Consensus       231 -----~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         231 -----ELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             -----HHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence                 35555666999999999999999999875

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.60  E-value=4e-15  Score=93.73  Aligned_cols=95  Identities=26%  Similarity=0.416  Sum_probs=66.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..++..|+|||.+  ....++.++|+||+|++++++++ |..|+.......          ....+........+...+.
T Consensus       167 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  234 (262)
T cd00192         167 GKLPIRWMAPESL--KDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSNEE----------VLEYLRKGYRLPKPEYCPD  234 (262)
T ss_pred             CCcCccccCHHHh--ccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCHHH----------HHHHHHcCCCCCCCccCCh
Confidence            3467889999987  44578899999999999999998 578876542211          2222222222233333333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                             .+..++..||+.+|++||++.+++..|+
T Consensus       235 -------~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         235 -------ELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             -------HHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence                   4555666699999999999999998874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.60  E-value=6e-15  Score=94.21  Aligned_cols=100  Identities=19%  Similarity=0.279  Sum_probs=64.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc-cCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR-HGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   81 (133)
                      ..+||..|++||++  ....++.++|+||+|++++++++|..||........  .............. ..... ....+
T Consensus       152 ~~~~~~~y~aPE~~--~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~  226 (279)
T cd06619         152 TYVGTNAYMAPERI--SGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQG--SLMPLQLLQCIVDE-DPPVLPVGQFS  226 (279)
T ss_pred             CCCCChhhcCceee--cCCCCCCcchHHHHHHHHHHHHhCCCCchhhccccc--ccchHHHHHHHhcc-CCCCCCCCcCC
Confidence            35688999999998  456788999999999999999999999875432211  00001111111111 11111 11123


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       .+..++..||+.+|++||++++++.
T Consensus       227 ~-------~~~~li~~~l~~~P~~Rp~~~eil~  252 (279)
T cd06619         227 E-------KFVHFITQCMRKQPKERPAPENLMD  252 (279)
T ss_pred             H-------HHHHHHHHHhhCChhhCCCHHHHhc
Confidence            3       3445556699999999999999875

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.59  E-value=3.9e-15  Score=93.88  Aligned_cols=96  Identities=28%  Similarity=0.386  Sum_probs=65.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|++||++  ....++.++|+||+|++++++++ |..|+......      ..   .............+...+. 
T Consensus       161 ~~~~~y~~pE~~--~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~-  228 (257)
T cd05040         161 KVPFAWCAPESL--RTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSGS------QI---LKKIDKEGERLERPEACPQ-  228 (257)
T ss_pred             CCCceecCHHHh--cccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCHH------HH---HHHHHhcCCcCCCCccCCH-
Confidence            466789999987  55678889999999999999998 88887543211      11   1111111111122222233 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                            .+..++..||+.+|++||++.+|+..|.+
T Consensus       229 ------~~~~li~~~l~~~p~~Rps~~~~~~~l~~  257 (257)
T cd05040         229 ------DIYNVMLQCWAHNPADRPTFAALREFLPE  257 (257)
T ss_pred             ------HHHHHHHHHCCCCcccCCCHHHHHHHhcC
Confidence                  45556667999999999999999998753

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.59  E-value=1.6e-15  Score=97.51  Aligned_cols=99  Identities=18%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc--cCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---ccccCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG--VRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---LKRHGL   79 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~   79 (133)
                      .++..|++||.+  ....++.++||||+|++++++++  +..|+.....      ................   ...+..
T Consensus       193 ~~~~~y~aPE~~--~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  264 (296)
T cd05051         193 PLPIRWMAWESV--LLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTD------QQVIENAGHFFRDDGRQIYLPRPPN  264 (296)
T ss_pred             CCCceecCHHHh--hcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcCh------HHHHHHHHhccccccccccCCCccC
Confidence            356689999987  45578899999999999999987  4556543221      1111111111111110   011111


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                      .+       ..+.+++..||+.||++||++.+|++.|++
T Consensus       265 ~~-------~~l~~li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         265 CP-------KDIYELMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             CC-------HHHHHHHHHHhccChhcCCCHHHHHHHhcC
Confidence            12       246667777999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.59  E-value=1.9e-16  Score=114.36  Aligned_cols=96  Identities=22%  Similarity=0.323  Sum_probs=74.0

Q ss_pred             CCCccccccCcccccccc-CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNF-GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~-~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +.+||+.|||||++.+.. .....+.||||+|||+.||.+|+.|+........         ++..+..+..+..|...+
T Consensus      1397 ~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~a---------IMy~V~~gh~Pq~P~~ls 1467 (1509)
T KOG4645|consen 1397 SMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWA---------IMYHVAAGHKPQIPERLS 1467 (1509)
T ss_pred             hhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhH---------HHhHHhccCCCCCchhhh
Confidence            467999999999995422 3455689999999999999999999976543321         455566677777777766


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....+++..       |+..||.+|.++.|+++
T Consensus      1468 ~~g~dFle~-------Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1468 SEGRDFLEH-------CLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             HhHHHHHHH-------HHhcCchhhhHHHHHHH
Confidence            665555555       99999999999988876

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.59  E-value=4.9e-15  Score=94.12  Aligned_cols=96  Identities=22%  Similarity=0.308  Sum_probs=66.7

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+||+|++++++++ |..||.......          ....+........+...+.   
T Consensus       171 ~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  235 (270)
T cd05056         171 PIKWMAPESI--NFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKNND----------VIGRIENGERLPMPPNCPP---  235 (270)
T ss_pred             cccccChhhh--ccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCHHH----------HHHHHHcCCcCCCCCCCCH---
Confidence            3579999987  45678899999999999999886 888886442211          1112222222223333333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                          .+..++.+||..+|++||++.+++..|+++..
T Consensus       236 ----~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~  267 (270)
T cd05056         236 ----TLYSLMTKCWAYDPSKRPRFTELKAQLSDILQ  267 (270)
T ss_pred             ----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence                34455566999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.59  E-value=4.1e-15  Score=97.20  Aligned_cols=46  Identities=20%  Similarity=0.207  Sum_probs=38.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .+||..|+|||++......++.++||||+|++++++++|+.||...
T Consensus       166 ~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~  211 (338)
T cd07859         166 YVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGK  211 (338)
T ss_pred             CCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            4689999999987332357888999999999999999999998654

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.59  E-value=3.2e-15  Score=94.06  Aligned_cols=92  Identities=26%  Similarity=0.380  Sum_probs=62.4

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      ..|+|||.+  ....++.++|+||+|++++++++ +..|+......      .    .............+...+.    
T Consensus       160 ~~y~aPE~~--~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~----  223 (252)
T cd05084         160 VKWTAPEAL--NYGRYSSESDVWSFGILLWEAFSLGAVPYANLSNQ------Q----TREAIEQGVRLPCPELCPD----  223 (252)
T ss_pred             eeecCchhh--cCCCCChHHHHHHHHHHHHHHHhCCCCCccccCHH------H----HHHHHHcCCCCCCcccCCH----
Confidence            459999988  55678889999999999999997 77777543211      0    1111111212222333333    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                         .+..++.+||+.+|++||++.+|++.|+.
T Consensus       224 ---~~~~li~~~l~~~p~~Rps~~~~~~~l~~  252 (252)
T cd05084         224 ---AVYRLMERCWEYDPGQRPSFSTVHQELQS  252 (252)
T ss_pred             ---HHHHHHHHHcCCChhhCcCHHHHHHHHhC
Confidence               45556666999999999999999998763

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.59  E-value=2.7e-16  Score=99.39  Aligned_cols=95  Identities=23%  Similarity=0.366  Sum_probs=73.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +..||+.|||||++  ..-.|+.++||||+|+...|+..|++||....+...        ...-..+.......|+.++.
T Consensus       188 TVIGTPFWMAPEVI--~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRA--------IFMIPT~PPPTF~KPE~WS~  257 (502)
T KOG0574|consen  188 TVIGTPFWMAPEVI--EEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRA--------IFMIPTKPPPTFKKPEEWSS  257 (502)
T ss_pred             ccccCcccccHHHH--HHhccchhhhHhhhcchhhhhhcCCCCcccccccce--------eEeccCCCCCCCCChHhhhh
Confidence            56799999999999  566899999999999999999999999986544220        01112223333345777777


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.++++.       |+-++|++|.++.++++
T Consensus       258 ~F~DFi~~-------CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  258 EFNDFIRS-------CLIKKPEERKTALRLCE  282 (502)
T ss_pred             HHHHHHHH-------HhcCCHHHHHHHHHHhh
Confidence            77777777       99999999999998865

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.59  E-value=5.2e-15  Score=94.33  Aligned_cols=91  Identities=19%  Similarity=0.285  Sum_probs=62.5

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .|+..|++||.+  ....++.++|+||+|++++++++|..|+.......          ....+.....+......+.  
T Consensus       162 ~~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--  227 (277)
T cd06642         162 VGTPFWMAPEVI--KQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMR----------VLFLIPKNSPPTLEGQYSK--  227 (277)
T ss_pred             cCcccccCHHHh--CcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhh----------HHhhhhcCCCCCCCcccCH--
Confidence            477889999998  45578889999999999999999999876432211          1111111112122222222  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                           .+..++..||+.+|++||++.+|+.
T Consensus       228 -----~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         228 -----PFKEFVEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             -----HHHHHHHHHccCCcccCcCHHHHHH
Confidence                 3455666699999999999999986

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.59  E-value=2.3e-15  Score=97.66  Aligned_cols=98  Identities=24%  Similarity=0.412  Sum_probs=66.9

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+||+|++++++++ |..|+.......          .............+...+.   
T Consensus       199 ~~~y~aPE~~--~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  263 (314)
T cd05099         199 PVKWMAPEAL--FDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIPVEE----------LFKLLREGHRMDKPSNCTH---  263 (314)
T ss_pred             CccccCHHHH--ccCCcCccchhhHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHHcCCCCCCCCCCCH---
Confidence            3569999988  45678899999999999999998 777775432111          1222222222222332333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                          .+..++.+||+.+|++||++.++++.|+++....
T Consensus       264 ----~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~~~~  297 (314)
T cd05099         264 ----ELYMLMRECWHAVPTQRPTFKQLVEALDKVLAAV  297 (314)
T ss_pred             ----HHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHHh
Confidence                3445666699999999999999999998876543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.59  E-value=4e-15  Score=94.02  Aligned_cols=94  Identities=15%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccC-CCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR-NNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|++||++.. ...++.++|+||+|++++++++|. .|+......      .    .......  ....+.....
T Consensus       164 ~~~~~~y~aPE~~~~-~~~~~~~~DiwslG~~l~~l~~g~~~~~~~~~~~------~----~~~~~~~--~~~~~~~~~~  230 (258)
T cd05078         164 LLERIPWVPPECIEN-PQNLSLAADKWSFGTTLWEIFSGGDKPLSALDSQ------K----KLQFYED--RHQLPAPKWT  230 (258)
T ss_pred             ccccCCccCchhccC-CCCCCchhhHHHHHHHHHHHHcCCCCChhhccHH------H----HHHHHHc--cccCCCCCcH
Confidence            457889999998832 235788999999999999999985 444322110      0    1111111  1112222222


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                             .+..++..||+.||++||++++|++.|+
T Consensus       231 -------~~~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         231 -------ELANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             -------HHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                   3556666699999999999999998874

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.59  E-value=6e-15  Score=92.87  Aligned_cols=92  Identities=20%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+||+|+++++++++..|+.......          .............+...+. 
T Consensus       161 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  227 (256)
T cd08220         161 VVGTPCYISPELC--EGKPYNQKSDIWALGCVLYELASLKRAFEAANLPA----------LVLKIMSGTFAPISDRYSP-  227 (256)
T ss_pred             cccCCcccCchhc--cCCCCCcccchHHHHHHHHHHHhCCCCcccCchHH----------HHHHHHhcCCCCCCCCcCH-
Confidence            3577889999998  45567889999999999999999998876432211          1111111112222333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.+|++||++.+++.
T Consensus       228 ------~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         228 ------DLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             ------HHHHHHHHHccCChhhCCCHHHHhh
Confidence                  3445556699999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.59  E-value=5.9e-15  Score=97.47  Aligned_cols=93  Identities=24%  Similarity=0.406  Sum_probs=68.8

Q ss_pred             CCCCccccccCccccccccCc-cc-cccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGG-IS-HKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL   79 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~-~~-~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (133)
                      .+.+||+.|+|||++  .... |. .++||||+|++++.|+.|..||.......          +...+..+ ....|..
T Consensus       179 ~t~cGsp~Y~aPEvl--~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~----------l~~ki~~~-~~~~p~~  245 (370)
T KOG0583|consen  179 KTFCGSPAYAAPEVL--SGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPN----------LYRKIRKG-EFKIPSY  245 (370)
T ss_pred             cCCCCCcccCCHHHh--CCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHH----------HHHHHhcC-CccCCCC
Confidence            578999999999999  4434 65 78999999999999999999998743221          22222222 3344555


Q ss_pred             C-ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 V-TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~-~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      . +..+..++.+       |+..||..|+++.+|+.
T Consensus       246 ~~S~~~~~Li~~-------mL~~~P~~R~t~~~i~~  274 (370)
T KOG0583|consen  246 LLSPEARSLIEK-------MLVPDPSTRITLLEILE  274 (370)
T ss_pred             cCCHHHHHHHHH-------HcCCCcccCCCHHHHhh
Confidence            5 6666666666       77999999999999984

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.58  E-value=4.5e-15  Score=93.53  Aligned_cols=92  Identities=20%  Similarity=0.279  Sum_probs=62.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|+|||..  ....++.++|+||+|+++++++++..|+......         ..... +..+..+..+...+. 
T Consensus       162 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~-  228 (257)
T cd08223         162 LIGTPYYMSPELF--SNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMN---------SLVYR-IIEGKLPPMPKDYSP-  228 (257)
T ss_pred             ccCCcCccChhHh--cCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH---------HHHHH-HHhcCCCCCccccCH-
Confidence            4578899999988  4567788999999999999999999887643211         11111 111111122222333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.+|++||++.++++
T Consensus       229 ------~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         229 ------ELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             ------HHHHHHHHHhccCcccCCCHHHHhc
Confidence                  4556666699999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.58  E-value=1.7e-15  Score=98.73  Aligned_cols=91  Identities=19%  Similarity=0.305  Sum_probs=63.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+... ....+...+..
T Consensus       155 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~----------~~~~~~~~-~~~~p~~~~~~  221 (323)
T cd05571         155 FCGTPEYLAPEVL--EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK----------LFELILME-EIRFPRTLSPE  221 (323)
T ss_pred             eecCccccChhhh--cCCCCCccccCcccchhhhhhhcCCCCCCCCCHHH----------HHHHHHcC-CCCCCCCCCHH
Confidence            5699999999998  55678999999999999999999999986532110          11111111 12233444554


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ..+       ++..||+.||++||     ++.++++
T Consensus       222 ~~~-------li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         222 AKS-------LLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             HHH-------HHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            444       44458999999999     7888874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=5.7e-15  Score=93.35  Aligned_cols=93  Identities=20%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|+|||.+  ....++.++|+||+|++++++++|+.||......         ...............+...+..
T Consensus       167 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  235 (263)
T cd06625         167 VTGTPYWMSPEVI--SGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAM---------AAIFKIATQPTNPQLPSHVSPD  235 (263)
T ss_pred             CCcCccccCccee--ccCCCCchhhhHHHHHHHHHHHhCCCCccccchH---------HHHHHHhccCCCCCCCccCCHH
Confidence            4577889999998  4556889999999999999999999998643211         0011111111222233334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       ..++..||..+|++||++.+++.
T Consensus       236 ~-------~~li~~~l~~~p~~Rpt~~~ll~  259 (263)
T cd06625         236 A-------RNFLRRTFVENAKKRPSAEELLR  259 (263)
T ss_pred             H-------HHHHHHHhhcCcccCCCHHHHhh
Confidence            3       44455599999999999999876

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.58  E-value=3.9e-15  Score=96.14  Aligned_cols=96  Identities=22%  Similarity=0.333  Sum_probs=65.8

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++||||+|++++++++ +..|+......      .    ....+........+...+.  
T Consensus       173 ~~~~y~~PE~~--~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  238 (303)
T cd05110         173 MPIKWMALECI--HYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTR------E----IPDLLEKGERLPQPPICTI--  238 (303)
T ss_pred             cccccCCHHHh--ccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHCCCCCCCCCCCCH--
Confidence            45689999988  55678899999999999999987 77887543211      1    1122222222222222222  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                           .+..++..||..+|++||++.+|+..|+++.
T Consensus       239 -----~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~  269 (303)
T cd05110         239 -----DVYMVMVKCWMIDADSRPKFKELAAEFSRMA  269 (303)
T ss_pred             -----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                 3556667799999999999999999888764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.58  E-value=5.5e-15  Score=96.67  Aligned_cols=97  Identities=25%  Similarity=0.402  Sum_probs=66.8

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||++  ....++.++|+||+|++++++++ +..|+.......          ....+........+...+.   
T Consensus       199 ~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  263 (334)
T cd05100         199 PVKWMAPEAL--FDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEE----------LFKLLKEGHRMDKPANCTH---  263 (334)
T ss_pred             CceEcCHHHh--ccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCCHHH----------HHHHHHcCCCCCCCCCCCH---
Confidence            4569999988  55678889999999999999998 777775432111          2222222222222222333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                          .+..++..||+.+|++||++.+|+..|+++...
T Consensus       264 ----~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~~  296 (334)
T cd05100         264 ----ELYMIMRECWHAVPSQRPTFKQLVEDLDRVLTV  296 (334)
T ss_pred             ----HHHHHHHHHcccChhhCcCHHHHHHHHHHHhhh
Confidence                455666669999999999999999999987744

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.58  E-value=5.8e-15  Score=93.21  Aligned_cols=92  Identities=18%  Similarity=0.244  Sum_probs=64.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||++  ....++.++|+|++|++++++++|..|+......      .    .......+.....+...+. 
T Consensus       170 ~~~~~~~~~pE~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~-  236 (265)
T cd08217         170 YVGTPYYMSPEQL--NHMSYDEKSDIWSLGCLIYELCALSPPFTARNQL------Q----LASKIKEGKFRRIPYRYSS-  236 (265)
T ss_pred             cccCCCccChhhh--cCCCCCchhHHHHHHHHHHHHHHCCCcccCcCHH------H----HHHHHhcCCCCCCccccCH-
Confidence            4678899999998  4556788999999999999999999998653211      1    2222222222223333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.+|++||++.+|++
T Consensus       237 ------~~~~l~~~~l~~~p~~Rp~~~~il~  261 (265)
T cd08217         237 ------ELNEVIKSMLNVDPDKRPSTEELLQ  261 (265)
T ss_pred             ------HHHHHHHHHccCCcccCCCHHHHhh
Confidence                  4556666699999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.58  E-value=7.7e-15  Score=92.52  Aligned_cols=95  Identities=22%  Similarity=0.235  Sum_probs=64.9

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+||+|++++++++ |..|+.......          .............+...++  
T Consensus       161 ~~~~~~ape~~--~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~--  226 (256)
T cd05039         161 LPVKWTAPEAL--REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD----------VVPHVEKGYRMEAPEGCPP--  226 (256)
T ss_pred             CcccccCchhh--cCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCHHH----------HHHHHhcCCCCCCccCCCH--
Confidence            35679999987  45678889999999999999987 888875432111          2222222212222232333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                           .+..++.+||+.+|++||++++++..|+++
T Consensus       227 -----~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         227 -----EVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             -----HHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence                 445566669999999999999999998753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.58  E-value=6.1e-15  Score=94.51  Aligned_cols=100  Identities=17%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..||........      .......+... ....+...+..
T Consensus       161 ~~g~~~y~aPE~~--~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~------~~~~~~~~~~~-~~~~~~~~s~~  231 (285)
T cd05631         161 RVGTVGYMAPEVI--NNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVK------REEVDRRVKED-QEEYSEKFSED  231 (285)
T ss_pred             CCCCCCccCHhhh--cCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchh------HHHHHHHhhcc-cccCCccCCHH
Confidence            4689999999998  556789999999999999999999999976433210      00011111111 11122333443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH--HHccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE--MLEGG  119 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~--~l~~~  119 (133)
                             +..++..||+.||.+|++     ++++++  .++++
T Consensus       232 -------~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~  267 (285)
T cd05631         232 -------AKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNI  267 (285)
T ss_pred             -------HHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCC
Confidence                   344455599999999997     788876  34443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.58  E-value=6.3e-15  Score=92.61  Aligned_cols=93  Identities=23%  Similarity=0.386  Sum_probs=63.0

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+||+|++++++++ +..|+.......          ....+........+...+.   
T Consensus       158 ~~~y~~PE~~--~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  222 (251)
T cd05041         158 PIKWTAPEAL--NYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQ----------TRERIESGYRMPAPQLCPE---  222 (251)
T ss_pred             eeccCChHhh--ccCCCCcchhHHHHHHHHHHHHhccCCCCccCCHHH----------HHHHHhcCCCCCCCccCCH---
Confidence            4569999987  45678899999999999999998 677775432211          1111111111122222333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                          .+.+++.+||+.+|++||++.+|++.|++
T Consensus       223 ----~~~~li~~~l~~~p~~Rp~~~ell~~l~~  251 (251)
T cd05041         223 ----EIYRLMLQCWAYDPENRPSFSEIYNELQI  251 (251)
T ss_pred             ----HHHHHHHHHhccChhhCcCHHHHHHHhhC
Confidence                45556666999999999999999998863

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.58  E-value=6.6e-15  Score=93.29  Aligned_cols=92  Identities=16%  Similarity=0.276  Sum_probs=62.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..||.......         .... ......+..+...+..
T Consensus       172 ~~~~~~y~~pe~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~  239 (267)
T cd06628         172 LQGSVFWMAPEVV--KQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQLQ---------AIFK-IGENASPEIPSNISSE  239 (267)
T ss_pred             cCCCcCccChhHh--ccCCCCchhhhHHHHHHHHHHhhCCCCCCCccHHH---------HHHH-HhccCCCcCCcccCHH
Confidence            3578889999988  45677889999999999999999999986532110         0111 1112222233334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             +..++..||+.||.+||++.+|++
T Consensus       240 -------~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         240 -------AIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             -------HHHHHHHHccCCchhCcCHHHHhh
Confidence                   444555599999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.58  E-value=5.6e-15  Score=93.85  Aligned_cols=95  Identities=18%  Similarity=0.227  Sum_probs=61.5

Q ss_pred             CCccccccCccccccc---cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            4 ARGTVSYIAPEVFCRN---FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~---~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ..|+..|++||++...   ...++.++|+||+|++++++++|..|+.......        . .................
T Consensus       171 ~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~--------~-~~~~~~~~~~~~~~~~~  241 (272)
T cd06637         171 FIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMR--------A-LFLIPRNPAPRLKSKKW  241 (272)
T ss_pred             ccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHH--------H-HHHHhcCCCCCCCCCCc
Confidence            4688899999987321   3357889999999999999999999885432110        0 00000111111111222


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.       .+..++.+||+.+|.+||++.+|+.
T Consensus       242 ~~-------~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         242 SK-------KFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             CH-------HHHHHHHHHcCCChhhCCCHHHHhh
Confidence            23       3556666799999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.58  E-value=5.1e-15  Score=94.42  Aligned_cols=92  Identities=20%  Similarity=0.282  Sum_probs=63.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..|+.......          ..........+..+.     
T Consensus       161 ~~~~~~y~apE~~--~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~----------~~~~~~~~~~~~~~~-----  223 (277)
T cd06640         161 FVGTPFWMAPEVI--QQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMR----------VLFLIPKNNPPTLTG-----  223 (277)
T ss_pred             ccCcccccCHhHh--ccCCCccHHHHHHHHHHHHHHHHCCCCCCCcChHh----------HhhhhhcCCCCCCch-----
Confidence            3577889999987  45567889999999999999999999886533211          111111111111111     


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                        .....+..++..||+.+|++||++.+++.
T Consensus       224 --~~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06640         224 --EFSKPFKEFIDACLNKDPSFRPTAKELLK  252 (277)
T ss_pred             --hhhHHHHHHHHHHcccCcccCcCHHHHHh
Confidence              22334556777799999999999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.58  E-value=7.7e-15  Score=93.01  Aligned_cols=94  Identities=15%  Similarity=0.203  Sum_probs=60.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHH-ccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV-GVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|+|||.+. ....++.++||||+|+++|+++ .+..|+.......          ..........  .....  
T Consensus       168 ~~~~~~y~aPE~~~-~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~~----------~~~~~~~~~~--~~~~~--  232 (262)
T cd05077         168 CVERIPWIAPECVE-DSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTLAE----------KERFYEGQCM--LVTPS--  232 (262)
T ss_pred             ccccccccChhhhc-CCCCCCchhHHHHHHHHHHHHHhCCCCCCCCcchhH----------HHHHHhcCcc--CCCCC--
Confidence            35788899999873 2356788999999999999997 4666664322110          1111111100  01101  


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                           ...+..++..||+.||.+||++.+|+..++
T Consensus       233 -----~~~~~~li~~cl~~dp~~Rp~~~~il~~~~  262 (262)
T cd05077         233 -----CKELADLMTHCMNYDPNQRPFFRAIMRDIN  262 (262)
T ss_pred             -----hHHHHHHHHHHcCCChhhCcCHHHHHHhcC
Confidence                 123556677799999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.58  E-value=3.4e-15  Score=96.48  Aligned_cols=97  Identities=22%  Similarity=0.338  Sum_probs=65.4

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++||||+|++++++++ |..|+.......          .............+...+.   
T Consensus       186 ~~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  250 (303)
T cd05088         186 PVRWMAIESL--NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE----------LYEKLPQGYRLEKPLNCDD---  250 (303)
T ss_pred             cccccCHHHH--hccCCcccccchhhhhHHHHHHhcCCCCcccCChHH----------HHHHHhcCCcCCCCCCCCH---
Confidence            4569999987  45567889999999999999998 888875432211          1111111111111222223   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                          .+..++..||+.+|++||++.+++..|+.+...
T Consensus       251 ----~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~  283 (303)
T cd05088         251 ----EVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  283 (303)
T ss_pred             ----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence                345666679999999999999999988766543

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.58  E-value=2.6e-15  Score=96.16  Aligned_cols=99  Identities=18%  Similarity=0.251  Sum_probs=62.6

Q ss_pred             CCccccccCcccccccc-CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNF-GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~-~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|++||.+.... ..++.++|+||+|++++++++|+.||.....        ......... ....+..+.... 
T Consensus       167 ~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~-  236 (288)
T cd06616         167 DAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS--------VFDQLTQVV-KGDPPILSNSEE-  236 (288)
T ss_pred             ccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch--------HHHHHhhhc-CCCCCcCCCcCC-
Confidence            35788999999883211 2578899999999999999999999864321        000111111 111111111110 


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                        ......+..++..||+.+|++||++.+|+.
T Consensus       237 --~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~  266 (288)
T cd06616         237 --REFSPSFVNFINLCLIKDESKRPKYKELLE  266 (288)
T ss_pred             --CccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence              112234566667799999999999999986

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.58  E-value=2.4e-14  Score=95.54  Aligned_cols=43  Identities=19%  Similarity=0.332  Sum_probs=37.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      .+||+.|+|||++  ....++.++||||+|++++++++|..|+..
T Consensus       243 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvil~elltg~~p~~~  285 (391)
T PHA03212        243 WAGTIATNAPELL--ARDPYGPAVDIWSAGIVLFEMATCHDSLFE  285 (391)
T ss_pred             ccCccCCCChhhh--cCCCCCcHHHHHHHHHHHHHHHHCCCCcCC
Confidence            5799999999998  556789999999999999999999877643

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.58  E-value=5.7e-15  Score=94.24  Aligned_cols=97  Identities=23%  Similarity=0.306  Sum_probs=68.2

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+||+|++++++++ |..|+.......          ....+..+.....+...+.   
T Consensus       174 ~~~y~~PE~~--~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  238 (279)
T cd05057         174 PIKWMALESI--LHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIPAVE----------IPDLLEKGERLPQPPICTI---  238 (279)
T ss_pred             cccccCHHHh--hcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCCHHH----------HHHHHhCCCCCCCCCCCCH---
Confidence            4579999987  45678889999999999999998 888886542211          2222222222223333333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                          .+..++.+||..+|++||++.+++..|+++.+.
T Consensus       239 ----~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         239 ----DVYMVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             ----HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence                345566679999999999999999999887543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.57  E-value=1.4e-14  Score=92.68  Aligned_cols=124  Identities=13%  Similarity=0.001  Sum_probs=76.4

Q ss_pred             CCCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCC-------Cc--chhhhHHH----Hhh
Q 040499            1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTS-------ST--EMYFPDWF----YKL   67 (133)
Q Consensus         1 ~~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~-------~~--~~~~~~~~----~~~   67 (133)
                      ||..+-|.+|.|||.+. ....|+...||||.||++.|+++|++-|.+......       .+  ..+....+    ...
T Consensus       184 mTeYVaTRWYRAPElll-~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~  262 (359)
T KOG0660|consen  184 MTEYVATRWYRAPELLL-NSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEEDLQKIRSEKARP  262 (359)
T ss_pred             hhcceeeeeecCHHHHh-ccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHHHHHhccHHHHH
Confidence            57788899999999873 567999999999999999999999998876533210       00  00000000    000


Q ss_pred             hcCCccccccC-CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCCCCC
Q 040499           68 LEPGEDLKRHG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEALQVP  126 (133)
Q Consensus        68 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~~~~  126 (133)
                      +... .+..+. .....+...-...++|...+|..||.+|+|+++.++  +|+......++|
T Consensus       263 yi~s-lp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~dEP  323 (359)
T KOG0660|consen  263 YIKS-LPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPEDEP  323 (359)
T ss_pred             HHHh-CCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCccCC
Confidence            0000 000111 011111112223445555577999999999999986  888888777776

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.57  E-value=5.3e-15  Score=93.89  Aligned_cols=93  Identities=17%  Similarity=0.252  Sum_probs=63.6

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      ..|++||.+  ....++.++||||+|++++|+++ |..|+......      .    ....+........+...+.    
T Consensus       175 ~~y~~PE~~--~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~~------~----~~~~i~~~~~~~~~~~~~~----  238 (269)
T cd05065         175 IRWTAPEAI--AYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQ------D----VINAIEQDYRLPPPMDCPT----  238 (269)
T ss_pred             eeecCHhHh--ccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCHH------H----HHHHHHcCCcCCCcccCCH----
Confidence            469999988  55678889999999999999886 88887643221      1    1111111111111222232    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                         .+..++..||+.+|++||++.+|+..|+++
T Consensus       239 ---~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         239 ---ALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             ---HHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence               345666679999999999999999998865

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.57  E-value=7.2e-15  Score=96.48  Aligned_cols=99  Identities=25%  Similarity=0.335  Sum_probs=68.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+|++|++++++++ |..|+.......     .    ....+..+.....+...+.  
T Consensus       243 ~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~--  309 (343)
T cd05103         243 LPLKWMAPETI--FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-----E----FCRRLKEGTRMRAPDYTTP--  309 (343)
T ss_pred             CCcceECcHHh--cCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccccH-----H----HHHHHhccCCCCCCCCCCH--
Confidence            45679999987  45678899999999999999986 777875432110     0    1122222222222332222  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                           .+.+++..||+.||++||++.+|++.|+.+.+.
T Consensus       310 -----~~~~~~~~cl~~~p~~Rps~~eil~~l~~~~~~  342 (343)
T cd05103         310 -----EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  342 (343)
T ss_pred             -----HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence                 456677779999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.57  E-value=8.6e-15  Score=92.90  Aligned_cols=94  Identities=19%  Similarity=0.308  Sum_probs=64.7

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+|++|++++++++ |..|+.......          ....+........+...+.   
T Consensus       172 ~~~y~~pe~~--~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  236 (267)
T cd05066         172 PIRWTAPEAI--AYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSNQD----------VIKAIEEGYRLPAPMDCPA---  236 (267)
T ss_pred             ceeecCHhHh--ccCccCchhhhHHHHHHHHHHhcCCCCCcccCCHHH----------HHHHHhCCCcCCCCCCCCH---
Confidence            4579999988  55678899999999999999886 888876542211          1112222212122222233   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                          .+..++..||+.+|.+||++.++++.|+++
T Consensus       237 ----~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         237 ----ALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             ----HHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence                345566669999999999999999998875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.57  E-value=1.4e-14  Score=95.48  Aligned_cols=98  Identities=16%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             CCCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC
Q 040499            3 DARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (133)
                      ..+||..|+|||++..   .....+.++||||||++++++++|+.||.......      ... .............+..
T Consensus       227 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~------~~~-~~~~~~~~~~~~~~~~  299 (353)
T PLN00034        227 SSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGD------WAS-LMCAICMSQPPEAPAT  299 (353)
T ss_pred             ccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCcc------HHH-HHHHHhccCCCCCCCc
Confidence            3568999999998721   11223458999999999999999999987322111      011 1111111112222233


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.       .+..++..||+.||++||++.+|++
T Consensus       300 ~~~-------~l~~li~~~l~~~P~~Rpt~~ell~  327 (353)
T PLN00034        300 ASR-------EFRHFISCCLQREPAKRWSAMQLLQ  327 (353)
T ss_pred             cCH-------HHHHHHHHHccCChhhCcCHHHHhc
Confidence            333       3455556699999999999999987

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.57  E-value=3.1e-15  Score=93.35  Aligned_cols=95  Identities=20%  Similarity=0.284  Sum_probs=67.8

Q ss_pred             CCccccccCccccccc-cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC--C
Q 040499            4 ARGTVSYIAPEVFCRN-FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL--V   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~-~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   80 (133)
                      -.|...|||||.+... ...|+..+||||+|+.++|+.+|.-||.+....-       .  ....+.+..++..+..  +
T Consensus       251 sAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~tdF-------e--~ltkvln~ePP~L~~~~gF  321 (391)
T KOG0983|consen  251 SAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTDF-------E--VLTKVLNEEPPLLPGHMGF  321 (391)
T ss_pred             ccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCccH-------H--HHHHHHhcCCCCCCcccCc
Confidence            4578899999998543 4589999999999999999999999998755431       1  2222322333444332  4


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ++.+.+++..       ||++|+.+||...++++
T Consensus       322 Sp~F~~fv~~-------CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  322 SPDFQSFVKD-------CLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             CHHHHHHHHH-------HhhcCcccCcchHHHhc
Confidence            5544444444       99999999999998875

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.57  E-value=7.7e-15  Score=99.25  Aligned_cols=93  Identities=17%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +++.||+.|||||.+  .+..|+..+|.||+||++||+..|++||.....         ......+..+..  .-|...+
T Consensus       158 tsikGtPlYmAPElv--~e~pyd~~sDlWslGcilYE~~~G~PPF~a~si---------~~Lv~~I~~d~v--~~p~~~S  224 (808)
T KOG0597|consen  158 TSIKGTPLYMAPELV--EEQPYDHTSDLWSLGCILYELYVGQPPFYARSI---------TQLVKSILKDPV--KPPSTAS  224 (808)
T ss_pred             eeccCcccccCHHHH--cCCCccchhhHHHHHHHHHHHhcCCCCchHHHH---------HHHHHHHhcCCC--CCccccc
Confidence            456799999999999  678999999999999999999999999974321         111222333322  2244667


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+.+++..++       .+||..|.+..+++.
T Consensus       225 ~~f~nfl~gLL-------~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  225 SSFVNFLQGLL-------IKDPAQRLTWTDLLG  250 (808)
T ss_pred             HHHHHHHHHHh-------hcChhhcccHHHHhc
Confidence            77888888866       999999999999875

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.57  E-value=6.6e-15  Score=92.78  Aligned_cols=91  Identities=21%  Similarity=0.329  Sum_probs=62.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .|+..|++||+.  ....++.++|+||+|++++++++|..|+......         ...... ..+..+..+...+.  
T Consensus       162 ~~~~~~~~pe~~--~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~--  227 (256)
T cd08218         162 IGTPYYLSPEIC--ENRPYNNKSDIWALGCVLYEMCTLKHAFEAGNMK---------NLVLKI-IRGSYPPVSSHYSY--  227 (256)
T ss_pred             cCCccccCHHHh--CCCCCCCccchhHHHHHHHHHHcCCCCccCCCHH---------HHHHHH-hcCCCCCCcccCCH--
Confidence            477889999987  4567788999999999999999999987643211         111111 11222222333333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                           .+..++..||+.+|++||++.+|+.
T Consensus       228 -----~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         228 -----DLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             -----HHHHHHHHHhhCChhhCcCHHHHhh
Confidence                 3455556699999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.56  E-value=8.2e-15  Score=93.63  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ..|+..|+|||.+..   ....++.++|+||+|++++++++|..|+.......   .      .................
T Consensus       181 ~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~~~---~------~~~~~~~~~~~~~~~~~  251 (282)
T cd06636         181 FIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMR---A------LFLIPRNPPPKLKSKKW  251 (282)
T ss_pred             ccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCHHh---h------hhhHhhCCCCCCccccc
Confidence            457889999998731   13457789999999999999999999986432211   0      10000111111111222


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.       .+..++..||+.||.+||++.+|++
T Consensus       252 ~~-------~~~~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         252 SK-------KFIDFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             CH-------HHHHHHHHHhCCChhhCcCHHHHhc
Confidence            33       4556666799999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.56  E-value=4e-15  Score=96.78  Aligned_cols=91  Identities=15%  Similarity=0.279  Sum_probs=63.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+... ....+...+..
T Consensus       156 ~~g~~~y~aPE~~--~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~~~----------~~~~i~~~-~~~~~~~~~~~  222 (318)
T cd05570         156 FCGTPDYIAPEIL--SYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDEDE----------LFQSILED-EVRYPRWLSKE  222 (318)
T ss_pred             eecCccccCHHHh--cCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCHHH----------HHHHHHcC-CCCCCCcCCHH
Confidence            4689999999998  56678899999999999999999999986432211          11111111 11223334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCH-----HHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSM-----SKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~-----~~v~~  114 (133)
                             +..++..||+.||++||++     .+++.
T Consensus       223 -------~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         223 -------AKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             -------HHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence                   4445555999999999999     87764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.56  E-value=2.9e-14  Score=93.34  Aligned_cols=43  Identities=28%  Similarity=0.415  Sum_probs=37.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..||..|+|||.+  ....++.++|+||+|++++++++|+.||..
T Consensus       162 ~~~~~~y~aPE~~--~~~~~~~~~DvwslG~il~~l~~g~~p~~~  204 (333)
T cd06650         162 FVGTRSYMSPERL--QGTHYSVQSDIWSMGLSLVEMAIGRYPIPP  204 (333)
T ss_pred             CCCCccccCHHHh--cCCCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            4688999999998  456788899999999999999999999864

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.56  E-value=3.6e-15  Score=95.99  Aligned_cols=97  Identities=18%  Similarity=0.257  Sum_probs=62.1

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc--cCCCCCCCCCCCCCcchhhhHHHHhhhcC---CccccccCCCC
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG--VRNNTASGVTHTSSTEMYFPDWFYKLLEP---GEDLKRHGLVT   81 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   81 (133)
                      +..|++||+.  ..+.++.++|+||+|++++++++  +..|+.......      ...........   ......+...+
T Consensus       195 ~~~~~~pe~~--~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  266 (296)
T cd05095         195 PIRWMSWESI--LLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQ------VIENTGEFFRDQGRQVYLPKPALCP  266 (296)
T ss_pred             ccccCCHHHH--hcCCccchhhhhHHHHHHHHHHHhCCCCCccccChHH------HHHHHHHHHhhccccccCCCCCCCC
Confidence            5679999987  45678899999999999999997  556665432211      00001110000   00111112222


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                             ..+.+++.+||+.||++||++.+|.+.|++
T Consensus       267 -------~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         267 -------DSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             -------HHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence                   356677777999999999999999998864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.56  E-value=2e-14  Score=92.59  Aligned_cols=93  Identities=17%  Similarity=0.281  Sum_probs=63.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+|+||++++++++|+.||.......         .......... ....+...+.
T Consensus       176 ~~~~~~y~aPE~~--~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  244 (296)
T cd06654         176 MVGTPYWMAPEVV--TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR---------ALYLIATNGTPELQNPEKLSA  244 (296)
T ss_pred             ccCCccccCHHHH--cCCCCCccchHHHHHHHHHHHHhCCCCCCCCCHHH---------hHHHHhcCCCCCCCCccccCH
Confidence            4678899999988  45567889999999999999999999986543211         0111111111 1111222222


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++.+||..||++||++.+|+.
T Consensus       245 -------~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         245 -------IFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             -------HHHHHHHHHCcCCcccCcCHHHHhh
Confidence                   3455666799999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.56  E-value=1e-14  Score=91.79  Aligned_cols=92  Identities=20%  Similarity=0.317  Sum_probs=61.4

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhc-CCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLE-PGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   83 (133)
                      .|+..|++||++  ....++.++|+|++|++++++++|..|+.......        . ...... .......+...+  
T Consensus       160 ~~~~~y~~PE~~--~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~--  226 (256)
T cd06612         160 IGTPFWMAPEVI--QEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPMR--------A-IFMIPNKPPPTLSDPEKWS--  226 (256)
T ss_pred             cCCccccCHHHH--hcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchhh--------h-hhhhccCCCCCCCchhhcC--
Confidence            477889999988  45678889999999999999999999986543211        0 000000 000111111122  


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                           ..+..++..||+.||++||++++|+.
T Consensus       227 -----~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         227 -----PEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             -----HHHHHHHHHHHhcChhhCcCHHHHhc
Confidence                 23555666699999999999999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.56  E-value=7.1e-15  Score=96.00  Aligned_cols=92  Identities=20%  Similarity=0.303  Sum_probs=63.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+.. .....+...+.
T Consensus       154 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~~~----------~~~~~~~-~~~~~p~~~~~  220 (328)
T cd05593         154 TFCGTPEYLAPEVL--EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK----------LFELILM-EDIKFPRTLSA  220 (328)
T ss_pred             cccCCcCccChhhh--cCCCCCccCCccccchHHHHHhhCCCCCCCCCHHH----------HHHHhcc-CCccCCCCCCH
Confidence            35689999999998  55678899999999999999999999986532211          1111111 12223444455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...++       +..||+.||++|+     ++.++++
T Consensus       221 ~~~~l-------i~~~L~~dP~~R~~~~~~~~~~il~  250 (328)
T cd05593         221 DAKSL-------LSGLLIKDPNKRLGGGPDDAKEIMR  250 (328)
T ss_pred             HHHHH-------HHHHcCCCHHHcCCCCCCCHHHHhc
Confidence            44444       4458899999997     7888875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.56  E-value=3.7e-15  Score=96.66  Aligned_cols=91  Identities=16%  Similarity=0.227  Sum_probs=62.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++||||+|++++++++|..||......         .........  ....+...+..
T Consensus       153 ~~gt~~y~aPE~~--~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~---------~~~~~~~~~--~~~~~~~~~~~  219 (312)
T cd05585         153 FCGTPEYLAPELL--LGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVN---------EMYRKILQE--PLRFPDGFDRD  219 (312)
T ss_pred             ccCCcccCCHHHH--cCCCCCCccceechhHHHHHHHhCCCCcCCCCHH---------HHHHHHHcC--CCCCCCcCCHH
Confidence            5689999999998  5567889999999999999999999998653211         111111111  22233334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC---HHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS---MSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps---~~~v~~  114 (133)
                      .       ..++..||+.||.+|++   +.+++.
T Consensus       220 ~-------~~li~~~L~~dp~~R~~~~~~~e~l~  246 (312)
T cd05585         220 A-------KDLLIGLLSRDPTRRLGYNGAQEIKN  246 (312)
T ss_pred             H-------HHHHHHHcCCCHHHcCCCCCHHHHHc
Confidence            3       44455599999999985   566654

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.56  E-value=1.2e-14  Score=93.19  Aligned_cols=96  Identities=23%  Similarity=0.356  Sum_probs=65.2

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+||+|++++++++ +..|+......      .    .......+.....+...+.  
T Consensus       183 ~~~~y~~pE~~--~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  248 (288)
T cd05061         183 LPVRWMAPESL--KDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNE------Q----VLKFVMDGGYLDQPDNCPE--  248 (288)
T ss_pred             ccccccCHHHh--ccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH--
Confidence            45679999987  45678889999999999999998 67777542211      1    1111111212222222233  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                           .+..++..||+.||++||++.++++.|++..
T Consensus       249 -----~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~  279 (288)
T cd05061         249 -----RVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL  279 (288)
T ss_pred             -----HHHHHHHHHcCCChhHCcCHHHHHHHHHhhc
Confidence                 4556666699999999999999999988764

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.56  E-value=3e-15  Score=97.84  Aligned_cols=97  Identities=13%  Similarity=0.078  Sum_probs=63.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc---CC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH---GL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~   79 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||.......      ....+.........+...   ..
T Consensus       157 ~~~gt~~y~aPE~~--~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~  228 (333)
T cd05600         157 SVVGSPDYMAPEVL--RGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNE------TWENLKYWKETLQRPVYDDPRFN  228 (333)
T ss_pred             CcccCccccChhHh--cCCCCCCccceecchHHHhhhhhCCCCCCCCCHHH------HHHHHHhccccccCCCCCccccc
Confidence            45799999999998  45688899999999999999999999986542211      000011000000000000   01


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.       .+..++..||+.+|.+||++.+++.
T Consensus       229 ~s~-------~~~~li~~~l~~~~~rr~s~~~ll~  256 (333)
T cd05600         229 LSD-------EAWDLITKLINDPSRRFGSLEDIKN  256 (333)
T ss_pred             cCH-------HHHHHHHHHhhChhhhcCCHHHHHh
Confidence            233       3445555688999999999999986

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.56  E-value=1.5e-14  Score=91.37  Aligned_cols=94  Identities=26%  Similarity=0.398  Sum_probs=64.1

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+||+|++++++++ |..||......      .    ....+........+...+.  
T Consensus       166 ~~~~y~~PE~~--~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  231 (261)
T cd05034         166 FPIKWTAPEAA--NYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMTNR------E----VLEQVERGYRMPRPPNCPE--  231 (261)
T ss_pred             CCccccCHHHh--ccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH--
Confidence            34579999987  45678889999999999999998 88887543211      1    1111221212222222333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                           .+.+++.+||+.+|++||+++++...|+.
T Consensus       232 -----~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         232 -----ELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             -----HHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence                 45566666999999999999999998875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.55  E-value=1.1e-14  Score=92.48  Aligned_cols=95  Identities=23%  Similarity=0.251  Sum_probs=64.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++||||+|++++++++ +..|+......      .    .............+...+   
T Consensus       177 ~~~~~~~pe~~--~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~---  241 (273)
T cd05074         177 LPVKWLALESL--ADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVENS------E----IYNYLIKGNRLKQPPDCL---  241 (273)
T ss_pred             CchhhcCHhHH--hcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCHH------H----HHHHHHcCCcCCCCCCCC---
Confidence            34678999987  45677889999999999999998 77777543221      1    111111111111112122   


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                          ..+.+++.+||+.+|++||++.+|+..|+++
T Consensus       242 ----~~~~~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         242 ----EDVYELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             ----HHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence                3566677779999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.55  E-value=1e-14  Score=95.29  Aligned_cols=95  Identities=16%  Similarity=0.271  Sum_probs=61.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|..||........ .......+........ ....|...+..
T Consensus       156 ~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~-~~~~~~~~~~~~i~~~-~~~~p~~~~~~  231 (329)
T cd05618         156 FCGTPNYIAPEIL--RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN-PDQNTEDYLFQVILEK-QIRIPRSLSVK  231 (329)
T ss_pred             ccCCccccCHHHH--cCCCCCCccceecccHHHHHHhhCCCCCccCCCcCC-cccccHHHHHHHHhcC-CCCCCCCCCHH
Confidence            5689999999998  556788899999999999999999999864322211 1111112222222111 22234444444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                      ..       .++..||+.||++|+++
T Consensus       232 ~~-------~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         232 AA-------SVLKSFLNKDPKERLGC  250 (329)
T ss_pred             HH-------HHHHHHhcCCHHHcCCC
Confidence            33       44455999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.55  E-value=8.4e-15  Score=95.45  Aligned_cols=92  Identities=20%  Similarity=0.305  Sum_probs=63.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++  ....++.++|+||+|++++++++|..||.......      .   .......  ....+...+.
T Consensus       154 ~~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~~~------~---~~~~~~~--~~~~p~~~~~  220 (323)
T cd05595         154 TFCGTPEYLAPEVL--EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHER------L---FELILME--EIRFPRTLSP  220 (323)
T ss_pred             cccCCcCcCCcccc--cCCCCCchhchhhhHHHHHHHHhCCCCCCCCCHHH------H---HHHHhcC--CCCCCCCCCH
Confidence            35689999999998  55678899999999999999999999986542211      0   1111111  1123444455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...++       +..||+.||.+|+     ++.+++.
T Consensus       221 ~~~~l-------i~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         221 EAKSL-------LAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             HHHHH-------HHHHccCCHHHhCCCCCCCHHHHHc
Confidence            44444       4449999999998     7888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.55  E-value=5.9e-15  Score=95.93  Aligned_cols=91  Identities=16%  Similarity=0.222  Sum_probs=62.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+... .+..+...+.
T Consensus       155 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~~~----------~~~~~~~~-~~~~~~~~~~  221 (316)
T cd05620         155 TFCGTPDYIAPEIL--QGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDEDE----------LFESIRVD-TPHYPRWITK  221 (316)
T ss_pred             ccCCCcCccCHHHH--cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH----------HHHHHHhC-CCCCCCCCCH
Confidence            35689999999998  55678899999999999999999999986532211          11111111 1222333444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHH-HHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMS-KAV  113 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~-~v~  113 (133)
                      ...       .++..||+.||++|+++. +++
T Consensus       222 ~~~-------~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         222 ESK-------DILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             HHH-------HHHHHHccCCHHHcCCChHHHH
Confidence            444       444559999999999974 565

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.55  E-value=8.6e-15  Score=95.42  Aligned_cols=92  Identities=16%  Similarity=0.296  Sum_probs=62.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||.+  ....++.++|+||+|++++++++|..||.......          ....+... ....+...+.
T Consensus       160 ~~~g~~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~~~----------~~~~i~~~-~~~~p~~~~~  226 (324)
T cd05589         160 TFCGTPEFLAPEVL--TETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEE----------VFDSIVND-EVRYPRFLSR  226 (324)
T ss_pred             ccccCccccCHhHh--cCCCCCcccchhhHHHHHHHHHhCCCCCCCCCHHH----------HHHHHHhC-CCCCCCCCCH
Confidence            35689999999998  55678899999999999999999999986542211          11111111 1122333444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ..       ..++..||+.||++||     ++.+++.
T Consensus       227 ~~-------~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         227 EA-------ISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             HH-------HHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence            43       3445558999999999     5666654

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.55  E-value=1.4e-14  Score=91.27  Aligned_cols=93  Identities=17%  Similarity=0.291  Sum_probs=63.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..|+......         . ....+..+.....+...+. 
T Consensus       161 ~~~~~~y~ape~~--~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~-  227 (256)
T cd08221         161 VVGTPYYMSPELC--QGVKYNFKSDIWALGCVLYELLTLKRTFDATNPL---------N-LVVKIVQGNYTPVVSVYSS-  227 (256)
T ss_pred             cCCCccccCHhhc--CCCCCCCcchhHHHHHHHHHHHHCCCCCCCCCHH---------H-HHHHHHcCCCCCCccccCH-
Confidence            4688999999987  4456788999999999999999999888643211         0 1111111212112222333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                            .+..++..||+.+|++||+++++++.
T Consensus       228 ------~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         228 ------ELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             ------HHHHHHHHHcccCcccCCCHHHHhhC
Confidence                  34455556999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.55  E-value=1.4e-15  Score=101.98  Aligned_cols=98  Identities=22%  Similarity=0.323  Sum_probs=71.5

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhh-cCCccccccCCCChhHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLL-EPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   85 (133)
                      +.|+|||.+  ....|+.++|||||||++||+.+ |..||.+.....          ....+ ..+.....+...+.   
T Consensus       326 irWLAPEtl--~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~~~~----------v~~kI~~~~~r~~~~~~~p~---  390 (474)
T KOG0194|consen  326 IRWLAPETL--NTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMKNYE----------VKAKIVKNGYRMPIPSKTPK---  390 (474)
T ss_pred             ceecChhhh--ccCccccccchhheeeeEEeeeccCCCCCCCCCHHH----------HHHHHHhcCccCCCCCCCHH---
Confidence            679999999  66799999999999999999988 677887653321          22222 44444444443333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                          .+..++.+||..+|++||+|.++.+.++.+.....
T Consensus       391 ----~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  391 ----ELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             ----HHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence                34444556999999999999999998887766543

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.55  E-value=5e-15  Score=96.73  Aligned_cols=91  Identities=20%  Similarity=0.256  Sum_probs=62.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..||.......          ....+..+ ....+...+..
T Consensus       175 ~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~----------~~~~i~~~-~~~~p~~~~~~  241 (329)
T PTZ00263        175 LCGTPEYLAPEVI--QSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFR----------IYEKILAG-RLKFPNWFDGR  241 (329)
T ss_pred             ecCChhhcCHHHH--cCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHH----------HHHHHhcC-CcCCCCCCCHH
Confidence            4689999999998  45677899999999999999999999986432211          11222222 12234444444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                      ..       .++..||+.||.+|++     +.+++.
T Consensus       242 ~~-------~li~~~L~~dP~~R~~~~~~~~~~ll~  270 (329)
T PTZ00263        242 AR-------DLVKGLLQTDHTKRLGTLKGGVADVKN  270 (329)
T ss_pred             HH-------HHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            44       4445589999999986     677764

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.55  E-value=3e-14  Score=91.85  Aligned_cols=93  Identities=18%  Similarity=0.287  Sum_probs=62.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC-ccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG-EDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..||.......     .    ........ .....+...+.
T Consensus       175 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~  243 (296)
T cd06655         175 MVGTPYWMAPEVV--TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR-----A----LYLIATNGTPELQNPEKLSP  243 (296)
T ss_pred             cCCCccccCcchh--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-----H----HHHHHhcCCcccCCcccCCH
Confidence            3578899999988  45677889999999999999999999986532210     0    11111111 11112222333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++.+||..||.+||++.+|+.
T Consensus       244 -------~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         244 -------IFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             -------HHHHHHHHHhhcChhhCCCHHHHhh
Confidence                   3444556699999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.55  E-value=8.8e-15  Score=92.80  Aligned_cols=92  Identities=22%  Similarity=0.331  Sum_probs=59.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|+|||.+  ....++.++|+||+|++++++++|+.||......         ............+..+......
T Consensus       169 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  237 (266)
T cd06651         169 VTGTPYWMSPEVI--SGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAM---------AAIFKIATQPTNPQLPSHISEH  237 (266)
T ss_pred             CCccccccCHHHh--CCCCCCchhhhHHHHHHHHHHHHCCCCccccchH---------HHHHHHhcCCCCCCCchhcCHH
Confidence            3477889999988  4567888999999999999999999998643211         0011111111122222222332


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...++        .||..+|++||++++|+.
T Consensus       238 ~~~li--------~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         238 ARDFL--------GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             HHHHH--------HHhcCChhhCcCHHHHhc
Confidence            22222        488899999999999975

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.55  E-value=1.7e-14  Score=95.93  Aligned_cols=96  Identities=19%  Similarity=0.242  Sum_probs=66.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC--CC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG--LV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   80 (133)
                      +.+||..|+|||++  ....++.++||||+|++++++++|..||.......         ..............+.  ..
T Consensus       207 ~~~gt~~Y~aPE~~--~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~---------~~~~i~~~~~~~~~~~~~~~  275 (381)
T cd05626         207 SLVGTPNYIAPEVL--LRKGYTQLCDWWSVGVILFEMLVGQPPFLAPTPTE---------TQLKVINWENTLHIPPQVKL  275 (381)
T ss_pred             cccCCccccCHHHH--cCCCCCCccceeehhhHHHHHHhCCCCCcCCCHHH---------HHHHHHccccccCCCCCCCC
Confidence            35799999999998  45678899999999999999999999997543211         0111111111111222  34


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +....+++.+++     |+..++..|+++.+|+.
T Consensus       276 s~~~~dli~~ll-----~~~~~~~~R~~~~~~l~  304 (381)
T cd05626         276 SPEAVDLITKLC-----CSAEERLGRNGADDIKA  304 (381)
T ss_pred             CHHHHHHHHHHc-----cCcccccCCCCHHHHhc
Confidence            566667777655     77888888999999986

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.55  E-value=1.2e-14  Score=94.99  Aligned_cols=101  Identities=14%  Similarity=0.250  Sum_probs=65.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||++  ....++.++|+||+|++++++++|+.||........ .......+....+... ....|...+.
T Consensus       155 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~p~~~~~  230 (329)
T cd05588         155 TFCGTPNYIAPEIL--RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDN-PDQNTEDYLFQVILEK-QIRIPRSLSV  230 (329)
T ss_pred             cccCCccccCHHHH--cCCCCCCccceechHHHHHHHHHCCCCccccccccc-ccccchHHHHHHHHcC-CCCCCCCCCH
Confidence            35689999999998  556788999999999999999999999964332210 1111112222222222 2223444455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCC------HHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSS------MSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps------~~~v~~  114 (133)
                      ...++       +..||+.||.+|++      +.+++.
T Consensus       231 ~~~~l-------i~~~L~~dP~~R~~~~~~~~~~~i~~  261 (329)
T cd05588         231 KASSV-------LKGFLNKDPKERLGCHPQTGFRDIKS  261 (329)
T ss_pred             HHHHH-------HHHHhccCHHHcCCCCCCCCHHHHhc
Confidence            44444       44488999999997      567753

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.55  E-value=1e-14  Score=95.14  Aligned_cols=45  Identities=29%  Similarity=0.457  Sum_probs=36.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .++..|+|||++......++.++||||+|++++++++|..||...
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  213 (327)
T cd08227         169 VKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  213 (327)
T ss_pred             cceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            456779999998432246889999999999999999999998643

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.55  E-value=2e-14  Score=90.53  Aligned_cols=93  Identities=25%  Similarity=0.353  Sum_probs=63.7

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      +..|++||.+  ....++.++|+||+|++++++++ |..|+.......          .......+.....+...+.   
T Consensus       160 ~~~y~~pe~~--~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~---  224 (254)
T cd05083         160 PVKWTAPEAL--KHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSLKE----------VKECVEKGYRMEPPEGCPA---  224 (254)
T ss_pred             CceecCHHHh--ccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCHHH----------HHHHHhCCCCCCCCCcCCH---
Confidence            4569999987  55678889999999999999997 787875432211          1112222222222222333   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                          .+..++.+||+.+|+.||++.+|+..|++
T Consensus       225 ----~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         225 ----DVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             ----HHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence                34556666999999999999999998875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.55  E-value=2.8e-14  Score=91.36  Aligned_cols=107  Identities=24%  Similarity=0.319  Sum_probs=65.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCC-----CCcchhhhHHHHhhhcCCccccccC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHT-----SSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      ..|+..|+|||++  ....++.++|+||+|++++++++++.+........     .......................+.
T Consensus       172 ~~~~~~y~apE~~--~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (284)
T cd05079         172 LDSPVFWYAPECL--IQSKFYIASDVWSFGVTLYELLTYCDSESSPMTLFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPP  249 (284)
T ss_pred             CCCCccccCHHHh--ccCCCCccccchhhhhhhhhhhcCCCCCccccchhhhhcccccccccHHHHHHHHHcCccCCCCC
Confidence            3456679999987  45678889999999999999998765432211000     0000001111111122222222222


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      ..+.       .+..++.+||+.+|++||++.+|+..++++
T Consensus       250 ~~~~-------~~~~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         250 NCPE-------EVYQLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             CCCH-------HHHHHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            2333       466667779999999999999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.55  E-value=6.3e-15  Score=95.80  Aligned_cols=91  Identities=18%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+... .+..+...+..
T Consensus       156 ~~gt~~y~aPE~~--~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~----------~~~~i~~~-~~~~~~~~~~~  222 (316)
T cd05619         156 FCGTPDYIAPEIL--LGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDEEE----------LFQSIRMD-NPCYPRWLTRE  222 (316)
T ss_pred             ecCCccccCHHHH--cCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCHHH----------HHHHHHhC-CCCCCccCCHH
Confidence            4689999999998  55678899999999999999999999986532211          11111111 11223334444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHH-HHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMS-KAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~-~v~~  114 (133)
                      ..++       +..||+.||++|+++. +++.
T Consensus       223 ~~~l-------i~~~l~~~P~~R~~~~~~l~~  247 (316)
T cd05619         223 AKDI-------LVKLFVREPERRLGVKGDIRQ  247 (316)
T ss_pred             HHHH-------HHHHhccCHhhcCCChHHHHc
Confidence            4444       4448899999999996 5643

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.55  E-value=1.1e-14  Score=92.15  Aligned_cols=98  Identities=20%  Similarity=0.303  Sum_probs=62.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||++.. ...++.++|+||+|++++++++|+.|+.......     .    ........ ........  .
T Consensus       166 ~~~~~~y~~Pe~~~~-~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~~~-----~----~~~~~~~~-~~~~~~~~--~  232 (267)
T cd06610         166 FVGTPCWMAPEVMEQ-VHGYDFKADIWSFGITAIELATGAAPYSKYPPMK-----V----LMLTLQND-PPSLETGA--D  232 (267)
T ss_pred             ccCChhhcChHHHcc-ccCcCcccchHhHhHHHHHHHhCCCCccccChhh-----h----HHHHhcCC-CCCcCCcc--c
Confidence            357889999998732 2267889999999999999999999986543221     0    11111111 11111100  0


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .......+..++..||+.||++||++.+|+.
T Consensus       233 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         233 YKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             cccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            1122234556666799999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.55  E-value=7.4e-15  Score=95.61  Aligned_cols=87  Identities=15%  Similarity=0.197  Sum_probs=59.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+... ....+...+.
T Consensus       155 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~----------~~~~i~~~-~~~~~~~~~~  221 (320)
T cd05590         155 TFCGTPDYIAPEIL--QEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDD----------LFEAILND-EVVYPTWLSQ  221 (320)
T ss_pred             ccccCccccCHHHH--cCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHH----------HHHHHhcC-CCCCCCCCCH
Confidence            35689999999998  55678889999999999999999999987543211          11111111 1122333444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                      ...       .++..||+.||.+|+++
T Consensus       222 ~~~-------~li~~~L~~dP~~R~~~  241 (320)
T cd05590         222 DAV-------DILKAFMTKNPTMRLGS  241 (320)
T ss_pred             HHH-------HHHHHHcccCHHHCCCC
Confidence            444       44445889999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.55  E-value=1e-14  Score=96.42  Aligned_cols=45  Identities=22%  Similarity=0.145  Sum_probs=39.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|+.||...
T Consensus       184 ~~~~t~~y~aPE~~--~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  228 (364)
T cd07875         184 PYVVTRYYRAPEVI--LGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  228 (364)
T ss_pred             CCcccCCcCCHHHH--hCCCCCchhhHHhHHHHHHHHHhCCCCCCCC
Confidence            35689999999998  5567889999999999999999999998654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.55  E-value=3e-14  Score=90.43  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=62.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+......++.++|+||+|++++++++|..|+.......      ...+...  .....+..+..... 
T Consensus       169 ~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~-  239 (268)
T cd06624         169 FTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQ------AAMFKVG--MFKIHPEIPESLSA-  239 (268)
T ss_pred             CCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChh------hhHhhhh--hhccCCCCCcccCH-
Confidence            34788999999874323347889999999999999999999986432211      0000110  01111222333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++.+||+.+|++||++.+|+.
T Consensus       240 ------~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         240 ------EAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             ------HHHHHHHHHcCCCchhCCCHHHHHh
Confidence                  3445556699999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.54  E-value=1.4e-14  Score=95.62  Aligned_cols=41  Identities=27%  Similarity=0.451  Sum_probs=34.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNT   46 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~   46 (133)
                      ..||..|+|||++  ....++.++|+||+|+++++++++..++
T Consensus       216 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        216 LAGTVETNAPEVL--ARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             ccccccccCCeec--CCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            4689999999998  5567899999999999999999865544

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.54  E-value=1.8e-14  Score=101.72  Aligned_cols=94  Identities=14%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   81 (133)
                      .++||..|+|||++  ....++.++||||+||++||+++|..||......         ......+.... .+.......
T Consensus       539 ~~vGT~~Y~APE~l--~~~~~~~~~DiwSlG~il~ElltG~~pf~~~~~~---------~~~~~il~~~~~~p~~~~~~~  607 (669)
T cd05610         539 RILGTPDYLAPELL--LGKPHGPAVDWWALGVCLFEFLTGIPPFNDETPQ---------QVFQNILNRDIPWPEGEEKLS  607 (669)
T ss_pred             ceeeCccccCHHHc--CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHH---------HHHHHHHhcCCCCCcccccCC
Confidence            35789999999998  4567889999999999999999999998643211         11111111111 111111112


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             ..+..++..||..||.+||++.+++.
T Consensus       608 -------~~~~~~l~~lL~~dP~~R~ta~e~l~  633 (669)
T cd05610         608 -------VNAQNAIEILLTMDPTKRAGLKELKQ  633 (669)
T ss_pred             -------HHHHHHHHHHcccChhHCcCHHHHHh
Confidence                   23445555699999999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.54  E-value=8.9e-15  Score=93.66  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=38.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|+.||...
T Consensus       161 ~~~~~~y~aPE~~--~~~~~~~~~DiwslGvil~el~~g~~pf~~~  204 (287)
T cd07848         161 YVATRWYRSPELL--LGAPYGKAVDMWSVGCILGELSDGQPLFPGE  204 (287)
T ss_pred             cccccccCCcHHH--cCCCCCCchhHHhHHHHHHHHHhCCCCCCCC
Confidence            4688999999998  4567889999999999999999999998754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.54  E-value=4.2e-14  Score=89.60  Aligned_cols=93  Identities=24%  Similarity=0.310  Sum_probs=62.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhh-cCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLL-EPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..||.......        . ..... .....+..+...+.
T Consensus       168 ~~~~~~~~~pe~~--~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~  236 (265)
T cd06631         168 MHGTPYWMAPEVI--NESGYGRKSDIWSIGCTVFEMATGKPPLASMDRLA--------A-MFYIGAHRGLMPRLPDSFSA  236 (265)
T ss_pred             cCCCccccChhhh--cCCCCcchhhHHHHHHHHHHHHhCCCccccCChHH--------H-HHHhhhccCCCCCCCCCCCH
Confidence            4578899999998  45667889999999999999999999986432110        0 11111 11112222333344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       +..++..||+.+|++||++.+++.
T Consensus       237 ~-------~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         237 A-------AIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             H-------HHHHHHHHhcCCcccCCCHHHHhc
Confidence            3       344555599999999999998874

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.54  E-value=4.1e-14  Score=90.47  Aligned_cols=103  Identities=21%  Similarity=0.283  Sum_probs=63.4

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCC---Ccc---hhhhHHHHhhhcCCccccccCCCC
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTS---STE---MYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..|++||++  ....++.++|+||+|+++++++++..+.........   ...   ..........+........+...+
T Consensus       175 ~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (284)
T cd05081         175 IFWYAPESL--TESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCP  252 (284)
T ss_pred             eEeeCHHHh--ccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHHHHHHHhcCCcCCCCCCCC
Confidence            459999987  456788899999999999999987655432211000   000   001111112222222222222233


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      .       .+..++..||+.+|++|||+.+|++.|+++
T Consensus       253 ~-------~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         253 A-------EIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             H-------HHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            3       455666669999999999999999999865

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.54  E-value=3e-14  Score=91.17  Aligned_cols=103  Identities=19%  Similarity=0.269  Sum_probs=65.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCC--cchhhhHHHHhhhcCCccccccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSS--TEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..|+..|++||++  ....++.++|+||+|++++++++|..||.........  ............... ..+..+..  
T Consensus       162 ~~~~~~~~aPE~~--~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--  236 (284)
T cd06620         162 FVGTSTYMSPERI--QGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQE-PPPRLPSS--  236 (284)
T ss_pred             cccCcccCCHHHH--ccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhc-cCCCCCch--
Confidence            4688999999988  4567888999999999999999999998765432100  001111111111111 11111111  


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                          .....+..++..||+.||++||++.+|++.
T Consensus       237 ----~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~  266 (284)
T cd06620         237 ----DFPEDLRDFVDACLLKDPTERPTPQQLCAM  266 (284)
T ss_pred             ----hcCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence                122345566667999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.54  E-value=1.3e-14  Score=94.39  Aligned_cols=90  Identities=16%  Similarity=0.224  Sum_probs=61.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+.. ..+..+...+..
T Consensus       156 ~~gt~~y~aPE~~--~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~~~----------~~~~i~~-~~~~~~~~~~~~  222 (316)
T cd05592         156 FCGTPDYIAPEIL--KGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDEDE----------LFDSILN-DRPHFPRWISKE  222 (316)
T ss_pred             ccCCccccCHHHH--cCCCCCCcccchhHHHHHHHHHhCCCCCCCCCHHH----------HHHHHHc-CCCCCCCCCCHH
Confidence            4689999999998  55678899999999999999999999987543211          1111111 122233434444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHH-HHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMS-KAV  113 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~-~v~  113 (133)
                      ..+       ++..||+.||++|+++. +++
T Consensus       223 ~~~-------ll~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05592         223 AKD-------CLSKLFERDPTKRLGVDGDIR  246 (316)
T ss_pred             HHH-------HHHHHccCCHHHcCCChHHHH
Confidence            444       44459999999999875 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.54  E-value=3e-15  Score=93.49  Aligned_cols=98  Identities=19%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             CCCccccccCccccc----cccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC
Q 040499            3 DARGTVSYIAPEVFC----RNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         3 ~~~gt~~~~ape~~~----~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      ..|||++|+|||.+.    .....|+.-+|.|+.|++++.++.|++||++...        +.  +.+.+.++....   
T Consensus       181 elCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQ--------ml--MLR~ImeGkyqF---  247 (411)
T KOG0599|consen  181 ELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQ--------ML--MLRMIMEGKYQF---  247 (411)
T ss_pred             HhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHH--------HH--HHHHHHhccccc---
Confidence            468999999999872    2445788899999999999999999999986421        11  222222232211   


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       .++...+.-...-+|+.+|++.||.+|.|+++.++
T Consensus       248 -~speWadis~~~KdLIsrlLqVdp~~Ritake~La  282 (411)
T KOG0599|consen  248 -RSPEWADISATVKDLISRLLQVDPTKRITAKEALA  282 (411)
T ss_pred             -CCcchhhccccHHHHHHHHHeeCchhcccHHHHhc
Confidence             12223333333344444588999999999999875

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.54  E-value=1.8e-14  Score=92.26  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=37.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|..+|...
T Consensus       167 ~~~~~~y~aPE~~--~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~  210 (288)
T cd07863         167 VVVTLWYRAPEVL--LQSTYATPVDMWSVGCIFAEMFRRKPLFCGN  210 (288)
T ss_pred             ccccccccCchHh--hCCCCCCcchhhhHHHHHHHHHhCCcCcCCC
Confidence            4578899999998  4567889999999999999999998888643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.54  E-value=1.5e-14  Score=94.26  Aligned_cols=91  Identities=19%  Similarity=0.252  Sum_probs=62.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..||.......          ....+... ....+...+..
T Consensus       160 ~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~~~----------~~~~~~~~-~~~~~~~~~~~  226 (323)
T cd05584         160 FCGTIEYMAPEIL--MRSGHGKAVDWWSLGALMYDMLTGAPPFTAENRKK----------TIDKILKG-KLNLPPYLTPE  226 (323)
T ss_pred             cCCCccccChhhc--cCCCCCCcceecccHHHHHHHhcCCCCCCCCCHHH----------HHHHHHcC-CCCCCCCCCHH
Confidence            4689999999998  45567889999999999999999999986532211          11111111 12233444444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ..       .++..||+.||++|+     ++.+++.
T Consensus       227 ~~-------~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         227 AR-------DLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             HH-------HHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence            44       444559999999999     7887765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.54  E-value=4.7e-14  Score=92.38  Aligned_cols=118  Identities=17%  Similarity=0.105  Sum_probs=69.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc----------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED----------   73 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   73 (133)
                      ..||..|+|||.+. ....++.++|+||+|++++++++|+.||......      .........+.....          
T Consensus       169 ~~~~~~y~aPE~~~-~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  241 (336)
T cd07849         169 YVATRWYRAPEIML-NSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYL------HQLNLILGVLGTPSQEDLNCIISLR  241 (336)
T ss_pred             cCcCCCccChHHhh-CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHHcCCCCHHHHHHhhchh
Confidence            46788999999862 2346788999999999999999999988543210      000000000000000          


Q ss_pred             ----c-cccCCCC----hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCCCCCCC
Q 040499           74 ----L-KRHGLVT----EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEALQVPPK  128 (133)
Q Consensus        74 ----~-~~~~~~~----~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~~~~~~  128 (133)
                          . ..+....    .........+..++.+||+.||++||++.+++.  .++.......++..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~~~~~~~  307 (336)
T cd07849         242 ARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDPSDEPVA  307 (336)
T ss_pred             hhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCCCCcccC
Confidence                0 0000000    000111234667777899999999999999987  47666655444443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.54  E-value=9.7e-15  Score=93.23  Aligned_cols=95  Identities=22%  Similarity=0.218  Sum_probs=60.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|..|+.......     ............. ........+..
T Consensus       154 ~~~~~~y~aPE~~--~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~  225 (277)
T cd05607         154 RAGTNGYMAPEIL--KEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKV-----AKEELKRRTLEDE-VKFEHQNFTEE  225 (277)
T ss_pred             cCCCCCccCHHHH--ccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchh-----hHHHHHHHhhccc-cccccccCCHH
Confidence            4588999999998  45568899999999999999999999986543211     0001111111111 11111123333


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAV  113 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~  113 (133)
                             +..++..||+.||.+||++.+++
T Consensus       226 -------~~~li~~~L~~~P~~R~~~~~~~  248 (277)
T cd05607         226 -------SKDICRLFLAKKPEDRLGSREKN  248 (277)
T ss_pred             -------HHHHHHHHhccCHhhCCCCccch
Confidence                   44555559999999999996544

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.53  E-value=4.2e-14  Score=91.01  Aligned_cols=98  Identities=17%  Similarity=0.231  Sum_probs=62.0

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc--cCCCCCCCCCCCCCcchhhhHHHHhhhc---CCccccccCCC
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG--VRNNTASGVTHTSSTEMYFPDWFYKLLE---PGEDLKRHGLV   80 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   80 (133)
                      ++..|+|||++  ....++.++|+||+|++++++++  +..|+......      ...........   .......+...
T Consensus       193 ~~~~y~aPE~~--~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  264 (295)
T cd05097         193 LPIRWMAWESI--LLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLSDE------QVIENTGEFFRNQGRQIYLSQTPLC  264 (295)
T ss_pred             CceeecChhhh--ccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccChH------HHHHHHHHhhhhccccccCCCCCCC
Confidence            45689999987  45678999999999999999987  44455432211      11111111111   00011112222


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                      +.       .+.+++..||+.||++||++.+|++.|+.
T Consensus       265 ~~-------~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         265 PS-------PVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             CH-------HHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence            33       46666677999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.53  E-value=1.3e-14  Score=104.61  Aligned_cols=99  Identities=18%  Similarity=0.268  Sum_probs=65.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||+.|+|||++......++.++|||||||++|++++|..||......        .. +...+....... ....+. 
T Consensus       201 ~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~~--------~q-li~~lk~~p~lp-i~~~S~-  269 (1021)
T PTZ00266        201 CVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANNF--------SQ-LISELKRGPDLP-IKGKSK-  269 (1021)
T ss_pred             cCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCcH--------HH-HHHHHhcCCCCC-cCCCCH-
Confidence            4689999999988433345788999999999999999999998643211        11 111222211111 111233 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                            .+..|+..||+.+|.+||++.+++.  .+...
T Consensus       270 ------eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i  301 (1021)
T PTZ00266        270 ------ELNILIKNLLNLSAKERPSALQCLGYQIIKNV  301 (1021)
T ss_pred             ------HHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence                  3455666699999999999999984  44433

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.53  E-value=1.3e-14  Score=93.28  Aligned_cols=91  Identities=16%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++||||+|++++++++|..||.......          ....+... ....+...+..
T Consensus       158 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~----------~~~~i~~~-~~~~~~~~~~~  224 (291)
T cd05612         158 LCGTPEYLAPEVI--QSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFG----------IYEKILAG-KLEFPRHLDLY  224 (291)
T ss_pred             ccCChhhcCHHHH--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH----------HHHHHHhC-CcCCCccCCHH
Confidence            4689999999998  45678899999999999999999999986542211          11111111 11223334444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                      ..+       ++..||+.||.+|++     +++++.
T Consensus       225 ~~~-------li~~~l~~dp~~R~~~~~~~~~~~l~  253 (291)
T cd05612         225 AKD-------LIKKLLVVDRTRRLGNMKNGADDVKN  253 (291)
T ss_pred             HHH-------HHHHHcCCCHHHccCCccCCHHHHhc
Confidence            444       444588999999995     888875

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.53  E-value=1.5e-14  Score=91.83  Aligned_cols=97  Identities=19%  Similarity=0.245  Sum_probs=59.2

Q ss_pred             CccccccCcccccccc-----CccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC
Q 040499            5 RGTVSYIAPEVFCRNF-----GGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~-----~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      .|+..|+|||++....     ..++.++|+||+|++++++++ |..||.......      ......  .........+.
T Consensus       163 ~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~~~------~~~~~~--~~~~~~~~~~~  234 (269)
T cd05087         163 WVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSDEQ------VLTYTV--REQQLKLPKPR  234 (269)
T ss_pred             CCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCChHH------HHHHHh--hcccCCCCCCc
Confidence            4667899999873211     135779999999999999986 888886432211      000000  01111111111


Q ss_pred             ---CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           79 ---LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        79 ---~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                         ..+.       .+..++..|| .+|++||++++|+..|+
T Consensus       235 ~~~~~~~-------~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         235 LKLPLSD-------RWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             cCCCCCh-------HHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence               1122       3445566698 58999999999998875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.53  E-value=1.2e-14  Score=94.56  Aligned_cols=92  Identities=16%  Similarity=0.235  Sum_probs=62.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||++  ....++.++|+||+|++++++++|+.||.......          ....+... ....+...+.
T Consensus       155 ~~~gt~~y~aPE~~--~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~~~----------~~~~i~~~-~~~~p~~~~~  221 (321)
T cd05591         155 TFCGTPDYIAPEIL--QELEYGPSVDWWALGVLMYEMMAGQPPFEADNEDD----------LFESILHD-DVLYPVWLSK  221 (321)
T ss_pred             ccccCccccCHHHH--cCCCCCCccceechhHHHHHHhcCCCCCCCCCHHH----------HHHHHHcC-CCCCCCCCCH
Confidence            35689999999998  45678899999999999999999999997543211          11111111 1122333344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-------CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-------SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-------s~~~v~~  114 (133)
                      ..       ..++..||+.||++|+       ++.+++.
T Consensus       222 ~~-------~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~  253 (321)
T cd05591         222 EA-------VSILKAFMTKNPNKRLGCVASQGGEDAIKQ  253 (321)
T ss_pred             HH-------HHHHHHHhccCHHHcCCCCCCCCCHHHHhc
Confidence            33       3444558899999999       7777764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.53  E-value=2.4e-14  Score=90.22  Aligned_cols=91  Identities=18%  Similarity=0.275  Sum_probs=61.9

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .|+..|+|||..  ....++.++|+||+|++++++++|..|+......         .......... ........+.  
T Consensus       163 ~~~~~~~ape~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---------~~~~~~~~~~-~~~~~~~~~~--  228 (257)
T cd08225         163 VGTPYYLSPEIC--QNRPYNNKTDIWSLGCVLYELCTLKHPFEGNNLH---------QLVLKICQGY-FAPISPNFSR--  228 (257)
T ss_pred             CCCccccCHHHH--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCccHH---------HHHHHHhccc-CCCCCCCCCH--
Confidence            478889999987  4557888999999999999999999988643211         1122222111 1111222233  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                           .+..++.+||+.+|++||++.+|++
T Consensus       229 -----~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         229 -----DLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             -----HHHHHHHHHhccChhhCcCHHHHhh
Confidence                 3555566699999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.53  E-value=4.4e-14  Score=90.12  Aligned_cols=92  Identities=20%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..|+.......          ..........+..+...+. 
T Consensus       161 ~~~~~~y~~PE~~--~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  227 (277)
T cd06641         161 FVGTPFWMAPEVI--KQSAYDSKADIWSLGITAIELAKGEPPHSELHPMK----------VLFLIPKNNPPTLEGNYSK-  227 (277)
T ss_pred             ccCCccccChhhh--ccCCCCchhhHHHHHHHHHHHHcCCCCCCccchHH----------HHHHHhcCCCCCCCcccCH-
Confidence            3578889999987  45567889999999999999999999886432211          1111111222222222333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.+|++||++.+++.
T Consensus       228 ------~~~~~i~~~l~~~p~~Rp~~~~~l~  252 (277)
T cd06641         228 ------PLKEFVEACLNKEPSFRPTAKELLK  252 (277)
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHh
Confidence                  3445556699999999999999987

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.53  E-value=1e-13  Score=91.59  Aligned_cols=44  Identities=27%  Similarity=0.169  Sum_probs=38.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..||...
T Consensus       182 ~~~t~~y~aPE~~--~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         182 YVVTRYYRAPEVI--LGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             CcccCCCCCchhc--cCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            4688999999998  5567889999999999999999999998754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.52  E-value=1.3e-14  Score=94.49  Aligned_cols=87  Identities=16%  Similarity=0.300  Sum_probs=59.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||+.|+|||++  ....++.++|+||+|++++++++|..||.......          ....+... ....+...+.
T Consensus       160 ~~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~~~----------~~~~i~~~-~~~~p~~~s~  226 (323)
T cd05616         160 TFCGTPDYIAPEII--AYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDE----------LFQSIMEH-NVAYPKSMSK  226 (323)
T ss_pred             cCCCChhhcCHHHh--cCCCCCCccchhchhHHHHHHHhCCCCCCCCCHHH----------HHHHHHhC-CCCCCCcCCH
Confidence            35689999999998  55678999999999999999999999987542211          11111111 1122334444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                      ..       ..++..|++.||++|++.
T Consensus       227 ~~-------~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         227 EA-------VAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             HH-------HHHHHHHcccCHHhcCCC
Confidence            44       444455889999999984

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.52  E-value=1.3e-14  Score=101.73  Aligned_cols=96  Identities=23%  Similarity=0.348  Sum_probs=75.7

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      +.|||-|.+  ....|+.++|||+|||++||+++ |..|+.+.....          +...++.+.....|...+-    
T Consensus       864 ikwmale~i--~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~~~e----------I~dlle~geRLsqPpiCti----  927 (1177)
T KOG1025|consen  864 IKWMALESI--RIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIPAEE----------IPDLLEKGERLSQPPICTI----  927 (1177)
T ss_pred             cHHHHHHHh--hccCCCchhhhhhhhhhHHHHHhcCCCccCCCCHHH----------hhHHHhccccCCCCCCccH----
Confidence            578999988  67799999999999999999988 888988765543          5556666666666665554    


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                         .+..+|..||..|++.||.++++...+.++.+.
T Consensus       928 ---DVy~~mvkCwmid~~~rp~fkel~~~fs~~ard  960 (1177)
T KOG1025|consen  928 ---DVYMVMVKCWMIDADSRPTFKELAEEFSRMARD  960 (1177)
T ss_pred             ---HHHHHHHHHhccCcccCccHHHHHHHHHHHhcC
Confidence               456666779999999999999999877766544

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.52  E-value=2.5e-14  Score=91.67  Aligned_cols=92  Identities=17%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc--cCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR--HGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   81 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..|+.......          .............  +...+
T Consensus       175 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  242 (285)
T cd06648         175 LVGTPYWMAPEVI--SRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQ----------AMKRIRDNLPPKLKNLHKVS  242 (285)
T ss_pred             ccCCccccCHHHh--cCCCCCCcccHHHHHHHHHHHHhCCCCCcCCCHHH----------HHHHHHhcCCCCCcccccCC
Confidence            3578899999987  45568889999999999999999999986432110          1111111111111  11122


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       .+..++.+||+.+|++||++.+++.
T Consensus       243 ~-------~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         243 P-------RLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             H-------HHHHHHHHHcccChhhCcCHHHHcc
Confidence            2       4566666799999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.52  E-value=5e-14  Score=90.08  Aligned_cols=95  Identities=14%  Similarity=0.185  Sum_probs=62.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|..||.......     ............  ....+...+..
T Consensus       157 ~~g~~~y~aPE~~--~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~  227 (280)
T cd05608         157 YAGTPGFMAPELL--QGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-----ENKELKQRILND--SVTYPDKFSPA  227 (280)
T ss_pred             cCCCcCccCHHHh--cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcch-----hHHHHHHhhccc--CCCCcccCCHH
Confidence            4688999999998  55678899999999999999999999986543211     000111111111  11223333443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      .       ..++..||+.||++|+     +++++++
T Consensus       228 ~-------~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         228 S-------KSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             H-------HHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence            3       4444558999999999     6777775

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.52  E-value=3.1e-14  Score=92.39  Aligned_cols=46  Identities=20%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||++.+ ...++.++|+||+|++++++++|..||...
T Consensus       174 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         174 PVVVTFWYRAPELLLG-ARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             CccccccccCCHHHcC-CCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence            3568899999998732 245788999999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.52  E-value=6.4e-14  Score=89.56  Aligned_cols=95  Identities=18%  Similarity=0.240  Sum_probs=61.4

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhc-CCccccccCC
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLE-PGEDLKRHGL   79 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   79 (133)
                      ..|+..|++||++..   ....++.++|+||+|++++++++|..|+.......      .   ...... .......+..
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~------~---~~~~~~~~~~~~~~~~~  233 (282)
T cd06643         163 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNPMR------V---LLKIAKSEPPTLAQPSR  233 (282)
T ss_pred             ccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCHHH------H---HHHHhhcCCCCCCCccc
Confidence            457889999998721   22356779999999999999999999886532211      0   111111 1111112222


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.       .+..++..||+.||++||++.++++
T Consensus       234 ~~~-------~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         234 WSS-------EFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             cCH-------HHHHHHHHHccCChhhCcCHHHHhc
Confidence            333       3445556699999999999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.52  E-value=2.9e-14  Score=90.07  Aligned_cols=112  Identities=14%  Similarity=0.130  Sum_probs=68.2

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCc-----chhhhHHHHhhhcCCc----
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSST-----EMYFPDWFYKLLEPGE----   72 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----   72 (133)
                      |.++.|.||.|||.+-+ .-+|...+|||++||++.|+++|.+-|.+...-+...     -..+............    
T Consensus       159 TDYVATRWYRaPELLvG-DtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~G  237 (396)
T KOG0593|consen  159 TDYVATRWYRAPELLVG-DTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHG  237 (396)
T ss_pred             hhhhhhhhccChhhhcc-cCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceee
Confidence            45678999999998722 2589999999999999999999988665432211000     0000000111111110    


Q ss_pred             ----cccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           73 ----DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        73 ----~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                          .+..++............++.++..|++.||++|+++++++.
T Consensus       238 v~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~  283 (396)
T KOG0593|consen  238 VRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLH  283 (396)
T ss_pred             eecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhc
Confidence                001111112223333446788899999999999999999874

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=6e-14  Score=89.38  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=61.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|+|||.+. ....++.++|+||+|++++++++|..|+.......          ..........+..+..    
T Consensus       161 ~~~~~~y~aPE~~~-~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~----  225 (277)
T cd06917         161 FVGTPYWMAPEVIT-EGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFR----------AMMLIPKSKPPRLEDN----  225 (277)
T ss_pred             ccCCcceeCHHHhc-cCCccccchhHHHHHHHHHHHHhCCCCCCCCChhh----------hhhccccCCCCCCCcc----
Confidence            45788899999873 13356889999999999999999999986542211          1111111111111111    


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                        .....+..++..||+.||++||++.+++.
T Consensus       226 --~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         226 --GYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             --cCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence              01224556666799999999999999976

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.52  E-value=1e-13  Score=94.13  Aligned_cols=42  Identities=24%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTA   47 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~   47 (133)
                      ..||..|++||++  ....++.++||||+|+++||++.+..++.
T Consensus       322 ~~GT~~Y~APE~~--~~~~~~~~sDvwSlGviL~El~~g~~~lf  363 (461)
T PHA03211        322 IAGTVDTNAPEVL--AGDPYTPSVDIWSAGLVIFEAAVHTASLF  363 (461)
T ss_pred             cCCCcCCcCHHHH--cCCCCCchHHHHHHHHHHHHHHHcCCCcc
Confidence            4699999999998  55678899999999999999998776543

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.52  E-value=4.1e-14  Score=92.38  Aligned_cols=94  Identities=16%  Similarity=0.333  Sum_probs=61.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||++  ....++.++|+||+|++++++++|..||........   .............. ....+...+.
T Consensus       155 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~---~~~~~~~~~~~~~~-~~~~p~~~~~  228 (327)
T cd05617         155 TFCGTPNYIAPEIL--RGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPD---MNTEDYLFQVILEK-PIRIPRFLSV  228 (327)
T ss_pred             cccCCcccCCHHHH--CCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcc---cccHHHHHHHHHhC-CCCCCCCCCH
Confidence            35689999999998  556788999999999999999999999965332211   11111222222111 2233444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                      ...+++.+       ||+.||++|+++
T Consensus       229 ~~~~li~~-------~L~~dP~~R~~~  248 (327)
T cd05617         229 KASHVLKG-------FLNKDPKERLGC  248 (327)
T ss_pred             HHHHHHHH-------HhccCHHHcCCC
Confidence            44444444       889999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.52  E-value=4.4e-15  Score=96.80  Aligned_cols=92  Identities=18%  Similarity=0.303  Sum_probs=63.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++  ....++.++|+||+|++++++++|..||.......          ...... ......+...+.
T Consensus       155 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~----------~~~~i~-~~~~~~p~~~~~  221 (325)
T cd05594         155 TFCGTPEYLAPEVL--EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEK----------LFELIL-MEEIRFPRTLSP  221 (325)
T ss_pred             cccCCcccCCHHHH--ccCCCCCccccccccceeeeeccCCCCCCCCCHHH----------HHHHHh-cCCCCCCCCCCH
Confidence            35689999999998  55678899999999999999999999986532211          111111 112223444455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...+       ++..||+.||++|+     ++.+++.
T Consensus       222 ~~~~-------li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         222 EAKS-------LLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             HHHH-------HHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence            4444       44458899999997     8888874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.52  E-value=1e-13  Score=88.88  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=63.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+|+..|++||.+  ....++.++|+||+|++++++++|..||.......      ........+... ....+...+. 
T Consensus       161 ~~~~~~y~aPE~~--~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~-  230 (285)
T cd05605         161 RVGTVGYMAPEVV--KNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKV------KREEVERRVKED-QEEYSEKFSE-  230 (285)
T ss_pred             ccCCCCccCcHHh--cCCCCCccccchhHHHHHHHHHHCCCCCCCCchhh------HHHHHHHHhhhc-ccccCcccCH-
Confidence            4688999999998  45678889999999999999999999987543211      000111111111 1112222333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                            .+..++..||+.||++||     ++++++.
T Consensus       231 ------~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         231 ------AARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             ------HHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence                  344555669999999999     8888864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.51  E-value=4.1e-14  Score=89.05  Aligned_cols=92  Identities=25%  Similarity=0.409  Sum_probs=62.7

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|++||.+  ....++.++|+|++|++++++++ +..|+......      .    .............+...+.  
T Consensus       166 ~~~~y~~Pe~~--~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  231 (258)
T smart00219      166 LPIRWMAPESL--KDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMSNE------E----VLEYLKKGYRLPKPENCPP--  231 (258)
T ss_pred             CcccccChHHh--ccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHhcCCCCCCCCcCCH--
Confidence            56789999987  55678899999999999999998 66776542111      1    1222222222222333333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHH
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEML  116 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l  116 (133)
                           .+..++.+||..||++||++.+++..|
T Consensus       232 -----~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      232 -----EIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             -----HHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence                 455566679999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.51  E-value=3.9e-14  Score=95.87  Aligned_cols=110  Identities=13%  Similarity=0.092  Sum_probs=65.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC-----------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG-----------   71 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   71 (133)
                      +..||..|+|||++.+ ...++.++||||+|++++++++|..||.+.....      ....+...+...           
T Consensus       229 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~~------~~~~i~~~~~~p~~~~~~~~~~~  301 (440)
T PTZ00036        229 SYICSRFYRAPELMLG-ATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVD------QLVRIIQVLGTPTEDQLKEMNPN  301 (440)
T ss_pred             cCCCCcCccCHHHhcC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH------HHHHHHHHhCCCCHHHHHHhchh
Confidence            3568899999998732 2468899999999999999999999987543211      000011000000           


Q ss_pred             -ccccccCCCChhHHH-----HHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           72 -EDLKRHGLVTEEEEV-----IVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        72 -~~~~~~~~~~~~~~~-----~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                       .....+.........     ....+..|+..||++||.+|+++.+++.  .++.+
T Consensus       302 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~  357 (440)
T PTZ00036        302 YADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDL  357 (440)
T ss_pred             hhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhh
Confidence             000001100011100     1124556667799999999999999984  44443

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.51  E-value=6.4e-14  Score=91.96  Aligned_cols=46  Identities=20%  Similarity=0.266  Sum_probs=38.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +.+||..|+|||++.. ...++.++||||+|++++++++|..||...
T Consensus       174 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~el~~g~~pf~~~  219 (343)
T cd07878         174 GYVATRWYRAPEIMLN-WMHYNQTVDIWSVGCIMAELLKGKALFPGN  219 (343)
T ss_pred             CccccccccCchHhcC-CccCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence            4578999999998732 246788999999999999999999988643

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.51  E-value=1.7e-14  Score=95.33  Aligned_cols=119  Identities=13%  Similarity=0.133  Sum_probs=80.7

Q ss_pred             CCccccccCcccccccc----CccccccchhhhhHHHHHHHccCCCCCC-C-------CCCCCCcchhhhHHHHhhhcCC
Q 040499            4 ARGTVSYIAPEVFCRNF----GGISHKSDVYGFGMTVLELVGVRNNTAS-G-------VTHTSSTEMYFPDWFYKLLEPG   71 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~----~~~~~~~dv~s~g~~~~~l~~~~~p~~~-~-------~~~~~~~~~~~~~~~~~~~~~~   71 (133)
                      -+||..|||||++.+.-    ...-...||||+|.++||++++..-... .       +....+....+.+.....+.++
T Consensus       378 qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK  457 (534)
T KOG3653|consen  378 QVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKK  457 (534)
T ss_pred             hhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCCHHHHHHHHHhhc
Confidence            57999999999983210    1122468999999999999987654431 1       1111223333334334444555


Q ss_pred             ccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           72 EDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                      ..+..+..+..+  ..+..+...++.||..|++.|.|+..+.+++.++.....
T Consensus       458 ~RP~~p~~W~~h--~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~  508 (534)
T KOG3653|consen  458 QRPKIPDAWRKH--AGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWE  508 (534)
T ss_pred             cCCCChhhhhcC--ccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCC
Confidence            566666655544  456678899999999999999999999998887766543

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.51  E-value=3.7e-14  Score=92.67  Aligned_cols=96  Identities=20%  Similarity=0.248  Sum_probs=62.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++.. ...++.++||||+|++++++++|..||.......  .    .......+.. ..+..+...+..
T Consensus       166 ~~gt~~y~aPE~~~~-~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~--~----~~~~~~~~~~-~~~~~~~~~~~~  237 (332)
T cd05614         166 FCGTIEYMAPEIIRG-KGGHGKAVDWWSLGILIFELLTGASPFTLEGERN--T----QSEVSRRILK-CDPPFPSFIGPE  237 (332)
T ss_pred             ccCCccccCHHHhcC-CCCCCCccccccchhhhhhhhcCCCCCCCCCCCC--C----HHHHHHHHhc-CCCCCCCCCCHH
Confidence            468999999999832 2346788999999999999999999986543221  0    0111111111 112233344454


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ..+       ++..||+.||++|+     ++.++++
T Consensus       238 ~~~-------li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         238 AQD-------LLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             HHH-------HHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            444       44459999999999     6777764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.51  E-value=6.5e-14  Score=88.31  Aligned_cols=94  Identities=17%  Similarity=0.253  Sum_probs=61.4

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHcc-CCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGV-RNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|++||++......++.++|+||+|+++++++++ ..|+.......          ...........  +....  
T Consensus       165 ~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~p~~~~~~~~----------~~~~~~~~~~~--~~~~~--  230 (259)
T cd05037         165 VERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEEPLSTLSSSE----------KERFYQDQHRL--PMPDC--  230 (259)
T ss_pred             ccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCCCcccCCchh----------HHHHHhcCCCC--CCCCc--
Confidence            46778999999832223678899999999999999984 55554432110          11111111111  11111  


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                           ..+..++..||+.+|.+||++.+|++.|+
T Consensus       231 -----~~~~~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         231 -----AELANLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             -----hHHHHHHHHHhccChhhCCCHHHHHHhcC
Confidence                 35667777799999999999999998774

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.51  E-value=3e-14  Score=94.27  Aligned_cols=106  Identities=18%  Similarity=0.155  Sum_probs=70.8

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---------
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---------   72 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   72 (133)
                      |.++.|.||.|||++.+ .+-|+.+.|+|++||++.|+.+-++-|.+..+      .+..-.+...+-...         
T Consensus       167 TeYVSTRWYRAPEvLLr-s~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE------~Dqi~KIc~VLGtP~~~~~~eg~~  239 (538)
T KOG0661|consen  167 TEYVSTRWYRAPEVLLR-SGYYSSPVDMWAVGCIMAELYSLRPLFPGASE------IDQIYKICEVLGTPDKDSWPEGYN  239 (538)
T ss_pred             chhhhcccccchHHhhh-ccccCCchHHHHHHHHHHHHHHhcccCCCCcH------HHHHHHHHHHhCCCccccchhHHH
Confidence            45788999999999853 57899999999999999999887776655432      111222222221110         


Q ss_pred             ---------cccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           73 ---------DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        73 ---------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                               +...+........++...+.+|+.+|+.-||++||++.+.++
T Consensus       240 La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~  290 (538)
T KOG0661|consen  240 LASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQ  290 (538)
T ss_pred             HHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhc
Confidence                     111122222333345556778888899999999999999886

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.51  E-value=5.2e-14  Score=91.24  Aligned_cols=105  Identities=19%  Similarity=0.287  Sum_probs=62.5

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhh----hcCCc--------
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKL----LEPGE--------   72 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------   72 (133)
                      .++..|+|||++......++.++|+||+|++++++++|..||........     ........    +....        
T Consensus       169 ~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  243 (314)
T cd08216         169 VKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQM-----LLEKVRGTVPCLLDKSTYPLYEDSM  243 (314)
T ss_pred             cccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHH-----HHHHHhccCccccccCchhhhcCCc
Confidence            46778999998743234578899999999999999999999875322110     00000000    00000        


Q ss_pred             --------cccccC-CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           73 --------DLKRHG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        73 --------~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                              ...... ............+..++..||+.||++||+++++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  294 (314)
T cd08216         244 SQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLN  294 (314)
T ss_pred             CcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence                    000000 000011122235667788899999999999999986

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.51  E-value=1e-13  Score=88.76  Aligned_cols=95  Identities=20%  Similarity=0.264  Sum_probs=62.0

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc--ccccC
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED--LKRHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   78 (133)
                      ..|+..|+|||++..   ....++.++|+||+|++++++++|+.|+.......        . ... ......  ...+.
T Consensus       184 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~~~--------~-~~~-~~~~~~~~~~~~~  253 (286)
T cd06638         184 SVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHPMR--------A-LFK-IPRNPPPTLHQPE  253 (286)
T ss_pred             ccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCchhH--------H-Hhh-ccccCCCcccCCC
Confidence            358889999998731   12357789999999999999999999986542211        0 111 111111  11122


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                      ..+.       .+..++..||+.||++||++.+|++.
T Consensus       254 ~~~~-------~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         254 LWSN-------EFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             CcCH-------HHHHHHHHHccCCcccCCCHHHHhhc
Confidence            2222       35556667999999999999999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.51  E-value=6.9e-14  Score=89.22  Aligned_cols=93  Identities=18%  Similarity=0.260  Sum_probs=61.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHH-ccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV-GVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .|+..|++||.+.. ...++.++|+||||+++++++ .+..|+.......          ........  ...+..... 
T Consensus       181 ~~~~~~~aPe~~~~-~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~~~----------~~~~~~~~--~~~~~~~~~-  246 (274)
T cd05076         181 VERIPWIAPECVPG-GNSLSTAADKWSFGTTLLEICFDGEVPLKERTPSE----------KERFYEKK--HRLPEPSCK-  246 (274)
T ss_pred             ccCCcccCchhhcC-CCCCCcHHHHHHHHHHHHHHHhCCCCCccccChHH----------HHHHHHhc--cCCCCCCCh-
Confidence            46788999998732 246789999999999999984 6777776432211          11111111  111111122 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                            .+..++..||+.+|++||++.+|++.|.
T Consensus       247 ------~~~~li~~cl~~~p~~Rps~~~il~~L~  274 (274)
T cd05076         247 ------ELATLISQCLTYEPTQRPSFRTILRDLT  274 (274)
T ss_pred             ------HHHHHHHHHcccChhhCcCHHHHHHhhC
Confidence                  3556667799999999999999998763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.51  E-value=5.7e-14  Score=89.67  Aligned_cols=105  Identities=23%  Similarity=0.348  Sum_probs=66.6

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCC-----cchhhhHHHHhhhcCCccccccCCC
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSS-----TEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ++..|++||.+  ....++.++|+||+|++++++++|..|+.........     ............+........+...
T Consensus       174 ~~~~~~~Pe~~--~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (284)
T cd05038         174 SPIFWYAPECL--RTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSC  251 (284)
T ss_pred             CcccccCcHHH--ccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcCCcCCCCccC
Confidence            34569999987  4557888999999999999999998886543221100     0000111111222222111112222


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      +       ..+..++.+||+.+|++||++.+|+..|+++
T Consensus       252 ~-------~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         252 P-------DEVYDLMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             C-------HHHHHHHHHHhccChhhCCCHHHHHHHHhhc
Confidence            2       3466677779999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.51  E-value=3.2e-14  Score=90.45  Aligned_cols=99  Identities=22%  Similarity=0.296  Sum_probs=61.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+......++.++|+||+|++++++++|..|+......        .. .............+....  
T Consensus       170 ~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~--  238 (272)
T cd06629         170 MQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAI--------AA-MFKLGNKRSAPPIPPDVS--  238 (272)
T ss_pred             ccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchH--------HH-HHHhhccccCCcCCcccc--
Confidence            3578889999987322224788999999999999999999988532111        00 111111111111111110  


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       ......+..++..||+.+|++||++.+|+.
T Consensus       239 -~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         239 -MNLSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             -ccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence             112234455556699999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.51  E-value=3e-14  Score=90.33  Aligned_cols=99  Identities=16%  Similarity=0.220  Sum_probs=61.0

Q ss_pred             CCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|++||.+.. ....++.++|+||+|++++++++|..|+........         ................   
T Consensus       166 ~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~---------~~~~~~~~~~~~~~~~---  233 (267)
T cd06646         166 FIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRA---------LFLMSKSNFQPPKLKD---  233 (267)
T ss_pred             cccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhh---------heeeecCCCCCCCCcc---
Confidence            457889999998732 133467889999999999999999998754322110         0000000000000000   


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                       .......+.+++..||+.+|++||++++|++.
T Consensus       234 -~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         234 -KTKWSSTFHNFVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             -ccccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence             00112345566667999999999999998864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.50  E-value=4.8e-14  Score=91.22  Aligned_cols=95  Identities=22%  Similarity=0.263  Sum_probs=62.1

Q ss_pred             CCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|+|||++.. ....++.++|||+||+++|++++|..|+.......         ..............+..   
T Consensus       171 ~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~~~---------~~~~~~~~~~~~~~~~~---  238 (307)
T cd06607         171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---------ALYHIAQNDSPTLSSND---  238 (307)
T ss_pred             ccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccHHH---------HHHHHhcCCCCCCCchh---
Confidence            457889999998731 23467889999999999999999999886432110         01111111111111111   


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                          ....+..++..||+.+|++||++.+|+.
T Consensus       239 ----~~~~~~~li~~~l~~~p~~Rp~~~~il~  266 (307)
T cd06607         239 ----WSDYFRNFVDSCLQKIPQDRPSSEELLK  266 (307)
T ss_pred             ----hCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                2234566667799999999999999976

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.50  E-value=3.7e-14  Score=91.26  Aligned_cols=92  Identities=15%  Similarity=0.186  Sum_probs=61.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc--cCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR--HGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   81 (133)
                      ..|+..|+|||.+  ....++.++|+||+|++++++++|..|+.......          .............  ....+
T Consensus       178 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  245 (292)
T cd06658         178 LVGTPYWMAPEVI--SRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPPLQ----------AMRRIRDNLPPRVKDSHKVS  245 (292)
T ss_pred             eecCccccCHHHH--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH----------HHHHHHhcCCCccccccccC
Confidence            3578899999988  55678889999999999999999999986432110          1111111111111  11123


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       +..++..||+.||++||++.++++
T Consensus       246 ~~-------~~~li~~~l~~~P~~Rpt~~~il~  271 (292)
T cd06658         246 SV-------LRGFLDLMLVREPSQRATAQELLQ  271 (292)
T ss_pred             HH-------HHHHHHHHccCChhHCcCHHHHhh
Confidence            32       334445599999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.50  E-value=8.3e-14  Score=91.83  Aligned_cols=44  Identities=25%  Similarity=0.190  Sum_probs=38.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|+.||.+.
T Consensus       178 ~~~t~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~g~~pf~~~  221 (355)
T cd07874         178 YVVTRYYRAPEVI--LGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_pred             ccccCCccCHHHH--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            4689999999998  4567889999999999999999999998654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.50  E-value=2.5e-14  Score=93.92  Aligned_cols=92  Identities=17%  Similarity=0.236  Sum_probs=63.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+..+ ....+...+.
T Consensus       187 ~~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~----------~~~~i~~~-~~~~p~~~~~  253 (340)
T PTZ00426        187 TLCGTPEYIAPEIL--LNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLL----------IYQKILEG-IIYFPKFLDN  253 (340)
T ss_pred             eecCChhhcCHHHH--hCCCCCccccccchhhHHHHHhcCCCCCCCCCHHH----------HHHHHhcC-CCCCCCCCCH
Confidence            35689999999998  45667889999999999999999999987532210          11112211 1123444455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...+++++       |++.||.+|+     +++++++
T Consensus       254 ~~~~li~~-------~l~~dp~~R~~~~~~~~~~~~~  283 (340)
T PTZ00426        254 NCKHLMKK-------LLSHDLTKRYGNLKKGAQNVKE  283 (340)
T ss_pred             HHHHHHHH-------HcccCHHHcCCCCCCCHHHHHc
Confidence            44444444       8899999995     8888875

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.50  E-value=1.6e-13  Score=87.89  Aligned_cols=97  Identities=19%  Similarity=0.256  Sum_probs=62.2

Q ss_pred             CCccccccCccccccc----cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC
Q 040499            4 ARGTVSYIAPEVFCRN----FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL   79 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~----~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (133)
                      ..|+..|++||.+...    ...++.++|+||+|++++++++|..||.......      ... .............+..
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~------~~~-~~~~~~~~~~~~~~~~  233 (286)
T cd06622         161 NIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETYAN------IFA-QLSAIVDGDPPTLPSG  233 (286)
T ss_pred             CCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcchhh------HHH-HHHHHhhcCCCCCCcc
Confidence            3577889999987321    1235788999999999999999999986532211      000 1111112222233333


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+....       .++..||+.+|++||++.+++.
T Consensus       234 ~~~~~~-------~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         234 YSDDAQ-------DFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             cCHHHH-------HHHHHHcccCcccCCCHHHHhc
Confidence            444443       4445599999999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.50  E-value=1.4e-13  Score=91.97  Aligned_cols=45  Identities=18%  Similarity=0.287  Sum_probs=39.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      .+||..|+|||++  ....++.++||||+|++++++++|+.|+.+..
T Consensus       247 ~~gt~~y~aPE~~--~~~~~~~~~DvwslGvil~el~~g~~pf~~~~  291 (392)
T PHA03207        247 WSGTLETNSPELL--ALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQ  291 (392)
T ss_pred             cccccCccCHhHh--cCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence            4689999999998  55678899999999999999999999987643

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.50  E-value=7.2e-14  Score=90.50  Aligned_cols=96  Identities=23%  Similarity=0.295  Sum_probs=62.3

Q ss_pred             CCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|++||.+.. ....++.++||||+|++++++++|..|+.......         ..................+.
T Consensus       171 ~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  241 (308)
T cd06634         171 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---------ALYHIAQNESPALQSGHWSE  241 (308)
T ss_pred             ccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccHHH---------HHHHHhhcCCCCcCcccccH
Confidence            467889999998631 23457789999999999999999998876432110         01111111111111112222


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                             .+..++.+||+.+|++||++.+|+..
T Consensus       242 -------~~~~li~~cl~~~P~~Rp~~~~ll~~  267 (308)
T cd06634         242 -------YFRNFVDSCLQKIPQDRPTSEVLLKH  267 (308)
T ss_pred             -------HHHHHHHHHhhCCcccCCCHHHHhhC
Confidence                   34556666999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.50  E-value=1.5e-14  Score=94.27  Aligned_cols=90  Identities=19%  Similarity=0.202  Sum_probs=60.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||.......          ....+... ....+...+.
T Consensus       155 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~----------~~~~i~~~-~~~~~~~~~~  221 (325)
T cd05602         155 TFCGTPEYLAPEVL--HKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAE----------MYDNILNK-PLQLKPNITN  221 (325)
T ss_pred             cccCCccccCHHHH--cCCCCCCccccccccHHHHHHhcCCCCCCCCCHHH----------HHHHHHhC-CcCCCCCCCH
Confidence            35689999999998  55678899999999999999999999986532211          11111111 1112223444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKA  112 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v  112 (133)
                      ...+++.       .||+.||.+|+++.+.
T Consensus       222 ~~~~li~-------~~l~~~p~~R~~~~~~  244 (325)
T cd05602         222 SARHLLE-------GLLQKDRTKRLGAKDD  244 (325)
T ss_pred             HHHHHHH-------HHcccCHHHCCCCCCC
Confidence            4444444       4889999999987643

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.49  E-value=1.4e-13  Score=88.70  Aligned_cols=92  Identities=20%  Similarity=0.263  Sum_probs=61.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc--ccccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED--LKRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   81 (133)
                      ..|+..|++||++  ....++.++|+||+|++++++++|+.|+.......          ....+.....  .......+
T Consensus       177 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  244 (297)
T cd06659         177 LVGTPYWMAPEVI--SRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSPVQ----------AMKRLRDSPPPKLKNAHKIS  244 (297)
T ss_pred             eecCccccCHHHH--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH----------HHHHHhccCCCCccccCCCC
Confidence            4578899999998  45577889999999999999999999986432110          1111111111  11112223


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       +..++..||+.+|++||++++|++
T Consensus       245 ~~-------l~~~i~~~l~~~P~~Rps~~~ll~  270 (297)
T cd06659         245 PV-------LRDFLERMLTREPQERATAQELLD  270 (297)
T ss_pred             HH-------HHHHHHHHhcCCcccCcCHHHHhh
Confidence            33       444555699999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.49  E-value=3.4e-14  Score=92.60  Aligned_cols=86  Identities=16%  Similarity=0.303  Sum_probs=59.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++|+||+|++++++++|+.||.......          ....+... ....+...+..
T Consensus       161 ~~gt~~y~aPE~~--~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~----------~~~~i~~~-~~~~~~~~~~~  227 (324)
T cd05587         161 FCGTPDYIAPEII--AYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE----------LFQSIMEH-NVSYPKSLSKE  227 (324)
T ss_pred             ecCCccccChhhh--cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHH----------HHHHHHcC-CCCCCCCCCHH
Confidence            4689999999998  55678899999999999999999999986542211          11111111 11223334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                      .       ..++..||+.||.+|++.
T Consensus       228 ~-------~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         228 A-------VSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             H-------HHHHHHHhhcCHHHcCCC
Confidence            3       444455899999999976

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.49  E-value=5.5e-14  Score=91.23  Aligned_cols=93  Identities=19%  Similarity=0.210  Sum_probs=62.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      +.||..|++||++  ....++.++|+||+|++++++++|..||.......     .    .................+. 
T Consensus       192 ~~g~~~y~aPE~~--~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~-  259 (316)
T cd05574         192 FVGTEEYIAPEVI--SGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNRDE-----T----FSNILKKEVTFPGSPPVSS-  259 (316)
T ss_pred             CcCccCCcCHHHH--cCCCCCchHHHHHHHHHHHHHhhCCCCCCCCchHH-----H----HHHHhcCCccCCCccccCH-
Confidence            4688899999998  45677889999999999999999999986433211     0    1111111111111111233 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC----HHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS----MSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps----~~~v~~  114 (133)
                            .+..++..||+.||++||+    +.+++.
T Consensus       260 ------~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         260 ------SARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             ------HHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence                  4555666699999999999    888876

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.49  E-value=9.9e-14  Score=91.76  Aligned_cols=95  Identities=20%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC--CCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG--LVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   81 (133)
                      .+||..|+|||++  ....++.++|+||+|++++++++|..||.......      .   .............+.  ..+
T Consensus       196 ~~Gt~~Y~aPE~~--~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~~~~------~---~~~i~~~~~~~~~p~~~~~s  264 (363)
T cd05628         196 TVGTPDYIAPEVF--MQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQE------T---YKKVMNWKETLIFPPEVPIS  264 (363)
T ss_pred             ccCCccccCHHHH--cCCCCCCchhhhhhHHHHHHHHhCCCCCCCCCHHH------H---HHHHHcCcCcccCCCcCCCC
Confidence            5799999999998  55678899999999999999999999997543211      0   111111111111222  235


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....+++.+++     |...++..||++++|++
T Consensus       265 ~~~~~li~~l~-----~~~~~r~~r~~~~ei~~  292 (363)
T cd05628         265 EKAKDLILRFC-----CEWEHRIGAPGVEEIKT  292 (363)
T ss_pred             HHHHHHHHHHc-----CChhhcCCCCCHHHHhC
Confidence            55556655543     55556667899999986

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.49  E-value=2.9e-14  Score=89.63  Aligned_cols=84  Identities=19%  Similarity=0.364  Sum_probs=66.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.|||+-|+|||++  ....|+..+|.|++|++.+||+.|.+||....+..          +...+.++ ....|...+.
T Consensus       200 TlCGTPeYLAPEii--~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~----------iY~KI~~~-~v~fP~~fs~  266 (355)
T KOG0616|consen  200 TLCGTPEYLAPEII--QSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQ----------IYEKILEG-KVKFPSYFSS  266 (355)
T ss_pred             EecCCccccChHHh--hcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHH----------HHHHHHhC-cccCCcccCH
Confidence            47899999999999  67899999999999999999999999998654421          44444333 3345777888


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDR  106 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~R  106 (133)
                      ...++++.++       +.|-.+|
T Consensus       267 ~~kdLl~~LL-------~vD~t~R  283 (355)
T KOG0616|consen  267 DAKDLLKKLL-------QVDLTKR  283 (355)
T ss_pred             HHHHHHHHHH-------hhhhHhh
Confidence            8888888876       7776666

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.49  E-value=7.8e-14  Score=88.14  Aligned_cols=92  Identities=17%  Similarity=0.254  Sum_probs=62.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||..  ....++.++|+|++|+++++++++..|+......         . .......+..+..+...+. 
T Consensus       165 ~~~~~~~~~pe~~--~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~-  231 (260)
T cd08222         165 FTGTPYYMSPEAL--KHQGYDSKSDIWSLGCILYEMCCLAHAFEGQNFL---------S-VVLRIVEGPTPSLPETYSR-  231 (260)
T ss_pred             CCCCcCccCHHHH--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCccHH---------H-HHHHHHcCCCCCCcchhcH-
Confidence            4577889999987  4456788999999999999999999887532110         1 1111111222222332333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.+|++||++.+++.
T Consensus       232 ------~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         232 ------QLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             ------HHHHHHHHHhcCChhhCcCHHHHhh
Confidence                  4455666699999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.49  E-value=1.7e-13  Score=86.73  Aligned_cols=98  Identities=20%  Similarity=0.225  Sum_probs=63.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..|+.......    .......... .....+..+..    
T Consensus       159 ~~~~~~y~~PE~~--~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~----  227 (265)
T cd06605         159 FVGTSSYMAPERI--QGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPP----DGIFELLQYI-VNEPPPRLPSG----  227 (265)
T ss_pred             ccCChhccCHHHH--cCCCCCchhhHHHHHHHHHHHHhCCCCCCcccccc----ccHHHHHHHH-hcCCCCCCChh----
Confidence            3577889999988  45678899999999999999999999986542211    0011111111 11111112211    


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                        .....+..++..||..||++||++.+++.
T Consensus       228 --~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         228 --KFSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             --hcCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence              02223556666699999999999999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.49  E-value=3.1e-14  Score=102.32  Aligned_cols=90  Identities=23%  Similarity=0.247  Sum_probs=59.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||.+|+|||++  ....++.++|||||||+++|++++..++.....       .+.......     .   +....  
T Consensus       175 ~~gt~~Y~APE~~--~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~-------~~~~~~~~~-----~---~~~~~--  235 (793)
T PLN00181        175 AMEMSWYTSPEED--NGSSSNCASDVYRLGVLLFELFCPVSSREEKSR-------TMSSLRHRV-----L---PPQIL--  235 (793)
T ss_pred             cCCCcceEChhhh--ccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH-------HHHHHHHhh-----c---Chhhh--
Confidence            4688999999998  566789999999999999999987666432110       000111000     0   11000  


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                        ........++..||+.+|.+||++.+|++
T Consensus       236 --~~~~~~~~~~~~~L~~~P~~Rps~~eil~  264 (793)
T PLN00181        236 --LNWPKEASFCLWLLHPEPSCRPSMSELLQ  264 (793)
T ss_pred             --hcCHHHHHHHHHhCCCChhhCcChHHHhh
Confidence              01122345566799999999999999975

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.49  E-value=1.5e-13  Score=86.92  Aligned_cols=95  Identities=19%  Similarity=0.326  Sum_probs=60.9

Q ss_pred             CCccccccCcccccccc-CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC--
Q 040499            4 ARGTVSYIAPEVFCRNF-GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV--   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~-~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   80 (133)
                      ..|+..|++||++.... ..++.++|+|++|++++++++|..||......      ...  ... ......+..+...  
T Consensus       163 ~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~------~~~--~~~-~~~~~~~~~~~~~~~  233 (264)
T cd06626         163 LAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNE------FQI--MFH-VGAGHKPPIPDSLQL  233 (264)
T ss_pred             CcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcch------HHH--HHH-HhcCCCCCCCccccc
Confidence            45778999999983221 23788999999999999999999998643211      000  111 1112122222211  


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.       .+..++..||+.+|.+||++.+++.
T Consensus       234 ~~-------~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         234 SP-------EGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             CH-------HHHHHHHHHccCCcccCCCHHHHhc
Confidence            33       3345555699999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.49  E-value=9.9e-14  Score=90.19  Aligned_cols=97  Identities=21%  Similarity=0.284  Sum_probs=63.5

Q ss_pred             CCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|++||.+.. ....++.++|+||+|++++++++|..|+.......         ..................+.
T Consensus       181 ~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  251 (317)
T cd06635         181 FVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---------ALYHIAQNESPTLQSNEWSD  251 (317)
T ss_pred             ccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccHHH---------HHHHHHhccCCCCCCccccH
Confidence            457889999998621 23467889999999999999999999876432110         01111111111111122222


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEML  116 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l  116 (133)
                             .+..++..||+.+|.+||++.+|+..+
T Consensus       252 -------~l~~li~~~l~~~p~~Rpt~~~il~~~  278 (317)
T cd06635         252 -------YFRNFVDSCLQKIPQDRPTSEELLKHM  278 (317)
T ss_pred             -------HHHHHHHHHccCCcccCcCHHHHHhCh
Confidence                   355566679999999999999998744

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.49  E-value=3.9e-14  Score=94.72  Aligned_cols=95  Identities=20%  Similarity=0.293  Sum_probs=63.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+-|+|||++  .+..|+..+|+||+||+++|++.|-+||.+.....  .-..+..|...+.     .......+.
T Consensus       347 StVGTPDYiAPEVl--l~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~tp~~--T~rkI~nwr~~l~-----fP~~~~~s~  417 (550)
T KOG0605|consen  347 STVGTPDYIAPEVL--LGKGYGKECDWWSLGCIMYEMLVGYPPFCSETPQE--TYRKIVNWRETLK-----FPEEVDLSD  417 (550)
T ss_pred             cccCCccccchHHH--hcCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH--HHHHHHHHhhhcc-----CCCcCcccH
Confidence            36899999999999  56779999999999999999999999998765532  1112222222111     111122345


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCC---HHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSS---MSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps---~~~v~~  114 (133)
                      +..+++.+       |+. ||++|..   +.||.+
T Consensus       418 eA~DLI~r-------ll~-d~~~RLG~~G~~EIK~  444 (550)
T KOG0605|consen  418 EAKDLITR-------LLC-DPENRLGSKGAEEIKK  444 (550)
T ss_pred             HHHHHHHH-------Hhc-CHHHhcCcccHHHHhc
Confidence            55555555       445 8999975   666654

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.49  E-value=8.7e-14  Score=89.23  Aligned_cols=95  Identities=16%  Similarity=0.224  Sum_probs=62.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|..||.......  ..    ......... .....+...+..
T Consensus       161 ~~g~~~y~aPE~~--~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~--~~----~~~~~~~~~-~~~~~~~~~~~~  231 (285)
T cd05630         161 RVGTVGYMAPEVV--KNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI--KR----EEVERLVKE-VQEEYSEKFSPD  231 (285)
T ss_pred             CCCCccccChHHH--cCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccc--hH----HHHHhhhhh-hhhhcCccCCHH
Confidence            4688999999998  55678899999999999999999999997542211  00    001111111 011112223333


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                             +..++..||+.||.+|++     +.+++.
T Consensus       232 -------~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         232 -------ARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             -------HHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence                   445555599999999999     788876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.49  E-value=1.5e-13  Score=89.21  Aligned_cols=45  Identities=20%  Similarity=0.197  Sum_probs=37.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||++.+ ...++.++||||+|++++++++|..||...
T Consensus       175 ~~~t~~y~aPE~~~~-~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         175 VVVTFWYRAPELLLG-ARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             ceecccccCcHHhcC-CCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence            467889999998732 245788999999999999999999998643

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.49  E-value=9.1e-14  Score=87.46  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=63.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .|+..|++||.+  ....++.++|+|++|++++++++|..|+.......          .............+...+   
T Consensus       162 ~~~~~~~~Pe~~--~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~---  226 (256)
T cd08530         162 IGTPHYMAPEVW--KGRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQD----------LRYKVQRGKYPPIPPIYS---  226 (256)
T ss_pred             cCCccccCHHHH--CCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH----------HHHHHhcCCCCCCchhhC---
Confidence            477899999998  45677889999999999999999999986542211          111112222222222222   


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                          ..+..++..||+.+|++||++.++++
T Consensus       227 ----~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         227 ----QDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             ----HHHHHHHHHHcCCCcccCCCHHHHhc
Confidence                34566666799999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.49  E-value=1.1e-13  Score=88.85  Aligned_cols=94  Identities=19%  Similarity=0.207  Sum_probs=60.8

Q ss_pred             CCccccccCccccccc---cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccc--ccC
Q 040499            4 ARGTVSYIAPEVFCRN---FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLK--RHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~---~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   78 (133)
                      ..|+..|++||++...   ...++.++|+||+|++++++++|..|+.......         .... ........  .+.
T Consensus       188 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~~~---------~~~~-~~~~~~~~~~~~~  257 (291)
T cd06639         188 SVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHPVK---------TLFK-IPRNPPPTLLHPE  257 (291)
T ss_pred             ccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcHHH---------HHHH-HhcCCCCCCCccc
Confidence            3577889999987321   1136789999999999999999999986532211         0111 11111111  111


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...       ..+..++..||+.+|++||++.++++
T Consensus       258 ~~~-------~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         258 KWC-------RSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             ccC-------HHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            112       24566677799999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.48  E-value=1e-13  Score=87.17  Aligned_cols=92  Identities=17%  Similarity=0.253  Sum_probs=63.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||..  ....++.++|+|++|++++++++|..|+.......          .............+...+. 
T Consensus       163 ~~~~~~y~~pe~~--~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  229 (258)
T cd08215         163 VVGTPYYLSPELC--QNKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLE----------LALKILKGQYPPIPSQYSS-  229 (258)
T ss_pred             eeeeecccChhHh--ccCCCCccccHHHHHHHHHHHHcCCCCCCCCcHHH----------HHHHHhcCCCCCCCCCCCH-
Confidence            3577889999987  45668889999999999999999998886442211          1111122222223333344 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++.+||+.+|++||++.+++.
T Consensus       230 ------~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         230 ------ELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             ------HHHHHHHHHcCCChhhCcCHHHHhc
Confidence                  3445555699999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.48  E-value=1.1e-13  Score=87.39  Aligned_cols=96  Identities=19%  Similarity=0.293  Sum_probs=61.9

Q ss_pred             CCccccccCccccccccC---ccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            4 ARGTVSYIAPEVFCRNFG---GISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~---~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ..|+..|++||.+  ...   .++.++|+||+|++++++++|+.|+.......        . ............  . .
T Consensus       161 ~~~~~~y~~Pe~~--~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~~~--------~-~~~~~~~~~~~~--~-~  226 (262)
T cd06613         161 FIGTPYWMAPEVA--AVERKGGYDGKCDIWALGITAIELAELQPPMFDLHPMR--------A-LFLISKSNFPPP--K-L  226 (262)
T ss_pred             ccCCccccCchhh--cccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCHHH--------H-HHHHHhccCCCc--c-c
Confidence            4577889999987  333   67889999999999999999999986532110        0 111111100000  0 0


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       .........+..++.+||+.+|.+||++++|+.
T Consensus       227 -~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         227 -KDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             -cchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence             011112234667777899999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=6.7e-14  Score=92.07  Aligned_cols=115  Identities=18%  Similarity=0.193  Sum_probs=80.1

Q ss_pred             CCCccccccCccccccc--cCccc--cccchhhhhHHHHHHHcc----------CCCCCCCCCCCCCcchhhhHHHHhhh
Q 040499            3 DARGTVSYIAPEVFCRN--FGGIS--HKSDVYGFGMTVLELVGV----------RNNTASGVTHTSSTEMYFPDWFYKLL   68 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~--~~~~~--~~~dv~s~g~~~~~l~~~----------~~p~~~~~~~~~~~~~~~~~~~~~~~   68 (133)
                      .-+||-.|||||++...  ...|.  ..+||||||.++||+..+          +.||....+.+    ..+.+......
T Consensus       379 ~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~D----Ps~eeMrkVVC  454 (513)
T KOG2052|consen  379 PRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSD----PSFEEMRKVVC  454 (513)
T ss_pred             CccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCC----CCHHHHhccee
Confidence            35799999999998321  11222  468999999999998743          35666655433    33333333333


Q ss_pred             cCCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           69 EPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      .+...+..|..+...  ..++.+.++|..||..+|+.|.++-.|.+.|.++.+..
T Consensus       455 v~~~RP~ipnrW~s~--~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l~~~~  507 (513)
T KOG2052|consen  455 VQKLRPNIPNRWKSD--PALRVMAKLMKECWYANPAARLTALRIKKTLAKLSNSD  507 (513)
T ss_pred             ecccCCCCCcccccC--HHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHHhcCh
Confidence            444455555555433  56778999999999999999999999999998887643

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.48  E-value=8.7e-14  Score=87.64  Aligned_cols=93  Identities=24%  Similarity=0.304  Sum_probs=61.8

Q ss_pred             CCccccccCccccccccCc-cccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGG-ISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~-~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|++||.+  .... ++.++|+|++|++++++++|..|+......         ...............+...+.
T Consensus       161 ~~~~~~y~~pe~~--~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  229 (258)
T cd06632         161 FKGSPYWMAPEVI--AQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEGV---------AAVFKIGRSKELPPIPDHLSD  229 (258)
T ss_pred             cCCCcceeCHHHh--cCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcHH---------HHHHHHHhcccCCCcCCCcCH
Confidence            4578889999987  3334 788999999999999999999998654311         011111111112222333344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       +..++..||+.+|++||++.+++.
T Consensus       230 ~-------~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         230 E-------AKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             H-------HHHHHHHHhhcCcccCcCHHHHhc
Confidence            3       344555599999999999999874

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.48  E-value=4.4e-14  Score=98.65  Aligned_cols=96  Identities=16%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             cccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      |+.|.+||++.. .+...+.|+|||++||++|.|+....||+..+...+         +...+    ........+.   
T Consensus       218 Tp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laI---------lng~Y----~~P~~p~ys~---  281 (738)
T KOG1989|consen  218 TPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAI---------LNGNY----SFPPFPNYSD---  281 (738)
T ss_pred             CccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeE---------Eeccc----cCCCCccHHH---
Confidence            678999999843 234678999999999999999999999987644321         11111    1111112233   


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                          .+..|+..||+.||++||++-+|+..+.++...
T Consensus       282 ----~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~  314 (738)
T KOG1989|consen  282 ----RLKDLIRTMLQPNPDERPNIYQVLEEIFELANK  314 (738)
T ss_pred             ----HHHHHHHHHhccCcccCCCHHHHHHHHHHHhcC
Confidence                344445558899999999999999888776544

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.48  E-value=1.3e-13  Score=90.06  Aligned_cols=44  Identities=27%  Similarity=0.464  Sum_probs=35.7

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ++..|++||++......++.++|+||+|++++++++|..||...
T Consensus       170 ~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~  213 (328)
T cd08226         170 SVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVPFQDM  213 (328)
T ss_pred             CccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            45569999998432245788999999999999999999998654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.48  E-value=3.3e-14  Score=93.43  Aligned_cols=92  Identities=23%  Similarity=0.241  Sum_probs=61.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC--CC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL--VT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   81 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..||.......         ..............+..  .+
T Consensus       190 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~---------~~~~i~~~~~~~~~p~~~~~~  258 (350)
T cd05573         190 TVGTPDYIAPEVL--RGTPYGLECDWWSLGVILYEMLYGFPPFYSDTLQE---------TYNKIINWKESLRFPPDPPVS  258 (350)
T ss_pred             cccCccccCHHHH--cCCCCCCceeeEecchhhhhhccCCCCCCCCCHHH---------HHHHHhccCCcccCCCCCCCC
Confidence            4689999999998  55688999999999999999999999987543211         01111110111111211  24


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCC-HHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSS-MSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps-~~~v~~  114 (133)
                      ..       +..++..|+. ||.+|++ +++++.
T Consensus       259 ~~-------~~~li~~ll~-dp~~R~~s~~~ll~  284 (350)
T cd05573         259 PE-------AIDLICRLLC-DPEDRLGSFEEIKS  284 (350)
T ss_pred             HH-------HHHHHHHHcc-ChhhcCCCHHHHhc
Confidence            43       3344445887 9999999 999986

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.48  E-value=2e-13  Score=86.49  Aligned_cols=96  Identities=18%  Similarity=0.323  Sum_probs=62.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..|+.......      .................+...+. 
T Consensus       168 ~~~~~~~~~PE~~--~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-  238 (268)
T cd06630         168 LLGTIAFMAPEVL--RGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSN------HLALIFKIASATTAPSIPEHLSP-  238 (268)
T ss_pred             cccccceeCHhHh--ccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcc------hHHHHHHHhccCCCCCCchhhCH-
Confidence            3577889999987  45677889999999999999999999885432211      00111111111111122222223 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.+|++||++.++++
T Consensus       239 ------~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         239 ------GLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             ------HHHHHHHHHcCCCcccCcCHHHHhc
Confidence                  4455666699999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.48  E-value=1e-13  Score=88.80  Aligned_cols=92  Identities=17%  Similarity=0.243  Sum_probs=61.4

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc-cccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL-KRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   83 (133)
                      .|+..|++||.+  ....++.++|+|++|++++++++|..|+.......         ............ ..+...+  
T Consensus       177 ~~~~~y~~PE~~--~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~--  243 (286)
T cd06614         177 VGTPYWMAPEVI--KRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPPLR---------ALFLITTKGIPPLKNPEKWS--  243 (286)
T ss_pred             cCCcccCCHhHh--cCCCCCCccccHHHHHHHHHHHhCCCCCCCCCHHH---------HHHHHHhcCCCCCcchhhCC--
Confidence            467889999987  45567899999999999999999999986432210         011111111110 0111122  


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                           ..+..++..||+.+|.+||++.+|+.
T Consensus       244 -----~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         244 -----PEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             -----HHHHHHHHHHhccChhhCcCHHHHhh
Confidence                 24556667799999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.48  E-value=1.2e-13  Score=88.15  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=62.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhh-----------hcCC-
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKL-----------LEPG-   71 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-   71 (133)
                      ..|+..|++||.+. ....++.++|+||+|+++++++++..||.......      ........           .... 
T Consensus       158 ~~~~~~y~aPE~~~-~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  230 (282)
T cd07831         158 YISTRWYRAPECLL-TDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELD------QIAKIHDVLGTPDAEVLKKFRKSR  230 (282)
T ss_pred             CCCCcccCChhHhh-cCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHH------HHHHHHHHcCCCCHHHHHhhcccc
Confidence            35788899999762 23456789999999999999999998886532210      00111100           0000 


Q ss_pred             -ccccccCCCChh----HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           72 -EDLKRHGLVTEE----EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        72 -~~~~~~~~~~~~----~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       .....+......    .......+..++..||+.+|++||++++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         231 HMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             cccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence             000011111100    1122345777778899999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.48  E-value=1.1e-13  Score=87.93  Aligned_cols=96  Identities=22%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ..|+..|+|||.+..   ....++.++|+|++|++++++++|..|+.......     .    .... .........   
T Consensus       173 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~-----~----~~~~-~~~~~~~~~---  239 (275)
T cd06608         173 FIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHPMR-----A----LFKI-PRNPPPTLK---  239 (275)
T ss_pred             ccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccchHH-----H----HHHh-hccCCCCCC---
Confidence            357888999998732   12356788999999999999999999986432211     0    1111 111111110   


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .  .......+..++.+||..||++||++.+|+.
T Consensus       240 ~--~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         240 S--PENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             c--hhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            0  0112234556677799999999999999875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.48  E-value=2.6e-13  Score=86.73  Aligned_cols=102  Identities=18%  Similarity=0.103  Sum_probs=63.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-----------c
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-----------D   73 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~   73 (133)
                      .++..|++||++  ....++.++|+||+|+++++++++..++.......      .............           .
T Consensus       167 ~~~~~~~~PE~~--~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  238 (287)
T cd07838         167 VVTLWYRAPEVL--LQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEAD------QLDKIFDVIGLPSEEEWPRNVSLPR  238 (287)
T ss_pred             cccccccChHHh--ccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHH------HHHHHHHHcCCCChHhcCCCcccch
Confidence            467789999998  45677889999999999999999988876432211      0000111000000           0


Q ss_pred             ccccC----CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           74 LKRHG----LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        74 ~~~~~----~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+.    ............+.+++..||+.||++||++.+++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         239 SSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             hhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence            00000    011112223345667888899999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.48  E-value=1.2e-13  Score=87.54  Aligned_cols=95  Identities=19%  Similarity=0.257  Sum_probs=60.3

Q ss_pred             CCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc-cccc--CC
Q 040499            4 ARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED-LKRH--GL   79 (133)
Q Consensus         4 ~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~   79 (133)
                      ..|+..|+|||++.. ....++.++|+||+|+++++++++..|+.......    .     .......... ....  ..
T Consensus       166 ~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~  236 (267)
T cd06645         166 FIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMR----A-----LFLMTKSNFQPPKLKDKMK  236 (267)
T ss_pred             ccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccchh----h-----HHhhhccCCCCCcccccCC
Confidence            468899999998621 13457889999999999999999998875432211    0     1100011100 0000  11


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.       .+..++..||+.+|++||++++|++
T Consensus       237 ~~~-------~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         237 WSN-------SFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             CCH-------HHHHHHHHHccCCchhCcCHHHHhc
Confidence            222       3445566699999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.48  E-value=7.5e-14  Score=85.40  Aligned_cols=93  Identities=19%  Similarity=0.317  Sum_probs=73.6

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ++.|||.-|.+||++  ....++..+|+|++|+..+|++-|.+||.......          ....+.. .....|..++
T Consensus       180 ~tlcgt~dyl~pEmv--~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~~e----------tYkrI~k-~~~~~p~~is  246 (281)
T KOG0580|consen  180 KTLCGTLDYLPPEMV--EGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSHSE----------TYKRIRK-VDLKFPSTIS  246 (281)
T ss_pred             eeeecccccCCHhhc--CCCCccchhhHHHHHHHHHHHHhcCCchhhhhhHH----------HHHHHHH-ccccCCcccC
Confidence            468999999999999  67788999999999999999999999998654221          3332222 2334467778


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...++++.+       |+.++|.+|.+..+++.
T Consensus       247 ~~a~dlI~~-------ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  247 GGAADLISR-------LLVKNPIERLALTEVMD  272 (281)
T ss_pred             hhHHHHHHH-------HhccCccccccHHHHhh
Confidence            888888777       77999999999999986

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.48  E-value=1e-13  Score=89.40  Aligned_cols=93  Identities=18%  Similarity=0.301  Sum_probs=62.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..||........         .......+. ....+...+.
T Consensus       175 ~~~~~~y~aPE~~--~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  243 (297)
T cd06656         175 MVGTPYWMAPEVV--TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA---------LYLIATNGTPELQNPERLSA  243 (297)
T ss_pred             ccCCccccCHHHH--cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcchh---------eeeeccCCCCCCCCccccCH
Confidence            3578899999988  456678899999999999999999999865432110         000011111 1111222233


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||+.+|++||++.+|+.
T Consensus       244 -------~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         244 -------VFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             -------HHHHHHHHHccCChhhCcCHHHHhc
Confidence                   3445556699999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.48  E-value=3.3e-14  Score=92.40  Aligned_cols=48  Identities=19%  Similarity=0.267  Sum_probs=43.1

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVT   51 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~   51 (133)
                      .+.||++.|||||++  ...+|+-|+|+||+|+++|++++|+.||.....
T Consensus       172 ~tlcGSplYMAPEV~--~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t~  219 (429)
T KOG0595|consen  172 ETLCGSPLYMAPEVI--MSQQYDAKADLWSIGTILYQCLTGKPPFDAETP  219 (429)
T ss_pred             HHhhCCccccCHHHH--HhccccchhhHHHHHHHHHHHHhCCCCccccCH
Confidence            367999999999999  678999999999999999999999999986543

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.47  E-value=1.4e-14  Score=98.29  Aligned_cols=101  Identities=16%  Similarity=0.214  Sum_probs=67.7

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHc--cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG--VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .+.|||+|.+  .-++++.++|+|+||+++||+++  ...||.......      ..+......... ....   .....
T Consensus       702 piRwmawEsi--llgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~e~------vven~~~~~~~~-~~~~---~l~~P  769 (807)
T KOG1094|consen  702 PIRWMAWESI--LLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTDEQ------VVENAGEFFRDQ-GRQV---VLSRP  769 (807)
T ss_pred             eeeehhHHHH--HhccccchhhhhhhHHHHHHHHHHHhhCchhhhhHHH------HHHhhhhhcCCC-Ccce---eccCC
Confidence            4789999998  66899999999999999999865  567876542211      111111111111 1111   11112


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      ..+...++++|+.||..+..+||++++|...|++.
T Consensus       770 ~~cp~~lyelml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  770 PACPQGLYELMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             CcCcHHHHHHHHHHhchhhhcCCCHHHHHHHHHHh
Confidence            23445778899999999999999999998877653

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.47  E-value=4.2e-14  Score=92.15  Aligned_cols=87  Identities=18%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++||||+|++++++++|..||.......          ....+... ....+...+..
T Consensus       156 ~~gt~~y~aPE~~--~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~----------~~~~i~~~-~~~~~~~~~~~  222 (323)
T cd05575         156 FCGTPEYLAPEVL--RKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRDTAE----------MYDNILNK-PLRLKPNISVS  222 (323)
T ss_pred             ccCChhhcChhhh--cCCCCCccccccccchhhhhhhcCCCCCCCCCHHH----------HHHHHHcC-CCCCCCCCCHH
Confidence            4689999999998  55678899999999999999999999986532211          11111111 11222333444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMS  110 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~  110 (133)
                      ..+       ++..||+.||.+||++.
T Consensus       223 ~~~-------li~~~l~~~p~~R~~~~  242 (323)
T cd05575         223 ARH-------LLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             HHH-------HHHHHhhcCHHhCCCCC
Confidence            444       44448899999999874

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.47  E-value=3.2e-13  Score=86.81  Aligned_cols=95  Identities=18%  Similarity=0.231  Sum_probs=60.4

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCC
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGL   79 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   79 (133)
                      ..|+..|++||.+..   ....++.++|+||+|+++|++++|..|+.......         .......... ....+..
T Consensus       170 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~---------~~~~~~~~~~~~~~~~~~  240 (292)
T cd06644         170 FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMR---------VLLKIAKSEPPTLSQPSK  240 (292)
T ss_pred             ecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccHHH---------HHHHHhcCCCccCCCCcc
Confidence            347788999998732   12346778999999999999999999876432210         0111111110 1111222


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.       .+..++..||+.+|++||++.+|++
T Consensus       241 ~~~-------~~~~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         241 WSM-------EFRDFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             cCH-------HHHHHHHHHhcCCcccCcCHHHHhc
Confidence            233       3445556699999999999999976

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.47  E-value=8.5e-14  Score=94.68  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=67.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      +=|..|.|||+.  ....|+..+|+||+|+++++|++|..|+.......         -+...+..+   .....++...
T Consensus       474 ~~t~~y~APEvl--~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~~---------ei~~~i~~~---~~s~~vS~~A  539 (612)
T KOG0603|consen  474 ALTLQYVAPEVL--AIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAGI---------EIHTRIQMP---KFSECVSDEA  539 (612)
T ss_pred             chhhcccChhhh--ccCCCCcchhhHHHHHHHHHHHhCCCccccCCchH---------HHHHhhcCC---ccccccCHHH
Confidence            447789999998  56789999999999999999999999987654321         023222222   2235667777


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ++++..       ||+.||.+|+++.++..
T Consensus       540 KdLl~~-------LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  540 KDLLQQ-------LLQVDPALRLGADEIGA  562 (612)
T ss_pred             HHHHHH-------hccCChhhCcChhhhcc
Confidence            777777       66999999999999875

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.47  E-value=1.3e-13  Score=87.39  Aligned_cols=92  Identities=18%  Similarity=0.221  Sum_probs=58.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|+|||.+  ....++.++|+||+|++++++++|+.|+......     .    ...........+..+...+..
T Consensus       169 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~  237 (265)
T cd06652         169 VTGTPYWMSPEVI--SGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEAM-----A----AIFKIATQPTNPVLPPHVSDH  237 (265)
T ss_pred             CCCCccccChhhh--cCCCCCcchhHHHHHHHHHHHhhCCCCCCccchH-----H----HHHHHhcCCCCCCCchhhCHH
Confidence            4578899999988  4456788999999999999999999998643111     0    011111111122222222333


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+++       ..||. +|+.||++++|+.
T Consensus       238 ~~~~i-------~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         238 CRDFL-------KRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             HHHHH-------HHHhc-ChhhCCCHHHHhc
Confidence            33333       44664 8999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.47  E-value=2.3e-13  Score=86.64  Aligned_cols=95  Identities=24%  Similarity=0.306  Sum_probs=62.5

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCCCCh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGLVTE   82 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   82 (133)
                      .++..|++||.+  ....++.++|+||+|++++++++ +..|+......      .    ......... ....+...+.
T Consensus       179 ~~~~~y~~PE~~--~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~  246 (275)
T cd05046         179 LIPLRWLAPEAV--QEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLSDE------E----VLNRLQAGKLELPVPEGCPS  246 (275)
T ss_pred             eeEEeecChhhh--ccCCCCchhhHHHHHHHHHHHHhCCCCCccccchH------H----HHHHHHcCCcCCCCCCCCCH
Confidence            345679999987  44567789999999999999998 66677532211      0    111111111 1111222333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                             .+..++.+||+.+|.+||++.+++..|.+
T Consensus       247 -------~l~~~i~~~l~~~p~~Rp~~~~~l~~l~~  275 (275)
T cd05046         247 -------RLYKLMTRCWAVNPKDRPSFSELVSALGE  275 (275)
T ss_pred             -------HHHHHHHHHcCCCcccCCCHHHHHHHhcC
Confidence                   45556666999999999999999998864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.47  E-value=1.8e-13  Score=88.83  Aligned_cols=96  Identities=21%  Similarity=0.309  Sum_probs=62.2

Q ss_pred             CCCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ...|+..|++||.+.. ....++.++|+||+|++++++++|..|+.......         ..................+
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  246 (313)
T cd06633         176 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMS---------ALYHIAQNDSPTLQSNEWT  246 (313)
T ss_pred             CccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCChHH---------HHHHHHhcCCCCCCccccC
Confidence            3468889999998731 13457889999999999999999999886542211         0111111111111111222


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       .+..++..||+.+|.+||++.+++.
T Consensus       247 ~-------~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         247 D-------SFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             H-------HHHHHHHHHccCChhhCcCHHHHhc
Confidence            2       3445666699999999999999885

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.47  E-value=5.4e-13  Score=85.55  Aligned_cols=95  Identities=17%  Similarity=0.220  Sum_probs=61.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|+|||++  ....++.++|+||+|++++++++|..||.......      ............ ....+...+. 
T Consensus       161 ~~g~~~~~aPE~~--~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~-  230 (285)
T cd05632         161 RVGTVGYMAPEVL--NNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKV------KREEVDRRVLET-EEVYSAKFSE-  230 (285)
T ss_pred             CCCCcCccChHHh--cCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHhhhcc-ccccCccCCH-
Confidence            4588999999998  45678889999999999999999999986532211      001111111111 1111222333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                            .+..++..||+.||++||+     +.+++.
T Consensus       231 ------~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         231 ------EAKSICKMLLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             ------HHHHHHHHHccCCHhHcCCCcccChHHHHc
Confidence                  2345555699999999999     667664

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.46  E-value=1.5e-13  Score=86.08  Aligned_cols=92  Identities=21%  Similarity=0.297  Sum_probs=61.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC--CC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL--VT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   81 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..|+.......         .... .........+..  .+
T Consensus       157 ~~~~~~~~~PE~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~  224 (253)
T cd05122         157 MVGTPYWMAPEVI--NGKPYDYKADIWSLGITAIELAEGKPPYSELPPMK---------ALFK-IATNGPPGLRNPEKWS  224 (253)
T ss_pred             eecCCcccCHHHH--cCCCCCccccHHHHHHHHHHHHhCCCCCCCCchHH---------HHHH-HHhcCCCCcCcccccC
Confidence            4577889999988  44567889999999999999999999886432211         0111 111111111111  12


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       .+..++.+||+.||++||++.+++.
T Consensus       225 ~-------~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         225 D-------EFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             H-------HHHHHHHHHccCChhhCCCHHHHhc
Confidence            3       3555566699999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.46  E-value=8.1e-14  Score=89.15  Aligned_cols=88  Identities=23%  Similarity=0.357  Sum_probs=70.0

Q ss_pred             CCCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         1 ~~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ++++|||+-|+|||++  ....|...+|+|.+|+++||+..|+.||.......          +...+. ......|...
T Consensus       325 ~kTFCGTPEYLAPEVl--eDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~k----------LFeLIl-~ed~kFPr~l  391 (516)
T KOG0690|consen  325 TKTFCGTPEYLAPEVL--EDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEK----------LFELIL-MEDLKFPRTL  391 (516)
T ss_pred             eccccCChhhcCchhh--ccccccceeehhhhhHHHHHHHhccCcccccchhH----------HHHHHH-hhhccCCccC
Confidence            4689999999999999  56789999999999999999999999998765443          222111 2244567778


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCC
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSS  108 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps  108 (133)
                      +++...++..++       .+||.+|..
T Consensus       392 s~eAktLLsGLL-------~kdP~kRLG  412 (516)
T KOG0690|consen  392 SPEAKTLLSGLL-------KKDPKKRLG  412 (516)
T ss_pred             CHHHHHHHHHHh-------hcChHhhcC
Confidence            888888888866       999999963

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=1.8e-14  Score=94.16  Aligned_cols=93  Identities=22%  Similarity=0.308  Sum_probs=59.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc-CCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH-GLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   81 (133)
                      ..+||..|+|||++.. ...++.++||||+|++++++++|..||.......          ....+..+.. ..+ ...+
T Consensus       155 ~~~gt~~y~aPE~~~~-~~~~~~~~DvwslGvil~elltG~~Pf~~~~~~~----------~~~~i~~~~~-~~~~~~~~  222 (330)
T cd05586         155 TFCGTTEYLAPEVLLD-EKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQ----------MYRNIAFGKV-RFPKNVLS  222 (330)
T ss_pred             CccCCccccCHHHHcC-CCCCCCccceeccccEEEEeccCCCCCCCCCHHH----------HHHHHHcCCC-CCCCccCC
Confidence            3568999999998732 2347889999999999999999999986532211          1111111111 112 2234


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCC----CHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRS----SMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rp----s~~~v~~  114 (133)
                      ....+       ++..||+.||.+||    ++.+++.
T Consensus       223 ~~~~~-------li~~~L~~~P~~R~~~~~~~~~ll~  252 (330)
T cd05586         223 DEGRQ-------FVKGLLNRNPQHRLGAHRDAVELKE  252 (330)
T ss_pred             HHHHH-------HHHHHcCCCHHHCCCCCCCHHHHhc
Confidence            44444       44458899999998    5666654

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.46  E-value=3.2e-13  Score=86.15  Aligned_cols=104  Identities=15%  Similarity=0.099  Sum_probs=63.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-----------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-----------   72 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   72 (133)
                      ..++..|++||.+.. ...++.++|+|++|++++++++|+.+|.......      ........+....           
T Consensus       158 ~~~~~~~~~PE~~~~-~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  230 (283)
T cd05118         158 YVVTRWYRAPELLLG-DKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEID------QLFKIFRTLGTPDPEVWPKFTSLA  230 (283)
T ss_pred             ccCcccccCcHHHhc-CCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHHcCCCchHhcccchhhh
Confidence            346778999998732 2367889999999999999999998875432110      0000000000000           


Q ss_pred             ---cccccCC----CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           73 ---DLKRHGL----VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        73 ---~~~~~~~----~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                         ....+..    ...........+.+++..||+.||.+||++.+++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         231 RNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             hhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence               0000000    01111223456778888899999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.46  E-value=3.2e-13  Score=86.60  Aligned_cols=103  Identities=18%  Similarity=0.178  Sum_probs=65.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..++..|++||.+  ....++.++|+|++|++++++++|+.|+........ .......+..    ....+..+.... .
T Consensus       163 ~~~~~~y~~pE~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~-~  234 (287)
T cd06621         163 FTGTSFYMAPERI--QGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEPPL-GPIELLSYIV----NMPNPELKDEPG-N  234 (287)
T ss_pred             ccCCccccCHHHh--cCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCCCC-ChHHHHHHHh----cCCchhhccCCC-C
Confidence            3467889999988  456788899999999999999999999875532110 1111112211    111111111111 0


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .......+..++..||+.+|++||++.+|+.
T Consensus       235 ~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         235 GIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             CCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence            0012234667778899999999999999987

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.46  E-value=8.3e-14  Score=87.26  Aligned_cols=98  Identities=17%  Similarity=0.225  Sum_probs=71.7

Q ss_pred             cccccCccccccccCc-cccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHH
Q 040499            7 TVSYIAPEVFCRNFGG-ISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEE   85 (133)
Q Consensus         7 t~~~~ape~~~~~~~~-~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (133)
                      .+.||+||.++..-.. .-..+|+|||++++||+.++.-||........         ......++....+|..++..  
T Consensus       349 ~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmec---------gmkialeglrv~ippgis~h--  417 (448)
T KOG0195|consen  349 SPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMEC---------GMKIALEGLRVHIPPGISRH--  417 (448)
T ss_pred             CcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhh---------hhhhhhccccccCCCCccHH--
Confidence            5789999998432222 23579999999999999999999976544221         23344556666667666653  


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           86 VIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        86 ~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                           +.+||.-|++.||.+||.+..|+-.|+++.
T Consensus       418 -----m~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  418 -----MNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             -----HHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence                 444555599999999999999999998864

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.46  E-value=1.4e-13  Score=87.87  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=61.2

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--cccC
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--KRHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   78 (133)
                      ..|+..|++||.+..   ....++.++|+||+|++++++++|..|+.......          ..........+  ..+.
T Consensus       163 ~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~  232 (280)
T cd06611         163 FIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNPMR----------VLLKILKSEPPTLDQPS  232 (280)
T ss_pred             eecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCHHH----------HHHHHhcCCCCCcCCcc
Confidence            357889999998731   12346778999999999999999999986532211          11111111111  1122


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+..       +..++..||+.+|++||++.+|++
T Consensus       233 ~~~~~-------~~~li~~~l~~~p~~Rps~~~il~  261 (280)
T cd06611         233 KWSSS-------FNDFLKSCLVKDPDDRPTAAELLK  261 (280)
T ss_pred             cCCHH-------HHHHHHHHhccChhhCcCHHHHhc
Confidence            23333       444555699999999999999976

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.46  E-value=1.9e-13  Score=88.02  Aligned_cols=93  Identities=18%  Similarity=0.289  Sum_probs=61.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc-ccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED-LKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..||........         .......+.. ...+...+.
T Consensus       175 ~~~~~~y~~PE~~--~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  243 (293)
T cd06647         175 MVGTPYWMAPEVV--TRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRA---------LYLIATNGTPELQNPEKLSA  243 (293)
T ss_pred             ccCChhhcCchhh--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChhhh---------eeehhcCCCCCCCCccccCH
Confidence            3577889999988  455678899999999999999999999865432110         0000001100 001111222


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||+.+|++||++.+++.
T Consensus       244 -------~l~~li~~~l~~~p~~Rp~~~~il~  268 (293)
T cd06647         244 -------IFRDFLNRCLEMDVEKRGSAKELLQ  268 (293)
T ss_pred             -------HHHHHHHHHccCChhhCcCHHHHhc
Confidence                   3445666799999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.46  E-value=7.6e-14  Score=90.16  Aligned_cols=45  Identities=20%  Similarity=0.208  Sum_probs=37.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||++.+ ...++.++|+||+|++++++++|..||...
T Consensus       163 ~~~~~~y~aPE~~~~-~~~~~~~~DiwslG~il~~l~~g~~pf~~~  207 (303)
T cd07869         163 EVVTLWYRPPDVLLG-STEYSTCLDMWGVGCIFVEMIQGVAAFPGM  207 (303)
T ss_pred             CcccCCCCChHHHcC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            457889999998732 245788999999999999999999998754

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.46  E-value=3.2e-13  Score=85.87  Aligned_cols=95  Identities=14%  Similarity=0.147  Sum_probs=61.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|+|||++  ....++.++|+||+|++++++++|..|+.......    .....+... .  ......+...+..
T Consensus       166 ~~~~~~y~aPE~~--~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~~~~~  236 (267)
T PHA03390        166 YDGTLDYFSPEKI--KGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE----LDLESLLKR-Q--QKKLPFIKNVSKN  236 (267)
T ss_pred             CCCCCcccChhhh--cCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch----hhHHHHHHh-h--cccCCcccccCHH
Confidence            4578899999998  45678889999999999999999999987432211    111111111 1  1111122234444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC-HHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS-MSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps-~~~v~~  114 (133)
                      ..       .++..||+.+|.+|++ ++++++
T Consensus       237 ~~-------~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        237 AN-------DFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             HH-------HHHHHHhccChhhCCchHHHHhc
Confidence            44       4444588999999996 688873

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.46  E-value=2.8e-13  Score=87.77  Aligned_cols=43  Identities=26%  Similarity=0.413  Sum_probs=37.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..|+..|++||.+  .+..++.++|+||+|++++++++|..|+..
T Consensus       158 ~~~~~~~~aPE~~--~~~~~~~~~DiwslG~~l~~l~~g~~p~~~  200 (308)
T cd06615         158 FVGTRSYMSPERL--QGTHYTVQSDIWSLGLSLVEMAIGRYPIPP  200 (308)
T ss_pred             CCCCcCccChhHh--cCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence            4678899999987  455688899999999999999999998754

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.46  E-value=1.4e-13  Score=92.65  Aligned_cols=102  Identities=17%  Similarity=0.281  Sum_probs=75.5

Q ss_pred             CCCCCccccccCccccccccCccc-cccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC
Q 040499            1 MLDARGTVSYIAPEVFCRNFGGIS-HKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL   79 (133)
Q Consensus         1 ~~~~~gt~~~~ape~~~~~~~~~~-~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (133)
                      +++.||+..|-|||++  .+..|+ ..+||||+|+++|.++.|+.||+..+...          ....+- .+...+|..
T Consensus       175 L~TsCGSLAYSAPEIL--LGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSE----------TLTmIm-DCKYtvPsh  241 (864)
T KOG4717|consen  175 LTTSCGSLAYSAPEIL--LGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSE----------TLTMIM-DCKYTVPSH  241 (864)
T ss_pred             hhcccchhhccCchhh--hcCccCCcchhhhHHHHHHHHHHhCCCccccccchh----------hhhhhh-cccccCchh
Confidence            3678999999999998  455665 67999999999999999999998765432          111111 223345666


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccC
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEA  122 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~  122 (133)
                      .+.++.+++..       ++..||.+|.+.++|..  +|+..-..
T Consensus       242 vS~eCrdLI~s-------MLvRdPkkRAslEeI~s~~Wlq~~D~~  279 (864)
T KOG4717|consen  242 VSKECRDLIQS-------MLVRDPKKRASLEEIVSTSWLQAGDRG  279 (864)
T ss_pred             hhHHHHHHHHH-------HHhcCchhhccHHHHhccccccCCCCC
Confidence            67777777777       55999999999999975  66655444

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.45  E-value=1.9e-13  Score=86.39  Aligned_cols=95  Identities=19%  Similarity=0.234  Sum_probs=63.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC-CCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL-VTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..|+......   ....    .............+.. .+.
T Consensus       160 ~~~~~~y~~pE~~--~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~  230 (264)
T cd06623         160 FVGTVTYMSPERI--QGESYSYAADIWSLGLTLLECALGKFPFLPPGQP---SFFE----LMQAICDGPPPSLPAEEFSP  230 (264)
T ss_pred             eeecccccCHhhh--CCCCCCchhhHHHHHHHHHHHHhCCCCCcccccc---CHHH----HHHHHhcCCCCCCCcccCCH
Confidence            3577889999988  4557788999999999999999999998655321   0111    1111112222222222 344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||+.+|++||++.+++.
T Consensus       231 -------~l~~li~~~l~~~p~~R~~~~~ll~  255 (264)
T cd06623         231 -------EFRDFISACLQKDPKKRPSAAELLQ  255 (264)
T ss_pred             -------HHHHHHHHHccCChhhCCCHHHHHh
Confidence                   3444555599999999999999986

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.45  E-value=8.3e-14  Score=92.09  Aligned_cols=92  Identities=17%  Similarity=0.269  Sum_probs=63.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +-+||++|||||++  ..+.|+...|+|++||++|||+.|..||.......-.++      +.+.+.+ .....++..++
T Consensus       345 ~rvGT~GYMAPEvl--~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eE------vdrr~~~-~~~ey~~kFS~  415 (591)
T KOG0986|consen  345 GRVGTVGYMAPEVL--QNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREE------VDRRTLE-DPEEYSDKFSE  415 (591)
T ss_pred             cccCcccccCHHHH--cCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHH------HHHHHhc-chhhcccccCH
Confidence            45899999999999  566799999999999999999999999975443221011      1111111 12223455566


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMS  110 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~  110 (133)
                      ...++.+.++       ++||++|..+.
T Consensus       416 eakslc~~LL-------~Kdp~~RLGcr  436 (591)
T KOG0986|consen  416 EAKSLCEGLL-------TKDPEKRLGCR  436 (591)
T ss_pred             HHHHHHHHHH-------ccCHHHhccCC
Confidence            6666655544       99999998765

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.45  E-value=1.2e-13  Score=90.54  Aligned_cols=119  Identities=15%  Similarity=0.069  Sum_probs=67.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhH----------H-------HHh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPD----------W-------FYK   66 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~----------~-------~~~   66 (133)
                      ..|+..|++||.+.. ...++.++|+||+|++++++++|..||.......   ......          +       ...
T Consensus       168 ~~~~~~y~aPE~~~~-~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (337)
T cd07858         168 YVVTRWYRAPELLLN-CSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVH---QLKLITELLGSPSEEDLGFIRNEKARR  243 (337)
T ss_pred             cccccCccChHHHhc-CCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHH---HHHHHHHHhCCCChHHhhhcCchhhhH
Confidence            457888999998732 2357889999999999999999999886432100   000000          0       000


Q ss_pred             hhcCCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCCCCCC
Q 040499           67 LLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEALQVPP  127 (133)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~~~~~  127 (133)
                      ......... ..............+..++..||+.+|++||++++++.  .++........+.
T Consensus       244 ~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~~~~~  305 (337)
T cd07858         244 YIRSLPYTP-RQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPSDEPV  305 (337)
T ss_pred             HHHhcCccc-ccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCcccCcc
Confidence            000000000 00000001112334567777799999999999999986  3665544443333

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.45  E-value=1.6e-13  Score=90.09  Aligned_cols=44  Identities=16%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .|+..|+|||.+. ....++.++|+||+|++++++++|..||...
T Consensus       179 ~~~~~y~aPE~~~-~~~~~~~~~DiwSlGvil~el~~g~~pf~~~  222 (342)
T cd07854         179 LVTKWYRSPRLLL-SPNNYTKAIDMWAAGCIFAEMLTGKPLFAGA  222 (342)
T ss_pred             cccccccCHHHHh-CccccCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            4678899999863 2345778999999999999999999998644

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.45  E-value=1.4e-13  Score=90.08  Aligned_cols=117  Identities=14%  Similarity=0.056  Sum_probs=66.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCc----------chhhhH----HHHhhhc
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSST----------EMYFPD----WFYKLLE   69 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~----------~~~~~~----~~~~~~~   69 (133)
                      +.||..|++||.+.. ...++.++|+||+|++++++++|..|+..........          ......    .....+.
T Consensus       172 ~~~~~~y~aPE~~~~-~~~~~~~sDi~slG~~l~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (337)
T cd07852         172 YVATRWYRAPEILLG-STRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLD  250 (337)
T ss_pred             ccccccccCceeeec-cccccccchHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhh
Confidence            457889999998732 3456789999999999999999999885432110000          000000    0000000


Q ss_pred             CCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccC
Q 040499           70 PGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEA  122 (133)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~  122 (133)
                      ...... ..............+..++..||+.||++||++.+++.  .+++..+.
T Consensus       251 ~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~~~~  304 (337)
T cd07852         251 SLPSRP-RKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQFHNP  304 (337)
T ss_pred             hccccc-ccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhhccC
Confidence            000000 00000001112234666777799999999999999986  45555444

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.45  E-value=2.2e-13  Score=87.15  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             CCccccccCccccccccC-ccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFG-GISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~-~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..|+..|++||++  ... .++.++|+||+|++++++++|..++...
T Consensus       161 ~~~~~~~~~PE~~--~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~  205 (288)
T cd07833         161 YVATRWYRAPELL--VGDTNYGKPVDVWAIGCIMAELLDGEPLFPGD  205 (288)
T ss_pred             cccccCCcCCchh--cCCCCcCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            4577889999998  344 6788999999999999999999888643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.45  E-value=2.2e-13  Score=87.42  Aligned_cols=45  Identities=22%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||.+.+ ...++.++|+||+|++++++++|..||...
T Consensus       163 ~~~~~~y~aPE~~~~-~~~~~~~~DiwslG~~l~~l~~g~~pf~~~  207 (288)
T cd07871         163 EVVTLWYRPPDVLLG-STEYSTPIDMWGVGCILYEMATGRPMFPGS  207 (288)
T ss_pred             ceecccccChHHhcC-CcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            457889999998732 246788999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.45  E-value=1e-12  Score=85.82  Aligned_cols=111  Identities=14%  Similarity=0.062  Sum_probs=66.6

Q ss_pred             CCccccccCccccccccC-ccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc----------
Q 040499            4 ARGTVSYIAPEVFCRNFG-GISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE----------   72 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~-~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   72 (133)
                      ..|+..|++||.+.  .. .++.++|+||+|++++++++|..||.......      ....+........          
T Consensus       166 ~~~~~~y~aPE~~~--~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~  237 (330)
T cd07834         166 YVVTRWYRAPELLL--SSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYID------QLNLIVEVLGTPSEEDLKFITSE  237 (330)
T ss_pred             cccccCcCCceeee--cccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHH------HHHHHHHhcCCCChhHhhhcccc
Confidence            45788899999983  34 67889999999999999999999986543210      0000000000000          


Q ss_pred             ---------cccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccC
Q 040499           73 ---------DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEA  122 (133)
Q Consensus        73 ---------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~  122 (133)
                               ..................+..++.+||+.+|++||++.+++.  .+++....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~~  298 (330)
T cd07834         238 KARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHDP  298 (330)
T ss_pred             chhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhccc
Confidence                     000000000000112234566777799999999999999987  46555443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.45  E-value=4.4e-13  Score=85.61  Aligned_cols=95  Identities=23%  Similarity=0.282  Sum_probs=61.3

Q ss_pred             CCccccccCcccccc--ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc-CCC
Q 040499            4 ARGTVSYIAPEVFCR--NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH-GLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~--~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   80 (133)
                      ..|+..|++||.+..  ....++.++|+|++|++++++++|..|+.......        ........ ...+..+ ...
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~  233 (283)
T cd06617         163 DAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPF--------QQLKQVVE-EPSPQLPAEKF  233 (283)
T ss_pred             ccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCH--------HHHHHHHh-cCCCCCCcccc
Confidence            457888999998732  11356789999999999999999999985422110        00111111 1111111 122


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.       .+..++..||..+|++||++.+|+.
T Consensus       234 ~~-------~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         234 SP-------EFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             CH-------HHHHHHHHHccCChhhCcCHHHHhc
Confidence            33       3555666699999999999999986

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.45  E-value=6.5e-14  Score=90.49  Aligned_cols=110  Identities=16%  Similarity=0.095  Sum_probs=62.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCc----------chhhhHHHHhhhcC--C
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSST----------EMYFPDWFYKLLEP--G   71 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~----------~~~~~~~~~~~~~~--~   71 (133)
                      ..|+..|+|||.+.+ ...++.++|+||+|++++++++|+.|+..........          ...+..+.......  .
T Consensus       186 ~~~~~~y~aPE~~~~-~~~~~~~~Dv~slG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (311)
T cd07866         186 LVVTRWYRPPELLLG-ERRYTTAVDIWGIGCVFAEMFTRRPILQGKSDIDQLHLIFKLCGTPTEETWPGWRSLPGCEGVH  264 (311)
T ss_pred             ceeccCcCChHHhhC-CCccCchhHhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhchhhhhcccccccc
Confidence            356788999998732 3357889999999999999999998886433211000          00000000000000  0


Q ss_pred             ccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           72 EDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .....+.............+.+++..||+.||.+||++.+++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~  307 (311)
T cd07866         265 SFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKRLTASDALE  307 (311)
T ss_pred             cCCCCCccHHHHcccCChhHHHHHHHHcccCcccCcCHHHHhc
Confidence            0000000000111122245677788899999999999998874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.44  E-value=1.1e-12  Score=85.82  Aligned_cols=120  Identities=15%  Similarity=0.113  Sum_probs=67.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCC---------cchhhh-----HHHHhhh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSS---------TEMYFP-----DWFYKLL   68 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~---------~~~~~~-----~~~~~~~   68 (133)
                      ...|+..|++||.+.. ...++.++|+||+|++++++++|..||.........         ......     .......
T Consensus       170 ~~~~~~~y~~PE~~~~-~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  248 (334)
T cd07855         170 EYVATRWYRAPELLLS-LPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYI  248 (334)
T ss_pred             cccccccccChHHhcC-CcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhhhhhchhhHHHHH
Confidence            3468889999998732 245788999999999999999999998654321000         000000     0000000


Q ss_pred             cCCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCCC
Q 040499           69 EPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEALQ  124 (133)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~~  124 (133)
                      . ......+.............+..++..||+.+|.+||++++++.  .+++......
T Consensus       249 ~-~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~~~  305 (334)
T cd07855         249 Q-NLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDPDD  305 (334)
T ss_pred             h-hcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCCcc
Confidence            0 00000000000001112334566667799999999999999886  5555554433

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.44  E-value=3.3e-13  Score=97.03  Aligned_cols=102  Identities=16%  Similarity=0.232  Sum_probs=66.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||+.|+|||.+  .+..++.++||||+|++++++++|..||........    .    .................+. 
T Consensus       191 ~vGT~~YmAPE~l--~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~ki----~----~~~~i~~P~~~~p~~~iP~-  259 (932)
T PRK13184        191 IVGTPDYMAPERL--LGVPASESTDIYALGVILYQMLTLSFPYRRKKGRKI----S----YRDVILSPIEVAPYREIPP-  259 (932)
T ss_pred             CCCCCCCCCHHHh--cCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhhh----h----hhhhccChhhccccccCCH-
Confidence            4699999999998  556788999999999999999999999865322110    0    0011111000000111222 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-CHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-SMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-s~~~v~~~l~~~~~~  122 (133)
                            .+..++..||+.||++|+ +++++...|+...+.
T Consensus       260 ------~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~  293 (932)
T PRK13184        260 ------FLSQIAMKALAVDPAERYSSVQELKQDLEPHLQG  293 (932)
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence                  344566669999999996 566777777766554

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.44  E-value=4.5e-13  Score=88.93  Aligned_cols=46  Identities=24%  Similarity=0.262  Sum_probs=37.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      ..||..|+|||.+.+ ...++.++||||+|++++++++|+.||....
T Consensus       164 ~~~~~~y~aPE~~~~-~~~~~~~~DiwslG~il~el~~g~~pf~~~~  209 (372)
T cd07853         164 EVVTQYYRAPEILMG-SRHYTSAVDIWSVGCIFAELLGRRILFQAQS  209 (372)
T ss_pred             CCcCCCcCCHHHHcC-CCCCCcHHHHHhHHHHHHHHHcCCCCCCCCC
Confidence            457889999998732 2357889999999999999999999987543

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.44  E-value=9.8e-13  Score=83.62  Aligned_cols=97  Identities=15%  Similarity=0.241  Sum_probs=57.9

Q ss_pred             CCccccccCccccccc-----cCccccccchhhhhHHHHHHHcc-CCCCCCCCCCCCCcchhhhHHHHhhhcCCc----c
Q 040499            4 ARGTVSYIAPEVFCRN-----FGGISHKSDVYGFGMTVLELVGV-RNNTASGVTHTSSTEMYFPDWFYKLLEPGE----D   73 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~-----~~~~~~~~dv~s~g~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~   73 (133)
                      ..|+..|++||++...     ...++.++|+||+|+++++++++ ..|+......         ...........    .
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~---------~~~~~~~~~~~~~~~~  231 (268)
T cd05086         161 KCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSDR---------EVLNHVIKDQQVKLFK  231 (268)
T ss_pred             CcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCHH---------HHHHHHHhhcccccCC
Confidence            3577889999987321     12456789999999999999874 5566432211         01111111111    1


Q ss_pred             ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           74 LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                      +......++       .+..++..|| .+|++||++++|++.|.
T Consensus       232 ~~~~~~~~~-------~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         232 PQLELPYSE-------RWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             CccCCCCcH-------HHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            111111222       3344555699 57999999999998774

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.44  E-value=3e-14  Score=92.63  Aligned_cols=88  Identities=23%  Similarity=0.315  Sum_probs=59.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|++||.+  ....++.++|+||+|++++++++|+.||......      ..   .......  ....+...+..
T Consensus       158 ~~g~~~y~aPE~~--~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~------~~---~~~i~~~--~~~~p~~~~~~  224 (318)
T cd05582         158 FCGTVEYMAPEVV--NRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRK------ET---MTMILKA--KLGMPQFLSPE  224 (318)
T ss_pred             ccCChhhcCHHHH--cCCCCCCccceeccceEeeeeccCCCCCCCCCHH------HH---HHHHHcC--CCCCCCCCCHH
Confidence            4689999999998  4567788999999999999999999998653211      11   1111111  11223334444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSK  111 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~  111 (133)
                      ..       .++..||+.||.+||++.+
T Consensus       225 ~~-------~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         225 AQ-------SLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             HH-------HHHHHHhhcCHhHcCCCCC
Confidence            33       4445599999999999433

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.44  E-value=2e-13  Score=90.59  Aligned_cols=96  Identities=16%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             CCCccccccCccccccc--cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC--
Q 040499            3 DARGTVSYIAPEVFCRN--FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG--   78 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~--~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   78 (133)
                      ..+||+.|+|||++...  ...++.++|+||+|++++++++|..||.......         ..............+.  
T Consensus       202 ~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~---------~~~~i~~~~~~~~~~~~~  272 (370)
T cd05596         202 TAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVG---------TYSKIMDHKNSLTFPDDI  272 (370)
T ss_pred             CCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCHHH---------HHHHHHcCCCcCCCCCcC
Confidence            35699999999987321  2247889999999999999999999987543211         0111111111122222  


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCC--CCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSD--RSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~--Rps~~~v~~  114 (133)
                      ..+....+++.       .|++.+|.+  |+++.++++
T Consensus       273 ~~s~~~~~li~-------~~L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         273 EISKQAKDLIC-------AFLTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             CCCHHHHHHHH-------HHccChhhccCCCCHHHHhc
Confidence            23444444444       477888887  999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.44  E-value=1.8e-13  Score=90.70  Aligned_cols=94  Identities=19%  Similarity=0.297  Sum_probs=68.8

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc-cc--ccC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED-LK--RHG   78 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~   78 (133)
                      .+.+||+.|+|||++  ....|+..+|+||.|++++-|+.|..||.+.....          ....+..+.. ..  .-.
T Consensus       196 ~~~~Gtp~y~APEvl--~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~----------~~~~i~~~~~~f~~~~w~  263 (382)
T KOG0032|consen  196 HTIVGTPEYVAPEVL--GGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFE----------IFLAILRGDFDFTSEPWD  263 (382)
T ss_pred             eeecCCccccCchhh--cCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhH----------HHHHHHcCCCCCCCCCcc
Confidence            467899999999998  55789999999999999999999999998764322          1111111111 11  112


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+....++++.       ++..||..|+++.++++
T Consensus       264 ~is~~akd~i~~-------ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  264 DISESAKDFIRK-------LLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             ccCHHHHHHHHH-------hcccCcccCCCHHHHhc
Confidence            345666666666       66999999999999998

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.44  E-value=1.8e-13  Score=90.00  Aligned_cols=88  Identities=17%  Similarity=0.334  Sum_probs=64.7

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      .+++||+-|+|||++  ....|...+|+|++|++++|++.|++||++.....          +.+.+.+- ....|...+
T Consensus       508 kTFCGTPdYiAPEIi--~YqPYgksvDWWa~GVLLyEmlaGQpPFdGeDE~e----------lF~aI~eh-nvsyPKslS  574 (683)
T KOG0696|consen  508 KTFCGTPDYIAPEII--AYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDEDE----------LFQAIMEH-NVSYPKSLS  574 (683)
T ss_pred             eeecCCCcccccceE--EecccccchhHHHHHHHHHHHHcCCCCCCCCCHHH----------HHHHHHHc-cCcCccccc
Confidence            368999999999999  78899999999999999999999999998765432          22211111 112355566


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                      .+..+..+.++       .+.|.+|..+
T Consensus       575 kEAv~ickg~l-------tK~P~kRLGc  595 (683)
T KOG0696|consen  575 KEAVAICKGLL-------TKHPGKRLGC  595 (683)
T ss_pred             HHHHHHHHHHh-------hcCCccccCC
Confidence            66666666654       8889998754

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.44  E-value=4.9e-13  Score=86.46  Aligned_cols=96  Identities=20%  Similarity=0.225  Sum_probs=60.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC-ccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG-EDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   82 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..||.+.....         ......... ..+......+.
T Consensus       176 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  244 (305)
T cd05609         176 VCGTPEYIAPEVI--LRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEE---------LFGQVISDDIEWPEGDEALPA  244 (305)
T ss_pred             CccCccccCchhc--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH---------HHHHHHhcccCCCCccccCCH
Confidence            3567889999987  45678899999999999999999999986432110         111111111 11111112233


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                      .       +..++..||+.||++||++..+.+.|+
T Consensus       245 ~-------~~~li~~~l~~~P~~R~~~~~~~~ll~  272 (305)
T cd05609         245 D-------AQDLISRLLRQNPLERLGTGGAFEVKQ  272 (305)
T ss_pred             H-------HHHHHHHHhccChhhccCccCHHHHHh
Confidence            3       445555599999999999655544444

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.44  E-value=9.3e-14  Score=90.45  Aligned_cols=87  Identities=18%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+... ....+...+..
T Consensus       156 ~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~----------~~~~i~~~-~~~~~~~~~~~  222 (321)
T cd05603         156 FCGTPEYLAPEVL--RKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQ----------MYDNILHK-PLQLPGGKTVA  222 (321)
T ss_pred             ccCCcccCCHHHh--cCCCCCCcCcccccchhhhhhhcCCCCCCCCCHHH----------HHHHHhcC-CCCCCCCCCHH
Confidence            5689999999998  45678889999999999999999999986542111          11111111 12223333443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMS  110 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~  110 (133)
                             +..++..||+.||.+|++..
T Consensus       223 -------~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         223 -------ACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             -------HHHHHHHHccCCHhhcCCCC
Confidence                   34445558899999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.44  E-value=2.1e-13  Score=88.93  Aligned_cols=86  Identities=16%  Similarity=0.296  Sum_probs=58.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++|..||.......          ....+... ....+...+..
T Consensus       161 ~~gt~~y~aPE~~--~~~~~~~~~DiwslGvil~elltG~~pf~~~~~~~----------~~~~i~~~-~~~~p~~~~~~  227 (323)
T cd05615         161 FCGTPDYIAPEII--AYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDEDE----------LFQSIMEH-NVSYPKSLSKE  227 (323)
T ss_pred             ccCCccccCHHHH--cCCCCCCccchhhhHHHHHHHHhCCCCCCCCCHHH----------HHHHHHhC-CCCCCccCCHH
Confidence            4589999999998  45678899999999999999999999987542211          11111111 11223333443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                             +..++..||+.+|.+|++.
T Consensus       228 -------~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         228 -------AVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             -------HHHHHHHHcccCHhhCCCC
Confidence                   3445555899999999974

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.44  E-value=4.3e-14  Score=92.20  Aligned_cols=87  Identities=15%  Similarity=0.078  Sum_probs=58.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++||||+|++++++++|..||.......          ....+.... ...+...+..
T Consensus       156 ~~gt~~y~aPE~~--~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~~~----------~~~~~~~~~-~~~~~~~~~~  222 (325)
T cd05604         156 FCGTPEYLAPEVI--RKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAE----------MYDNILHKP-LVLRPGASLT  222 (325)
T ss_pred             ccCChhhCCHHHH--cCCCCCCcCccccccceehhhhcCCCCCCCCCHHH----------HHHHHHcCC-ccCCCCCCHH
Confidence            5689999999998  55678899999999999999999999986532211          111111111 1112223443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMS  110 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~  110 (133)
                      ..       .++..|++.+|.+||++.
T Consensus       223 ~~-------~ll~~ll~~~p~~R~~~~  242 (325)
T cd05604         223 AW-------SILEELLEKDRQRRLGAK  242 (325)
T ss_pred             HH-------HHHHHHhccCHHhcCCCC
Confidence            33       444458899999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.44  E-value=8.4e-13  Score=85.03  Aligned_cols=96  Identities=16%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             CccccccCcccccccc--CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            5 RGTVSYIAPEVFCRNF--GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~--~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      .|+..|+|||.+....  ..++.++|+||+|++++++++|+.|+......     .   .......... ....+...  
T Consensus       175 ~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~---~~~~~~~~~~-~~~~~~~~--  243 (296)
T cd06618         175 AGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE-----F---EVLTKILQEE-PPSLPPNE--  243 (296)
T ss_pred             CCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH-----H---HHHHHHhcCC-CCCCCCCC--
Confidence            3667899999883221  34778999999999999999999998642111     0   0011111111 11111110  


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                         .....+..++..||+.||++||++.+++.
T Consensus       244 ---~~~~~l~~li~~~l~~~p~~Rp~~~~il~  272 (296)
T cd06618         244 ---GFSPDFCSFVDLCLTKDHRKRPKYRELLQ  272 (296)
T ss_pred             ---CCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence               11224556666799999999999999975

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.43  E-value=2.2e-13  Score=87.14  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=35.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..++..|+|||++.+ ...++.++|+||+|++++++++|..|+..
T Consensus       159 ~~~~~~y~aPE~~~~-~~~~~~~~DiwslG~il~~l~tg~~p~~~  202 (284)
T cd07839         159 EVVTLWYRPPDVLFG-AKLYSTSIDMWSAGCIFAELANAGRPLFP  202 (284)
T ss_pred             CccccCCcChHHHhC-CcccCcHHHHHHHHHHHHHHHhcCCCCcC
Confidence            356788999998732 23468899999999999999998888643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.43  E-value=1.3e-13  Score=88.17  Aligned_cols=44  Identities=23%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .|+..|+|||++.+ ...++.++|+||+|++++++++|+.|+...
T Consensus       162 ~~~~~y~aPE~~~~-~~~~~~~~Dv~slG~il~~l~tg~~~~~~~  205 (285)
T cd07861         162 VVTLWYRAPEVLLG-SPRYSTPVDIWSIGTIFAEMATKKPLFHGD  205 (285)
T ss_pred             cccccccChHHhcC-CCCcCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            46788999998732 235678999999999999999999988653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.43  E-value=2.8e-13  Score=86.00  Aligned_cols=99  Identities=15%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             ccccccCcccccc-----ccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC
Q 040499            6 GTVSYIAPEVFCR-----NFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL   79 (133)
Q Consensus         6 gt~~~~ape~~~~-----~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (133)
                      ++..|+|||++..     ....++.++|+||+|++++++++ +..||......      ..   ................
T Consensus       164 ~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~~------~~---~~~~~~~~~~~~~~~~  234 (269)
T cd05042         164 VPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSDE------QV---LKQVVREQDIKLPKPQ  234 (269)
T ss_pred             CcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCHH------HH---HHHHhhccCccCCCCc
Confidence            4567999998732     12356789999999999999998 66676543211      00   1111111111000011


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                      ....   ....+..++..|| .||++||++++|+..|.
T Consensus       235 ~~~~---~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         235 LDLK---YSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             cccc---CCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            1111   1123334555588 49999999999998763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.43  E-value=9.5e-13  Score=82.73  Aligned_cols=94  Identities=21%  Similarity=0.314  Sum_probs=63.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..++..|++||..  .....+.++|+|++|++++++++|..|+......        ................+...+. 
T Consensus       163 ~~~~~~y~~pE~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~-  231 (260)
T cd06606         163 VRGTPYWMAPEVI--RGEEYGRAADIWSLGCTVIEMATGKPPWSELGNP--------MAALYKIGSSGEPPEIPEHLSE-  231 (260)
T ss_pred             CCCCccccCHhhh--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch--------HHHHHhccccCCCcCCCcccCH-
Confidence            3577889999988  4456889999999999999999999998754311        0111111111122222333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++.+|++.||++||++.+++.
T Consensus       232 ------~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         232 ------EAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             ------HHHHHHHHhCcCChhhCCCHHHHhh
Confidence                  4555556699999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.43  E-value=6.1e-13  Score=86.16  Aligned_cols=112  Identities=15%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC------------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG------------   71 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------   71 (133)
                      ..||..|+|||.+.+ ...++.++|+||+|++++++++|+.||........      ...........            
T Consensus       164 ~~~~~~y~aPE~~~~-~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  236 (309)
T cd07872         164 EVVTLWYRPPDVLLG-SSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVEDE------LHLIFRLLGTPTEETWPGISSND  236 (309)
T ss_pred             ccccccccCCHHHhC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHH------HHHHHHHhCCCCHHHHhhhcchh
Confidence            357889999998732 34578899999999999999999999865432110      00000000000            


Q ss_pred             --ccccccCCCC----hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccC
Q 040499           72 --EDLKRHGLVT----EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEA  122 (133)
Q Consensus        72 --~~~~~~~~~~----~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~  122 (133)
                        .....+....    .........+.+++..|++.||.+|+++.+++.  .++.....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~~~  295 (309)
T cd07872         237 EFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLGTR  295 (309)
T ss_pred             hhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhhcccc
Confidence              0000000000    000011123445666699999999999999986  66665544

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.43  E-value=5.4e-13  Score=91.68  Aligned_cols=41  Identities=22%  Similarity=0.390  Sum_probs=35.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNT   46 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~   46 (133)
                      .+||..|++||++  .+..++.++||||+|++++|++++..++
T Consensus       328 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvil~ell~~~~~p  368 (501)
T PHA03210        328 WVGTVATNSPEIL--AGDGYCEITDIWSCGLILLDMLSHDFCP  368 (501)
T ss_pred             ccCCcCCCCchhh--cCCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence            5799999999998  5567899999999999999999876543

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.42  E-value=3.3e-13  Score=86.85  Aligned_cols=96  Identities=16%  Similarity=0.315  Sum_probs=72.7

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ++++||+.|.|||++  .+..|...+|+|++|++++|+..|+.||+-.....  .+....+++.+.+.+. ...+|...+
T Consensus       409 stfcgtpnyiapeil--rgeeygfsvdwwalgvlmfemmagrspfdivgm~n--~d~ntedylfqvilek-qiriprsls  483 (593)
T KOG0695|consen  409 STFCGTPNYIAPEIL--RGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDN--PDMNTEDYLFQVILEK-QIRIPRSLS  483 (593)
T ss_pred             ccccCCCcccchhhh--cccccCceehHHHHHHHHHHHHcCCCCcceecCCC--cccchhHHHHHHHhhh-cccccceee
Confidence            579999999999999  66799999999999999999999999998765443  2333444454444333 334567677


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSM  109 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~  109 (133)
                      -.....++.++       ++||.+|..+
T Consensus       484 vkas~vlkgfl-------nkdp~erlgc  504 (593)
T KOG0695|consen  484 VKASHVLKGFL-------NKDPKERLGC  504 (593)
T ss_pred             hhhHHHHHHhh-------cCCcHHhcCC
Confidence            77777777765       9999999754

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.42  E-value=1.9e-13  Score=87.30  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=35.6

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .++..|+|||++.+ ...++.++|+||+|++++++++|+.||...
T Consensus       160 ~~~~~~~aPE~~~~-~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  203 (283)
T cd07835         160 VVTLWYRAPEILLG-SRQYSTPVDIWSIGCIFAEMVNRRPLFPGD  203 (283)
T ss_pred             ccccCCCCCceeec-CcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            45778999998732 235688999999999999999999988643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=6.9e-13  Score=83.82  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=60.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   80 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..|+.......          .........   ........
T Consensus       153 ~~~~~~y~~pe~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  220 (260)
T cd05611         153 FVGTPDYLAPETI--LGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETPDA----------VFDNILSRRINWPEEVKEFC  220 (260)
T ss_pred             CCCCcCccChhhh--cCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCHHH----------HHHHHHhcccCCCCcccccC
Confidence            4578899999987  44557889999999999999999999986432210          111111111   11111223


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                      +.       .+..++..||+.+|++||++.++.+.
T Consensus       221 ~~-------~~~~~i~~~l~~~p~~R~~~~~~~~~  248 (260)
T cd05611         221 SP-------EAVDLINRLLCMDPAKRLGANGYQEI  248 (260)
T ss_pred             CH-------HHHHHHHHHccCCHHHccCCCcHHHH
Confidence            33       34555566999999999977544443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=4.8e-13  Score=88.47  Aligned_cols=92  Identities=21%  Similarity=0.304  Sum_probs=60.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC--CCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG--LVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   81 (133)
                      .+||+.|+|||++  ....++.++|+||+||+++++++|..||.......      .   .............+.  ..+
T Consensus       199 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~~~~------~---~~~i~~~~~~~~~~~~~~~s  267 (364)
T cd05599         199 TVGTPDYIAPEVF--LQTGYNKECDWWSLGVIMYEMLVGYPPFCSDNPQE------T---YRKIINWKETLQFPDEVPLS  267 (364)
T ss_pred             cccCccccCHHHH--cCCCCCCeeeeecchhHHHHhhcCCCCCCCCCHHH------H---HHHHHcCCCccCCCCCCCCC
Confidence            4699999999998  45678899999999999999999999987543211      0   111111111111122  234


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCC---HHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSS---MSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps---~~~v~~  114 (133)
                      ....+++.+       |+. +|.+|++   +.+++.
T Consensus       268 ~~~~~li~~-------ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         268 PEAKDLIKR-------LCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             HHHHHHHHH-------Hcc-CHhhcCCCCCHHHHhc
Confidence            444444443       555 8999997   888875

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.42  E-value=5.7e-13  Score=84.43  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=62.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..||......         ............+..+...++.
T Consensus       169 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---------~~~~~~~~~~~~~~~p~~~~~~  237 (264)
T cd06653         169 VTGTPYWMSPEVI--SGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAM---------AAIFKIATQPTKPMLPDGVSDA  237 (264)
T ss_pred             cCCcccccCHhhh--cCCCCCccccHHHHHHHHHHHHhCCCCCCccCHH---------HHHHHHHcCCCCCCCCcccCHH
Confidence            4578899999988  4456788999999999999999999998643211         1122222222223334445555


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+++.+       ||+ ++..||++.+++.
T Consensus       238 ~~~~i~~-------~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         238 CRDFLKQ-------IFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             HHHHHHH-------Hhc-CcccCccHHHHhc
Confidence            5555554       888 4799999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.41  E-value=6.7e-13  Score=84.90  Aligned_cols=95  Identities=17%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|++||.+. ....++.++|+||+|++++++++|..||.......    ..  . ... .........+...+..
T Consensus       155 ~~~~~~y~aPE~~~-~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~----~~--~-~~~-~~~~~~~~~~~~~~~~  225 (279)
T cd05633         155 SVGTHGYMAPEVLQ-KGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD----KH--E-IDR-MTLTVNVELPDSFSPE  225 (279)
T ss_pred             cCCCcCccCHHHhc-CCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcC----HH--H-HHH-HhhcCCcCCccccCHH
Confidence            35889999999872 13457889999999999999999999987543221    00  0 111 0111122223334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      .       ..++..||+.||++|+     +++++++
T Consensus       226 ~-------~~li~~~l~~~p~~R~~~~~~~~~~~~~  254 (279)
T cd05633         226 L-------KSLLEGLLQRDVSKRLGCLGRGAQEVKE  254 (279)
T ss_pred             H-------HHHHHHHhcCCHHHhcCCCCCCHHHHHh
Confidence            3       3444558999999999     5988876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.41  E-value=2e-13  Score=87.30  Aligned_cols=108  Identities=16%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHh-------hhcCC-----
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYK-------LLEPG-----   71 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~-------~~~~~-----   71 (133)
                      ..|+..|++||++.+ ...++.++|+||+|++++++++|..||.......  ...........       .....     
T Consensus       160 ~~~~~~~~aPE~~~~-~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (286)
T cd07847         160 YVATRWYRAPELLVG-DTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVD--QLYLIRKTLGDLIPRHQQIFSTNQFFKG  236 (286)
T ss_pred             cccccccCCHHHHhC-CCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHH--HHHHHHHHhCCCChHHhhhccccccccc
Confidence            346788999998732 2457889999999999999999999987543211  00000000000       00000     


Q ss_pred             ccccccCCCC---hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           72 EDLKRHGLVT---EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        72 ~~~~~~~~~~---~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .....+....   .........+.+++..||+.+|++||++.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  282 (286)
T cd07847         237 LSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLE  282 (286)
T ss_pred             ccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhc
Confidence            0000000000   001112235667777799999999999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.41  E-value=7.5e-13  Score=87.29  Aligned_cols=44  Identities=23%  Similarity=0.160  Sum_probs=37.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..|+..|+|||.+  ....++.++|+||+|++++++++|+.||...
T Consensus       177 ~~~~~~y~aPE~~--~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~  220 (353)
T cd07850         177 YVVTRYYRAPEVI--LGMGYKENVDIWSVGCIMGEMIRGTVLFPGT  220 (353)
T ss_pred             CcccccccCHHHH--hCCCCCCchhhHhHHHHHHHHHHCCCCCCCC
Confidence            4578889999998  5567889999999999999999999888643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.41  E-value=5.5e-13  Score=88.78  Aligned_cols=44  Identities=27%  Similarity=0.374  Sum_probs=39.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .+||+.|+|||++  ....++.++||||+||+++++++|..||...
T Consensus       208 ~~gt~~Y~aPE~~--~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  251 (382)
T cd05625         208 LVGTPNYIAPEVL--LRTGYTQLCDWWSVGVILYEMLVGQPPFLAQ  251 (382)
T ss_pred             cccCcccCCHHHh--cCCCCCCeeeEEechHHHHHHHhCCCCCCCC
Confidence            5799999999998  5567889999999999999999999999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.41  E-value=9.5e-13  Score=84.11  Aligned_cols=103  Identities=16%  Similarity=0.095  Sum_probs=62.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc-----------
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED-----------   73 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   73 (133)
                      .++..|++||.+.+ ...++.++|+|++|++++++++|+.|+.......      ..............           
T Consensus       162 ~~~~~y~~PE~~~~-~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  234 (287)
T cd07840         162 VITLWYRPPELLLG-ATRYGPEVDMWSVGCILAELFLGKPIFQGSTELE------QLEKIFELCGSPTDENWPGVSKLPW  234 (287)
T ss_pred             ccccccCCceeeEc-cccCChHHHHHHHHHHHHHHHhCCCCCCCCChHH------HHHHHHHHhCCCchhhccccccchh
Confidence            45778999997632 2357889999999999999999999986543211      00001000000000           


Q ss_pred             -------ccccCCCChhHHH-HHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           74 -------LKRHGLVTEEEEV-IVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        74 -------~~~~~~~~~~~~~-~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             ...+......... ....+..++..||+.+|.+||++.+++.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  283 (287)
T cd07840         235 FENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQ  283 (287)
T ss_pred             hhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence                   0000000011111 1345777888899999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.41  E-value=3.2e-13  Score=85.16  Aligned_cols=100  Identities=18%  Similarity=0.196  Sum_probs=64.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++. ....++.++|+||+|+++++++++..|+......      ....................... 
T Consensus       157 ~~~~~~~y~aPE~~~-~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-  228 (260)
T PF00069_consen  157 PFVGTPEYMAPEVLQ-QGKKYTRKSDIWSLGIILYELLTGKLPFEESNSD------DQLEIIEKILKRPLPSSSQQSRE-  228 (260)
T ss_dssp             SSSSSGGGSCHHHHT-TTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHH------HHHHHHHHHHHTHHHHHTTSHTT-
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccccccccch------hhhhhhhhcccccccccccccch-
Confidence            356888999999982 1568889999999999999999999988754110      11111111111000000000000 


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                          ....+.+++..||+.||++||++.++++
T Consensus       229 ----~~~~l~~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  229 ----KSEELRDLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             ----SHHHHHHHHHHHSSSSGGGSTTHHHHHT
T ss_pred             ----hHHHHHHHHHHHccCChhHCcCHHHHhc
Confidence                0146667777799999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.41  E-value=2.6e-13  Score=89.11  Aligned_cols=112  Identities=14%  Similarity=0.090  Sum_probs=65.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhh-----------hcCCc
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKL-----------LEPGE   72 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~   72 (133)
                      ..|+..|+|||++.. ...++.++|+||+|++++++++|+.||.......      ........           +....
T Consensus       174 ~~~~~~y~aPE~~~~-~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  246 (342)
T cd07879         174 YVVTRWYRAPEVILN-WMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD------QLTQILKVTGVPGPEFVQKLEDKA  246 (342)
T ss_pred             ceeeecccChhhhcC-ccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHhcCCCCHHHHHHhcccc
Confidence            457788999998732 2457889999999999999999999987532110      00000000           00000


Q ss_pred             ---cc-cccCCCChh----HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccC
Q 040499           73 ---DL-KRHGLVTEE----EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEA  122 (133)
Q Consensus        73 ---~~-~~~~~~~~~----~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~  122 (133)
                         .. ..+......    .......+..++.+||+.||++||++.+++.  .+++....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~  306 (342)
T cd07879         247 AKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDA  306 (342)
T ss_pred             hHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhcccc
Confidence               00 000000000    0011224567777799999999999999984  46655443

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.41  E-value=5.6e-13  Score=85.83  Aligned_cols=94  Identities=17%  Similarity=0.187  Sum_probs=61.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+||+|++++++++|..|+......      ...........  .........+. 
T Consensus       176 ~~~~~~y~~pE~~--~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~-  244 (292)
T cd06657         176 LVGTPYWMAPELI--SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL------KAMKMIRDNLP--PKLKNLHKVSP-  244 (292)
T ss_pred             cccCccccCHHHh--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHhhCC--cccCCcccCCH-
Confidence            3578889999987  4566788999999999999999999998643211      00111111110  00001111223 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++.+||+.+|.+||++.+|+.
T Consensus       245 ------~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         245 ------SLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             ------HHHHHHHHHHhCCcccCcCHHHHhc
Confidence                  3445566699999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.41  E-value=5.6e-13  Score=83.74  Aligned_cols=92  Identities=22%  Similarity=0.355  Sum_probs=61.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||..  ....++.++|+|++|++++++++|..|+......        .. .... ........+...+..
T Consensus       159 ~~~~~~y~~pe~~--~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~~--------~~-~~~~-~~~~~~~~~~~~~~~  226 (254)
T cd06627         159 VVGTPYWMAPEVI--EMSGASTASDIWSLGCTVIELLTGNPPYYDLNPM--------AA-LFRI-VQDDHPPLPEGISPE  226 (254)
T ss_pred             cccchhhcCHhhh--cCCCCCcchhHHHHHHHHHHHHhCCCCCCCccHH--------HH-HHHH-hccCCCCCCCCCCHH
Confidence            4578889999987  3445788999999999999999999888643211        00 1111 111222223333443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             +..++.+||+.+|++||++.+++.
T Consensus       227 -------~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         227 -------LKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             -------HHHHHHHHHhCChhhCcCHHHHhc
Confidence                   344555599999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.41  E-value=6.6e-13  Score=86.89  Aligned_cols=103  Identities=17%  Similarity=0.113  Sum_probs=61.6

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc----------
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL----------   74 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   74 (133)
                      .++..|++||.+.+ ...++.++|+||+|++++++++|..|+......      .....+..........          
T Consensus       194 ~~~~~y~aPE~~~~-~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~  266 (335)
T PTZ00024        194 VVTLWYRAPELLMG-AEKYHFAVDMWSVGCIFAELLTGKPLFPGENEI------DQLGRIFELLGTPNEDNWPQAKKLPL  266 (335)
T ss_pred             ccccCCCCChhccc-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHHhCCCchhhCcchhhccc
Confidence            45778999998732 234688999999999999999999888654321      1111111111000000          


Q ss_pred             ------cccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           75 ------KRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        75 ------~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            ..+.............+.+++..||+.+|++||++.+++.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  312 (335)
T PTZ00024        267 YTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALK  312 (335)
T ss_pred             ccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhc
Confidence                  0000000001111234566777799999999999999986

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.40  E-value=2.6e-13  Score=90.17  Aligned_cols=45  Identities=27%  Similarity=0.378  Sum_probs=39.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +.+||..|+|||++  ....++.++||||+||+++++++|..||...
T Consensus       203 ~~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  247 (376)
T cd05598         203 SLVGTPNYIAPEVL--LRTGYTQLCDWWSVGVILYEMLVGQPPFLAD  247 (376)
T ss_pred             ccCCCccccCHHHH--cCCCCCcceeeeeccceeeehhhCCCCCCCC
Confidence            35799999999998  5567889999999999999999999999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.40  E-value=1.7e-12  Score=82.12  Aligned_cols=95  Identities=18%  Similarity=0.274  Sum_probs=62.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..|+.......       ................+...+. 
T Consensus       152 ~~~~~~~~~PE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-  221 (262)
T cd05572         152 FCGTPEYVAPEII--LNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDP-------MEIYNDILKGNGKLEFPNYIDK-  221 (262)
T ss_pred             ccCCcCccChhHh--cCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCH-------HHHHHHHhccCCCCCCCcccCH-
Confidence            4578899999987  45567889999999999999999999987553210       0111111111112222322233 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                            .+..++..||+.+|++|++     +.++++
T Consensus       222 ------~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         222 ------AAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             ------HHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence                  4556666699999999999     777765

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.40  E-value=1.1e-12  Score=86.18  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--------   74 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   74 (133)
                      ...++..|++||.+.. ...++.++||||+|++++++++|+.||.......      ....+..........        
T Consensus       174 ~~~~~~~y~aPE~~~~-~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~  246 (343)
T cd07851         174 GYVATRWYRAPEIMLN-WMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHID------QLKRIMNLVGTPDEELLQKISSE  246 (343)
T ss_pred             CCcccccccCHHHHhC-CCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH------HHHHHHHhcCCCCHHHHhhccch
Confidence            3467888999998732 2357789999999999999999999886432210      000000000000000        


Q ss_pred             -------cccCC----CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           75 -------KRHGL----VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        75 -------~~~~~----~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                             ..+..    ...........+..++..||+.||++||++.+|+.  .+++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~  304 (343)
T cd07851         247 SARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEY  304 (343)
T ss_pred             hHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCcccc
Confidence                   00000    00000111335667777799999999999999976  44443

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.39  E-value=6.6e-13  Score=84.89  Aligned_cols=104  Identities=15%  Similarity=0.071  Sum_probs=61.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc----------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED----------   73 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   73 (133)
                      ..|+..|++||.+.. ...++.++|||++|++++++++|..++......      .........+.....          
T Consensus       160 ~~~~~~y~aPE~~~~-~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  232 (286)
T cd07832         160 QVATRWYRAPELLYG-ARKYDPGVDLWAVGCIFAELLNGSPLFPGENDI------EQLAIVFRTLGTPNEETWPGLTSLP  232 (286)
T ss_pred             ccCcccccCceeeec-cccCCchhHHHHHHHHHHHHHcCCcCcCCCCHH------HHHHHHHHHcCCCChHHHhhccCcc
Confidence            457889999998732 235688999999999999999997766543211      000001110000000          


Q ss_pred             ----ccccCCCC----hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           74 ----LKRHGLVT----EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        74 ----~~~~~~~~----~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                          ...+....    .........+..++..||+.+|.+||++++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~  281 (286)
T cd07832         233 DYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALR  281 (286)
T ss_pred             hhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhh
Confidence                00000000    000112245667777799999999999999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.39  E-value=1.7e-12  Score=83.84  Aligned_cols=44  Identities=18%  Similarity=0.171  Sum_probs=35.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .++..|+|||.+.. ...++.++|+||+|++++++++|..++...
T Consensus       184 ~~~~~y~aPE~~~~-~~~~~~~~Di~slG~~l~el~t~~~~~~~~  227 (310)
T cd07865         184 VVTLWYRPPELLLG-ERDYGPPIDMWGAGCIMAEMWTRSPIMQGN  227 (310)
T ss_pred             ccCccccCcHHhcC-CcccCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            46778999998732 234678999999999999999998887654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.39  E-value=1.1e-12  Score=83.76  Aligned_cols=110  Identities=18%  Similarity=0.160  Sum_probs=62.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCC-------CcchhhhHHHHh-hhcCCcccc
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTS-------STEMYFPDWFYK-LLEPGEDLK   75 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~   75 (133)
                      ..|+..|++||++.. ...++.++|+||||++++++++|+.++........       ........|... .........
T Consensus       158 ~~~~~~~~aPE~~~~-~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (283)
T cd07830         158 YVSTRWYRAPEILLR-STSYSSPVDIWALGCIMAELYTLRPLFPGSSEIDQLYKICSVLGTPTKQDWPEGYKLASKLGFR  236 (283)
T ss_pred             CCCcccccCceeeec-CcCcCCccchhhHHHHHHHHHhCCCccCCCChHHHHHHHHHhcCCCChhhhhhHhhhhcccccc
Confidence            457888999998732 34578899999999999999999888754322100       000000000000 000000000


Q ss_pred             ccCCCChhHH----HHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           76 RHGLVTEEEE----VIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        76 ~~~~~~~~~~----~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+........    .....+..++..||+.+|++||++++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  279 (283)
T cd07830         237 FPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQ  279 (283)
T ss_pred             ccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhh
Confidence            0111100000    11235667778899999999999999875

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.39  E-value=1.7e-12  Score=83.02  Aligned_cols=95  Identities=16%  Similarity=0.195  Sum_probs=62.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+.. ...++.++|+||+|++++++++|..||........      .. .... ........+...+..
T Consensus       155 ~~~~~~y~aPE~~~~-~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~------~~-~~~~-~~~~~~~~~~~~s~~  225 (278)
T cd05606         155 SVGTHGYMAPEVLQK-GVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK------HE-IDRM-TLTMAVELPDSFSPE  225 (278)
T ss_pred             cCCCcCCcCcHHhcC-CCCCCcccchHhHHHHHHHHHhCCCCCCCCCccch------HH-HHHH-hhccCCCCCCcCCHH
Confidence            458899999999731 23578899999999999999999999875422110      00 1111 111122233334444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ..+++       ..|+..+|.+|+     ++.++++
T Consensus       226 ~~~li-------~~~l~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         226 LRSLL-------EGLLQRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             HHHHH-------HHHhhcCHHhccCCCCCCHHHHHh
Confidence            44444       448899999999     8999885

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.39  E-value=5.5e-13  Score=85.32  Aligned_cols=44  Identities=20%  Similarity=0.193  Sum_probs=35.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..|+..|++||++.. ...++.++||||+|++++++++|..++..
T Consensus       160 ~~~~~~y~aPE~~~~-~~~~~~~~Dv~slG~~l~el~~g~~~~~~  203 (286)
T cd07846         160 YVATRWYRAPELLVG-DTKYGRAVDIWAVGCLVTEMLTGEPLFPG  203 (286)
T ss_pred             ccceeeccCcHHhcc-ccccCchHhHHHHHHHHHHHHcCCCCCCC
Confidence            457888999998732 23567889999999999999999888754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.38  E-value=1.3e-13  Score=90.04  Aligned_cols=94  Identities=19%  Similarity=0.193  Sum_probs=59.9

Q ss_pred             CCccccccCccccccc----cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC-
Q 040499            4 ARGTVSYIAPEVFCRN----FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG-   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~----~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (133)
                      ..||..|+|||++...    ...++.++||||+|++++++++|..||.......         ..............+. 
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~---------~~~~i~~~~~~~~~~~~  233 (330)
T cd05601         163 PVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAK---------TYNNIMNFQRFLKFPED  233 (330)
T ss_pred             ccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHH---------HHHHHHcCCCccCCCCC
Confidence            3689999999987321    3457789999999999999999999986542211         0111111111111121 


Q ss_pred             -CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 -LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       ..+....+       ++..|++ +|++|+++.+++.
T Consensus       234 ~~~~~~~~~-------li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         234 PKVSSDFLD-------LIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             CCCCHHHHH-------HHHHHcc-ChhhCCCHHHHhC
Confidence             23443333       3444777 9999999999885

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.38  E-value=3.7e-13  Score=89.47  Aligned_cols=44  Identities=30%  Similarity=0.410  Sum_probs=39.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .+||..|+|||++  ....++.++|+||+||+++++++|..||...
T Consensus       208 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  251 (377)
T cd05629         208 TVGTPDYIAPEIF--LQQGYGQECDWWSLGAIMFECLIGWPPFCSE  251 (377)
T ss_pred             cCCCccccCHHHH--ccCCCCCceeeEecchhhhhhhcCCCCCCCC
Confidence            4699999999998  5567889999999999999999999998653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.38  E-value=1.7e-12  Score=80.75  Aligned_cols=93  Identities=18%  Similarity=0.219  Sum_probs=62.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC--CC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL--VT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   81 (133)
                      ..|+..|++||..  ....++.++|+|++|+++++++++..|+......     .    .................  .+
T Consensus       146 ~~~~~~~~~pE~~--~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~  214 (244)
T smart00220      146 FVGTPEYMAPEVL--LGKGYGKAVDVWSLGVILYELLTGKPPFPGDDQL-----L----ELFKKIGKPKPPFPPPEWKIS  214 (244)
T ss_pred             ccCCcCCCCHHHH--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCcH-----H----HHHHHHhccCCCCccccccCC
Confidence            4577889999987  4567788999999999999999999888652111     0    12222222211111111  22


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             ..+..++..||..+|++||++.++++
T Consensus       215 -------~~~~~~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      215 -------PEAKDLIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             -------HHHHHHHHHHccCCchhccCHHHHhh
Confidence                   24556666799999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.38  E-value=9.2e-13  Score=89.70  Aligned_cols=92  Identities=26%  Similarity=0.411  Sum_probs=68.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc-cCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR-HGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   81 (133)
                      +.+||+-+||||++   ...|+..+||||||..++||+++.-||......         .-++..+..+..|.. .....
T Consensus       203 svIGTPEFMAPEmY---EE~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n~---------AQIYKKV~SGiKP~sl~kV~d  270 (632)
T KOG0584|consen  203 SVIGTPEFMAPEMY---EENYNELVDVYAFGMCMLEMVTSEYPYSECTNP---------AQIYKKVTSGIKPAALSKVKD  270 (632)
T ss_pred             eeccCccccChHHH---hhhcchhhhhhhhhHHHHHHHhccCChhhhCCH---------HHHHHHHHcCCCHHHhhccCC
Confidence            35799999999998   479999999999999999999999999765332         114444444444332 23334


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +..++++.+       |+.. .++|+|+.++++
T Consensus       271 Pevr~fIek-------Cl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  271 PEVREFIEK-------CLAT-KSERLSAKELLK  295 (632)
T ss_pred             HHHHHHHHH-------HhcC-chhccCHHHHhh
Confidence            444455554       9898 999999999986

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.37  E-value=1.4e-12  Score=85.40  Aligned_cols=97  Identities=19%  Similarity=0.311  Sum_probs=61.1

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---cccc
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---LKRH   77 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   77 (133)
                      .+||..|+|||++..   ....++.++|+||+|++++++++|+.||.......         ...........   +...
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~~~~---------~~~~i~~~~~~~~~p~~~  233 (332)
T cd05623         163 AVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVE---------TYGKIMNHKERFQFPAQV  233 (332)
T ss_pred             cccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCCCHHH---------HHHHHhCCCccccCCCcc
Confidence            468999999998732   12457889999999999999999999986532111         11111111111   1112


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+....+++.+++     |...++..|+++.++++
T Consensus       234 ~~~s~~~~~li~~ll-----~~~~~r~~r~~~~~~~~  265 (332)
T cd05623         234 TDVSEDAKDLIRRLI-----CSREHRLGQNGIEDFKQ  265 (332)
T ss_pred             ccCCHHHHHHHHHHc-----cChhhhcCCCCHHHHhC
Confidence            234555666666544     44555556789998875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.37  E-value=3.3e-12  Score=82.82  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=37.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      ..||..|+|||++. ....++.++|+||+|+++++++++..|+....
T Consensus       175 ~~~~~~y~aPE~~~-~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  220 (316)
T cd07842         175 VVVTIWYRAPELLL-GARHYTKAIDIWAIGCIFAELLTLEPIFKGRE  220 (316)
T ss_pred             ccccccccCHHHHh-CCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCc
Confidence            35678899999873 22457889999999999999999999987543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.37  E-value=1.1e-12  Score=84.60  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=36.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..++..|++||.+.+ ...++.++||||+|++++++++|+.||...
T Consensus       164 ~~~~~~y~~PE~~~~-~~~~~~~~Dv~slG~~l~el~tg~~~f~~~  208 (301)
T cd07873         164 EVVTLWYRPPDILLG-STDYSTQIDMWGVGCIFYEMSTGRPLFPGS  208 (301)
T ss_pred             cceeecccCcHHHhC-CCCCccHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            346788999998732 235778999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.37  E-value=2.4e-12  Score=82.58  Aligned_cols=101  Identities=19%  Similarity=0.225  Sum_probs=62.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+.......+.++|+|++|++++++++|..|+.......  .   .......... . ....+...+..
T Consensus       166 ~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~---~~~~~~~~~~-~-~~~~~~~~~~~  238 (288)
T cd05583         166 FCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQN--S---QSEISRRILK-S-KPPFPKTMSAE  238 (288)
T ss_pred             ccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccc--h---HHHHHHHHHc-c-CCCCCcccCHH
Confidence            35788999999873222236789999999999999999999985432211  0   0111111111 1 11223333333


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG  118 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~  118 (133)
                             +..++..||+.||++||++.++...|+.
T Consensus       239 -------l~~li~~~l~~~p~~R~t~~~~~~~l~~  266 (288)
T cd05583         239 -------ARDFIQKLLEKDPKKRLGANGADEIKNH  266 (288)
T ss_pred             -------HHHHHHHHhcCCHhhccCcchHHHHhcC
Confidence                   3445555999999999998877665554

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.36  E-value=1.4e-12  Score=82.29  Aligned_cols=93  Identities=20%  Similarity=0.195  Sum_probs=62.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  ....++.++|+|++|++++++++|..|+.......       .......... .....+...+. 
T Consensus       159 ~~~~~~y~~PE~~--~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~-  227 (258)
T cd05578         159 TSGTPGYMAPEVL--CRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTI-------RDQIRAKQET-ADVLYPATWST-  227 (258)
T ss_pred             cCCChhhcCHHHH--cccCCCCcccchhhHHHHHHHHhCCCCCCCCCccH-------HHHHHHHhcc-ccccCcccCcH-
Confidence            4577889999988  44567889999999999999999999987543211       1112211111 12222333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCH--HHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSM--SKAV  113 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~--~~v~  113 (133)
                            .+..++..||+.||.+||++  ++++
T Consensus       228 ------~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         228 ------EAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             ------HHHHHHHHHccCChhHcCCccHHHHh
Confidence                  45555566999999999999  6654

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.36  E-value=4.4e-12  Score=81.67  Aligned_cols=103  Identities=16%  Similarity=0.109  Sum_probs=61.0

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC------------c
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG------------E   72 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------------~   72 (133)
                      .++..|+|||.+. ....++.++|+||+|++++++++|.+++.......      ........+...            .
T Consensus       163 ~~~~~y~aPE~~~-~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  235 (298)
T cd07841         163 VVTRWYRAPELLF-GARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDID------QLGKIFEALGTPTEENWPGVTSLPD  235 (298)
T ss_pred             ccceeeeCHHHHh-CCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHH------HHHHHHHHcCCCchhhhhhcccccc
Confidence            4567899999873 22456889999999999999999977665432110      000000000000            0


Q ss_pred             --cccc-cC-CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           73 --DLKR-HG-LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        73 --~~~~-~~-~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                        .... +. ............+.+++..||+.||++||++.+|+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~  281 (298)
T cd07841         236 YVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALE  281 (298)
T ss_pred             cccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhh
Confidence              0000 00 000111122345677888899999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.36  E-value=4.7e-12  Score=80.99  Aligned_cols=44  Identities=25%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .++..|++||.+.+ ...++.++|+||+|++++++++|+.||...
T Consensus       161 ~~~~~y~aPE~~~~-~~~~~~~~Dv~slG~il~~l~tg~~p~~~~  204 (284)
T cd07860         161 VVTLWYRAPEILLG-CKYYSTAVDIWSLGCIFAEMVTRRALFPGD  204 (284)
T ss_pred             cccccccCCeEEec-CCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            46778999998732 234578899999999999999999988643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.36  E-value=3.9e-12  Score=81.18  Aligned_cols=95  Identities=19%  Similarity=0.228  Sum_probs=61.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||++  ....++.++|+|++|++++++++|+.||........  .   .. +..... ......+...++.
T Consensus       154 ~~~~~~y~~PE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~--~---~~-~~~~~~-~~~~~~~~~~~~~  224 (277)
T cd05577         154 RAGTPGYMAPEVL--QGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKVE--K---EE-LKRRTL-EMAVEYPDKFSPE  224 (277)
T ss_pred             ccCCCCcCCHHHh--cCCCCCchhhhHHHHHHHHHHhhCCCCCCCCccccc--H---HH-HHhccc-cccccCCccCCHH
Confidence            3467789999997  445688899999999999999999999865433110  0   00 111111 1122223334444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ..       .++..||+.||++||     ++.+++.
T Consensus       225 ~~-------~li~~~l~~~p~~R~~~~~~~~~~ll~  253 (277)
T cd05577         225 AK-------DLCEALLQKDPEKRLGCRGGSADEVRE  253 (277)
T ss_pred             HH-------HHHHHHccCChhHccCCCcccHHHHHh
Confidence            44       444559999999999     6666764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.35  E-value=1.5e-12  Score=82.35  Aligned_cols=97  Identities=20%  Similarity=0.290  Sum_probs=68.7

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC---
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG---   78 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   78 (133)
                      .+.+-|++|.|||++  ...+|+..+|+||+||++|-++.|.+||.......+..+      ....+..+.. .+|.   
T Consensus       221 ~TPc~TPyYvaPevl--g~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispg------Mk~rI~~gqy-~FP~pEW  291 (400)
T KOG0604|consen  221 MTPCFTPYYVAPEVL--GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG------MKRRIRTGQY-EFPEPEW  291 (400)
T ss_pred             cCCcccccccCHHHh--CchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChh------HHhHhhccCc-cCCChhH
Confidence            456789999999998  456899999999999999999999999987655432122      3333333322 1121   


Q ss_pred             -CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 -LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 -~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       .+++...+.++.       .|..+|.+|.++.++++
T Consensus       292 s~VSe~aKdlIR~-------LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  292 SCVSEAAKDLIRK-------LLKTEPTERLTIEEVMD  321 (400)
T ss_pred             hHHHHHHHHHHHH-------HhcCCchhheeHHHhhc
Confidence             234445555555       44999999999999986

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.35  E-value=2.1e-12  Score=82.98  Aligned_cols=91  Identities=15%  Similarity=0.245  Sum_probs=60.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+  .....+.++|+||+|++++++++|..|+.......          .......+ ....+...+..
T Consensus       158 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~  224 (290)
T cd05580         158 LCGTPEYLAPEII--LSKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQ----------IYEKILEG-KVRFPSFFSPD  224 (290)
T ss_pred             CCCCccccChhhh--cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHH----------HHHHHhcC-CccCCccCCHH
Confidence            4588899999987  44567889999999999999999999986433110          11111111 12233334444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ..       .++..||+.||.+|+     ++.++++
T Consensus       225 l~-------~li~~~l~~~p~~R~~~~~~~~~~l~~  253 (290)
T cd05580         225 AK-------DLIRNLLQVDLTKRLGNLKNGVNDIKN  253 (290)
T ss_pred             HH-------HHHHHHccCCHHHccCcccCCHHHHHc
Confidence            33       444559999999999     7777763

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.35  E-value=8.4e-13  Score=88.68  Aligned_cols=87  Identities=21%  Similarity=0.346  Sum_probs=67.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHh-hhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYK-LLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (133)
                      ++|||+-|.|||++  .....+..+|.|++|+.++|+++|.+||.+..+..          ... .++.......|..++
T Consensus       578 TFcGTpEYVAPEII--LnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmk----------tYn~ILkGid~i~~Pr~I~  645 (732)
T KOG0614|consen  578 TFCGTPEYVAPEII--LNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMK----------TYNLILKGIDKIEFPRRIT  645 (732)
T ss_pred             eecCCcccccchhh--hccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHH----------HHHHHHhhhhhhhcccccc
Confidence            58999999999999  55677899999999999999999999998765432          222 223333445577778


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSS  108 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps  108 (133)
                      ....+++++++       ..+|.+|..
T Consensus       646 k~a~~Lik~LC-------r~~P~ERLG  665 (732)
T KOG0614|consen  646 KTATDLIKKLC-------RDNPTERLG  665 (732)
T ss_pred             hhHHHHHHHHH-------hcCcHhhhc
Confidence            88888888865       778999976

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.35  E-value=9.1e-12  Score=81.99  Aligned_cols=44  Identities=25%  Similarity=0.322  Sum_probs=36.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..|+..|+|||.+. ....++.++|+||+|++++++++|+.|+..
T Consensus       177 ~~~~~~y~aPE~~~-~~~~~~~~~DvwslG~il~el~~g~~pf~~  220 (345)
T cd07877         177 YVATRWYRAPEIML-NWMHYNQTVDIWSVGCIMAELLTGRTLFPG  220 (345)
T ss_pred             cccCCCccCHHHHh-CccCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            45788999999873 224578899999999999999999998854

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.34  E-value=3.7e-12  Score=81.25  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=61.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhh-----------c----
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLL-----------E----   69 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----------~----   69 (133)
                      .++..|+|||.+.. ...++.++|+|++|+++++++++..|+.......      ....+....           .    
T Consensus       159 ~~~~~~~aPE~~~~-~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  231 (282)
T cd07829         159 VVTLWYRAPEILLG-SKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEID------QLFKIFQILGTPTEESWPGVTKLPD  231 (282)
T ss_pred             ccCcCcCChHHhcC-CcCCCccccHHHHHHHHHHHHhCCCCCCCccHHH------HHHHHHHHhCCCcHHHHHhhccccc
Confidence            34677999998732 2367889999999999999999988886532110      000000000           0    


Q ss_pred             -CCccccc-cCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           70 -PGEDLKR-HGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        70 -~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       ....+.. ..............+..++..||+.||++||++.+|+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~  278 (282)
T cd07829         232 YKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALK  278 (282)
T ss_pred             ccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhh
Confidence             0000000 00000111112345777778899999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.34  E-value=2.5e-12  Score=82.68  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=35.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .++..|++||.+.. ...++.++|+||+|++++++++|..|+...
T Consensus       167 ~~~~~~~aPE~~~~-~~~~~~~~Di~slG~~l~~l~~g~~~f~~~  210 (293)
T cd07843         167 VVTLWYRAPELLLG-AKEYSTAIDMWSVGCIFAELLTKKPLFPGK  210 (293)
T ss_pred             cccccccCchhhcC-CccccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            46778999998732 234678999999999999999999888643

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.34  E-value=1.9e-12  Score=81.76  Aligned_cols=95  Identities=20%  Similarity=0.209  Sum_probs=60.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .++..|++||..  .....+.++|+|++|++++++++|..||......         . .......... ..+...    
T Consensus       162 ~~~~~~~~Pe~~--~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~~---------~-~~~~~~~~~~-~~~~~~----  224 (265)
T cd05579         162 VGTPDYIAPEVI--LGQGHSKTVDWWSLGCILYEFLVGIPPFHGETPE---------E-IFQNILNGKI-EWPEDV----  224 (265)
T ss_pred             ccCccccCHHHh--cCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHH---------H-HHHHHhcCCc-CCCccc----
Confidence            467789999987  4455788999999999999999999998643211         1 1111111111 111111    


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                       .....+..++..||+.+|++||++..+.+.|+
T Consensus       225 -~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         225 -EVSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             -cCCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence             01224455566699999999999955554443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.34  E-value=3.3e-12  Score=83.62  Aligned_cols=97  Identities=21%  Similarity=0.320  Sum_probs=61.4

Q ss_pred             CCccccccCccccccc---cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc---c
Q 040499            4 ARGTVSYIAPEVFCRN---FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR---H   77 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~---~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~   77 (133)
                      .+||..|+|||++...   ...++.++||||+|++++++++|..||.......         ..............   .
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~---------~~~~i~~~~~~~~~~~~~  233 (331)
T cd05597         163 AVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVE---------TYGKIMNHKEHFQFPPDV  233 (331)
T ss_pred             eeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCCCHHH---------HHHHHHcCCCcccCCCcc
Confidence            3589999999998321   2356789999999999999999999986532110         01111111111111   1


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+....+++.+++     |...++..|+++.+++.
T Consensus       234 ~~~~~~~~~li~~ll-----~~~~~r~~r~~~~~~l~  265 (331)
T cd05597         234 TDVSEEAKDLIRRLI-----CSPETRLGRNGLQDFKD  265 (331)
T ss_pred             CCCCHHHHHHHHHHc-----cCcccccCCCCHHHHhc
Confidence            224555666666644     55666666899998876

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.34  E-value=3.5e-12  Score=82.61  Aligned_cols=44  Identities=20%  Similarity=0.252  Sum_probs=35.6

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .++..|+|||.+.+ ...++.++|+||+|++++++++|..|+...
T Consensus       169 ~~~~~y~aPE~~~~-~~~~~~~~DvwslG~il~el~~g~~~f~~~  212 (309)
T cd07845         169 VVTLWYRAPELLLG-CTTYTTAIDMWAVGCILAELLAHKPLLPGK  212 (309)
T ss_pred             cccccccChhhhcC-CCCcCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            35677999998732 245788999999999999999999988643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.34  E-value=5.5e-12  Score=81.06  Aligned_cols=103  Identities=17%  Similarity=0.105  Sum_probs=60.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc-----------
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED-----------   73 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   73 (133)
                      .++..|+|||++.+ ...++.++|+||+|++++++++|..|+.......      ....+...+.....           
T Consensus       172 ~~~~~~~aPE~~~~-~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  244 (295)
T cd07837         172 IVTLWYRAPEVLLG-STHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQ------QLLHIFKLLGTPTEQVWPGVSKLRD  244 (295)
T ss_pred             ccccCCCChHHhhC-CCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHH------HHHHHHHHhCCCChhhCcchhhccc
Confidence            35678999998732 2457889999999999999999998886432110      00000000000000           


Q ss_pred             -ccccCCCC----hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           74 -LKRHGLVT----EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        74 -~~~~~~~~----~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       ...+....    .........+..++..||+.||.+||++.+++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         245 WHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             hhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence             00000000    000112234566777799999999999999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.34  E-value=2.9e-12  Score=80.43  Aligned_cols=87  Identities=20%  Similarity=0.251  Sum_probs=58.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||..  .....+.++|+|++|++++++++|..||......      .    ....+.. .....+...+..
T Consensus       153 ~~~~~~~~~Pe~~--~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~~------~----~~~~~~~-~~~~~~~~~~~~  219 (250)
T cd05123         153 FCGTPEYLAPEVL--LGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDRK------E----IYEKILK-DPLRFPEFLSPE  219 (250)
T ss_pred             CcCCccccChHHh--CCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH------H----HHHHHhc-CCCCCCCCCCHH
Confidence            4578899999987  4456788999999999999999999998643211      0    1111111 122233434443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMS  110 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~  110 (133)
                             +..++..||..||++||++.
T Consensus       220 -------l~~~i~~~l~~~p~~R~~~~  239 (250)
T cd05123         220 -------ARDLISGLLQKDPTKRLGSG  239 (250)
T ss_pred             -------HHHHHHHHhcCCHhhCCCcc
Confidence                   34455559999999999994

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.34  E-value=2.3e-12  Score=82.06  Aligned_cols=91  Identities=13%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||..  ....++.++|+|++|++++++++|..|+.......          ....... .....+...+..
T Consensus       182 ~~~~~~~~~Pe~~--~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~  248 (280)
T cd05581         182 FVGTAEYVSPELL--NEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNEYL----------TFQKILK-LEYSFPPNFPPD  248 (280)
T ss_pred             ccCCccccCHHHh--CCCCCChhhhHHHHHHHHHHHHhCCCCCCCccHHH----------HHHHHHh-cCCCCCCccCHH
Confidence            3577889999987  44567889999999999999999999987543110          1111111 111223333443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCH----HHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSM----SKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~----~~v~~  114 (133)
                             +..++..||+.+|++||++    +++++
T Consensus       249 -------~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         249 -------AKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             -------HHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence                   4445555899999999999    77654

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.34  E-value=6.3e-12  Score=82.27  Aligned_cols=44  Identities=27%  Similarity=0.395  Sum_probs=36.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..||..|+|||.+. ....++.++|+||+|++++++++|..|+..
T Consensus       169 ~~g~~~y~aPE~~~-~~~~~~~~~Di~slGv~l~~l~~g~~pf~~  212 (332)
T cd07857         169 YVATRWYRAPEIML-SFQSYTKAIDVWSVGCILAELLGRKPVFKG  212 (332)
T ss_pred             cccCccccCcHHHh-CCCCCCcHHHHHHHHHHHHHHHhCCcCCCC
Confidence            46888999999863 224578899999999999999999988764

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=1.5e-12  Score=94.28  Aligned_cols=97  Identities=19%  Similarity=0.317  Sum_probs=60.7

Q ss_pred             CCCCccccccCcccccccc-CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNF-GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~-~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      |+.+||.-|+|||.+.... ..|+.|+|+||+|++++||+.   ||...-        +- ......++.+..+......
T Consensus       773 Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~y---PF~TsM--------ER-a~iL~~LR~g~iP~~~~f~  840 (1351)
T KOG1035|consen  773 TSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLY---PFGTSM--------ER-ASILTNLRKGSIPEPADFF  840 (1351)
T ss_pred             ccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhc---cCCchH--------HH-HHHHHhcccCCCCCCcccc
Confidence            6789999999999984322 279999999999999999986   343211        10 0123333433333221112


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.    ...-.+++...++.||++|||+.++++
T Consensus       841 ~~~----~~~e~slI~~Ll~hdP~kRPtA~eLL~  870 (1351)
T KOG1035|consen  841 DPE----HPEEASLIRWLLSHDPSKRPTATELLN  870 (1351)
T ss_pred             ccc----chHHHHHHHHHhcCCCccCCCHHHHhh
Confidence            211    112223333466999999999999986

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.33  E-value=3e-12  Score=82.55  Aligned_cols=103  Identities=17%  Similarity=0.089  Sum_probs=60.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc-------
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH-------   77 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   77 (133)
                      .++..|++||.+.. ...++.++|||++|++++++++|+.|+......      .....+............+       
T Consensus       178 ~~~~~y~~PE~~~~-~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (302)
T cd07864         178 VITLWYRPPELLLG-EERYGPAIDVWSCGCILGELFTKKPIFQANQEL------AQLELISRLCGSPCPAVWPDVIKLPY  250 (302)
T ss_pred             eeccCccChHHhcC-CCCCCchhHHHHHHHHHHHHHhCCCCCCCCChH------HHHHHHHHHhCCCChhhccccccccc
Confidence            34667999998732 235678999999999999999999888643211      0000011110000000000       


Q ss_pred             -----------CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 -----------GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 -----------~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                                 .............+..++..||+.||++||++.+|+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~  298 (302)
T cd07864         251 FNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALN  298 (302)
T ss_pred             ccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                       0000011112235667777799999999999999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.33  E-value=9.3e-13  Score=82.11  Aligned_cols=99  Identities=19%  Similarity=0.202  Sum_probs=67.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      +|...|||||.+......|+.++||||+|++++|+.+|+-||..-..        .-+.+.... .+.++...  .+...
T Consensus       228 aGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s--------vfeql~~Vv-~gdpp~l~--~~~~~  296 (361)
T KOG1006|consen  228 AGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS--------VFEQLCQVV-IGDPPILL--FDKEC  296 (361)
T ss_pred             cCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH--------HHHHHHHHH-cCCCCeec--Ccccc
Confidence            57788999999965555699999999999999999999999875322        111122222 22222221  12222


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...-..+..++..|+.+|-++||...+++.
T Consensus       297 ~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  297 VHYSFSMVRFINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             cccCHHHHHHHHHHhhcccccCcchhhhhc
Confidence            233345667777799999999999998864

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.33  E-value=2.5e-12  Score=82.22  Aligned_cols=45  Identities=22%  Similarity=0.242  Sum_probs=36.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..++..|++||++.+ ...++.++|+|++|++++++++|..|+...
T Consensus       160 ~~~~~~y~~PE~~~~-~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~  204 (284)
T cd07836         160 EVVTLWYRAPDVLLG-SRTYSTSIDIWSVGCIMAEMITGRPLFPGT  204 (284)
T ss_pred             ccccccccChHHhcC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            346788999998732 235678999999999999999999988654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.32  E-value=2.2e-13  Score=88.05  Aligned_cols=46  Identities=28%  Similarity=0.252  Sum_probs=39.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      +.+.|.-|.|||++  .+-.++..+||||+||++.|+.+|..-|+.-.
T Consensus       268 ~iVsTRHYRAPEVi--LgLGwS~pCDvWSiGCIL~ElytG~~LFqtHe  313 (415)
T KOG0671|consen  268 TIVSTRHYRAPEVI--LGLGWSQPCDVWSIGCILVELYTGETLFQTHE  313 (415)
T ss_pred             eeeeccccCCchhe--eccCcCCccCceeeeeEEEEeeccceecccCC
Confidence            45778899999999  56688999999999999999999998877644

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.32  E-value=9.3e-13  Score=92.66  Aligned_cols=97  Identities=19%  Similarity=0.210  Sum_probs=65.1

Q ss_pred             CCCccccccCccccc---cccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC
Q 040499            3 DARGTVSYIAPEVFC---RNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~---~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (133)
                      +.+||++|||||++.   .....|+..+|+||+|++..|+..|.+|+...-+..          .+ ....+.++  |.+
T Consensus       182 T~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmHPmr----------aL-F~IpRNPP--PkL  248 (953)
T KOG0587|consen  182 TFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMHPMR----------AL-FLIPRNPP--PKL  248 (953)
T ss_pred             CcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcchhh----------hh-ccCCCCCC--ccc
Confidence            578999999999982   123368889999999999999999999986543321          11 11111111  111


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .  ......+++..++..|+.+|..+||++.+++.
T Consensus       249 k--rp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  249 K--RPKKWSKKFNDFISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             c--chhhHHHHHHHHHHHHHhhccccCcchhhhcc
Confidence            1  11233345555566699999999999998875

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.32  E-value=2.6e-12  Score=85.30  Aligned_cols=47  Identities=26%  Similarity=0.346  Sum_probs=38.5

Q ss_pred             CCCccccccCcccccccc--CccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNF--GGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~--~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +.+||..|+|||++....  ..++.++|+||+|++++++++|..||...
T Consensus       202 ~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         202 TAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             cCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence            456999999999983221  23778999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.31  E-value=9.7e-13  Score=86.98  Aligned_cols=44  Identities=32%  Similarity=0.425  Sum_probs=39.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .+||..|+|||++  ....++.++|+||+|++++++++|..||...
T Consensus       196 ~~gt~~Y~APE~~--~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~  239 (360)
T cd05627         196 TVGTPDYIAPEVF--MQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (360)
T ss_pred             cCCCccccCHHHH--cCCCCCCcceeccccceeeecccCCCCCCCC
Confidence            5799999999998  5567889999999999999999999998754

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.31  E-value=4e-12  Score=79.52  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=53.9

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .++..|++||.+  ....++.++|+||+|++++++++|..++......           .    ........+...+.. 
T Consensus       143 ~~~~~y~aPE~~--~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~-----------~----~~~~~~~~~~~~~~~-  204 (237)
T cd05576         143 AVENMYCAPEVG--GISEETEACDWWSLGAILFELLTGKTLVECHPSG-----------I----NTHTTLNIPEWVSEE-  204 (237)
T ss_pred             CcCccccCCccc--CCCCCCchhhHHHHHHHHHHHHHCcchhhcCchh-----------c----ccccccCCcccCCHH-
Confidence            356679999987  4566788999999999999999998765432110           0    000011122333333 


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHH
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMS  110 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~  110 (133)
                            +..++..||+.||++|+++.
T Consensus       205 ------~~~li~~~l~~dp~~R~~~~  224 (237)
T cd05576         205 ------ARSLLQQLLQFNPTERLGAG  224 (237)
T ss_pred             ------HHHHHHHHccCCHHHhcCCC
Confidence                  34455559999999999963

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.31  E-value=7.8e-12  Score=83.11  Aligned_cols=47  Identities=26%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             CCCccccccCcccccccc--CccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNF--GGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~--~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +.+||+.|+|||++....  ..++.++|+||+|++++++++|..||...
T Consensus       202 ~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         202 TAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             CcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence            356999999999983221  23788999999999999999999999753

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.31  E-value=1.1e-11  Score=79.74  Aligned_cols=44  Identities=23%  Similarity=0.261  Sum_probs=36.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .|+..|++||++.+ ...++.++|+||+|++++++++|..|+...
T Consensus       164 ~~~~~y~~PE~~~~-~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~  207 (294)
T PLN00009        164 VVTLWYRAPEILLG-SRHYSTPVDIWSVGCIFAEMVNQKPLFPGD  207 (294)
T ss_pred             ceeecccCHHHHhC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            46788999998732 245788999999999999999999988643

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.30  E-value=1.1e-11  Score=81.05  Aligned_cols=45  Identities=18%  Similarity=0.234  Sum_probs=36.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..|+..|++||.+. ....++.++|+|++|++++++++|..|+...
T Consensus       165 ~~~~~~y~aPE~~~-~~~~~~~~~Dv~slG~il~el~tg~~~f~~~  209 (328)
T cd07856         165 YVSTRYYRAPEIML-TWQKYDVEVDIWSAGCIFAEMLEGKPLFPGK  209 (328)
T ss_pred             CcccccccCceeee-ccCCcCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            45778899999862 2246788999999999999999999888543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.29  E-value=1.5e-11  Score=78.99  Aligned_cols=97  Identities=13%  Similarity=0.186  Sum_probs=60.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..|+..|++||.+......++.++|+|++|++++++++|..|+.......  .   ... ....+... ....+...+. 
T Consensus       166 ~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~--~---~~~-~~~~~~~~-~~~~~~~~~~-  237 (290)
T cd05613         166 FCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKN--S---QAE-ISRRILKS-EPPYPQEMSA-  237 (290)
T ss_pred             ccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccc--c---HHH-HHHHhhcc-CCCCCccCCH-
Confidence            45788999999874322356788999999999999999999986432211  0   011 11111111 1112232333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                            .+..++..||+.||++|+     ++.+++.
T Consensus       238 ------~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         238 ------LAKDIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             ------HHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence                  344555569999999997     6777765

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.29  E-value=1.3e-11  Score=79.32  Aligned_cols=44  Identities=20%  Similarity=0.257  Sum_probs=35.9

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .++..|++||.+.+ ...++.++|+||+|++++++++|..||...
T Consensus       164 ~~~~~y~aPE~~~~-~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~  207 (291)
T cd07870         164 VVTLWYRPPDVLLG-ATDYSSALDIWGAGCIFIEMLQGQPAFPGV  207 (291)
T ss_pred             cccccccCCceeec-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCc
Confidence            46788999998732 234678899999999999999999998643

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=4.8e-12  Score=84.58  Aligned_cols=106  Identities=14%  Similarity=0.096  Sum_probs=70.9

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhc---CCc------
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLE---PGE------   72 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~------   72 (133)
                      |+.+-|.||.+||.+.+ ...|+..+|+||.||++.||+.|++.+.+....      ++...+...+-   +..      
T Consensus       277 T~rVvTLWYRpPELLLG-~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEv------eQl~kIfklcGSP~e~~W~~~kL  349 (560)
T KOG0600|consen  277 TSRVVTLWYRPPELLLG-ATSYGTAVDLWSVGCILAELFLGKPILQGRTEV------EQLHKIFKLCGSPTEDYWPVSKL  349 (560)
T ss_pred             ccceEEeeccChHHhcC-CcccccceeehhhhHHHHHHHcCCCCcCCccHH------HHHHHHHHHhCCCChhccccccC
Confidence            55667999999999854 358999999999999999999999998875432      11111111110   000      


Q ss_pred             ------cccc--cCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           73 ------DLKR--HGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        73 ------~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..  .....+.+..+....+.|....|..||++|.|+.+.+.
T Consensus       350 P~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~  399 (560)
T KOG0600|consen  350 PHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQ  399 (560)
T ss_pred             CcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhc
Confidence                  0000  11223344455556777777788999999999998875

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.28  E-value=3.4e-12  Score=84.94  Aligned_cols=94  Identities=16%  Similarity=0.279  Sum_probs=64.5

Q ss_pred             CCCccccccCcccccc-c-cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC-
Q 040499            3 DARGTVSYIAPEVFCR-N-FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL-   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~-~-~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (133)
                      ..+||+.++|||.+.. . ....+.+.|||++||++|.++.|+.||.+.....          +...+.+. +...|.. 
T Consensus       274 ~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~----------l~~KIvn~-pL~fP~~p  342 (576)
T KOG0585|consen  274 RTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDFELE----------LFDKIVND-PLEFPENP  342 (576)
T ss_pred             hcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccchHHH----------HHHHHhcC-cccCCCcc
Confidence            3579999999998832 1 1123468999999999999999999997654322          33333221 2222332 


Q ss_pred             -CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 -VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 -~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       ..+...+++++       .|.+||..|.++.+|..
T Consensus       343 e~~e~~kDli~~-------lL~KdP~~Ri~l~~ik~  371 (576)
T KOG0585|consen  343 EINEDLKDLIKR-------LLEKDPEQRITLPDIKL  371 (576)
T ss_pred             cccHHHHHHHHH-------HhhcChhheeehhhhee
Confidence             45666666666       44999999999998865

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.26  E-value=1.8e-11  Score=76.30  Aligned_cols=103  Identities=15%  Similarity=0.062  Sum_probs=64.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---c-------
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---L-------   74 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------   74 (133)
                      +-|.+|.|||.+.+ ...|...+|+||.||++.|++.+.+-+.+...      .++...+...+-....   +       
T Consensus       162 V~TRWYRAPELLfG-sr~Yg~~VDmWavGCI~AELllr~P~fpG~sD------idQL~~If~~LGTP~~~~WP~~~~lpd  234 (318)
T KOG0659|consen  162 VVTRWYRAPELLFG-SRQYGTGVDMWAVGCIFAELLLRVPFFPGDSD------IDQLSKIFRALGTPTPDQWPEMTSLPD  234 (318)
T ss_pred             eeeeeccChHHhcc-chhcCCcchhhhHHHHHHHHHccCCCCCCCch------HHHHHHHHHHcCCCCcccCcccccccc
Confidence            56889999998754 46899999999999999999998776654422      2222222221111100   0       


Q ss_pred             -----cccCC-CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           75 -----KRHGL-VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        75 -----~~~~~-~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                           ..|.. ....+.......++|+..++.+||.+|.+++|.+.
T Consensus       235 Y~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~  280 (318)
T KOG0659|consen  235 YVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALK  280 (318)
T ss_pred             HHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhc
Confidence                 00100 01122233344577777788999999999999875

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.25  E-value=1.4e-11  Score=79.17  Aligned_cols=44  Identities=23%  Similarity=0.253  Sum_probs=35.6

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .++..|+|||++.+ ...++.++|+||+|++++++++|..||...
T Consensus       164 ~~~~~~~aPE~~~~-~~~~~~~~Dv~slG~il~~l~~g~~~~~~~  207 (291)
T cd07844         164 VVTLWYRPPDVLLG-STEYSTSLDMWGVGCIFYEMATGRPLFPGS  207 (291)
T ss_pred             ccccccCCcHHhhc-CcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            35778999998732 235788999999999999999999988643

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.24  E-value=4.9e-11  Score=76.58  Aligned_cols=48  Identities=21%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             CCCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         1 ~~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +|..+-|.+|.|||.+.+ ...|+...|+||+||++.|++.+++-|.+.
T Consensus       234 ~T~lVVTLWYRaPELLLG-~~tyst~iDMWSvGCI~aE~l~~kPlf~G~  281 (419)
T KOG0663|consen  234 YTPLVVTLWYRAPELLLG-AKTYSTAVDMWSVGCIFAELLTQKPLFPGK  281 (419)
T ss_pred             CcceEEEeeecCHHHhcC-CcccCcchhhhhHHHHHHHHHhcCCCCCCC
Confidence            456677999999998854 468999999999999999999998877654

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.23  E-value=1.7e-11  Score=80.31  Aligned_cols=46  Identities=24%  Similarity=0.392  Sum_probs=37.7

Q ss_pred             CCccccccCccccccc---cCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRN---FGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~---~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .+||..|+|||++...   ...++.++|+||+|++++++++|+.||...
T Consensus       163 ~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  211 (331)
T cd05624         163 AVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             ccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCC
Confidence            4689999999987321   145778999999999999999999998643

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.23  E-value=5.8e-11  Score=78.13  Aligned_cols=45  Identities=20%  Similarity=0.214  Sum_probs=36.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..|+..|++||.+.. ...++.++|+||+|++++++++|..||...
T Consensus       175 ~~~~~~y~aPE~~~~-~~~~~~~~Di~slG~ll~~l~~g~~pf~~~  219 (343)
T cd07880         175 YVVTRWYRAPEVILN-WMHYTQTVDIWSVGCIMAEMLTGKPLFKGH  219 (343)
T ss_pred             cccCCcccCHHHHhC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            457888999998731 235788999999999999999999998643

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.19  E-value=4.1e-11  Score=82.00  Aligned_cols=43  Identities=21%  Similarity=0.133  Sum_probs=36.9

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      =+.+|.|||++  .+..|+.+.||||+||++.||++|.+-|.+..
T Consensus       350 QSRfYRAPEVI--LGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~n  392 (586)
T KOG0667|consen  350 QSRFYRAPEVI--LGLPYDTAIDMWSLGCILAELFTGEPLFPGDN  392 (586)
T ss_pred             eccccccchhh--ccCCCCCccceeehhhhHHhHhcCccccCCCC
Confidence            35789999999  67899999999999999999999976665443

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.14  E-value=7.7e-11  Score=75.62  Aligned_cols=111  Identities=17%  Similarity=0.094  Sum_probs=67.0

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---------
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---------   72 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   72 (133)
                      ++.++|.+|.|||++.+ ...|+...|+||+||++.|++++++-|.+...      .+....+...+....         
T Consensus       178 t~evvTlWYRaPEvLlG-s~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se------~~ql~~If~~lGtP~e~~Wp~v~~  250 (323)
T KOG0594|consen  178 TPEVVTLWYRAPEVLLG-STSYSTSVDIWSLGCIFAEMFTRRPLFPGDSE------IDQLFRIFRLLGTPNEKDWPGVSS  250 (323)
T ss_pred             cccEEEeeccCHHHhcC-CCcCCCCcchHhHHHHHHHHHhCCCCCCCCcH------HHHHHHHHHHcCCCCccCCCCccc
Confidence            45678999999999854 33699999999999999999998877765432      111111221111110         


Q ss_pred             ----cccccC-----CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           73 ----DLKRHG-----LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        73 ----~~~~~~-----~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                          ....+.     ...............+...|++++|.+|.|++..+.  ++...
T Consensus       251 ~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~  308 (323)
T KOG0594|consen  251 LPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSEL  308 (323)
T ss_pred             cccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccc
Confidence                000000     001100111123455555688999999999998886  35544

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.14  E-value=9.7e-11  Score=81.64  Aligned_cols=110  Identities=15%  Similarity=0.117  Sum_probs=55.5

Q ss_pred             CCCccccccCcccccccc--------------------CccccccchhhhhHHHHHHHccCCCCCCCCCCC----CCcch
Q 040499            3 DARGTVSYIAPEVFCRNF--------------------GGISHKSDVYGFGMTVLELVGVRNNTASGVTHT----SSTEM   58 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~--------------------~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~----~~~~~   58 (133)
                      .+.||+.|+|||.+....                    ..+..++||||+||+++|++++..+........    .....
T Consensus       316 ~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~~~~~~~~~l~~~~~  395 (566)
T PLN03225        316 EFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDY  395 (566)
T ss_pred             ccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCchHHHHHHHHHHhcCC
Confidence            356889999999652111                    123456799999999999997554432110000    00000


Q ss_pred             hhhHHHHhhhcCCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           59 YFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....|.... ............ +..........+|+..|++.||.+|||+.++++
T Consensus       396 ~~~~~~~~~-~~~~~~~~~~~~-~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~  449 (566)
T PLN03225        396 DLVAWRKLV-EPRASPDLRRGF-EVLDLDGGAGWELLKSMMRFKGRQRISAKAALA  449 (566)
T ss_pred             cHHHHHHhh-ccccchhhhhhh-hhccccchHHHHHHHHHccCCcccCCCHHHHhC
Confidence            111111110 000000000000 000000112335677799999999999999986

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.12  E-value=5.8e-11  Score=80.90  Aligned_cols=93  Identities=18%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             CCCCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      .+++|++.|.|||++.  +..| ...+|+|++|++++.++.|..||++.....          +..... .....++..+
T Consensus       212 qt~cgsppyAaPEl~~--g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~~lk~----------Lr~rvl-~gk~rIp~~m  278 (596)
T KOG0586|consen  212 QTFCGSPPYAAPELFN--GKKYDGPEVDIWSLGVVLYALVEGSLPFDGQNLKE----------LRPRVL-RGKYRIPFYM  278 (596)
T ss_pred             cccCCCCCccChHhhc--CcccCCcceehhhhhhhheeeeecccccCCccccc----------ccchhe-eeeeccccee
Confidence            4689999999999983  3334 478999999999999999999999765433          111111 1233557778


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.++.+++++++       -.+|.+|+++++++.
T Consensus       279 s~dce~lLrk~l-------vl~Pskr~~~dqim~  305 (596)
T KOG0586|consen  279 SCDCEDLLRKFL-------VLNPSKRGPCDQIMK  305 (596)
T ss_pred             echhHHHHHHhh-------ccCccccCCHHHhhh
Confidence            888888888865       889999999999975

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.12  E-value=7.5e-11  Score=76.09  Aligned_cols=46  Identities=17%  Similarity=0.187  Sum_probs=38.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVT   51 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~   51 (133)
                      .-|.+|.|||.+.+ ...|+.+.||||.|||+.||+.|++-|.+...
T Consensus       186 icSRyYRaPELifg-a~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~  231 (364)
T KOG0658|consen  186 ICSRYYRAPELIFG-ATEYTTSIDIWSAGCVMAELLKGQPLFPGDSS  231 (364)
T ss_pred             EEeccccCHHHHcC-ccccCceeEEhhhhHHHHHHhcCCcccCCCCH
Confidence            34778999998853 45899999999999999999999998877533

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.11  E-value=5.5e-11  Score=79.28  Aligned_cols=97  Identities=21%  Similarity=0.355  Sum_probs=65.1

Q ss_pred             CCCccccccCccccccc--cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHh-hhcCCccccc--c
Q 040499            3 DARGTVSYIAPEVFCRN--FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYK-LLEPGEDLKR--H   77 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~--~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~   77 (133)
                      ...||.||++||.+-..  -...++++||||+||+++..+.|+.||...-...        +.+.. -+.......+  -
T Consensus       639 QgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqsQQ--------dILqeNTIlkAtEVqFP~K  710 (775)
T KOG1151|consen  639 QGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQSQQ--------DILQENTILKATEVQFPPK  710 (775)
T ss_pred             ccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchhHH--------HHHhhhchhcceeccCCCC
Confidence            36799999999976211  2367899999999999999999999998653321        11111 1111112222  2


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..++....+++++       ||++.-.+|...-++..
T Consensus       711 PvVsseAkaFIRR-------CLaYRKeDR~DV~qLA~  740 (775)
T KOG1151|consen  711 PVVSSEAKAFIRR-------CLAYRKEDRIDVQQLAC  740 (775)
T ss_pred             CccCHHHHHHHHH-------HHHhhhhhhhhHHHHcc
Confidence            3356667777777       88999999988777653

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.06  E-value=3.4e-10  Score=76.74  Aligned_cols=106  Identities=15%  Similarity=0.239  Sum_probs=70.0

Q ss_pred             cccCccccccc--cC---ccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcC-CccccccCCCCh
Q 040499            9 SYIAPEVFCRN--FG---GISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEP-GEDLKRHGLVTE   82 (133)
Q Consensus         9 ~~~ape~~~~~--~~---~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   82 (133)
                      -|.|||.++..  ..   ..+.+.|+||||++++|++.+..||..........     . +...++. +..+..|.....
T Consensus       116 lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~~~-----e-ii~~~~~~~~~~~rP~i~~~  189 (484)
T KOG1023|consen  116 LWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVEDPD-----E-IILRVKKGGSNPFRPSIELL  189 (484)
T ss_pred             hccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCChH-----H-HHHHHHhcCCCCcCcchhhh
Confidence            48899988431  11   24677999999999999999999998654432111     1 2222222 222222332222


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .  .....++.++.+||..+|..||++++|-..++.+...
T Consensus       190 ~--e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  190 N--ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             h--hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccc
Confidence            1  3333688888999999999999999998888877654

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.05  E-value=4.9e-11  Score=83.88  Aligned_cols=93  Identities=15%  Similarity=0.229  Sum_probs=59.6

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHcc-CCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc-cCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGV-RNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR-HGL   79 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   79 (133)
                      ++..||-+|+|||.+  ....-...+|++|+||+++..++| ..||.......           ...+........ ...
T Consensus       672 s~~sGt~GW~APE~L--~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~-----------~NIl~~~~~L~~L~~~  738 (903)
T KOG1027|consen  672 SGGSGTSGWQAPEQL--REDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQ-----------ANILTGNYTLVHLEPL  738 (903)
T ss_pred             cCCCCcccccCHHHH--hccccCcccchhhcCceEEEEecCCccCCCchHHhh-----------hhhhcCccceeeeccC
Confidence            356799999999998  445556689999999999998885 77887543321           011111111111 111


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ......+++       .++++.+|..||++.+|+.
T Consensus       739 ~d~eA~dLI-------~~ml~~dP~~RPsa~~VL~  766 (903)
T KOG1027|consen  739 PDCEAKDLI-------SRMLNPDPQLRPSATDVLN  766 (903)
T ss_pred             chHHHHHHH-------HHhcCCCcccCCCHHHHhC
Confidence            111334444       4466999999999999974

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.04  E-value=4.2e-10  Score=74.41  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=64.1

Q ss_pred             CCCCccccccCccccccccCccc-cccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGIS-HKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~-~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ++|||++-|.+||++  ++..|. .-+|.||+|+++|.++.|..||++.....          +..-+..+... -|. .
T Consensus       210 qTFCGSPLYASPEIv--NG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~----------lvrQIs~GaYr-EP~-~  275 (668)
T KOG0611|consen  210 QTFCGSPLYASPEIV--NGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKR----------LVRQISRGAYR-EPE-T  275 (668)
T ss_pred             HHhcCCcccCCcccc--CCCCCCCCccchhhHHHHHHHHhhcccccCCchHHH----------HHHHhhccccc-CCC-C
Confidence            579999999999999  666665 56999999999999999999998764321          22223333221 122 2


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +....-+++-       ++..||++|.++.+|..
T Consensus       276 PSdA~gLIRw-------mLmVNP~RRATieDiAs  302 (668)
T KOG0611|consen  276 PSDASGLIRW-------MLMVNPERRATIEDIAS  302 (668)
T ss_pred             CchHHHHHHH-------HHhcCcccchhHHHHhh
Confidence            2233333333       55889999999999875

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.02  E-value=8.4e-10  Score=74.06  Aligned_cols=42  Identities=26%  Similarity=0.247  Sum_probs=36.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      +-|.-|.|||++  .+..|+..+||||++|+++||.||---|..
T Consensus       412 IQTRQYRapEVl--lGsgY~~~ADiWS~AC~~FELaTGDyLFeP  453 (590)
T KOG1290|consen  412 IQTRQYRAPEVL--LGSGYSTSADIWSTACMAFELATGDYLFEP  453 (590)
T ss_pred             hhhhhccCccee--ecCCCCCchhHHHHHHHHHHhhcCceeecC
Confidence            347789999999  678999999999999999999998765544

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.01  E-value=3.3e-10  Score=82.23  Aligned_cols=95  Identities=21%  Similarity=0.311  Sum_probs=66.0

Q ss_pred             CCCCccccccCcccccc--cc-CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHh-hhcCCcccccc
Q 040499            2 LDARGTVSYIAPEVFCR--NF-GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYK-LLEPGEDLKRH   77 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~--~~-~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   77 (133)
                      +..+||+-|++||+++.  .+ +.|..-+|+||+||++|||+.|..||+...-..          .+. +..-.....+|
T Consensus       234 ~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYadslve----------TY~KIm~hk~~l~FP  303 (1317)
T KOG0612|consen  234 SVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADSLVE----------TYGKIMNHKESLSFP  303 (1317)
T ss_pred             ccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHHHHH----------HHHHHhchhhhcCCC
Confidence            35789999999999842  22 578999999999999999999999998543211          111 11112222333


Q ss_pred             --CCCChhHHHHHHHHHHhhhhhccCCCCCCCC---HHHHHH
Q 040499           78 --GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSS---MSKAVE  114 (133)
Q Consensus        78 --~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps---~~~v~~  114 (133)
                        ..+++...+++.+++     |   +|+.|..   ++++..
T Consensus       304 ~~~~VSeeakdLI~~ll-----~---~~e~RLgrngiedik~  337 (1317)
T KOG0612|consen  304 DETDVSEEAKDLIEALL-----C---DREVRLGRNGIEDIKN  337 (1317)
T ss_pred             cccccCHHHHHHHHHHh-----c---ChhhhcccccHHHHHh
Confidence              447888889998876     4   4556665   888865

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.97  E-value=6.7e-10  Score=77.00  Aligned_cols=99  Identities=23%  Similarity=0.278  Sum_probs=64.0

Q ss_pred             CCCccccccCccccc-cccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFC-RNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~-~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ++.||++|||||+-. +..+.|+.++|+|+.|+...|+...++|....-...    ..+  ......-.......+..++
T Consensus       171 sfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr----~l~--LmTkS~~qpp~lkDk~kws  244 (829)
T KOG0576|consen  171 SFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMR----ALF--LMTKSGFQPPTLKDKTKWS  244 (829)
T ss_pred             cccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHH----HHH--HhhccCCCCCcccCCccch
Confidence            578999999999862 234578999999999999999988777754322211    000  0001111111112234456


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.+.++++.       |+.++|++||+++.++.
T Consensus       245 ~~fh~fvK~-------altknpKkRptaeklL~  270 (829)
T KOG0576|consen  245 EFFHNFVKG-------ALTKNPKKRPTAEKLLQ  270 (829)
T ss_pred             HHHHHHHHH-------HhcCCCccCCChhhhee
Confidence            666666665       88999999999988764

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.96  E-value=1.3e-09  Score=75.70  Aligned_cols=81  Identities=22%  Similarity=0.348  Sum_probs=55.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||++  ....|+..+|+|+.||+++||+-|+.||.......  .......|...+     ....-...+.
T Consensus       830 slvgt~nyiapevl--~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~--tq~kv~nw~~~l-----~~~~~~~ls~  900 (1034)
T KOG0608|consen  830 SLVGTPNYIAPEVL--ARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGE--TQYKVINWRNFL-----HIPYQGNLSK  900 (1034)
T ss_pred             hhcCCCcccChHHh--cccCccccchhhHhhHHHHHHhhCCCCccCCCCCc--ceeeeeehhhcc-----ccccccccCH
Confidence            46899999999999  56688999999999999999999999998765543  222233332211     1111223456


Q ss_pred             hHHHHHHHHH
Q 040499           83 EEEVIVRKMI   92 (133)
Q Consensus        83 ~~~~~~~~~~   92 (133)
                      ++.+++.+++
T Consensus       901 e~~~li~kLc  910 (1034)
T KOG0608|consen  901 EALDLIQKLC  910 (1034)
T ss_pred             HHHHHHHHHh
Confidence            6666666654

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=98.88  E-value=3.3e-09  Score=68.27  Aligned_cols=105  Identities=11%  Similarity=0.228  Sum_probs=67.1

Q ss_pred             CCCCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCC-C---CCcc-hhhhHHHHhhhcCCcc
Q 040499            2 LDARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTH-T---SSTE-MYFPDWFYKLLEPGED   73 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~-~---~~~~-~~~~~~~~~~~~~~~~   73 (133)
                      .+.+|+.-|||||++..   ..--|+.++|.||+|+++|-|++|.+||.+.-.. .   ..+. ..=...+...+.++..
T Consensus       244 ~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkY  323 (463)
T KOG0607|consen  244 LTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKY  323 (463)
T ss_pred             cCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCC
Confidence            46789999999998732   2235888999999999999999999999765321 1   1111 1111223333344332


Q ss_pred             ccccC----CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           74 LKRHG----LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        74 ~~~~~----~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       ..|+    -++....+++..++       ..|+.+|.++.++++
T Consensus       324 -eFPdkdWahIS~eakdlisnLl-------vrda~~rlsa~~vln  360 (463)
T KOG0607|consen  324 -EFPDKDWAHISSEAKDLISNLL-------VRDAKQRLSAAQVLN  360 (463)
T ss_pred             -cCChhhhHHhhHHHHHHHHHHH-------hccHHhhhhhhhccC
Confidence             1222    13444555555544       799999999999886

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.83  E-value=9e-09  Score=64.37  Aligned_cols=106  Identities=10%  Similarity=0.062  Sum_probs=64.5

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc----------
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL----------   74 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   74 (133)
                      +-|.+|..||.+.+ ...|..+.|+|..||++.|+.++.+.+++.....   ....+..+...+.....+          
T Consensus       189 vvTLwYrppEllLG-~r~yg~~iDiWgAgCimaeMwtrspimqgnteqq---ql~~Is~LcGs~tkevWP~~d~lpL~~s  264 (376)
T KOG0669|consen  189 VVTLWYRPPELLLG-DREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQQ---QLHLISQLCGSITKEVWPNVDNLPLYQS  264 (376)
T ss_pred             eeeeecCCHHHhhc-ccccCCcchhHhHHHHHHHHHccCccccCChHHH---HHHHHHHHhccCCcccCCCcccchHHHh
Confidence            44899999998853 5688999999999999999999988877543321   111111111111111110          


Q ss_pred             ----cccCCCChhHHHHHH------HHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           75 ----KRHGLVTEEEEVIVR------KMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        75 ----~~~~~~~~~~~~~~~------~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                          ..+...-....+..+      ..+.|+...+..||.+|+.++++++
T Consensus       265 ie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~aln  314 (376)
T KOG0669|consen  265 IELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQALN  314 (376)
T ss_pred             ccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhhhc
Confidence                011111111122222      4556666677999999999999875

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=98.78  E-value=1.8e-08  Score=64.75  Aligned_cols=46  Identities=22%  Similarity=0.227  Sum_probs=38.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      .+-|++|.|||.+.+ ...|+...|+|++||++.|+++.++-|.+..
T Consensus       199 VVVTiWYRAPELLLG-a~hYT~AiDvWAiGCIfaElLtl~PlF~g~E  244 (438)
T KOG0666|consen  199 VVVTIWYRAPELLLG-ARHYTKAIDVWAIGCIFAELLTLEPLFKGRE  244 (438)
T ss_pred             eEEEEEecChHHhcc-cccccchhhhHHHHHHHHHHHccCccccchh
Confidence            456899999998853 4589999999999999999999888776543

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.74  E-value=2.6e-08  Score=63.90  Aligned_cols=45  Identities=27%  Similarity=0.205  Sum_probs=38.1

Q ss_pred             CCCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCC
Q 040499            1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTA   47 (133)
Q Consensus         1 ~~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~   47 (133)
                      ||.++.|..|.|||++.+  -.|...+||||.||++-||+.|.--|.
T Consensus       174 mtpyVvtRyyrapevil~--~~~ke~vdiwSvGci~gEli~~~Vlf~  218 (369)
T KOG0665|consen  174 MTPYVVTRYYRAPEVILG--MGYKENVDIWSVGCIMGELILGTVLFP  218 (369)
T ss_pred             cCchhheeeccCchheec--cCCcccchhhhhhhHHHHHhhceEEec
Confidence            567788999999999943  458999999999999999998876554

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=98.74  E-value=5.3e-09  Score=72.83  Aligned_cols=51  Identities=22%  Similarity=0.266  Sum_probs=44.0

Q ss_pred             CCCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCC
Q 040499            1 MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTH   52 (133)
Q Consensus         1 ~~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~   52 (133)
                      +++++||.-|++||.+.+ .+.|+..+|.|||||++|+..+|..||......
T Consensus       180 ~~S~vGT~~YLhPel~E~-q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~p  230 (732)
T KOG4250|consen  180 FTSLVGTEEYLHPELYER-QKKYTATVDLWSFGVTLYECATGELPFIPFGGP  230 (732)
T ss_pred             eeeecCchhhcChHHHhh-ccCcCceeehhhhhhHHHHHhccCCCCCcCCCc
Confidence            467899999999999821 478999999999999999999999999876544

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=98.73  E-value=5.1e-09  Score=71.18  Aligned_cols=41  Identities=22%  Similarity=0.137  Sum_probs=35.6

Q ss_pred             cccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            7 TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         7 t~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +.+|.|||++  .+..|+...|+||+||.+||+.+|+.-|.+.
T Consensus       598 SRFYRaPEIi--LG~~yd~~iD~WSvgctLYElYtGkIlFpG~  638 (752)
T KOG0670|consen  598 SRFYRAPEII--LGLPYDYPIDTWSVGCTLYELYTGKILFPGR  638 (752)
T ss_pred             HHhccCccee--ecCcccCCccceeeceeeEEeeccceecCCC
Confidence            4579999999  6779999999999999999999998776543

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=98.71  E-value=1.4e-08  Score=68.70  Aligned_cols=38  Identities=32%  Similarity=0.509  Sum_probs=34.6

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHc
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG   41 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~   41 (133)
                      +.-+||..||+||-+  .+..|+.++|||++|++++|++.
T Consensus       420 t~~~gt~~YmsPEQi--~g~~y~~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  420 TQQVGTLLYMSPEQI--RGQQYSEKVDIYALGLILAELLI  457 (516)
T ss_pred             hhcccccccCCHHHH--hhhhhhhhcchhhHHHHHHHHHH
Confidence            456799999999998  67899999999999999999986

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=98.67  E-value=3.9e-08  Score=59.70  Aligned_cols=61  Identities=31%  Similarity=0.425  Sum_probs=48.8

Q ss_pred             CCccccccCccccccccC-ccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFG-GISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~-~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+...|++||..  ... ..+.+.|+|++|++++++                                           
T Consensus       153 ~~~~~~~~~pe~~--~~~~~~~~~~D~~~lg~~~~~l-------------------------------------------  187 (215)
T cd00180         153 IVGTPAYMAPEVL--LGKGYYSEKSDIWSLGVILYEL-------------------------------------------  187 (215)
T ss_pred             ccCCCCccChhHh--cccCCCCchhhhHHHHHHHHHH-------------------------------------------
Confidence            3466789999987  333 677889999999999988                                           


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                            ..+..++..|++.+|++||++.++++.
T Consensus       188 ------~~~~~~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         188 ------PELKDLIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             ------HHHHHHHHHHhhCCcccCcCHHHHhhC
Confidence                  245556666999999999999998864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=1.7e-09  Score=73.78  Aligned_cols=93  Identities=17%  Similarity=0.199  Sum_probs=60.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....|+...|+||+|+++|-.++|.-||.....-        -+ ..+...-..++..=..++.
T Consensus       725 sVVGTPAYLaPEVL--rnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdI--------nd-QIQNAaFMyPp~PW~eis~  793 (888)
T KOG4236|consen  725 SVVGTPAYLAPEVL--RNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDI--------ND-QIQNAAFMYPPNPWSEISP  793 (888)
T ss_pred             hhcCCccccCHHHH--hhccccccccceeeeEEEEEEecccccCCCccch--------hH-HhhccccccCCCchhhcCH
Confidence            56899999999999  5678999999999999999999999998654221        00 1111111111111122345


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAV  113 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~  113 (133)
                      ...+++..++       +..-.+|.+.++-+
T Consensus       794 ~AidlIn~LL-------qVkm~kRysvdk~l  817 (888)
T KOG4236|consen  794 EAIDLINNLL-------QVKMRKRYSVDKSL  817 (888)
T ss_pred             HHHHHHHHHH-------HHHHHHhcchHhhc
Confidence            5555555544       66677888877654

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=98.63  E-value=1.1e-08  Score=67.37  Aligned_cols=46  Identities=26%  Similarity=0.366  Sum_probs=37.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      ..||++|.|||++.. ...=+.++||||.|++++.++++..||....
T Consensus       237 rAGT~GfRaPEvL~k-~~~QttaiDiws~GVI~Lslls~~~PFf~a~  282 (418)
T KOG1167|consen  237 RAGTPGFRAPEVLFR-CPRQTTAIDIWSAGVILLSLLSRRYPFFKAK  282 (418)
T ss_pred             cCCCCCCCchHHHhh-ccCcCCccceeeccceeehhhccccccccCc
Confidence            469999999999853 2344678999999999999999998875443

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=5.6e-08  Score=68.39  Aligned_cols=110  Identities=15%  Similarity=0.157  Sum_probs=68.7

Q ss_pred             CCCCccccccCccccccccCccc-cccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGIS-HKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~-~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ..++|+-.|+|||++  ....|. ...||||.|+++..|..++.||........  .  +    ... ............
T Consensus       482 ~g~~gS~pY~apE~~--~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~--~--~----~~~-~~~~~~~~~~~~  550 (601)
T KOG0590|consen  482 SGIVGSDPYLAPEVL--TGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDN--S--F----KTN-NYSDQRNIFEGP  550 (601)
T ss_pred             cCcccCCcCcCcccc--cccccCcchhhhhhccceEEEEecCCCcccccccccc--c--h----hhh-ccccccccccCh
Confidence            357899999999998  345555 568999999999999999888865433211  0  0    000 000000111111


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccC
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEA  122 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~  122 (133)
                      ......+......++.+.++.||.+|.++++|++  +++.+...
T Consensus       551 ~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~~c  594 (601)
T KOG0590|consen  551 NRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIECC  594 (601)
T ss_pred             HHHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcceE
Confidence            2223344445556666678999999999999986  66655443

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=98.50  E-value=6.8e-08  Score=58.85  Aligned_cols=46  Identities=37%  Similarity=0.456  Sum_probs=37.4

Q ss_pred             CccccccCccccc--cccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            5 RGTVSYIAPEVFC--RNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         5 ~gt~~~~ape~~~--~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      .|.-.|||||.+.  .+...|+.++||||+|+.+.|+.++.-||..-.
T Consensus       209 aGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~  256 (282)
T KOG0984|consen  209 AGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWG  256 (282)
T ss_pred             cCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccC
Confidence            3556799999882  233479999999999999999999999987543

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.43  E-value=1.7e-07  Score=59.52  Aligned_cols=48  Identities=19%  Similarity=0.172  Sum_probs=39.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVT   51 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~   51 (133)
                      ..+-|-+|.|||.+.+ ...|+...||||+||++-|++.++.-|+...+
T Consensus       216 qEVVTQYYRAPEiLMG-aRhYs~AvDiWSVGCIFaELLgRrILFQAq~P  263 (449)
T KOG0664|consen  216 HEVVTQYYRAPELLMG-ARRYTGAVDIWSVGCIFAELLQRKILFQAAGP  263 (449)
T ss_pred             HHHHHHHhccHHHhhc-chhhcCccceehhhHHHHHHHhhhhhhhccCh
Confidence            3445778999999854 46899999999999999999988877776544

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=98.41  E-value=1.2e-06  Score=60.70  Aligned_cols=101  Identities=16%  Similarity=0.112  Sum_probs=52.6

Q ss_pred             ccccccCccccccccC--------------------ccccccchhhhhHHHHHHHccCC-CCCCCCCCC---CCcchhhh
Q 040499            6 GTVSYIAPEVFCRNFG--------------------GISHKSDVYGFGMTVLELVGVRN-NTASGVTHT---SSTEMYFP   61 (133)
Q Consensus         6 gt~~~~ape~~~~~~~--------------------~~~~~~dv~s~g~~~~~l~~~~~-p~~~~~~~~---~~~~~~~~   61 (133)
                      +|+.|++||.+.....                    ....+.|+||+|+++++++.+.. |+.......   ........
T Consensus       372 ~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~  451 (507)
T PLN03224        372 LDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLN  451 (507)
T ss_pred             CCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHH
Confidence            3678999998732110                    11134799999999999998765 554321110   00011111


Q ss_pred             HHHHhhhcCCccccccCCCChhHHHHHHHHHHhhhhhccCCC---CCCCCHHHHHH
Q 040499           62 DWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNP---SDRSSMSKAVE  114 (133)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p---~~Rps~~~v~~  114 (133)
                      .|.... ............++...+++.++       +..++   .+|+|+++++.
T Consensus       452 ~~r~~~-~~~~~~~~~d~~s~~~~dLi~~L-------L~~~~~~~~~RlSa~eaL~  499 (507)
T PLN03224        452 RWRMYK-GQKYDFSLLDRNKEAGWDLACKL-------ITKRDQANRGRLSVGQALS  499 (507)
T ss_pred             HHHhhc-ccCCCcccccccChHHHHHHHHH-------hccCCCCcccCCCHHHHhC
Confidence            221110 00111111223455555566654       45544   78999999875

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.33  E-value=6.4e-07  Score=65.56  Aligned_cols=88  Identities=20%  Similarity=0.269  Sum_probs=59.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcC-CccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEP-GEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (133)
                      ..+||+.|.|||++  ....|...+|+|++|++++|.+-|+-||.+......         +...+.. ...+....-.+
T Consensus       217 qvcgTPeyiaPeVi--lrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeel---------fg~visd~i~wpE~dea~p  285 (1205)
T KOG0606|consen  217 QVCGTPEYIAPEVI--LRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEEL---------FGQVISDDIEWPEEDEALP  285 (1205)
T ss_pred             cccCCccccChhhh--hhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHH---------HhhhhhhhccccccCcCCC
Confidence            35899999999999  556799999999999999999999999877633221         1111111 11111223345


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSS  108 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps  108 (133)
                      .+.++++..|+       +.+|..|..
T Consensus       286 ~Ea~dli~~LL-------~qnp~~Rlg  305 (1205)
T KOG0606|consen  286 PEAQDLIEQLL-------RQNPLCRLG  305 (1205)
T ss_pred             HHHHHHHHHHH-------HhChHhhcc
Confidence            66667777755       778888853

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.28  E-value=3e-06  Score=56.59  Aligned_cols=91  Identities=19%  Similarity=0.158  Sum_probs=63.7

Q ss_pred             ccccccCcccccc---ccCc-cccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            6 GTVSYIAPEVFCR---NFGG-ISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         6 gt~~~~ape~~~~---~~~~-~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      |.-..||||+...   .... .-.++|.|+.|.+.||++....||+..+....         -...+.+..-+..|+.++
T Consensus       413 GNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L---------~~r~Yqe~qLPalp~~vp  483 (598)
T KOG4158|consen  413 GNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLL---------DTRTYQESQLPALPSRVP  483 (598)
T ss_pred             CcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchhee---------chhhhhhhhCCCCcccCC
Confidence            6677899998621   1111 22589999999999999999999987544321         111244455666677788


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKA  112 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v  112 (133)
                      ....+++..++       +.||++|++..-.
T Consensus       484 p~~rqlV~~lL-------~r~pskRvsp~iA  507 (598)
T KOG4158|consen  484 PVARQLVFDLL-------KRDPSKRVSPNIA  507 (598)
T ss_pred             hHHHHHHHHHh-------cCCccccCCccHH
Confidence            87777777755       9999999986543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.17  E-value=1.3e-06  Score=64.48  Aligned_cols=88  Identities=23%  Similarity=0.246  Sum_probs=51.8

Q ss_pred             cccccCcccccccc---------CccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCc--cc
Q 040499            7 TVSYIAPEVFCRNF---------GGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGE--DL   74 (133)
Q Consensus         7 t~~~~ape~~~~~~---------~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   74 (133)
                      -.+|+|||.+-...         ..+..+=||+|.||++.|++. |.++|.-.              ..-.++.+.  .+
T Consensus       190 RtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~LS--------------QL~aYr~~~~~~~  255 (1431)
T KOG1240|consen  190 RTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFTLS--------------QLLAYRSGNADDP  255 (1431)
T ss_pred             eeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCcccHH--------------HHHhHhccCccCH
Confidence            35799999872100         125667899999999999976 56666411              000011110  00


Q ss_pred             -cccCCC-ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHH
Q 040499           75 -KRHGLV-TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM  115 (133)
Q Consensus        75 -~~~~~~-~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~  115 (133)
                       ..-+.+ ..       .+.+|++.+++.||++|.++++.++.
T Consensus       256 e~~Le~Ied~-------~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  256 EQLLEKIEDV-------SLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HHHHHhCcCc-------cHHHHHHHHHccCchhccCHHHHHHh
Confidence             000111 12       34445555779999999999999876

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.12  E-value=1.8e-06  Score=59.95  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=36.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      |||.-|||||++  +  .....+|.|++|++.+++++|..||..
T Consensus       154 cgt~eymApEI~--~--gh~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  154 CGTYEYRAPEII--N--GHLSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             ccchhhhhhHhh--h--ccCCcccchhhhhhHHHHhhCCCCCch
Confidence            789999999998  3  457789999999999999999999876

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=98.08  E-value=3.2e-06  Score=52.03  Aligned_cols=44  Identities=27%  Similarity=0.448  Sum_probs=36.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..++..|++||.+. ....++.++|+|++|++++++++|+.||..
T Consensus       159 ~~~~~~~~~pe~~~-~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      159 VKGTPFYLAPEVLL-GGKGYGEAVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             eeccCCcCCHhHhc-CCCCCCchhhHHHHHHHHHHHHHCCCCccc
Confidence            45677899999863 345667799999999999999999999965

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.94  E-value=1e-05  Score=50.43  Aligned_cols=43  Identities=12%  Similarity=0.288  Sum_probs=34.0

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .+..|-.||.+- ....|+.+.|+|||||++.+++..+.||...
T Consensus       194 ASRyfKGPELLV-dy~~YDYSLD~WS~GcmlA~miFrkepFFhG  236 (338)
T KOG0668|consen  194 ASRYFKGPELLV-DYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  236 (338)
T ss_pred             ehhhcCCchhee-echhccccHHHHHHHHHHHHHHhccCcccCC
Confidence            455677888652 3457889999999999999999988887654

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=97.87  E-value=2.5e-06  Score=59.22  Aligned_cols=44  Identities=27%  Similarity=0.339  Sum_probs=36.5

Q ss_pred             CCCccccccCccccccccCccc-cccchhhhhHHHHHHHccCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGIS-HKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~-~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      .++||..|.|||++.  +..|- ...|||++|+++|.++....||..
T Consensus       727 ~f~gtv~~aapevl~--g~~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  727 VFVGTVDYAAPEVLG--GEKYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             eeeeeccccchhhhC--CCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence            578999999999983  44444 568999999999999998888863

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.82  E-value=7.6e-05  Score=44.99  Aligned_cols=42  Identities=21%  Similarity=0.199  Sum_probs=33.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNT   46 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~   46 (133)
                      .+-|.+|.+|.++.+ -.-|+...|+||.||++.|+.....|.
T Consensus       161 evvtlwyrppdvlfg-akly~tsidmwsagcifaelanagrpl  202 (292)
T KOG0662|consen  161 EVVTLWYRPPDVLFG-AKLYSTSIDMWSAGCIFAELANAGRPL  202 (292)
T ss_pred             eeeeeeccCcceeee-eehhccchHhhhcchHHHHHhhcCCCC
Confidence            456889999998843 357889999999999999998755554

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=97.46  E-value=8.7e-05  Score=47.49  Aligned_cols=92  Identities=14%  Similarity=0.179  Sum_probs=51.5

Q ss_pred             ccccCccccccc---cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC---CCC
Q 040499            8 VSYIAPEVFCRN---FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG---LVT   81 (133)
Q Consensus         8 ~~~~ape~~~~~---~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~   81 (133)
                      ..|-+||.+...   .-......|+|.||++++.+++|+.|++.....+ .....+..|.     .+..+..|.   ..+
T Consensus       184 ~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQka~~~d-~~Y~~~~~w~-----~rk~~~~P~~F~~fs  257 (378)
T KOG1345|consen  184 NNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQKASIMD-KPYWEWEQWL-----KRKNPALPKKFNPFS  257 (378)
T ss_pred             cccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchhhhccC-chHHHHHHHh-----cccCccCchhhcccC
Confidence            346778765211   1134567999999999999999999998432221 0112222332     222223333   334


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKA  112 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v  112 (133)
                      +....+.++       -+..++++|=-..++
T Consensus       258 ~~a~r~Fkk-------~lt~~~~drcki~~~  281 (378)
T KOG1345|consen  258 EKALRLFKK-------SLTPRFKDRCKIWTA  281 (378)
T ss_pred             HHHHHHHHH-------hcCCcccccchhHHH
Confidence            444444444       558888888444443

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.42  E-value=0.0003  Score=52.40  Aligned_cols=88  Identities=14%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--cccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--KRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   81 (133)
                      .+||..|.+||..  .+......+|+|++|+++++.++|..|+.......          ..+.+..+..+  ..+....
T Consensus       995 ~~~t~~~laPe~~--lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~tpq~----------~f~ni~~~~~~~p~g~~~~s 1062 (1205)
T KOG0606|consen  995 VVGTPDYLAPEIL--LGRRHGSAADWWSSGVCLFEVLTGIPPFNAETPQQ----------IFENILNRDIPWPEGPEEGS 1062 (1205)
T ss_pred             ccCCCcccCCccc--ccccCCCcchhhhhhhhhhhhhcCCCCCCCcchhh----------hhhccccCCCCCCCCccccC
Confidence            5699999999988  55677888999999999999999999987655433          22222222222  2244445


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMS  110 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~  110 (133)
                      ....+....++       ..++.+|..+.
T Consensus      1063 ~~aq~~~~~ll-------~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1063 YEAQDLINRLL-------TEEPTQRLGAK 1084 (1205)
T ss_pred             hhhhhhhhhhh-------ccCchhccCcc
Confidence            55555555533       77777887654

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=97.38  E-value=0.0012  Score=42.53  Aligned_cols=48  Identities=29%  Similarity=0.361  Sum_probs=38.1

Q ss_pred             CCCCccccccCcccccccc-CccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNF-GGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~-~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ....||..|++||.+.... ..+....|+|++|+++++++.+..|+...
T Consensus       166 ~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~  214 (384)
T COG0515         166 STSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLPPFEGE  214 (384)
T ss_pred             cccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            3467999999999883211 57788999999999999999998885443

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.22  E-value=0.00023  Score=46.10  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=29.8

Q ss_pred             cccccCcccccc------ccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            7 TVSYIAPEVFCR------NFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         7 t~~~~ape~~~~------~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +..|.+||....      ..-.++.+.|.|++|++++.+..+..|+...
T Consensus       205 ~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~  253 (288)
T PF14531_consen  205 PVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPFGLS  253 (288)
T ss_dssp             -TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-STCCC
T ss_pred             CcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCCCCC
Confidence            355778886521      1125778899999999999999999998754

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=96.25  E-value=0.0024  Score=45.74  Aligned_cols=96  Identities=15%  Similarity=0.150  Sum_probs=57.3

Q ss_pred             CCc-cccccCcccccccc-CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            4 ARG-TVSYIAPEVFCRNF-GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         4 ~~g-t~~~~ape~~~~~~-~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      .+| ++.|+|||..  .+ .......|+||.|+++..++++..|+.......    .....|....  .......-..+.
T Consensus       188 ~~g~s~~y~a~E~~--~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~  259 (601)
T KOG0590|consen  188 RCGSSPPYGAPEHL--SGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSRKD----GRYSSWKSNK--GRFTQLPWNSIS  259 (601)
T ss_pred             ccCCCCCCCCcccc--cchhhcCCCcccccccccccccccCCCCcccccccc----ccceeecccc--cccccCccccCC
Confidence            467 8999999987  33 244577899999999999999999876543322    1111111110  000011112233


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .......       ..++..+++.|.+.+++..
T Consensus       260 ~~~~~~l-------~k~l~~~~~~r~s~~~~~~  285 (601)
T KOG0590|consen  260 DQAHDLL-------HKILKENPSNRLSIEELKL  285 (601)
T ss_pred             hhhhhcc-------cccccCCchhccccccccc
Confidence            3333333       3366789999999888753

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=96.25  E-value=0.053  Score=35.90  Aligned_cols=104  Identities=20%  Similarity=0.118  Sum_probs=62.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      +.||..|.++.+.  .+...+.+-|+||++.++.++..+..|+.......  ....+..........    ......+..
T Consensus       197 ~rGT~ry~S~~~H--~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~  268 (322)
T KOG1164|consen  197 FRGTLRYASINVH--LGIEQGRRDDLESLFYMLLELLKGSLPWEALEMTD--LKSKFEKDPRKLLTD----RFGDLKPEE  268 (322)
T ss_pred             CCCccccccHHHh--CCCccCCchhhhhHHHHHHHHhcCCCCCccccccc--hHHHHHHHhhhhccc----cccCCChHH
Confidence            5699999999876  55677889999999999999999999986554322  111111111111000    011112222


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .......       +-..+...+|....+...+.+....
T Consensus       269 ~~~~~~~-------~~~~~~~~~Pdy~~~~~~l~~~~~~  300 (322)
T KOG1164|consen  269 FAKILEY-------IDSLDYEDKPDYEKLAELLKDVFDS  300 (322)
T ss_pred             HHHHHHH-------hhccCCcCCCCHHHHHHHHHHHHHh
Confidence            2222222       3357788999999888877655443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.34  E-value=0.0072  Score=43.42  Aligned_cols=90  Identities=14%  Similarity=0.193  Sum_probs=53.2

Q ss_pred             ccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhHHH
Q 040499            8 VSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEV   86 (133)
Q Consensus         8 ~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (133)
                      .-|.|||++  .+...+..+|++|+|+..+-+.. |+.-+...+...       .........+..........+.+..+
T Consensus       173 ~~f~apE~~--~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~-------~~~~~~~~~~~~~~~~s~~~p~el~~  243 (700)
T KOG2137|consen  173 LNFLAPEYL--LGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLL-------SYSFSRNLLNAGAFGYSNNLPSELRE  243 (700)
T ss_pred             cccccchhh--ccccccccccceeeeeEEEEEecCCcchhhccCCcc-------hhhhhhcccccccccccccCcHHHHH
Confidence            468999998  45566788999999998887774 433333322111       00011111111111223445666777


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040499           87 IVRKMIIVRLWCIQTNPSDRSSMSKAV  113 (133)
Q Consensus        87 ~~~~~~~l~~~cl~~~p~~Rps~~~v~  113 (133)
                      .+++++       ..+...||++..+.
T Consensus       244 ~l~k~l-------~~~~~~rp~~~~l~  263 (700)
T KOG2137|consen  244 SLKKLL-------NGDSAVRPTLDLLL  263 (700)
T ss_pred             HHHHHh-------cCCcccCcchhhhh
Confidence            777754       88999999776654

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=95.13  E-value=0.057  Score=36.14  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=25.3

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHccC
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR   43 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~   43 (133)
                      |-++|-+|+.-  ..-..+-.+|||+||...+++..+.
T Consensus       244 ~~~g~~a~~sg--~~tn~~~a~dIy~fgmcAlemailE  279 (458)
T KOG1266|consen  244 SLPGFSAPESG--TTTNTTGASDIYKFGMCALEMAILE  279 (458)
T ss_pred             cCCccccCCcC--cccccccchhhhhhhHHHHHHHHhe
Confidence            45677777753  3335566899999998888876543

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=93.82  E-value=0.46  Score=33.27  Aligned_cols=48  Identities=15%  Similarity=0.142  Sum_probs=33.8

Q ss_pred             CCccccccCccccc-c--ccCccccccchhhhhHHHHHHHcc-CCCCCCCCC
Q 040499            4 ARGTVSYIAPEVFC-R--NFGGISHKSDVYGFGMTVLELVGV-RNNTASGVT   51 (133)
Q Consensus         4 ~~gt~~~~ape~~~-~--~~~~~~~~~dv~s~g~~~~~l~~~-~~p~~~~~~   51 (133)
                      .+|..-|..||.-. .  .+-.-+...|.+.+++++++++.| ..||.+...
T Consensus       176 pVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~~  227 (637)
T COG4248         176 PVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIPL  227 (637)
T ss_pred             ccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCcccc
Confidence            46777899999641 0  112334678999999999998765 788877543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=92.00  E-value=0.41  Score=32.30  Aligned_cols=49  Identities=14%  Similarity=0.091  Sum_probs=38.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHT   53 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~   53 (133)
                      +..||..||+-...  .+..-+..-|.=++|-++...+.|..||++.....
T Consensus       195 SLsGTARYMSINTH--lGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~t  243 (449)
T KOG1165|consen  195 SLSGTARYMSINTH--LGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADT  243 (449)
T ss_pred             ccccceeeeEeecc--ccchhhhhhhHHHhhhhhhhhccCCCccccccCcc
Confidence            46789999986644  34444667788899999999999999999987765

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=85.72  E-value=0.53  Score=33.86  Aligned_cols=19  Identities=42%  Similarity=0.527  Sum_probs=15.8

Q ss_pred             cccchhhhhHHHHHHHccC
Q 040499           25 HKSDVYGFGMTVLELVGVR   43 (133)
Q Consensus        25 ~~~dv~s~g~~~~~l~~~~   43 (133)
                      .|+|||++|.++.++.-|.
T Consensus       110 pKsdVwsl~~i~~el~L~~  128 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGI  128 (725)
T ss_pred             cchhhhhHHHHHHHHHHhh
Confidence            5899999999998876543

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=82.71  E-value=2.4  Score=30.38  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=29.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRN   44 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~   44 (133)
                      -|...|++||..   .+.+....|++++|.+..+...+..
T Consensus       289 ~~~~~Y~~ke~~---~~l~~~~~di~sl~ev~l~~~l~~~  325 (524)
T KOG0601|consen  289 EGDCIYAAKELL---NGLATFASDIFSLGEVILEAILGSH  325 (524)
T ss_pred             CCCceEeChhhh---ccccchHhhhcchhhhhHhhHhhcc
Confidence            356679999986   4577889999999999888766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		2e-10
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		8e-10
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-04
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 13/120 (10%)
Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV-GVRNNTASGVTHTSSTEMYFPDW 63
           RGT+ +IAPE    + G  S K+DV+G+G+ +LEL+ G R    + +   +  ++   DW
Sbjct: 204 RGTIGHIAPEYL--STGKSSEKTDVFGYGVMLLELITGQRAFDLARLA--NDDDVMLLDW 259
Query: 64  FYKLLEPGE-----DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
              LL+  +     D+   G   +EE   V ++I V L C Q++P +R  MS+ V MLEG
Sbjct: 260 VKGLLKEKKLEALVDVDLQGNYKDEE---VEQLIQVALLCTQSSPMERPKMSEVVRMLEG 316

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 13/120 (10%)
Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV-GVRNNTASGVTHTSSTEMYFPDW 63
           RG + +IAPE    + G  S K+DV+G+G+ +LEL+ G R    + +   +  ++   DW
Sbjct: 196 RGXIGHIAPEYL--STGKSSEKTDVFGYGVMLLELITGQRAFDLARLA--NDDDVMLLDW 251
Query: 64  FYKLLEPGE-----DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
              LL+  +     D+   G   +EE   V ++I V L C Q++P +R  MS+ V MLEG
Sbjct: 252 VKGLLKEKKLEALVDVDLQGNYKDEE---VEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMY-FPDW 63
           +GT+ YI PE F +  G ++ KSDVY FG+ + E++  R    S +  +   EM    +W
Sbjct: 202 KGTLGYIDPEYFIK--GRLTEKSDVYSFGVVLFEVLCAR----SAIVQSLPREMVNLAEW 255
Query: 64  FYKLLEPG--EDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
             +    G  E +    L  +     +RK     + C+  +  DR SM   +  LE  L
Sbjct: 256 AVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMY-FPDW 63
           +GT+ YI PE F +  G ++ KSDVY FG+ + E++  R    S +  +   EM    +W
Sbjct: 202 KGTLGYIDPEYFIK--GRLTEKSDVYSFGVVLFEVLCAR----SAIVQSLPREMVNLAEW 255
Query: 64  FYKLLEPG--EDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL 120
             +    G  E +    L  +     +RK     + C+  +  DR SM   +  LE  L
Sbjct: 256 AVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYAL 314

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	7e-22
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-15
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	5e-13
3soc_A	322	Activin receptor type-2A; structural genomics cons	3e-07
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	5e-07
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	7e-07
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-06
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	6e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	6e-05
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-05
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	9e-05
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-04
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-04
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-04
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	3e-04
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	3e-04
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-04
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	5e-04
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	7e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	7e-04
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 87.6 bits (218), Expect = 7e-22
 Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           RGT+ +IAPE      G  S K+DV+G+G+ +LEL+  +             ++   DW 
Sbjct: 196 RGTIGHIAPEYLST--GKSSEKTDVFGYGVMLLELITGQRAFDLARLANDD-DVMLLDWV 252

Query: 65  YKLLEPG--EDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
             LL+    E L    L    ++  V ++I V L C Q++P +R  MS+ V MLEG
Sbjct: 253 KGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 16/118 (13%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV-GVRNNTASGVTHTSSTEMYFPDWF 64
           GT +Y+APE      G I+ KSD+Y FG+ +LE++ G+                   D  
Sbjct: 197 GTTAYMAPEALR---GEITPKSDIYSFGVVLLEIITGLPA------VDEHREPQLLLDIK 247

Query: 65  YKLLEPGEDLKRHGLV----TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
            ++ +  + ++    +     + +   V  M  V   C+    + R  + K  ++L+ 
Sbjct: 248 EEIEDEEKTIED--YIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQE 303

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 63.0 bits (154), Expect = 5e-13
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +GT+ YI PE F +  G ++ KSDVY FG+ + E++  R+     V       +   +W 
Sbjct: 202 KGTLGYIDPEYFIK--GRLTEKSDVYSFGVVLFEVLCARSAI---VQSLPREMVNLAEWA 256

Query: 65  YKLLEPGE-----DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG 119
            +    G+     D      +  E    +RK     + C+  +  DR SM   +  LE  
Sbjct: 257 VESHNNGQLEQIVDPNLADKIRPES---LRKFGDTAVKCLALSSEDRPSMGDVLWKLEYA 313

Query: 120 LE 121
           L 
Sbjct: 314 LR 315

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 20/126 (15%)

Query: 6   GTVSYIAPEVF---CRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPD 62
           GT  Y+APEV             + D+Y  G+ + EL                 + Y   
Sbjct: 195 GTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTA------ADGPVDEYMLP 248

Query: 63  WFYKLLEPGEDLKRHGLVTEE-----------EEVIVRKMIIVRLWCIQTNPSDRSSMSK 111
           +  ++ +         +V  +           +   +  +      C   +   R S   
Sbjct: 249 FEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGC 308

Query: 112 AVEMLE 117
             E + 
Sbjct: 309 VGERIT 314

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 27/145 (18%), Positives = 53/145 (36%), Gaps = 41/145 (28%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSST---E 57
           M + +G+ +++APEVF  +    S K DV+ +G+ + E++            T      E
Sbjct: 160 MTNNKGSAAWMAPEVFEGS--NYSEKCDVFSWGIILWEVI------------TRRKPFDE 205

Query: 58  MYFPDWFYKLLEPGEDLKRHGLVTEEE---------EVIVRKMIIVRLWCIQTNPSDRSS 108
           +  P +                V             + I  + ++ R W    +PS R S
Sbjct: 206 IGGPAFRI-----------MWAVHNGTRPPLIKNLPKPI--ESLMTRCW--SKDPSQRPS 250

Query: 109 MSKAVEMLEGGLEALQVPPKPFLKS 133
           M + V+++   +       +P    
Sbjct: 251 MEEIVKIMTHLMRYFPGADEPLQYP 275

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 19/140 (13%)

Query: 6   GTVSYIAPEVF-----CRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYF 60
           GT+ Y+APEV       R+      + D+Y  G+   E+     +   G +     E   
Sbjct: 190 GTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP---EYQM 246

Query: 61  PDWFYKLLEPGEDLKRHGLVTE-----------EEEVIVRKMIIVRLWCIQTNPSDRSSM 109
                    P  +  +  +  E           E  + VR +      C   +   R + 
Sbjct: 247 AFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTA 306

Query: 110 SKAVEMLEGGLEALQVPPKP 129
             A E +   +   +     
Sbjct: 307 QXAEERMAELMMIWERNKSV 326

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV 40
           +    G   ++APE         + K+D Y F M +  ++
Sbjct: 183 VSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTIL 222

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 37/131 (28%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGI-------SHKSDVYGFGMTVLELV-------GVRNNT 46
           +    G + ++APE+  +            S  SDV+  G    EL              
Sbjct: 191 LRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEA 250

Query: 47  ASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDR 106
                 T            K       +         +E+     I++   C      +R
Sbjct: 251 IIWQMGTG----------MKPNLSQIGM--------GKEI---SDILLF--CWAFEQEER 287

Query: 107 SSMSKAVEMLE 117
            + +K ++MLE
Sbjct: 288 PTFTKLMDMLE 298

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV 40
            GT  ++APE++           DVY FGM +LE+ 
Sbjct: 191 IGTPEFMAPEMYEE---KYDESVDVYAFGMCMLEMA 223

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 31/127 (24%)

Query: 1   MLDARGTVSYIAPEVFC-RNFGGISHKSDVYGFGMTVLELV-------GVRNNTA--SGV 50
                G++ ++APEV   ++    S +SDVY FG+ + EL+        + N       V
Sbjct: 179 FEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMV 238

Query: 51  THTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMS 110
                            L P     R       + ++          C++    +R S  
Sbjct: 239 GR-------------GSLSPDLSKVRSNCPKRMKRLMAE--------CLKKKRDERPSFP 277

Query: 111 KAVEMLE 117
           + +  +E
Sbjct: 278 RILAEIE 284

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 43/147 (29%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR--------NNTASGVTH 52
                G   ++APE+   N      K DV+ FG+ + E++G               G+  
Sbjct: 179 RYTVVGNPYWMAPEMI--NGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNV 236

Query: 53  TSSTEMYFPDW----FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSS 108
               + Y P      F+ +                            + C   +P  R S
Sbjct: 237 RGFLDRYCPPNCPPSFFPIT---------------------------VRCCDLDPEKRPS 269

Query: 109 MSKAVEMLEGGLEAL--QVPPKPFLKS 133
             K    LE     L   +P  P L+ 
Sbjct: 270 FVKLEHWLETLRMHLAGHLPLGPQLEQ 296

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV 40
              A GT  ++APEV        + KSDVY FG+ + EL 
Sbjct: 196 SKSAAGTPEWMAPEVLRDE--PSNEKSDVYSFGVILWELA 233

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 1   MLDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV 40
            + A G  +++APEV        S  SDV+ +G+ + EL+
Sbjct: 171 KMSAAGAYAWMAPEVI--RASMFSKGSDVWSYGVLLWELL 208

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 4   ARGTVSYIAPEVFC-RNFGGISHKSDVYGFGMTVLELV 40
                +++APE    +        +D++ F + + ELV
Sbjct: 168 RMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELV 205

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 25/129 (19%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT  Y++PE    N    SHK D++  G+ + EL+           +  ST+M       
Sbjct: 192 GTKLYMSPEQIHGN--SYSHKVDIFSLGLILFELL-----------YPFSTQMERVRTLT 238

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG-LEALQ 124
            +    +           E V+V+ M       +  +P +R     A+ ++E    E L 
Sbjct: 239 DVRN-LKFPPLFTQKYPCEYVMVQDM-------LSPSPMERPE---AINIIENAVFEDLD 287

Query: 125 VPPKPFLKS 133
            P K  L+ 
Sbjct: 288 FPGKTVLRQ 296

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 21/128 (16%), Positives = 45/128 (35%), Gaps = 34/128 (26%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT  Y++PE    N    SHK D++  G+ + EL+           ++ ST+M       
Sbjct: 238 GTKLYMSPEQIHGN--NYSHKVDIFSLGLILFELL-----------YSFSTQMERVRIIT 284

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQV 125
            +        R+            +  ++    +  +P++R     A +++E        
Sbjct: 285 DV--------RNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPE---ATDIIE-------- 325

Query: 126 PPKPFLKS 133
                 ++
Sbjct: 326 --NAIFEN 331

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 26/129 (20%)

Query: 6   GTVSYIAPEVFCRNFGGI----SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFP 61
           GT  Y+APEV   +          ++D+Y  G+   E+       A   +     E Y  
Sbjct: 213 GTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEI-------ARRCSIGGIHEDYQL 265

Query: 62  DWFYKL-LEPGEDLKRHGLVTE----------EEEVIVRKM--IIVRLWCIQTNPSDRSS 108
            ++  +  +P  +  R  +  +          +    +R M  I+   W    N + R +
Sbjct: 266 PYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECW--YANGAARLT 323

Query: 109 MSKAVEMLE 117
             +  + L 
Sbjct: 324 ALRIKKTLS 332

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLEL 39
            GT+ Y+APE+  +   G    +D++  G T++E+
Sbjct: 184 TGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEM 218

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 37.3 bits (86), Expect = 7e-04
 Identities = 11/116 (9%), Positives = 31/116 (26%), Gaps = 23/116 (19%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV-------GVRNNTASGVTHTSSTEM 58
             V+Y   E    +    +H  + +  G+++  +         V           S    
Sbjct: 253 VPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVP 312

Query: 59  YFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
                 +    P         + +  + ++ +        +  +   R    +A+E
Sbjct: 313 GTDSLAFGSCTP---------LPDFVKTLIGRF-------LNFDRRRRLLPLEAME 352

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 28/131 (21%)

Query: 5   RGTVSYIAPEVFCRNFGGIS----HKSDVYGFGMTVL-ELVGVRNNTASGVTHTSSTEMY 59
            GT  Y+ PEV   +           +D+Y FG+ +L E+       A         E Y
Sbjct: 207 VGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGL-ILWEV-------ARRCVSGGIVEEY 258

Query: 60  FPDWF-YKLLEPGEDLKRHGLVTE----------EEEVIVRKM--IIVRLWCIQTNPSDR 106
              +      +P  +  R  +  +            +  +R+M  ++   W    NP+ R
Sbjct: 259 QLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECW--AHNPASR 316

Query: 107 SSMSKAVEMLE 117
            +  +  + L 
Sbjct: 317 LTALRVKKTLA 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.91
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.91
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.9
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.9
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.89
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.89
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.88
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.86
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.85
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.85
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.83
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.82
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.81
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.8
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.79
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.77
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.77
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.77
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.75
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.75
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.75
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.75
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.74
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.74
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.74
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.74
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.74
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.74
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.74
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.74
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.74
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.74
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.74
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.73
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.73
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.73
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.73
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.73
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.73
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.73
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.73
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.73
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.73
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.72
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.72
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.72
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.72
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.72
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.72
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.72
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.72
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.72
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.72
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.71
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.71
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.71
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.71
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.71
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.71
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.71
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.71
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.71
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.71
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.71
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.71
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.7
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.7
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.7
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.7
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.7
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.7
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.7
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.7
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.69
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.69
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.69
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.69
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.69
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.69
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.69
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.69
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.69
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.69
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.69
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.68
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.68
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.68
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.68
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.68
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.68
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.68
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.68
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.68
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.68
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.68
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.67
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.67
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.67
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.67
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.66
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.66
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.66
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.66
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.66
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.66
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.66
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.66
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.65
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.65
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.65
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.65
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.65
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.65
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.65
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.65
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.65
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.65
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.65
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.64
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.64
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.64
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.64
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.64
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.64
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.64
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.64
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.64
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.64
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.64
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.63
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.63
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.63
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.63
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.63
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.63
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.63
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.63
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.63
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.63
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.63
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.63
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.62
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.62
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.62
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.62
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.62
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.62
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.62
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.62
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.62
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.62
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.62
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.62
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.62
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.62
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.62
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.61
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.61
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.61
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.61
3niz_A	311	Rhodanese family protein; structural genomics, str	99.61
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.61
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.61
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.61
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.6
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.6
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.6
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.6
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.6
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.6
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.6
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.6
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.6
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.6
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.6
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.6
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.6
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.6
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.6
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.6
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.6
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.59
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.59
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.59
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.59
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.59
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.59
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.59
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.59
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.59
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.59
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.59
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.59
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.58
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.58
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.58
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.58
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.58
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.58
3bhy_A	283	Death-associated protein kinase 3; death associate	99.58
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.58
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.57
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.57
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.57
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.57
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.57
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.57
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.57
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.57
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.57
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.57
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.57
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.57
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.56
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.56
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.56
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.56
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.55
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.55
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.55
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.55
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.55
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.55
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.54
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.54
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.54
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.54
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.54
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.54
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.53
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.53
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.53
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.53
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.53
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.52
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.52
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.51
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.5
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.49
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.49
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.48
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.48
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.47
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.46
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.46
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.4
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.31
3uqc_A	286	Probable conserved transmembrane protein; structur	99.26
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.24
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	98.52
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	95.64
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	95.13

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.91  E-value=8.7e-25  Score=140.13  Aligned_cols=99  Identities=15%  Similarity=0.216  Sum_probs=75.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +.+||+.|||||++  ..+.|+.++|||||||++||+++ |..||.+....      .    +...+..+..+..|...+
T Consensus       206 ~~~gt~~ymAPE~l--~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~------~----~~~~i~~~~~~~~p~~~~  273 (308)
T 4gt4_A          206 NSLLPIRWMAPEAI--MYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQ------D----VVEMIRNRQVLPCPDDCP  273 (308)
T ss_dssp             SSCBCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHH------H----HHHHHHTTCCCCCCTTCC
T ss_pred             ccccCCcccCHHHH--hCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCcccch
Confidence            46799999999998  56789999999999999999998 78898754321      1    233333444444455555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                      .       .+..|+..||+.||++||++++|+..|+.+.
T Consensus       274 ~-------~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~  305 (308)
T 4gt4_A          274 A-------WVYALMIECWNEFPSRRPRFKDIHSRLRAWG  305 (308)
T ss_dssp             H-------HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             H-------HHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence            4       4556667799999999999999999998764

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.91  E-value=8.8e-25  Score=141.21  Aligned_cols=101  Identities=19%  Similarity=0.289  Sum_probs=76.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..+||+.|||||++  ....|+.++|||||||++||+++ |+.||......      .    ....+..+..+..|...+
T Consensus       219 ~~~gt~~ymAPE~~--~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~------~----~~~~i~~g~~~~~p~~~~  286 (329)
T 4aoj_A          219 RTMLPIRWMPPESI--LYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNT------E----AIDCITQGRELERPRACP  286 (329)
T ss_dssp             -CCCCGGGCCHHHH--TTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHH------H----HHHHHHHTCCCCCCTTCC
T ss_pred             cccccccccChhhh--cCCCCCccccccchHHHHHHHHcCCCCCCCCCCHH------H----HHHHHHcCCCCCCccccc
Confidence            35799999999998  66789999999999999999998 89998754221      1    222233333444555555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      +.       +..|+..||+.||++|||+++|+..|+.+.+.
T Consensus       287 ~~-------~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          287 PE-------VYAIMRGCWQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             HH-------HHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HH-------HHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence            53       45566669999999999999999999988765

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=134.62  Aligned_cols=106  Identities=20%  Similarity=0.216  Sum_probs=72.9

Q ss_pred             CCCCccccccCccccccc-cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cc---cc
Q 040499            2 LDARGTVSYIAPEVFCRN-FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DL---KR   76 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~-~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~   76 (133)
                      ++.+||+.|||||++... .+.|+.++|||||||++||+++|+.||.+....      ..   ....+..+. .+   ..
T Consensus       192 ~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~------~~---~~~~~~~~~~~p~~~~~  262 (307)
T 3omv_A          192 EQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR------DQ---IIFMVGRGYASPDLSKL  262 (307)
T ss_dssp             --CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH------HH---HHHHHHTTCCCCCSTTS
T ss_pred             cccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH------HH---HHHHHhcCCCCCCcccc
Confidence            346899999999998432 346899999999999999999999999754321      11   111121111 11   12


Q ss_pred             cCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           77 HGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      +...+.       .+..++..||+.||++|||+.+|+..|+.+....
T Consensus       263 ~~~~~~-------~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~l  302 (307)
T 3omv_A          263 YKNCPK-------AMKRLVADCVKKVKEERPLFPQILSSIELLQHSL  302 (307)
T ss_dssp             CTTSCH-------HHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred             cccchH-------HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccC
Confidence            223333       4556666799999999999999999998776544

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.90  E-value=1e-24  Score=141.95  Aligned_cols=103  Identities=28%  Similarity=0.354  Sum_probs=77.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +.+||+.|||||++  ....|+.++|||||||++||+++ |..||.+.....         .+...+..+..+..|...+
T Consensus       246 ~~~gt~~ymAPE~l--~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~---------~~~~~i~~g~~~~~p~~~~  314 (353)
T 4ase_A          246 DARLPLKWMAPETI--FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE---------EFCRRLKEGTRMRAPDYTT  314 (353)
T ss_dssp             TEEECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH---------HHHHHHHHTCCCCCCTTCC
T ss_pred             cccccccccCHHHH--hcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHH---------HHHHHHHcCCCCCCCccCC
Confidence            35689999999998  56789999999999999999998 899987643221         1333334444445555555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      +.       +..++..||+.||++|||+++|++.|+++++..
T Consensus       315 ~~-------~~~li~~c~~~dP~~RPt~~eil~~L~~llq~~  349 (353)
T 4ase_A          315 PE-------MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  349 (353)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             HH-------HHHHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence            53       455666699999999999999999999887653

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.89  E-value=1.3e-24  Score=138.81  Aligned_cols=100  Identities=17%  Similarity=0.272  Sum_probs=75.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      .+||+.|||||++  ....|+.++|||||||++||+++ |+.||......      .    +...+..+..+..|...++
T Consensus       190 ~~gt~~ymAPE~~--~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~------~----~~~~i~~~~~~~~p~~~~~  257 (299)
T 4asz_A          190 TMLPIRWMPPESI--MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNN------E----VIECITQGRVLQRPRTCPQ  257 (299)
T ss_dssp             EEECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH------H----HHHHHHHTCCCCCCTTCCH
T ss_pred             eecChhhcCHHHH--cCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHH------H----HHHHHHcCCCCCCCccchH
Confidence            4589999999998  56789999999999999999998 89998754221      1    2222333333444555555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                             .+..++..||+.||++|||+++|...|+++.+.
T Consensus       258 -------~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~  290 (299)
T 4asz_A          258 -------EVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA  290 (299)
T ss_dssp             -------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence                   345566669999999999999999999887654

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.89  E-value=1.5e-23  Score=135.50  Aligned_cols=111  Identities=14%  Similarity=0.077  Sum_probs=80.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc-ccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED-LKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   81 (133)
                      +++||+.|||||++  .+..|+.++||||+||++|||++|..||........         .........+ ...+...+
T Consensus       215 ~~~GT~~YmAPE~~--~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~---------~~~i~~~~~~~~~~~~~~s  283 (336)
T 4g3f_A          215 YIPGTETHMAPEVV--MGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPL---------CLKIASEPPPIREIPPSCA  283 (336)
T ss_dssp             CCCCCGGGCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCC---------HHHHHHSCCGGGGSCTTSC
T ss_pred             ccccCccccCHHHH--CCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHH---------HHHHHcCCCCchhcCccCC
Confidence            35799999999998  567899999999999999999999999976543321         1111222211 22344556


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCCCCCC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKPFL  131 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~~~~~  131 (133)
                      ....+++.       .||+.||++|||+.||++.|....+......+|+.
T Consensus       284 ~~~~~li~-------~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~  326 (336)
T 4g3f_A          284 PLTAQAIQ-------EGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWK  326 (336)
T ss_dssp             HHHHHHHH-------HHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSS
T ss_pred             HHHHHHHH-------HHccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCc
Confidence            65555444       49999999999999999988887776666666653

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.88  E-value=5.2e-23  Score=131.80  Aligned_cols=117  Identities=15%  Similarity=0.097  Sum_probs=74.5

Q ss_pred             CCccccccCccccccc----cCccccccchhhhhHHHHHHHccCCCCCCCCCCCC------CcchhhhHHHHhhhcCCcc
Q 040499            4 ARGTVSYIAPEVFCRN----FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTS------STEMYFPDWFYKLLEPGED   73 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~----~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~------~~~~~~~~~~~~~~~~~~~   73 (133)
                      .+||+.|||||++.+.    ...++.++|||||||++||+++|..|+........      ...................
T Consensus       172 ~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r  251 (303)
T 3hmm_A          172 RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLR  251 (303)
T ss_dssp             --CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCC
T ss_pred             ccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCC
Confidence            5799999999998321    12477899999999999999999877643322110      0011111112222233333


Q ss_pred             ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           74 LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      +..|....  ..+....+.+|+..||+.||++|||+.+|++.|+++.+.
T Consensus       252 p~~p~~~~--~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          252 PNIPNRWQ--SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CCCCGGGG--SSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             CCCCcccc--chHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            33332211  123455677889999999999999999999999887654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.86  E-value=8.9e-22  Score=125.15  Aligned_cols=93  Identities=23%  Similarity=0.374  Sum_probs=66.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   81 (133)
                      +.+||+.|||||++  . +.|+.++||||+||++||+++|..||......         ..+...+..+. +...+...+
T Consensus       189 ~~~GTp~YmAPE~~--~-~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~---------~~~~~~i~~~~~~~~~~~~~~  256 (290)
T 3fpq_A          189 AVIGTPEFMAPEMY--E-EKYDESVDVYAFGMCMLEMATSEYPYSECQNA---------AQIYRRVTSGVKPASFDKVAI  256 (290)
T ss_dssp             ESCSSCCCCCGGGG--G-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH---------HHHHHHHTTTCCCGGGGGCCC
T ss_pred             CcccCccccCHHHc--C-CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcH---------HHHHHHHHcCCCCCCCCccCC
Confidence            46899999999987  3 46999999999999999999999999643221         11222222222 222334444


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +...       .++..||+.||++|||+.++++
T Consensus       257 ~~~~-------~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          257 PEVK-------EIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             HHHH-------HHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHHH-------HHHHHHccCChhHCcCHHHHhc
Confidence            4444       4455599999999999999986

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.85  E-value=2e-22  Score=130.84  Aligned_cols=93  Identities=22%  Similarity=0.313  Sum_probs=67.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|||||++  .+..|+.++||||+||++|||++|..||.+....      .    +...+..+..+..+...+.
T Consensus       184 ~~~GT~~YmAPE~l--~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~------~----~~~~i~~~~~~~~~~~~s~  251 (350)
T 4b9d_A          184 ACIGTPYYLSPEIC--ENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMK------N----LVLKIISGSFPPVSLHYSY  251 (350)
T ss_dssp             HHHSCCTTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH------H----HHHHHHHTCCCCCCTTSCH
T ss_pred             ccCCCccccCHHHH--CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH------H----HHHHHHcCCCCCCCccCCH
Confidence            35799999999998  5678999999999999999999999999754221      1    2222222223333444566


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+++.       .||+.||++|||+.++++
T Consensus       252 ~~~~li~-------~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          252 DLRSLVS-------QLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             HHHHHHH-------HHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHHH-------HHccCChhHCcCHHHHhc
Confidence            5544444       499999999999999975

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.85  E-value=7.3e-22  Score=128.01  Aligned_cols=98  Identities=17%  Similarity=0.230  Sum_probs=69.2

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc--ccccCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED--LKRHGL   79 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   79 (133)
                      ++.+||+.|||||++  ....|+.++||||+||+++||++|..||.+....      .    ....+.....  ...+..
T Consensus       228 ~~~~GTp~YmAPEvl--~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~------~----~~~~i~~~~~~~~~~~~~  295 (346)
T 4fih_A          228 KSLVGTPYWMAPELI--SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL------K----AMKMIRDNLPPRLKNLHK  295 (346)
T ss_dssp             CCCCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH------H----HHHHHHHSSCCCCSCGGG
T ss_pred             cccccCcCcCCHHHH--CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH------H----HHHHHHcCCCCCCCcccc
Confidence            467899999999998  5678999999999999999999999999754221      1    1111111111  112233


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHcc
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEG  118 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~  118 (133)
                      .++...+++       ..||+.||++|||+.++++  ++.+
T Consensus       296 ~s~~~~dli-------~~~L~~dP~~R~ta~e~l~Hp~~~~  329 (346)
T 4fih_A          296 VSPSLKGFL-------DRLLVRDPAQRATAAELLKHPFLAK  329 (346)
T ss_dssp             SCHHHHHHH-------HHHSCSSTTTSCCHHHHTTCGGGGG
T ss_pred             CCHHHHHHH-------HHHcCCChhHCcCHHHHhcCHhhcC
Confidence            455444444       4499999999999999986  4544

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.83  E-value=2.9e-21  Score=128.00  Aligned_cols=98  Identities=17%  Similarity=0.258  Sum_probs=69.8

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc--cccccCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE--DLKRHGL   79 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   79 (133)
                      ++++||+.|||||++  ....|+.++||||+||+++||++|..||.+....      .    ....+....  .......
T Consensus       305 ~~~~GTp~YmAPEvl--~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~------~----~~~~i~~~~~~~~~~~~~  372 (423)
T 4fie_A          305 KSLVGTPYWMAPELI--SRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL------K----AMKMIRDNLPPRLKNLHK  372 (423)
T ss_dssp             CCCEECTTTCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH------H----HHHHHHHSCCCCCSCTTS
T ss_pred             cccccCcCcCCHHHH--CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH------H----HHHHHHcCCCCCCccccc
Confidence            457899999999998  5678999999999999999999999999754221      1    111121111  1122334


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHcc
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEG  118 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~  118 (133)
                      .+..+.+++.+       ||+.||++||++.++++  ++.+
T Consensus       373 ~s~~~~dli~~-------~L~~dP~~R~ta~ell~Hp~~~~  406 (423)
T 4fie_A          373 VSPSLKGFLDR-------LLVRDPAQRATAAELLKHPFLAK  406 (423)
T ss_dssp             SCHHHHHHHHH-------HSCSSTTTSCCHHHHTTCGGGGG
T ss_pred             CCHHHHHHHHH-------HcCCChhHCcCHHHHhcCHHhcC
Confidence            55555555444       99999999999999986  4544

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.82  E-value=7.8e-21  Score=119.98  Aligned_cols=93  Identities=17%  Similarity=0.257  Sum_probs=61.8

Q ss_pred             CCCCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ++.+||+.|||||++  .+..+ +.++||||+||+++++++|..||......      .    +...+..+ ....+...
T Consensus       169 ~~~~GT~~Y~APE~~--~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~------~----~~~~i~~~-~~~~p~~~  235 (275)
T 3hyh_A          169 KTSCGSPNYAAPEVI--SGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIP------V----LFKNISNG-VYTLPKFL  235 (275)
T ss_dssp             ------CTTSCHHHH--SSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHT-CCCCCTTS
T ss_pred             CCeeECcccCChhhh--cCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHH------H----HHHHHHcC-CCCCCCCC
Confidence            357899999999998  44554 57899999999999999999999753211      1    11222212 12334555


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ++...+++.       .||+.||++|||+.++++
T Consensus       236 s~~~~~li~-------~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          236 SPGAAGLIK-------RMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             CHHHHHHHH-------HHSCSSGGGSCCHHHHHH
T ss_pred             CHHHHHHHH-------HHccCChhHCcCHHHHHc
Confidence            665555444       489999999999999987

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.81  E-value=1.3e-20  Score=120.49  Aligned_cols=93  Identities=22%  Similarity=0.345  Sum_probs=67.0

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ++.+||+.|||||++  ....|+.++||||+||++|+|++|..||.+....      .    ....+... ....|...+
T Consensus       184 ~~~~GT~~YmAPE~~--~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~------~----~~~~i~~~-~~~~p~~~s  250 (304)
T 3ubd_A          184 YSFCGTVEYMAPEVV--NRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRK------E----TMTMILKA-KLGMPQFLS  250 (304)
T ss_dssp             CSCCCCGGGCCHHHH--HTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHC-CCCCCTTSC
T ss_pred             cccccCcccCCHHHh--ccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHH------H----HHHHHHcC-CCCCCCcCC
Confidence            457899999999998  5678999999999999999999999999754221      1    11111111 223355566


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                      +...+++.+       ||+.||++||+     ++++++
T Consensus       251 ~~~~~li~~-------~L~~dP~~R~ta~~~~~~eil~  281 (304)
T 3ubd_A          251 PEAQSLLRM-------LFKRNPANRLGAGPDGVEEIKR  281 (304)
T ss_dssp             HHHHHHHHH-------HTCSSGGGSTTCSTTTHHHHHT
T ss_pred             HHHHHHHHH-------HcccCHHHCCCCCcCCHHHHHc
Confidence            655555544       99999999998     467775

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.80  E-value=6.4e-21  Score=122.05  Aligned_cols=91  Identities=15%  Similarity=0.217  Sum_probs=66.4

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      .+++||+.|||||++  ....|+.++||||+||++++|++|..||.+....      .    +...+... ....|...+
T Consensus       192 ~~~~GTp~YmAPEvl--~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~------~----~~~~i~~~-~~~~p~~~s  258 (311)
T 4aw0_A          192 NSFVGTAQYVSPELL--TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEG------L----IFAKIIKL-EYDFPEKFF  258 (311)
T ss_dssp             CCCCSCGGGCCHHHH--HHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHT-CCCCCTTCC
T ss_pred             cCcccCcccCCHHHH--cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH------H----HHHHHHcC-CCCCCcccC
Confidence            357899999999999  5568999999999999999999999999753221      1    11111111 123355566


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKA  112 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v  112 (133)
                      +...+++.+       ||+.||++|+|++|+
T Consensus       259 ~~~~dli~~-------lL~~dp~~R~t~~e~  282 (311)
T 4aw0_A          259 PKARDLVEK-------LLVLDATKRLGCEEM  282 (311)
T ss_dssp             HHHHHHHHH-------HSCSSGGGSTTSGGG
T ss_pred             HHHHHHHHH-------HccCCHhHCcChHHH
Confidence            655555554       889999999999885

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.79  E-value=7.6e-19  Score=116.12  Aligned_cols=111  Identities=15%  Similarity=0.106  Sum_probs=70.6

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---------
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---------   72 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   72 (133)
                      ++.+||+.|+|||++.+ ...++.++||||+||+++||++|..||.+....      .....+........         
T Consensus       220 ~~~~GT~~Y~APEv~~~-~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~------~~l~~I~~~~g~p~~~~~~~~~~  292 (398)
T 4b99_A          220 TEYVATRWYRAPELMLS-LHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV------HQLQLIMMVLGTPSPAVIQAVGA  292 (398)
T ss_dssp             CSSCCCCTTCCHHHHTT-CSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH------HHHHHHHHHHCCCCGGGTC----
T ss_pred             ccceeChHhcCHHHhcC-CCCCCChhheehhHHHHHHHHHCCCCCCCCCHH------HHHHHHHHhcCCCChHHhhhhhh
Confidence            46789999999998732 235689999999999999999999999764321      11111111100000         


Q ss_pred             ----------ccc-------ccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCCCCC
Q 040499           73 ----------DLK-------RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEALQVP  126 (133)
Q Consensus        73 ----------~~~-------~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~~~~  126 (133)
                                +..       .....+.       .+..|+..||+.||++|+|+.++++  ++.+.......+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~p~~~p  358 (398)
T 4b99_A          293 ERVRAYIQSLPPRQPVPWETVYPGADR-------QALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDDEP  358 (398)
T ss_dssp             -CHHHHHHSSCCCCCCCHHHHSTTCCH-------HHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCCGGGSC
T ss_pred             hhhhhhhhcCCCcCCCCHHHhCCCCCH-------HHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCCCcccc
Confidence                      000       0011233       3445566699999999999999987  676665443333

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.77  E-value=2e-19  Score=115.47  Aligned_cols=107  Identities=22%  Similarity=0.299  Sum_probs=71.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||......      ..   .............+...+..
T Consensus       199 ~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~  267 (309)
T 3p86_A          199 AAGTPEWMAPEVL--RDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA------QV---VAAVGFKCKRLEIPRNLNPQ  267 (309)
T ss_dssp             ---CCTTSCHHHH--TTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH------HH---HHHHHHSCCCCCCCTTSCHH
T ss_pred             CCCCccccChhhh--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH------HH---HHHHHhcCCCCCCCccCCHH
Confidence            5689999999998  5567889999999999999999999998654221      11   11111122223334445554


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPK  128 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~~  128 (133)
                             +..++..||+.||.+||++.+|++.|+.+.+....++.
T Consensus       268 -------l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p~~~  305 (309)
T 3p86_A          268 -------VAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVPPPN  305 (309)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC-------
T ss_pred             -------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCCCCC
Confidence                   44555559999999999999999999999877554433

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.77  E-value=2.1e-19  Score=114.91  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=59.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|||||++  .+..|+.++||||+||+++|+++   ||...        ..... ....+....       .++
T Consensus       189 ~~~GT~~YmAPE~~--~~~~y~~~~DiwSlGvilyell~---Pf~~~--------~~~~~-~~~~~~~~~-------~p~  247 (299)
T 4g31_A          189 GQVGTKLYMSPEQI--HGNSYSHKVDIFSLGLILFELLY---PFSTQ--------MERVR-TLTDVRNLK-------FPP  247 (299)
T ss_dssp             ---CCCTTSCHHHH--TTCCCCTHHHHHHHHHHHHHHHS---CCSSH--------HHHHH-HHHHHHTTC-------CCH
T ss_pred             CcccCccccCHHHH--cCCCCCCHHHHHHHHHHHHHHcc---CCCCc--------cHHHH-HHHHHhcCC-------CCC
Confidence            46899999999998  56789999999999999999985   55321        11111 111111111       122


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...........++..||+.||++|||+.++++
T Consensus       248 ~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          248 LFTQKYPCEYVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            22233334456777799999999999999987

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=111.54  Aligned_cols=109  Identities=20%  Similarity=0.332  Sum_probs=75.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..||.......     ..   ..........+..+...+..
T Consensus       163 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~  232 (307)
T 2eva_A          163 NKGSAAWMAPEVF--EGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPA-----FR---IMWAVHNGTRPPLIKNLPKP  232 (307)
T ss_dssp             --CCTTSSCHHHH--TCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSH-----HH---HHHHHHTTCCCCCBTTCCHH
T ss_pred             CCCCCceEChhhh--CCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccH-----HH---HHHHHhcCCCCCcccccCHH
Confidence            4689999999998  55678999999999999999999999987543211     00   11111122222333334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKP  129 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~~~  129 (133)
                             +..++..||+.||++||++.+|++.|+.+.+..+....|
T Consensus       233 -------l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~~~  271 (307)
T 2eva_A          233 -------IESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGADEP  271 (307)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCTTSC
T ss_pred             -------HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCCCCc
Confidence                   445556699999999999999999999887665544444

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.75  E-value=4.1e-18  Score=108.04  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=72.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++......++.++||||+|++++++++|..||.......    .   ............+..+...+.
T Consensus       185 ~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~  257 (287)
T 4f0f_A          185 GLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGK----I---KFINMIREEGLRPTIPEDCPP  257 (287)
T ss_dssp             CCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCH----H---HHHHHHHHSCCCCCCCTTSCH
T ss_pred             ccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccH----H---HHHHHHhccCCCCCCCcccCH
Confidence            356899999999874334567889999999999999999999987543221    1   111111222223333444454


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      .       +..++..||+.||.+||++.+|++.|+++
T Consensus       258 ~-------l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          258 R-------LRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             H-------HHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence            3       44555559999999999999999999864

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.75  E-value=2.4e-18  Score=109.55  Aligned_cols=110  Identities=10%  Similarity=-0.020  Sum_probs=74.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||.......   ........................+.
T Consensus       177 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (298)
T 1csn_A          177 NLSGTARYMSINTH--LGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAAT---NKQKYERIGEKKQSTPLRELCAGFPE  251 (298)
T ss_dssp             CCCSCTTTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCC---HHHHHHHHHHHHHHSCHHHHTTTSCH
T ss_pred             CCCCCcccCCchhh--cCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccc---cHHHHHHHHhhccCccHHHHHhhCcH
Confidence            34689999999998  55678999999999999999999999997654322   11111111111000111111222343


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                             .+..++..||+.||++||++.+|++.|+++.....
T Consensus       252 -------~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~  286 (298)
T 1csn_A          252 -------EFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN  286 (298)
T ss_dssp             -------HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             -------HHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence                   45555666999999999999999999998876543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.75  E-value=1.3e-18  Score=114.16  Aligned_cols=100  Identities=26%  Similarity=0.386  Sum_probs=72.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++ |..||.......          ....+..+.....+...+.
T Consensus       265 ~~~t~~y~aPE~~--~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  332 (370)
T 2psq_A          265 GRLPVKWMAPEAL--FDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE----------LFKLLKEGHRMDKPANCTN  332 (370)
T ss_dssp             TTSCGGGCCHHHH--HTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG----------HHHHHHTTCCCCCCTTSCH
T ss_pred             CCcccceECHhHh--cCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHH----------HHHHHhcCCCCCCCCCCCH
Confidence            3467889999998  55678999999999999999998 888887543221          2222333333333444444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .       +..++..||+.||++||++.+|++.|+++.+.
T Consensus       333 ~-------l~~li~~~l~~dP~~Rpt~~ell~~L~~il~~  365 (370)
T 2psq_A          333 E-------LYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL  365 (370)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence            3       44555669999999999999999999987654

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.75  E-value=1.9e-18  Score=111.21  Aligned_cols=114  Identities=26%  Similarity=0.437  Sum_probs=77.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccc--ccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLK--RHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   81 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|+.|+........   .....|............  .+....
T Consensus       201 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (321)
T 2qkw_B          201 VKGTLGYIDPEYF--IKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREM---VNLAEWAVESHNNGQLEQIVDPNLAD  275 (321)
T ss_dssp             CEEETTTCCHHHH--HHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSC---CCHHHHTHHHHTTTCCCSSSSSSCTT
T ss_pred             cCCCccccCHHHh--cCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHH---HHHHHHhhhccccccHHHhcChhhcc
Confidence            3589999999998  456789999999999999999999999876544321   122222221111111100  011111


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .........+..++..||+.||++||++.+|++.|+++.+.
T Consensus       276 ~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~  316 (321)
T 2qkw_B          276 KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL  316 (321)
T ss_dssp             CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence            22234556777888889999999999999999999987654

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.74  E-value=2.8e-18  Score=109.32  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=70.1

Q ss_pred             CCccccccCccccccccC------ccccccchhhhhHHHHHHHcc----------CCCCCCCCCCCCCcchhhhHHHHhh
Q 040499            4 ARGTVSYIAPEVFCRNFG------GISHKSDVYGFGMTVLELVGV----------RNNTASGVTHTSSTEMYFPDWFYKL   67 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~------~~~~~~dv~s~g~~~~~l~~~----------~~p~~~~~~~~~~~~~~~~~~~~~~   67 (133)
                      .+||..|+|||++.  ..      .++.++||||+|++++++++|          ..||.......    ..........
T Consensus       177 ~~gt~~y~aPE~~~--~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~----~~~~~~~~~~  250 (301)
T 3q4u_A          177 RVGTKRYMAPEVLD--ETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND----PSFEDMRKVV  250 (301)
T ss_dssp             CCCCGGGCCHHHHT--TCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS----CCHHHHHHHH
T ss_pred             cccccceeChhhhc--CcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC----cchhhhhHHH
Confidence            47999999999983  33      456799999999999999999          66665443221    1111111111


Q ss_pred             hcCCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           68 LEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      ......+..+...  ........+..++..||+.||++|||+.+|++.|+++
T Consensus       251 ~~~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          251 CVDQQRPNIPNRW--FSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             TTSCCCCCCCGGG--GGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             hccCCCCCCChhh--ccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            1112122112111  1123445677888889999999999999999999864

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.74  E-value=7e-19  Score=113.61  Aligned_cols=105  Identities=19%  Similarity=0.256  Sum_probs=73.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||++  ....++.++||||+|++++++++ |..||......      .    ....+........+...+. 
T Consensus       215 ~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~-  281 (325)
T 3kul_A          215 KIPIRWTAPEAI--AFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR------D----VISSVEEGYRLPAPMGCPH-  281 (325)
T ss_dssp             -CCGGGSCHHHH--HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH------H----HHHHHHTTCCCCCCTTCCH-
T ss_pred             CCcccccCHhHh--cCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH------H----HHHHHHcCCCCCCCCCcCH-
Confidence            356789999998  55678999999999999999998 88898654221      1    2222222323333444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPK  128 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~~  128 (133)
                            .+..++..||+.||.+||++.+|++.|+++.+.......
T Consensus       282 ------~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~~~~  320 (325)
T 3kul_A          282 ------ALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESLRA  320 (325)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC----
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcccccc
Confidence                  344555669999999999999999999998877654443

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.74  E-value=3.5e-18  Score=108.69  Aligned_cols=110  Identities=10%  Similarity=-0.008  Sum_probs=74.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||.+  ....++.++||||+|++++++++|..||...........  ........... .........+.
T Consensus       174 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~  248 (296)
T 3uzp_A          174 NLTGTARYASINTH--LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK--YERISEKKMST-PIEVLCKGYPS  248 (296)
T ss_dssp             CCCSCTTTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH--HHHHHHHHHHS-CHHHHTTTSCH
T ss_pred             ccccccccCChhhh--cCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhh--hhhhcccccCC-chHHHHhhCCH
Confidence            34689999999998  556789999999999999999999999986543221111  11111111111 01111223344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                             .+..++..||+.||++||++.+|++.|+++.....
T Consensus       249 -------~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~  283 (296)
T 3uzp_A          249 -------EFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             -------HHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             -------HHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence                   35555566999999999999999999998776543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.74  E-value=2.1e-18  Score=115.79  Aligned_cols=101  Identities=25%  Similarity=0.412  Sum_probs=73.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+|..|+|||++  ....++.++||||+|++++|+++ |..||......      .    ....+..+.....+...+. 
T Consensus       346 ~~~~~y~aPE~~--~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~------~----~~~~i~~~~~~~~~~~~~~-  412 (454)
T 1qcf_A          346 KFPIKWTAPEAI--NFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP------E----VIRALERGYRMPRPENCPE-  412 (454)
T ss_dssp             SSCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH------H----HHHHHHHTCCCCCCTTSCH-
T ss_pred             cccccccCHHHh--ccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH-
Confidence            467789999998  55678999999999999999999 88898653221      1    1122222222233444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                            .+..++..||+.||++||++.+|+..|+++.+...
T Consensus       413 ------~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~  447 (454)
T 1qcf_A          413 ------ELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATE  447 (454)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSC
T ss_pred             ------HHHHHHHHHccCChhHCcCHHHHHHHHHHHHhccc
Confidence                  45556666999999999999999999999987643

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.74  E-value=2.5e-18  Score=115.40  Aligned_cols=106  Identities=22%  Similarity=0.303  Sum_probs=75.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||......      .    ....+..+.....+...+. 
T Consensus       342 ~~~~~y~aPE~~--~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~------~----~~~~i~~~~~~~~~~~~~~-  408 (452)
T 1fmk_A          342 KFPIKWTAPEAA--LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR------E----VLDQVERGYRMPCPPECPE-  408 (452)
T ss_dssp             -CCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH------H----HHHHHHTTCCCCCCTTSCH-
T ss_pred             cccccccCHhHH--hcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH-
Confidence            467789999998  55688999999999999999999 88888653221      1    2222233333333444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKP  129 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~~~  129 (133)
                            .+..++..||+.||++||++.+|+..|+++.........|
T Consensus       409 ------~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~~~  448 (452)
T 1fmk_A          409 ------SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQP  448 (452)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCCCC
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCccccc
Confidence                  3455666699999999999999999999998776544433

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.74  E-value=2.5e-18  Score=110.82  Aligned_cols=116  Identities=16%  Similarity=0.105  Sum_probs=74.0

Q ss_pred             CCccccccCccccccc---cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCc-------chhhhHHHHhhhcCCcc
Q 040499            4 ARGTVSYIAPEVFCRN---FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSST-------EMYFPDWFYKLLEPGED   73 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~---~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~   73 (133)
                      .+||..|+|||++...   ...++.++||||+|++++++++|+.||..........       ......+..........
T Consensus       193 ~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (322)
T 3soc_A          193 QVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKR  272 (322)
T ss_dssp             CCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCC
T ss_pred             CccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCC
Confidence            5789999999988321   1356678999999999999999999987654322100       00111111111222222


Q ss_pred             ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           74 LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      +..+.....  ......+..++..||+.||++|||+.+|++.|+++.+
T Consensus       273 ~~~~~~~~~--~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~  318 (322)
T 3soc_A          273 PVLRDYWQK--HAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQR  318 (322)
T ss_dssp             CCCCGGGGS--SHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCccccccc--cchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence            211111111  1233457788888999999999999999999987754

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.74  E-value=2.4e-18  Score=110.94  Aligned_cols=116  Identities=33%  Similarity=0.490  Sum_probs=77.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc--cCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR--HGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   81 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..||........ .......|.............  .....
T Consensus       195 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (326)
T 3uim_A          195 VRGTIGHIAPEYL--STGKSSEKTDVFGYGVMLLELITGQRAFDLARLAND-DDVMLLDWVKGLLKEKKLEALVDVDLQG  271 (326)
T ss_dssp             CCSCGGGCCHHHH--HHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTT-SCSBHHHHHTTTTSSCCSTTSSCTTCTT
T ss_pred             ccCCcCccCHHHh--ccCCCCccccchhHHHHHHHHHhCCCcccccccccc-cchhHHHHHHHHhhchhhhhhcChhhcc
Confidence            4589999999998  556789999999999999999999999853211100 112222333222222111111  11112


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .........+..++..||+.||.+||++.+|++.|++....
T Consensus       272 ~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~~~  312 (326)
T 3uim_A          272 NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLA  312 (326)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSSCS
T ss_pred             ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcchh
Confidence            22345566788888999999999999999999999875433

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.74  E-value=3e-18  Score=115.00  Aligned_cols=99  Identities=21%  Similarity=0.208  Sum_probs=73.9

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||++  ....++.++||||+|+++|++++ |..||.......          ....+..+.....+...+. 
T Consensus       347 ~~~~~y~aPE~~--~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~----------~~~~i~~~~~~~~p~~~~~-  413 (450)
T 1k9a_A          347 KLPVKWTAPEAL--REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD----------VVPRVEKGYKMDAPDGCPP-  413 (450)
T ss_dssp             CCCTTTSCHHHH--HSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT----------HHHHHHTTCCCCCCTTCCH-
T ss_pred             CCCcceeCHHHh--cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHHcCCCCCCCCcCCH-
Confidence            567889999998  56789999999999999999998 888987543322          2223333333344454555 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            .+..++..||+.||++||++.+|+..|+++.+.
T Consensus       414 ------~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          414 ------AVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence                  344555669999999999999999999887644

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.74  E-value=2.9e-18  Score=110.85  Aligned_cols=124  Identities=18%  Similarity=0.172  Sum_probs=74.9

Q ss_pred             CCCccccccCccccccc-----cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcc---------hhhhHHHHhhh
Q 040499            3 DARGTVSYIAPEVFCRN-----FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTE---------MYFPDWFYKLL   68 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~-----~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~---------~~~~~~~~~~~   68 (133)
                      ..+||..|+|||++.+.     ...++.++||||+|++++++++|..|+...........         ...........
T Consensus       187 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (336)
T 3g2f_A          187 SEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVS  266 (336)
T ss_dssp             CTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHT
T ss_pred             cCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhc
Confidence            34699999999988321     03566789999999999999999776544322111000         00111111111


Q ss_pred             cCCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCC
Q 040499           69 EPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPP  127 (133)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~  127 (133)
                      .....+..+...... ......+..++..||+.||++|||+.+|++.|+++........
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          267 REKQRPKFPEAWKEN-SLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK  324 (336)
T ss_dssp             TSCCCCCCCTTCCCC-SHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred             ccccCCCCCcccccc-cchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence            222222223322221 1234457778888999999999999999999888765544333

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.74  E-value=6.6e-19  Score=115.43  Aligned_cols=101  Identities=20%  Similarity=0.280  Sum_probs=72.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||+.|+|||++  ....++.++||||+|++++++++ |..||......      .    ....+..+.....+...+.
T Consensus       246 ~~~t~~y~aPE~~--~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  313 (367)
T 3l9p_A          246 AMLPVKWMPPEAF--MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ------E----VLEFVTSGGRMDPPKNCPG  313 (367)
T ss_dssp             GGSCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH------H----HHHHHHTTCCCCCCTTCCH
T ss_pred             cCCcccEECHHHh--cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCccCCH
Confidence            4578899999998  45678999999999999999998 88888654221      1    2222222323333444444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                             .+..++..||+.||.+||++.+|++.|+.+.+..
T Consensus       314 -------~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          314 -------PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             -------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             -------HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence                   3455666699999999999999999998776553

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.74  E-value=2.6e-18  Score=110.97  Aligned_cols=98  Identities=19%  Similarity=0.285  Sum_probs=71.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+........+...+. 
T Consensus       180 ~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  246 (327)
T 3poz_A          180 KVPIKWMALESI--LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----------ISSILEKGERLPQPPICTI-  246 (327)
T ss_dssp             CCCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----------HHHHHHTTCCCCCCTTBCH-
T ss_pred             CccccccChHHh--ccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHH----------HHHHHHcCCCCCCCccCCH-
Confidence            467899999998  55688999999999999999999 899987543321          2222222323333333444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||+.||.+||++.+|+..|+++..
T Consensus       247 ------~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          247 ------DVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             ------HHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence                  34556666999999999999999998877654

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.73  E-value=5.1e-18  Score=107.87  Aligned_cols=109  Identities=10%  Similarity=-0.016  Sum_probs=73.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||.+  ....++.++||||+|++++++++|..||........  .............. .........+.
T Consensus       174 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~  248 (296)
T 4hgt_A          174 NLTGTARYASINTH--LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATK--RQKYERISEKKMST-PIEVLCKGYPS  248 (296)
T ss_dssp             CCCSCGGGCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSS--SSHHHHHHHHHHHS-CHHHHTTTSCH
T ss_pred             ccCCCccccchHHh--cCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhh--hhhhhhhhcccccc-hhhhhhccCCH
Confidence            35689999999998  556789999999999999999999999976543321  11111111111110 01111122344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                             .+..++..||+.||++||++.+|++.|+++.+..
T Consensus       249 -------~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~  282 (296)
T 4hgt_A          249 -------EFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  282 (296)
T ss_dssp             -------HHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence                   4555566699999999999999999999877654

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.73  E-value=2.1e-18  Score=108.31  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=70.1

Q ss_pred             CCCccccccCccccccc-cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRN-FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~-~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ...||..|+|||.+... ...++.++||||+|++++++++|..||......         ............+..+...+
T Consensus       167 ~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  237 (271)
T 3kmu_A          167 GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNM---------EIGMKVALEGLRPTIPPGIS  237 (271)
T ss_dssp             TCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHH---------HHHHHHHHSCCCCCCCTTCC
T ss_pred             CccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChH---------HHHHHHHhcCCCCCCCCCCC
Confidence            35689999999998321 122334799999999999999999998654221         11122222333333444455


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      ..       +..++..||+.||++||++.++++.|+++.+
T Consensus       238 ~~-------~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          238 PH-------VSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             HH-------HHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            54       4445555999999999999999999987653

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.73  E-value=3.1e-18  Score=117.78  Aligned_cols=93  Identities=16%  Similarity=0.190  Sum_probs=66.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   79 (133)
                      +.+||+.|||||++  .+..|+.++||||+||++++|++|..||.+....      .    ....+....   .......
T Consensus       315 ~~~GT~~y~APEv~--~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  382 (573)
T 3uto_A          315 VTTGTAEFAAPEVA--EGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD------E----TLRNVKSCDWNMDDSAFSG  382 (573)
T ss_dssp             EECSSGGGCCHHHH--TTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH------H----HHHHHHTTCCCCCSGGGTT
T ss_pred             eeEECccccCHHHh--CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH------H----HHHHHHhCCCCCCcccccC
Confidence            45799999999998  5678999999999999999999999999754321      1    111111111   1112233


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+....       .|+..||+.||.+||++.++++
T Consensus       383 ~s~~~~-------dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          383 ISEDGK-------DFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             SCHHHH-------HHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCHHHH-------HHHHHHccCChhHCcCHHHHhc
Confidence            455444       4445599999999999999987

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.73  E-value=3.8e-18  Score=110.10  Aligned_cols=99  Identities=25%  Similarity=0.351  Sum_probs=71.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+........+...+.
T Consensus       177 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  244 (325)
T 3kex_A          177 AKTPIKWMALESI--HFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAE----------VPDLLEKGERLAQPQICTI  244 (325)
T ss_dssp             --CCTTTSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTH----------HHHHHHTTCBCCCCTTBCT
T ss_pred             CCCcccccChHHh--ccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHH----------HHHHHHcCCCCCCCCcCcH
Confidence            4577899999998  55678999999999999999999 999987643321          2222333333333444455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      ...+       ++..||+.||.+||++.+|++.|+++..
T Consensus       245 ~~~~-------li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          245 DVYM-------VMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             TTTH-------HHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             HHHH-------HHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence            4444       4445999999999999999999887654

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.73  E-value=1.1e-17  Score=108.19  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             CCCccccccCccccccccCcccc------ccchhhhhHHHHHHHcc----------CCCCCCCCCCCCCcchhhhHHHHh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISH------KSDVYGFGMTVLELVGV----------RNNTASGVTHTSSTEMYFPDWFYK   66 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~------~~dv~s~g~~~~~l~~~----------~~p~~~~~~~~~~~~~~~~~~~~~   66 (133)
                      +.+||..|+|||++  .......      ++||||+|++++++++|          ..|+.......    .........
T Consensus       205 ~~~gt~~y~aPE~~--~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~----~~~~~~~~~  278 (337)
T 3mdy_A          205 TRVGTKRYMPPEVL--DESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSD----PSYEDMREI  278 (337)
T ss_dssp             SSCSCGGGCCHHHH--TTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS----CCHHHHHHH
T ss_pred             CCccCcceeChhhc--ccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCC----CchhhhHHH
Confidence            45799999999998  3333333      48999999999999999          44444332211    111111111


Q ss_pred             hhcCCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           67 LLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                      .......+..+....  .......+..++..||+.||++||++.+|++.|+++.+..+
T Consensus       279 ~~~~~~~~~~~~~~~--~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~  334 (337)
T 3mdy_A          279 VCIKKLRPSFPNRWS--SDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD  334 (337)
T ss_dssp             HTTSCCCCCCCGGGG--GSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTT
T ss_pred             HhhhccCccccccch--hhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcc
Confidence            111111111121111  11345567788888999999999999999999998876643

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.73  E-value=5.9e-18  Score=111.17  Aligned_cols=101  Identities=22%  Similarity=0.258  Sum_probs=71.5

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ +..||.......          ....+..+.....+...+. 
T Consensus       257 ~~~~~y~aPE~~--~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~----------~~~~~~~~~~~~~p~~~~~-  323 (373)
T 3c1x_A          257 KLPVKWMALESL--QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD----------ITVYLLQGRRLLQPEYCPD-  323 (373)
T ss_dssp             -CCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSC----------HHHHHHTTCCCCCCTTCCH-
T ss_pred             CCcccccChHHh--cCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHH----------HHHHHHcCCCCCCCCCCCH-
Confidence            467789999998  55678999999999999999999 566665543322          2222222323333444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                            .+..++..||+.||++||++.+|++.|+++.....
T Consensus       324 ------~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~  358 (373)
T 3c1x_A          324 ------PLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI  358 (373)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             ------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence                  34555666999999999999999999998876543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.73  E-value=7.5e-18  Score=114.25  Aligned_cols=99  Identities=27%  Similarity=0.364  Sum_probs=72.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||++  ....++.++||||||++++++++ |..||.......          ....+........+...+. 
T Consensus       380 ~~~~~y~aPE~~--~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  446 (495)
T 1opk_A          380 KFPIKWTAPESL--AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----------VYELLEKDYRMERPEGCPE-  446 (495)
T ss_dssp             CCCGGGCCHHHH--HHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG----------HHHHHHTTCCCCCCTTCCH-
T ss_pred             cCCcceeCHhHH--hcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHHcCCCCCCCCCCCH-
Confidence            456789999998  55688999999999999999998 888886543221          2222333333333444454 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            .+..++..||+.||++||++.+|++.|+++.+.
T Consensus       447 ------~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~  479 (495)
T 1opk_A          447 ------KVYELMRACWQWNPSDRPSFAEIHQAFETMFQE  479 (495)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred             ------HHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence                  345556669999999999999999999988754

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.73  E-value=4.8e-18  Score=111.12  Aligned_cols=47  Identities=23%  Similarity=0.324  Sum_probs=38.6

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ++.+||+.|+|||++.+ ...|+.++||||+||++++|++|+.||...
T Consensus       204 ~~~~GT~~Y~APE~l~~-~~~y~~~~DiWSlG~il~ell~G~~Pf~~~  250 (361)
T 4f9c_A          204 APRAGTPGFRAPEVLTK-CPNQTTAIDMWSAGVIFLSLLSGRYPFYKA  250 (361)
T ss_dssp             --CCCCGGGCCHHHHTT-CSCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             cccccCccccCHHHHcC-CCCCCCccchhhhHHHHHHHHHCCCCCCCC
Confidence            34689999999999832 235889999999999999999999998643

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.73  E-value=7.4e-18  Score=107.99  Aligned_cols=103  Identities=20%  Similarity=0.300  Sum_probs=72.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||.+  ....++.++||||+|+++++++++..++....................        ..+...+.
T Consensus       181 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  250 (310)
T 3s95_A          181 TVVGNPYWMAPEMI--NGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDR--------YCPPNCPP  250 (310)
T ss_dssp             CCCSCGGGCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHH--------TCCTTCCT
T ss_pred             ccCCCcceeCHHHh--cCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccc--------cCCCCCCH
Confidence            45799999999998  567889999999999999999999888765443321111111111111        11233344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .       +..++..||+.||++||++.+|++.|+++...
T Consensus       251 ~-------l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~  283 (310)
T 3s95_A          251 S-------FFPITVRCCDLDPEKRPSFVKLEHWLETLRMH  283 (310)
T ss_dssp             T-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHh
Confidence            3       44455569999999999999999999877654

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.72  E-value=1.3e-17  Score=106.64  Aligned_cols=110  Identities=22%  Similarity=0.335  Sum_probs=72.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc--cccccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE--DLKRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   81 (133)
                      ..||..|+|||.+   .+.++.++||||+|++++++++|..|+........     ...+.........  .........
T Consensus       195 ~~g~~~y~aPE~~---~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  266 (307)
T 2nru_A          195 IVGTTAYMAPEAL---RGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQL-----LLDIKEEIEDEEKTIEDYIDKKMN  266 (307)
T ss_dssp             CCSCGGGCCHHHH---TTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSB-----TTHHHHHHHTTSCCHHHHSCSSCS
T ss_pred             cCCCcCcCChHHh---cCCCCccchhHHHHHHHHHHHHCCCCcccCcchHH-----HHHHHHHhhhhhhhhhhhcccccc
Confidence            4689999999987   24578899999999999999999999876543221     0011111000000  000111112


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      .........+..++..||+.||.+||++.+|++.|+++.+
T Consensus       267 ~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          267 DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            2223445567788888999999999999999999988754

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.72  E-value=1.8e-18  Score=113.69  Aligned_cols=97  Identities=24%  Similarity=0.335  Sum_probs=70.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      ++..|+|||++  ....++.++||||+|++++|+++ |..||......      .    ....+..+.....+...+.  
T Consensus       277 ~~~~y~aPE~~--~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~--  342 (377)
T 3cbl_A          277 VPVKWTAPEAL--NYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ------Q----TREFVEKGGRLPCPELCPD--  342 (377)
T ss_dssp             EEGGGSCHHHH--HHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH------H----HHHHHHTTCCCCCCTTCCH--
T ss_pred             CCcCcCCHhHh--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH--
Confidence            46779999998  55688999999999999999998 88888653221      1    2222333333333444444  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                           .+..++..||+.||++||++.+|++.|+++..
T Consensus       343 -----~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~  374 (377)
T 3cbl_A          343 -----AVFRLMEQCWAYEPGQRPSFSTIYQELQSIRK  374 (377)
T ss_dssp             -----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHcCCCchhCcCHHHHHHHHHHHHh
Confidence                 34556666999999999999999999987643

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.72  E-value=3.5e-18  Score=108.43  Aligned_cols=104  Identities=17%  Similarity=0.232  Sum_probs=74.6

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++|+||+|++++++++ |..||......      .    ....+..+.....+...+. 
T Consensus       174 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~------~----~~~~i~~~~~~~~~~~~~~-  240 (287)
T 1u59_A          174 KWPLKWYAPECI--NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP------E----VMAFIEQGKRMECPPECPP-  240 (287)
T ss_dssp             CCCGGGCCHHHH--HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH------H----HHHHHHTTCCCCCCTTCCH-
T ss_pred             cccccccCHHHh--ccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH------H----HHHHHhcCCcCCCCCCcCH-
Confidence            467889999998  45678899999999999999998 99998654321      1    2222222333333444454 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPP  127 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~  127 (133)
                            .+..++..||+.||++||++.+|++.|+++..+...+.
T Consensus       241 ------~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~  278 (287)
T 1u59_A          241 ------ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV  278 (287)
T ss_dssp             ------HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcc
Confidence                  34455556999999999999999999998876654443

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.72  E-value=4.5e-18  Score=111.95  Aligned_cols=102  Identities=25%  Similarity=0.360  Sum_probs=73.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++ |..|+......      .    ....+........+...+.
T Consensus       253 ~~~t~~y~aPE~~--~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~  320 (382)
T 3tt0_A          253 GRLPVKWMAPEAL--FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE------E----LFKLLKEGHRMDKPSNCTN  320 (382)
T ss_dssp             CCCGGGGSCHHHH--HSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH------H----HHHHHHTTCCCCCCSSCCH
T ss_pred             CCCCcceeCHHHh--cCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCccCCH
Confidence            3467889999998  55678999999999999999999 88888653221      1    2223333333333444455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                      .       +..++..||+.||++||++.+|++.|+++.....
T Consensus       321 ~-------l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~  355 (382)
T 3tt0_A          321 E-------LYMMMRDCWHAVPSQRPTFKQLVEDLDRIVALTS  355 (382)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred             H-------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHh
Confidence            3       4455556999999999999999999998876543

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.72  E-value=6.4e-18  Score=109.19  Aligned_cols=99  Identities=19%  Similarity=0.275  Sum_probs=71.9

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+........+...+..
T Consensus       180 ~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  247 (327)
T 3lzb_A          180 KVPIKWMALESI--LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----------ISSILEKGERLPQPPICTID  247 (327)
T ss_dssp             CCCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----------HHHHHHTTCCCCCCTTBCHH
T ss_pred             CccccccCHHHH--cCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHH----------HHHHHHcCCCCCCCccCCHH
Confidence            467789999998  55678999999999999999999 999987643321          22222333333334444443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                             +..++..||+.||.+||++.+|++.|+++...
T Consensus       248 -------l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          248 -------VYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             -------HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence                   44555569999999999999999999877643

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.72  E-value=1.3e-18  Score=112.39  Aligned_cols=107  Identities=8%  Similarity=-0.011  Sum_probs=70.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||.......   .......+..    ............
T Consensus       176 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~---~~~~~~~i~~----~~~~~~~~~~~~  246 (330)
T 2izr_A          176 SLTGTARYMSINTH--LGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT---LKERYQKIGD----TKRATPIEVLCE  246 (330)
T ss_dssp             CCCSCTTTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS---HHHHHHHHHH----HHHHSCHHHHTT
T ss_pred             CcCCCccccChHHH--cCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc---HHHHHHHHHh----hhccCCHHHHhc
Confidence            45799999999998  55678999999999999999999999998654322   0000011100    000000000000


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                         ... .+..++..||+.||.+||++.+|.+.|+++...
T Consensus       247 ---~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~  282 (330)
T 2izr_A          247 ---NFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDR  282 (330)
T ss_dssp             ---TCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ---cCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence               011 566667779999999999999999988766543

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.72  E-value=9.8e-18  Score=114.62  Aligned_cols=102  Identities=22%  Similarity=0.296  Sum_probs=74.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||++  ....++.++||||||+++|++++ |..||......      .    ....+..+.....+...+. 
T Consensus       425 ~~~~~y~aPE~~--~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~------~----~~~~i~~~~~~~~~~~~~~-  491 (535)
T 2h8h_A          425 KFPIKWTAPEAA--LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR------E----VLDQVERGYRMPCPPECPE-  491 (535)
T ss_dssp             TSCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHH------H----HHHHHHTTCCCCCCTTCCH-
T ss_pred             cCcccccCHHHh--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCH-
Confidence            467789999998  55688999999999999999999 88888653221      1    2222233333333444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQV  125 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~  125 (133)
                            .+..++..||+.||++||++.+|+..|+++......
T Consensus       492 ------~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~~  527 (535)
T 2h8h_A          492 ------SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEP  527 (535)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCSC
T ss_pred             ------HHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccCc
Confidence                  345566669999999999999999999999876543

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.72  E-value=5.1e-18  Score=106.74  Aligned_cols=98  Identities=21%  Similarity=0.237  Sum_probs=68.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||......         ...............+...+. 
T Consensus       174 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-  241 (271)
T 3dtc_A          174 AAGAYAWMAPEVI--RASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGL---------AVAYGVAMNKLALPIPSTCPE-  241 (271)
T ss_dssp             --CCGGGSCHHHH--HHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHH---------HHHHHHHTSCCCCCCCTTCCH-
T ss_pred             CCCccceeCHHHh--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---------HHHHhhhcCCCCCCCCcccCH-
Confidence            4689999999998  4567899999999999999999999998653221         011112222222233344444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                            .+..++..||+.||++||++.++++.|+++
T Consensus       242 ------~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          242 ------PFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             ------HHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence                  344555569999999999999999999764

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.72  E-value=2.6e-18  Score=112.01  Aligned_cols=101  Identities=28%  Similarity=0.355  Sum_probs=72.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++ |..||.......         .....+........+...+.
T Consensus       255 ~~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  323 (359)
T 3vhe_A          255 ARLPLKWMAPETI--FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE---------EFCRRLKEGTRMRAPDYTTP  323 (359)
T ss_dssp             CEECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH---------HHHHHHHHTCCCCCCTTCCH
T ss_pred             cCCCceeEChhhh--cCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhH---------HHHHHHHcCCCCCCCCCCCH
Confidence            4578889999998  45678999999999999999998 999986543221         12222222223333444454


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .       +..++..||+.||++||++.+|++.|+++.+.
T Consensus       324 ~-------l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~  356 (359)
T 3vhe_A          324 E-------MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  356 (359)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHccCChhhCCCHHHHHHHHHHHHHH
Confidence            3       44555569999999999999999999887654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.71  E-value=6.1e-18  Score=109.59  Aligned_cols=102  Identities=16%  Similarity=0.219  Sum_probs=72.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++ |..||......      .    ....+..+.....+...+.
T Consensus       236 ~~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~  303 (343)
T 1luf_A          236 DAIPIRWMPPESI--FYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHE------E----VIYYVRDGNILACPENCPL  303 (343)
T ss_dssp             CCBCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH------H----HHHHHHTTCCCCCCTTCCH
T ss_pred             CcccceecChhhh--ccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChH------H----HHHHHhCCCcCCCCCCCCH
Confidence            4578889999988  45678999999999999999998 88888653221      1    2222222323333444444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                             .+..++..||+.||++||++.+|++.|+++.+...
T Consensus       304 -------~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          304 -------ELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             -------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred             -------HHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence                   34455566999999999999999999999876643

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.71  E-value=9e-18  Score=105.52  Aligned_cols=99  Identities=23%  Similarity=0.328  Sum_probs=70.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......          .............+...+..
T Consensus       166 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  233 (268)
T 3sxs_A          166 KFPVKWSAPEVF--HYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSE----------VVLKVSQGHRLYRPHLASDT  233 (268)
T ss_dssp             CCCGGGCCHHHH--HHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHH----------HHHHHHTTCCCCCCTTSCHH
T ss_pred             CcCcccCCHHHH--hccCCchhhhhHHHHHHHHHHHcCCCCCccccChHH----------HHHHHHcCCCCCCCCcChHH
Confidence            456779999998  55678999999999999999998 888886432211          22222223233334444443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                             +..++..||+.||++||++.++++.|+++.+.
T Consensus       234 -------l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          234 -------IYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             -------HHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             -------HHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence                   44555569999999999999999999988754

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.71  E-value=1.6e-17  Score=106.66  Aligned_cols=110  Identities=19%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             CCccccccCccccccc-------cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccc-
Q 040499            4 ARGTVSYIAPEVFCRN-------FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLK-   75 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~-------~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   75 (133)
                      ..||..|+|||++...       ...++.++||||+|++++++++|..||.......          ..........+. 
T Consensus       194 ~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~----------~~~~~~~~~~~~~  263 (319)
T 2y4i_B          194 QNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEA----------IIWQMGTGMKPNL  263 (319)
T ss_dssp             CSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHH----------HHHHHHTTCCCCC
T ss_pred             CCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH----------HHHHhccCCCCCC
Confidence            3588999999987321       2357889999999999999999999986532211          111111121111 


Q ss_pred             ccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCCCCC
Q 040499           76 RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKPF  130 (133)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~~~~  130 (133)
                      .....+..       +..++..||+.||++||++.+|++.|+++.........|.
T Consensus       264 ~~~~~~~~-------l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~~~~~~  311 (319)
T 2y4i_B          264 SQIGMGKE-------ISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRLSHPG  311 (319)
T ss_dssp             CCSSCCTT-------HHHHHHHHHCSSTTTSCCHHHHHHHHTTC-----------
T ss_pred             CcCCCCHH-------HHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhhccCCCCc
Confidence            12234444       3444555999999999999999999999988765555553

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.71  E-value=9.7e-18  Score=107.43  Aligned_cols=98  Identities=26%  Similarity=0.346  Sum_probs=71.4

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+........+...+..
T Consensus       213 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  280 (314)
T 2ivs_A          213 RIPVKWMAIESL--FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPER----------LFNLLKTGHRMERPDNCSEE  280 (314)
T ss_dssp             CSCGGGCCHHHH--HHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG----------HHHHHHTTCCCCCCTTCCHH
T ss_pred             CCcccccChhhh--cCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHhhcCCcCCCCccCCHH
Confidence            467889999988  45678999999999999999999 888886543321          22223333333334444543


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             +..++..||+.||++||++.+|++.|+++..
T Consensus       281 -------~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~  311 (314)
T 2ivs_A          281 -------MYRLMLQCWKQEPDKRPVFADISKDLEKMMV  311 (314)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                   4455556999999999999999999988754

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.71  E-value=8.4e-18  Score=106.41  Aligned_cols=98  Identities=22%  Similarity=0.295  Sum_probs=69.5

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||++  ....++.++||||+|++++++++ |..||.......          ....+........+...+..
T Consensus       178 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~----------~~~~i~~~~~~~~~~~~~~~  245 (281)
T 1mp8_A          178 KLPIKWMAPESI--NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND----------VIGRIENGERLPMPPNCPPT  245 (281)
T ss_dssp             -CCGGGCCHHHH--HHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----------HHHHHHTTCCCCCCTTCCHH
T ss_pred             CCcccccChhhc--ccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH----------HHHHHHcCCCCCCCCCCCHH
Confidence            456789999998  45678899999999999999996 888887543221          22222222222334444543


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             +..++..||+.||++||++.+|++.|+++.+
T Consensus       246 -------l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  276 (281)
T 1mp8_A          246 -------LYSLMTKCWAYDPSRRPRFTELKAQLSTILE  276 (281)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence                   4455556999999999999999999987754

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.71  E-value=9.4e-18  Score=109.06  Aligned_cols=107  Identities=11%  Similarity=0.049  Sum_probs=71.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc-----c
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR-----H   77 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~   77 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||.......    ..... .........+...     .
T Consensus       219 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~  291 (345)
T 2v62_A          219 GHNGTIEFTSLDAH--KGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDP----VAVQT-AKTNLLDELPQSVLKWAPS  291 (345)
T ss_dssp             CSCSCTTTCCHHHH--HTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCH----HHHHH-HHHHHHHTTTHHHHHHSCT
T ss_pred             ccCCCccccCHHHh--cCCCCCchhhHHHHHHHHHHHHhCCCCcccccccc----HHHHH-HHHhhcccccHHHHhhccc
Confidence            34689999999998  45678999999999999999999999986432211    11111 1111100000000     0


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      ...+.       .+..++..||+.||++||++.+|++.|++.....
T Consensus       292 ~~~~~-------~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  330 (345)
T 2v62_A          292 GSSCC-------EIAQFLVCAHSLAYDEKPNYQALKKILNPHGIPL  330 (345)
T ss_dssp             TSCCH-------HHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCCCC
T ss_pred             cccHH-------HHHHHHHHHhhcCcccCCCHHHHHHHHhccCCcc
Confidence            12333       4555566699999999999999999999876543

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.71  E-value=4.4e-18  Score=107.49  Aligned_cols=106  Identities=25%  Similarity=0.368  Sum_probs=71.5

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||......      .    ....+........+...+. 
T Consensus       171 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~-  237 (279)
T 1qpc_A          171 KFPIKWTAPEAI--NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNP------E----VIQNLERGYRMVRPDNCPE-  237 (279)
T ss_dssp             CCCTTTSCHHHH--HHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHH------H----HHHHHHTTCCCCCCTTCCH-
T ss_pred             CCccCccChhhh--ccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHH------H----HHHHHhcccCCCCcccccH-
Confidence            467789999998  55678899999999999999999 88888653221      1    2222222222233344444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPKP  129 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~~~  129 (133)
                            .+..++..||+.||++||++.+|++.|+++.........|
T Consensus       238 ------~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~  277 (279)
T 1qpc_A          238 ------ELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQYQP  277 (279)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC------
T ss_pred             ------HHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCCCCC
Confidence                  3445555699999999999999999999887665444433

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.71  E-value=7.4e-18  Score=106.61  Aligned_cols=98  Identities=22%  Similarity=0.358  Sum_probs=69.6

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+........+...++.
T Consensus       175 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  242 (281)
T 3cc6_A          175 RLPIKWMSPESI--NFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD----------VIGVLEKGDRLPKPDLCPPV  242 (281)
T ss_dssp             CCCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG----------HHHHHHHTCCCCCCTTCCHH
T ss_pred             CCCcceeCchhh--ccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH----------HHHHHhcCCCCCCCCCCCHH
Confidence            467789999998  55678899999999999999998 999986543221          11112222222233434443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             +..++..||+.||++||++.+|++.|+++.+
T Consensus       243 -------l~~li~~~l~~~p~~Rps~~ell~~L~~~~~  273 (281)
T 3cc6_A          243 -------LYTLMTRCWDYDPSDRPRFTELVCSLSDVYQ  273 (281)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHccCCchhCcCHHHHHHHHHHHHH
Confidence                   4455556999999999999999999987654

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.71  E-value=1e-17  Score=116.17  Aligned_cols=98  Identities=17%  Similarity=0.245  Sum_probs=72.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      +|+.|+|||++  ....++.++||||||+++||+++ |..||.......          ....+..+.....+...+.  
T Consensus       501 ~~~~y~APE~~--~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~----------~~~~i~~~~~~~~p~~~~~--  566 (613)
T 2ozo_A          501 WPLKWYAPECI--NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE----------VMAFIEQGKRMECPPECPP--  566 (613)
T ss_dssp             -CCTTSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHH----------HHHHHHTTCCCCCCTTCCH--
T ss_pred             CccceeCHhhh--cCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHH----------HHHHHHcCCCCCCCCcCCH--
Confidence            45789999998  55788999999999999999998 999987643221          2233333433344444454  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                           .+..++..||+.||++||++.+|++.|+.+...
T Consensus       567 -----~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~  599 (613)
T 2ozo_A          567 -----ELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  599 (613)
T ss_dssp             -----HHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence                 455566669999999999999999999887554

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.71  E-value=1.9e-18  Score=116.81  Aligned_cols=107  Identities=10%  Similarity=0.005  Sum_probs=72.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||.......  ....+.......... .........+.
T Consensus       172 ~~~gt~~Y~aPE~~--~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~--~~~~~~~i~~~~~~~-~~~~l~~~~p~  246 (483)
T 3sv0_A          172 NLTGTARYASVNTH--LGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT--KKQKYEKISEKKVAT-SIEALCRGYPT  246 (483)
T ss_dssp             CCCSCTTTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS--HHHHHHHHHHHHHHS-CHHHHHTTSCH
T ss_pred             ccCCCccccCHHHh--cCCCCChHHHHHHHHHHHHHHHhCCCCCccccchh--HHHHHHHHhhccccc-cHHHHhcCCcH
Confidence            45799999999998  56678999999999999999999999998654432  011111111111110 01111122333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             .+..++..||+.||++||++.+|++.|+++..
T Consensus       247 -------~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~  278 (483)
T 3sv0_A          247 -------EFASYFHYCRSLRFDDKPDYSYLKRLFRDLFI  278 (483)
T ss_dssp             -------HHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhcCChhhCcCHHHHHHHHHHHHH
Confidence                   45566666999999999999999998887643

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.71  E-value=7.3e-18  Score=106.04  Aligned_cols=99  Identities=24%  Similarity=0.371  Sum_probs=70.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+  ....++.++|+||+|++++++++ |..||......      .    ....+........+...+.
T Consensus       167 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~  234 (269)
T 4hcu_A          167 TKFPVKWASPEVF--SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS------E----VVEDISTGFRLYKPRLAST  234 (269)
T ss_dssp             TTCCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH------H----HHHHHHTTCCCCCCTTSCH
T ss_pred             cccccccCCHHHh--cCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHH------H----HHHHHhcCccCCCCCcCCH
Confidence            3467789999998  55678999999999999999999 88888653221      1    2222222223333444444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      .       +..++..||+.||.+||++.++++.|+++.+
T Consensus       235 ~-------~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~  266 (269)
T 4hcu_A          235 H-------VYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  266 (269)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence            3       4455555999999999999999999987754

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.71  E-value=9.9e-18  Score=107.90  Aligned_cols=100  Identities=26%  Similarity=0.298  Sum_probs=71.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+........+...+..
T Consensus       200 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  267 (323)
T 3qup_A          200 KLPVKWLALESL--ADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAE----------IYNYLIGGNRLKQPPECMEE  267 (323)
T ss_dssp             -CCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----------HHHHHHTTCCCCCCTTCCHH
T ss_pred             cCcccccCchhh--cCCCCCCccchhhHHHHHHHHHhCCCCCccccChHH----------HHHHHhcCCCCCCCCccCHH
Confidence            456789999998  55678999999999999999999 888887543321          22222222222333444443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                             +..++..||+.||.+||++.++++.|+++....
T Consensus       268 -------l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          268 -------VYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             -------HHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             -------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence                   445556699999999999999999999887664

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.70  E-value=5e-18  Score=111.08  Aligned_cols=106  Identities=9%  Similarity=0.027  Sum_probs=70.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc----c-ccC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL----K-RHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~   78 (133)
                      .+||..|+|||++  ....++.++||||+|++++++++|..||.......     ................    . ...
T Consensus       221 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  293 (364)
T 3op5_A          221 HDGTIEFTSIDAH--NGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDP-----KYVRDSKIRYRENIASLMDKCFPAA  293 (364)
T ss_dssp             CCCCTTTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH-----HHHHHHHHHHHHCHHHHHHHHSCTT
T ss_pred             cCCCCCccCHHHh--CCCCCCchhhHHHHHHHHHHHHhCCCCccccccCH-----HHHHHHHHHhhhhHHHHHHHhcccc
Confidence            4599999999998  55678999999999999999999999997532211     1111111000000000    0 012


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      ..+.       .+..++..||+.||.+||++.+|++.|+++.+..
T Consensus       294 ~~~~-------~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~  331 (364)
T 3op5_A          294 NAPG-------EIAKYMETVKLLDYTEKPLYENLRDILLQGLKAI  331 (364)
T ss_dssp             CCCH-------HHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             cCHH-------HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHc
Confidence            2233       4555666699999999999999999988776543

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.70  E-value=2.5e-17  Score=104.91  Aligned_cols=102  Identities=23%  Similarity=0.268  Sum_probs=71.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHcc-CCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGV-RNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+  ....++.++|+||+|+++++++++ .+|+.......          .............+...+.
T Consensus       192 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~  259 (298)
T 3f66_A          192 AKLPVKWMALESL--QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFD----------ITVYLLQGRRLLQPEYCPD  259 (298)
T ss_dssp             CCBCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTT----------HHHHHHTTCCCCCCTTCCH
T ss_pred             CCCCccccChHHh--cCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHH----------HHHHHhcCCCCCCCccCCH
Confidence            3567789999998  556788999999999999999994 45554433221          2222222223333444454


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                      .       +..++..||+.||++||++.++++.|+++.....
T Consensus       260 ~-------l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~  294 (298)
T 3f66_A          260 P-------LYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI  294 (298)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSC
T ss_pred             H-------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence            3       4455556999999999999999999998876643

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.70  E-value=1.2e-17  Score=106.21  Aligned_cols=100  Identities=22%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||......      .    ....+........+...+..
T Consensus       181 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~  248 (291)
T 1xbb_A          181 KWPVKWYAPECI--NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS------E----VTAMLEKGERMGCPAGCPRE  248 (291)
T ss_dssp             CCCGGGCCHHHH--HHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH------H----HHHHHHTTCCCCCCTTCCHH
T ss_pred             CCCceeeChHHh--ccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH------H----HHHHHHcCCCCCCCCCCCHH
Confidence            356789999998  45678899999999999999998 99998654221      1    22222223333334444543


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                             +..++..||+.||++||++.+|++.|+++....
T Consensus       249 -------l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~  281 (291)
T 1xbb_A          249 -------MYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  281 (291)
T ss_dssp             -------HHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHH
Confidence                   445555699999999999999999999876543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.70  E-value=1.3e-17  Score=106.87  Aligned_cols=101  Identities=29%  Similarity=0.351  Sum_probs=71.6

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .|+..|+|||.+  ....++.++||||+|++++++++ |..|+.......          .............+...+. 
T Consensus       210 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  276 (313)
T 3brb_A          210 KMPVKWIAIESL--ADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE----------MYDYLLHGHRLKQPEDCLD-  276 (313)
T ss_dssp             -CCGGGSCHHHH--HSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG----------HHHHHHTTCCCCCBTTCCH-
T ss_pred             CCCccccCchhh--cCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHH----------HHHHHHcCCCCCCCccccH-
Confidence            467789999998  56678999999999999999999 777876543221          2222222222333444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                            .+..++..||+.||++||++.+|++.|+++.+..+
T Consensus       277 ------~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp  311 (313)
T 3brb_A          277 ------ELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP  311 (313)
T ss_dssp             ------HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred             ------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence                  34455566999999999999999999998876543

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.70  E-value=4.4e-17  Score=107.61  Aligned_cols=97  Identities=19%  Similarity=0.337  Sum_probs=64.7

Q ss_pred             CCCccccccCccccccc---------cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc
Q 040499            3 DARGTVSYIAPEVFCRN---------FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED   73 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~---------~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (133)
                      ..+||+.|+|||++...         ...++.++||||+|++++++++|..||......        .............
T Consensus       215 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~--------~~~~~~~~~~~~~  286 (390)
T 2zmd_A          215 SQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ--------ISKLHAIIDPNHE  286 (390)
T ss_dssp             CSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--------HHHHHHHHCTTSC
T ss_pred             CCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHH--------HHHHHHHhCcccc
Confidence            45799999999987321         136888999999999999999999999643211        1112222222222


Q ss_pred             ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           74 LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+...+..       +..++..||+.||.+||++.+|++
T Consensus       287 ~~~~~~~~~~-------~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          287 IEFPDIPEKD-------LQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             CCCCCCSCHH-------HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCCccchHH-------HHHHHHHHcccChhhCCCHHHHhh
Confidence            2333333443       445555699999999999999985

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.70  E-value=4.7e-17  Score=103.37  Aligned_cols=106  Identities=19%  Similarity=0.226  Sum_probs=68.4

Q ss_pred             CCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+.. ....++.++||||+|++++++++|..||......     .......................+.
T Consensus       182 ~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  256 (289)
T 3og7_A          182 LSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR-----DQIIEMVGRGSLSPDLSKVRSNCPK  256 (289)
T ss_dssp             --CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH-----HHHHHHHHHTSCCCCTTSSCTTSCH
T ss_pred             cCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH-----HHHHHHhcccccCcchhhccccCCH
Confidence            468999999998731 1456788999999999999999999998754321     1111111111000001111222333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             .+..++..||+.||.+||++.+|++.|+++.+
T Consensus       257 -------~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          257 -------RMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             -------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence                   45556666999999999999999999998764

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.70  E-value=2.3e-17  Score=106.88  Aligned_cols=114  Identities=17%  Similarity=0.122  Sum_probs=72.3

Q ss_pred             CCccccccCccccccccC----ccccccchhhhhHHHHHHHcc----------CCCCCCCCCCCCCcchhhhHHHHhhhc
Q 040499            4 ARGTVSYIAPEVFCRNFG----GISHKSDVYGFGMTVLELVGV----------RNNTASGVTHTSSTEMYFPDWFYKLLE   69 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~----~~~~~~dv~s~g~~~~~l~~~----------~~p~~~~~~~~~~~~~~~~~~~~~~~~   69 (133)
                      ..||..|+|||.+.....    .++.++||||+|++++++++|          ..||.......    .....+......
T Consensus       211 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~  286 (342)
T 1b6c_B          211 RVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSD----PSVEEMRKVVCE  286 (342)
T ss_dssp             CCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS----CCHHHHHHHHTT
T ss_pred             CCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCc----ccHHHHHHHHHH
Confidence            468999999998832110    344789999999999999998          45654432211    111111111222


Q ss_pred             CCccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           70 PGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      ....+..+...  ........+..++..||+.||++||++.+|++.|+++.+..
T Consensus       287 ~~~~~~~~~~~--~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~  338 (342)
T 1b6c_B          287 QKLRPNIPNRW--QSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE  338 (342)
T ss_dssp             SCCCCCCCGGG--GTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             HHhCCCCcccc--cchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence            22222222211  11244556778888899999999999999999999876553

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.70  E-value=3.4e-17  Score=104.52  Aligned_cols=95  Identities=15%  Similarity=0.191  Sum_probs=65.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||......      ........  ........+...+.
T Consensus       175 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~  244 (297)
T 3fxz_A          175 TMVGTPYWMAPEVV--TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL------RALYLIAT--NGTPELQNPEKLSA  244 (297)
T ss_dssp             CCCSCGGGCCHHHH--HCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH------HHHHHHHH--HCSCCCSCGGGSCH
T ss_pred             CccCCcCccChhhh--cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHh--CCCCCCCCccccCH
Confidence            35799999999998  5667899999999999999999999998654221      00000111  11111122333444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       +..++..||+.||++||++.++++
T Consensus       245 ~-------~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          245 I-------FRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             H-------HHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             H-------HHHHHHHHccCChhHCcCHHHHhh
Confidence            3       444555599999999999999986

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.69  E-value=1.3e-17  Score=108.24  Aligned_cols=102  Identities=26%  Similarity=0.368  Sum_probs=70.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......     .    ....+........+...+..
T Consensus       235 ~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~  303 (344)
T 1rjb_A          235 RLPVKWMAPESL--FEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA-----N----FYKLIQNGFKMDQPFYATEE  303 (344)
T ss_dssp             EECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH-----H----HHHHHHTTCCCCCCTTCCHH
T ss_pred             cCccCccCHHHh--ccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCcHH-----H----HHHHHhcCCCCCCCCCCCHH
Confidence            467789999988  45678999999999999999998 888986543221     1    22222223233334444443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                             +..++..||+.||.+||++.+|++.|+.+.....
T Consensus       304 -------l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~  337 (344)
T 1rjb_A          304 -------IYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAE  337 (344)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHC----
T ss_pred             -------HHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHH
Confidence                   4455566999999999999999999998876643

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.69  E-value=1.4e-17  Score=107.78  Aligned_cols=99  Identities=19%  Similarity=0.298  Sum_probs=69.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||......      .    ....+..+.....+...+. 
T Consensus       211 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~------~----~~~~~~~~~~~~~~~~~~~-  277 (333)
T 1mqb_A          211 KIPIRWTAPEAI--SYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNH------E----VMKAINDGFRLPTPMDCPS-  277 (333)
T ss_dssp             CCCGGGSCHHHH--HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH------H----HHHHHHTTCCCCCCTTCBH-
T ss_pred             CccccccCchhc--ccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHH------H----HHHHHHCCCcCCCcccCCH-
Confidence            356789999998  55678899999999999999998 88888653221      1    2222222222222333333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            .+..++..||+.||++||++.+|++.|+++...
T Consensus       278 ------~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~  310 (333)
T 1mqb_A          278 ------AIYQLMMQCWQQERARRPKFADIVSILDKLIRA  310 (333)
T ss_dssp             ------HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             ------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence                  345566669999999999999999988876544

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.69  E-value=4.3e-17  Score=107.44  Aligned_cols=46  Identities=20%  Similarity=0.215  Sum_probs=39.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..+||.+|+|||++.+ ...++.++||||+|++++++++|..||.+.
T Consensus       189 ~~~gt~~y~aPE~~~~-~~~~~~~~DiwSlG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          189 DYVATRWYRAPEILLG-STKYTKGIDMWSLGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             -CCCGGGGCCHHHHTT-CCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcccCCcCCHHHhcC-CCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence            4589999999998832 257899999999999999999999999754

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.69  E-value=5.8e-18  Score=109.23  Aligned_cols=101  Identities=20%  Similarity=0.280  Sum_probs=71.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++ |..||......      .    ....+........+...+.
T Consensus       205 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~  272 (327)
T 2yfx_A          205 AMLPVKWMPPEAF--MEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQ------E----VLEFVTSGGRMDPPKNCPG  272 (327)
T ss_dssp             GGSCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH------H----HHHHHHTTCCCCCCTTCCH
T ss_pred             cCCCcceeCHhHh--cCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHH------H----HHHHHhcCCCCCCCCCCCH
Confidence            3578899999988  45678999999999999999998 88887643211      1    2222222222223333444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                             .+..++..||+.||.+||++.+|++.|+.+....
T Consensus       273 -------~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          273 -------PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             -------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             -------HHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence                   3445556699999999999999999988776543

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.69  E-value=2.7e-17  Score=103.88  Aligned_cols=98  Identities=22%  Similarity=0.210  Sum_probs=70.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .|+..|+|||.+  ....++.++||||+|++++++++ |..|+.......          ....+........+...+..
T Consensus       175 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  242 (278)
T 1byg_A          175 KLPVKWTAPEAL--REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD----------VVPRVEKGYKMDAPDGCPPA  242 (278)
T ss_dssp             -CCTTTSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG----------HHHHHTTTCCCCCCTTCCHH
T ss_pred             CccccccCHHHh--CCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHhcCCCCCCcccCCHH
Confidence            467889999998  45678899999999999999998 888886543211          22223333333334444443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             +..++..||+.||++||++.++++.|+++..
T Consensus       243 -------l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~  273 (278)
T 1byg_A          243 -------VYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  273 (278)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHhcCChhhCCCHHHHHHHHHHHHh
Confidence                   4455555999999999999999999987654

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.69  E-value=1.4e-17  Score=108.44  Aligned_cols=108  Identities=14%  Similarity=0.085  Sum_probs=72.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc----cCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR----HGL   79 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   79 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||.......    ...................    ...
T Consensus       228 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (352)
T 2jii_A          228 HEGDLEFISMDLH--KGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNT----EDIMKQKQKFVDKPGPFVGPCGHWIR  301 (352)
T ss_dssp             TCSCTTTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH----HHHHHHHHHHHHSCCCEECTTSCEEC
T ss_pred             ccCCccccCHHHH--ccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCH----HHHHHHHHhccCChhhhhhhccccCC
Confidence            4799999999998  55678999999999999999999999987543211    1111111111111111100    012


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                      .+.       .+..++..||+.||++||++.+|++.|+++.+...
T Consensus       302 ~~~-------~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~  339 (352)
T 2jii_A          302 PSE-------TLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR  339 (352)
T ss_dssp             CCH-------HHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred             CcH-------HHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence            234       34455556999999999999999999998876653

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.69  E-value=1.8e-17  Score=115.32  Aligned_cols=98  Identities=21%  Similarity=0.248  Sum_probs=71.4

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||++  ....++.++||||+|++++++++ |..||.......          ....+..+.....+...+. 
T Consensus       533 ~~t~~y~APE~~--~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~----------~~~~i~~~~~~~~p~~~~~-  599 (635)
T 4fl3_A          533 KWPVKWYAPECI--NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE----------VTAMLEKGERMGCPAGCPR-  599 (635)
T ss_dssp             --CGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHH----------HHHHHHTTCCCCCCTTCCH-
T ss_pred             CCceeeeChhhh--cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHHcCCCCCCCCCCCH-
Confidence            467789999998  56688999999999999999998 999987543211          2233333333334444454 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||+.||++||++.+|++.|+++..
T Consensus       600 ------~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~  631 (635)
T 4fl3_A          600 ------EMYDLMNLCWTYDVENRPGFAAVELRLRNYYY  631 (635)
T ss_dssp             ------HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence                  45556666999999999999999999987653

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.69  E-value=1.6e-17  Score=104.18  Aligned_cols=99  Identities=24%  Similarity=0.371  Sum_probs=69.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||++  ....++.++|+||+|++++++++ |..||......      .    ....+........+...+.
T Consensus       165 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~------~----~~~~i~~~~~~~~~~~~~~  232 (267)
T 3t9t_A          165 TKFPVKWASPEVF--SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNS------E----VVEDISTGFRLYKPRLAST  232 (267)
T ss_dssp             TTCCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH------H----HHHHHHTTCCCCCCTTSCH
T ss_pred             ccccccccChhhh--cCCCccchhchhhhHHHHHHHhccCCCCCCCCCHH------H----HHHHHhcCCcCCCCccCcH
Confidence            3467789999998  45678899999999999999999 78888643211      1    1222222222223343444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      .       +..++..||+.||++||++.++++.|+++.+
T Consensus       233 ~-------l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          233 H-------VYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            3       4455566999999999999999999988754

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.69  E-value=4e-17  Score=103.86  Aligned_cols=103  Identities=23%  Similarity=0.304  Sum_probs=71.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..|+......     ..    .............+...+..
T Consensus       188 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~  256 (298)
T 3pls_A          188 ARLPVKWTALESL--QTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP-----FD----LTHFLAQGRRLPQPEYCPDS  256 (298)
T ss_dssp             TTCGGGGSCHHHH--TTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG-----GG----HHHHHHTTCCCCCCTTCCHH
T ss_pred             CCCCccccChhhh--ccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH-----HH----HHHHhhcCCCCCCCccchHH
Confidence            4578899999998  5667899999999999999999966654332211     11    22222222233334444443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                             +..++..||+.||.+||++.++++.|+++.+...
T Consensus       257 -------l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~  290 (298)
T 3pls_A          257 -------LYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALL  290 (298)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHh
Confidence                   4455566999999999999999999998877654

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.69  E-value=5.6e-17  Score=105.35  Aligned_cols=97  Identities=20%  Similarity=0.355  Sum_probs=63.7

Q ss_pred             CCCccccccCcccccc---------ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc
Q 040499            3 DARGTVSYIAPEVFCR---------NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED   73 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~---------~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (133)
                      ..+||+.|+|||++..         ....++.++||||+|++++++++|..||......        .............
T Consensus       168 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--------~~~~~~~~~~~~~  239 (343)
T 3dbq_A          168 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ--------ISKLHAIIDPNHE  239 (343)
T ss_dssp             --CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSH--------HHHHHHHHCTTSC
T ss_pred             CCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhH--------HHHHHHHhcCCcc
Confidence            3579999999998732         1256788999999999999999999998643221        1112222222223


Q ss_pred             ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           74 LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+...+..       +..++..||+.||.+||++.++++
T Consensus       240 ~~~~~~~~~~-------l~~li~~~L~~dp~~Rpt~~e~l~  273 (343)
T 3dbq_A          240 IEFPDIPEKD-------LQDVLKCCLKRDPKQRISIPELLA  273 (343)
T ss_dssp             CCCCCCSCHH-------HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             cCCcccCCHH-------HHHHHHHHcCCChhHCCCHHHHHh
Confidence            3334444443       445555599999999999999985

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.69  E-value=2.9e-17  Score=105.18  Aligned_cols=107  Identities=17%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc-cCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR-HGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   82 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||......       ... ....+.....+.. ....+.
T Consensus       196 ~~~~~~y~aPE~~--~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~  265 (310)
T 2wqm_A          196 LVGTPYYMSPERI--HENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN-------LYS-LCKKIEQCDYPPLPSDHYSE  265 (310)
T ss_dssp             ---CCSSCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC-------HHH-HHHHHHTTCSCCCCTTTSCH
T ss_pred             cCCCeeEeChHHh--CCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh-------HHH-HHHHhhcccCCCCcccccCH
Confidence            4588999999988  5567889999999999999999999998653221       011 1111111111111 123344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPP  127 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~  127 (133)
                             .+..++..||+.||++||++.+|++.|+++.....+++
T Consensus       266 -------~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~~  303 (310)
T 2wqm_A          266 -------ELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASSL  303 (310)
T ss_dssp             -------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC---
T ss_pred             -------HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhhh
Confidence                   34455566999999999999999999998877655444

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.68  E-value=2.4e-17  Score=104.90  Aligned_cols=110  Identities=18%  Similarity=0.255  Sum_probs=72.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCC------CCCcchhhhHHHHhhhcCCccccccC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTH------TSSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      .||..|+|||.+  ....++.++||||+|+++++++++..|+......      ...............+........+.
T Consensus       178 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (295)
T 3ugc_A          178 ESPIFWYAPESL--TESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD  255 (295)
T ss_dssp             TCGGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCT
T ss_pred             CCccceeCcHHh--cCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCCc
Confidence            467779999998  5567899999999999999999998877542110      00001111111222233333333344


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      ..+.       .+..++..||+.||++||++.+|++.|+++....
T Consensus       256 ~~~~-------~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          256 GCPD-------EIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             TCCH-------HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             CcCH-------HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            4454       3445556699999999999999999998876543

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.68  E-value=9.7e-18  Score=110.14  Aligned_cols=98  Identities=16%  Similarity=0.272  Sum_probs=67.4

Q ss_pred             ccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            6 GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         6 gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      +|..|+|||++  ....++.++||||+|++++++++ |..||......      .    ....+..+.....+...+.  
T Consensus       212 ~~~~y~aPE~~--~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~------~----~~~~i~~~~~~~~~~~~~~--  277 (373)
T 2qol_A          212 IPIRWTSPEAI--AYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ------D----VIKAVDEGYRLPPPMDCPA--  277 (373)
T ss_dssp             --CTTSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH------H----HHHHHHTTEECCCCTTCBH--
T ss_pred             cCCCccChhhh--ccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCccccH--
Confidence            46689999998  55678999999999999999987 88898654221      1    2222222222222232333  


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                           .+..++..||+.||++||++.+|++.|+++.+.
T Consensus       278 -----~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  310 (373)
T 2qol_A          278 -----ALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRN  310 (373)
T ss_dssp             -----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             -----HHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhC
Confidence                 455666779999999999999999999877543

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.68  E-value=1.3e-17  Score=106.96  Aligned_cols=100  Identities=26%  Similarity=0.348  Sum_probs=71.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||++  ....++.++||||+|++++++++ |..||.......     .    ....+........+...+. 
T Consensus       211 ~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~-  278 (316)
T 2xir_A          211 RLPLKWMAPETI--FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDE-----E----FCRRLKEGTRMRAPDYTTP-  278 (316)
T ss_dssp             EECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSH-----H----HHHHHHHTCCCCCCTTCCH-
T ss_pred             CcceeecCchhh--ccccccchhHHHHHHHHHHHHHhCCCCCCcccchhH-----H----HHHHhccCccCCCCCCCCH-
Confidence            467889999998  45678999999999999999998 888886543211     1    1122222222233333444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            .+..++..||+.||.+||++.+|++.|+++.+.
T Consensus       279 ------~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  311 (316)
T 2xir_A          279 ------EMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  311 (316)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence                  345555669999999999999999999887654

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.68  E-value=1.7e-17  Score=106.26  Aligned_cols=100  Identities=21%  Similarity=0.349  Sum_probs=70.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......     .    .............+...+. 
T Consensus       208 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~-  275 (313)
T 1t46_A          208 RLPVKWMAPESI--FNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS-----K----FYKMIKEGFRMLSPEHAPA-  275 (313)
T ss_dssp             EECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH-----H----HHHHHHHTCCCCCCTTSCH-
T ss_pred             CCcceeeChHHh--cCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchh-----H----HHHHhccCCCCCCcccCCH-
Confidence            467789999988  45678999999999999999998 888886543211     1    1111222222222333444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            .+..++..||+.||.+||++.+|++.|+++...
T Consensus       276 ------~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  308 (313)
T 1t46_A          276 ------EMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (313)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence                  344555669999999999999999999987654

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.68  E-value=3e-17  Score=113.93  Aligned_cols=97  Identities=16%  Similarity=0.169  Sum_probs=67.5

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      .+.+||+.|||||++. ....|+.++|+||+||+++||++|..||.+.....    .  .........  .....+...+
T Consensus       348 ~t~~GTp~YmAPEvl~-~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~----~--~~i~~~i~~--~~~~~p~~~S  418 (689)
T 3v5w_A          348 HASVGTHGYMAPEVLQ-KGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD----K--HEIDRMTLT--MAVELPDSFS  418 (689)
T ss_dssp             CSCCSCGGGCCHHHHS-TTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC----H--HHHHHHHHH--CCCCCCTTSC
T ss_pred             CCccCCcCccCHHHHh-CCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH----H--HHHHHhhcC--CCCCCCccCC
Confidence            4578999999999983 13468999999999999999999999997543221    1  011111111  1223455567


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                      ....+++.+       ||+.||++|++     +.+|++
T Consensus       419 ~~a~dLI~~-------lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          419 PELRSLLEG-------LLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             HHHHHHHHH-------HTCSCGGGCTTCSSSTHHHHTT
T ss_pred             HHHHHHHHH-------HccCCHhHCCCCCCCCHHHHhc
Confidence            766666665       88999999998     678764

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.68  E-value=1.9e-17  Score=104.76  Aligned_cols=98  Identities=19%  Similarity=0.310  Sum_probs=70.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+........+...++ 
T Consensus       182 ~~~~~y~aPE~~--~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-  248 (283)
T 3gen_A          182 KFPVRWSPPEVL--MYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE----------TAEHIAQGLRLYRPHLASE-  248 (283)
T ss_dssp             TSCGGGCCHHHH--HHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH----------HHHHHHTTCCCCCCTTCCH-
T ss_pred             ccCcccCCHHHh--ccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhH----------HHHHHhcccCCCCCCcCCH-
Confidence            467789999998  45678999999999999999998 888986543211          2222222323333444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||+.||++||++.++++.|+++..
T Consensus       249 ------~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~  280 (283)
T 3gen_A          249 ------KVYTIMYSCWHEKADERPTFKILLSNILDVMD  280 (283)
T ss_dssp             ------HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHccCChhHCcCHHHHHHHHHHHhh
Confidence                  34455566999999999999999999987654

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.68  E-value=2.8e-17  Score=106.01  Aligned_cols=100  Identities=23%  Similarity=0.330  Sum_probs=70.6

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .++..|+|||.+  ....++.++||||+|++++++++ |..||.......          ....+..+.....+...+..
T Consensus       202 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  269 (327)
T 1fvr_A          202 RLPVRWMAIESL--NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAE----------LYEKLPQGYRLEKPLNCDDE  269 (327)
T ss_dssp             -CCTTTCCHHHH--HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHH----------HHHHGGGTCCCCCCTTBCHH
T ss_pred             CCCccccChhhh--ccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHH----------HHHHhhcCCCCCCCCCCCHH
Confidence            467789999998  55678899999999999999998 989986542211          22222222222233334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                             +..++..||+.||.+||++.++++.|+++....
T Consensus       270 -------l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  302 (327)
T 1fvr_A          270 -------VYDLMRQCWREKPYERPSFAQILVSLNRMLEER  302 (327)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             -------HHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence                   445555699999999999999999888776554

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.68  E-value=3.8e-17  Score=105.11  Aligned_cols=98  Identities=19%  Similarity=0.308  Sum_probs=69.1

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||++  ....++.++||||+|++++++++ +..|+......      .    ....+........+...+..
T Consensus       201 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~  268 (322)
T 1p4o_A          201 LLPVRWMSPESL--KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE------Q----VLRFVMEGGLLDKPDNCPDM  268 (322)
T ss_dssp             EECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH------H----HHHHHHTTCCCCCCTTCCHH
T ss_pred             CCCCCccChhhh--ccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHH------H----HHHHHHcCCcCCCCCCCCHH
Confidence            467889999998  45678899999999999999999 77887653221      1    22222222222233444443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             +..++..||+.||.+||++.++++.|++...
T Consensus       269 -------l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          269 -------LFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             -------HHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence                   4455556999999999999999999988744

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.68  E-value=1.7e-17  Score=107.40  Aligned_cols=99  Identities=25%  Similarity=0.371  Sum_probs=70.2

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||++  ....++.++||||+|++++++++ |..||......      .    ....+........+...+. 
T Consensus       220 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~-  286 (334)
T 2pvf_A          220 RLPVKWMAPEAL--FDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVE------E----LFKLLKEGHRMDKPANCTN-  286 (334)
T ss_dssp             CCCGGGCCHHHH--HHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHH------H----HHHHHHHTCCCCCCTTCCH-
T ss_pred             CcccceeChHHh--cCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHH------H----HHHHHhcCCCCCCCccCCH-
Confidence            467789999988  45678899999999999999999 88888653211      1    1122222222223333444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            .+..++..||+.||.+||++.+|++.|+++.+.
T Consensus       287 ------~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~  319 (334)
T 2pvf_A          287 ------ELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL  319 (334)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence                  344555669999999999999999999988654

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.68  E-value=2e-17  Score=106.92  Aligned_cols=100  Identities=21%  Similarity=0.369  Sum_probs=69.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++ |..||.......     .    .............+...+.
T Consensus       226 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~  294 (333)
T 2i1m_A          226 ARLPVKWMAPESI--FDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNS-----K----FYKLVKDGYQMAQPAFAPK  294 (333)
T ss_dssp             CEECGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSH-----H----HHHHHHHTCCCCCCTTCCH
T ss_pred             CCCCccccCHHHh--ccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhH-----H----HHHHHhcCCCCCCCCCCCH
Confidence            3467789999988  45678999999999999999998 888886543211     1    1112222222222333344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             .+..++..||+.||.+||++.+|++.|+++..
T Consensus       295 -------~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~  326 (333)
T 2i1m_A          295 -------NIYSIMQACWALEPTHRPTFQQICSFLQEQAQ  326 (333)
T ss_dssp             -------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhccChhhCcCHHHHHHHHHHHHH
Confidence                   34556666999999999999999999987653

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.68  E-value=7.2e-18  Score=108.49  Aligned_cols=114  Identities=25%  Similarity=0.257  Sum_probs=74.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCC-----CCcchhhhHHHHhhhcCCccccccC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHT-----SSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..|+.......     ..............+........+.
T Consensus       197 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (318)
T 3lxp_A          197 GDSPVFWYAPECL--KEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPD  274 (318)
T ss_dssp             CCCCGGGCCHHHH--HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCT
T ss_pred             CCCCceeeChHHh--cCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCc
Confidence            3477889999998  55678899999999999999999998875421100     0000000111222223333333344


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCC
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVP  126 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~  126 (133)
                      ..+.       .+..++..||+.||++||++.+|++.|+++.+..+.+
T Consensus       275 ~~~~-------~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~  315 (318)
T 3lxp_A          275 KCPA-------EVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ  315 (318)
T ss_dssp             TCCH-------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred             cccH-------HHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence            4444       3445555699999999999999999999887765433

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.67  E-value=1.3e-16  Score=105.73  Aligned_cols=100  Identities=16%  Similarity=0.132  Sum_probs=62.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||++  ....++.++||||+|++++++++|..||...........  ....+.. .............+.
T Consensus       222 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~--~~~~i~~-~~~~~~~~~~~~~s~  296 (400)
T 1nxk_A          222 TPCYTPYYVAPEVL--GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG--MKTRIRM-GQYEFPNPEWSEVSE  296 (400)
T ss_dssp             -----CTTCCGGGS--CCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCS--HHHHHHH-TCCCCCTTTTTTSCH
T ss_pred             cCCCCCCccCHhhc--CCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHH--HHHHHHc-CcccCCCcccccCCH
Confidence            45789999999998  567889999999999999999999999976543221111  1111110 000000000122333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||+.||++||++.+|++
T Consensus       297 -------~~~~li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          297 -------EVKMLIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             -------HHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             -------HHHHHHHHHCCCChhHCcCHHHHhc
Confidence                   3455566699999999999999986

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.67  E-value=4.2e-17  Score=103.38  Aligned_cols=98  Identities=27%  Similarity=0.361  Sum_probs=69.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..|+.......          ....+........+...+..
T Consensus       173 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~  240 (288)
T 3kfa_A          173 KFPIKWTAPESL--AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQ----------VYELLEKDYRMERPEGCPEK  240 (288)
T ss_dssp             EECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGG----------HHHHHHTTCCCCCCTTCCHH
T ss_pred             ccccCcCChhhh--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHH----------HHHHHhccCCCCCCCCCCHH
Confidence            356789999998  55678999999999999999999 888886543221          22222222233334444543


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                             +..++..||+.||.+||++.+|++.|+++..
T Consensus       241 -------l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~  271 (288)
T 3kfa_A          241 -------VYELMRACWQWNPSDRPSFAEIHQAFETMFQ  271 (288)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence                   4455555999999999999999999887654

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.67  E-value=3.7e-16  Score=104.77  Aligned_cols=93  Identities=23%  Similarity=0.295  Sum_probs=64.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccc--cCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKR--HGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~   79 (133)
                      +.+||+.|+|||++  ....++.++||||+|++++++++|..||......      .    ....+..+. ....  ...
T Consensus       172 ~~~gt~~Y~APE~l--~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  239 (444)
T 3soa_A          172 GFAGTPGYLSPEVL--RKDPYGKPVDLWACGVILYILLVGYPPFWDEDQH------R----LYQQIKAGAYDFPSPEWDT  239 (444)
T ss_dssp             CSCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHH------H----HHHHHHHTCCCCCTTTTTT
T ss_pred             cccCCcccCCHHHh--cCCCCCCccccHHHHHHHHHHHhCCCCCCCccHH------H----HHHHHHhCCCCCCcccccc
Confidence            46799999999998  5567899999999999999999999998653221      1    111111111 1111  122


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+..       +..++..||+.||++||++.++++
T Consensus       240 ~s~~-------~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          240 VTPE-------AKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             SCHH-------HHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCHH-------HHHHHHHHcCCChhHCCCHHHHhc
Confidence            3443       344455599999999999999986

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.67  E-value=1.5e-16  Score=104.78  Aligned_cols=110  Identities=14%  Similarity=0.064  Sum_probs=69.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---------   73 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   73 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||.................+.........         
T Consensus       252 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  329 (397)
T 1wak_A          252 EDIQTRQYRSLEVL--IGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYS  329 (397)
T ss_dssp             SCCSCGGGCCHHHH--HTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTG
T ss_pred             cCCCCCcccCChhh--cCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhccccc
Confidence            45789999999998  4567899999999999999999999999765433211111111111111111000         


Q ss_pred             ----------ccccCCCC-----------hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           74 ----------LKRHGLVT-----------EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        74 ----------~~~~~~~~-----------~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                                .......+           .........+..|+..||+.||++||++.++++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  391 (397)
T 1wak_A          330 KEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR  391 (397)
T ss_dssp             GGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred             ccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence                      00000000           011234456778889999999999999999985

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.66  E-value=2.2e-16  Score=103.32  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=64.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   79 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||.+....      .    ....+....   .......
T Consensus       177 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  244 (361)
T 2yab_A          177 NIFGTPEFVAPEIV--NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ------E----TLANITAVSYDFDEEFFSQ  244 (361)
T ss_dssp             CCCSCGGGCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH------H----HHHHHHTTCCCCCHHHHTT
T ss_pred             cCCCCccEECchHH--cCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHH------H----HHHHHHhcCCCCCchhccC
Confidence            46799999999998  5567899999999999999999999999754221      1    111111111   1111223


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+....       .++..||+.||.+||++.++++
T Consensus       245 ~s~~~~-------~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          245 TSELAK-------DFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             SCHHHH-------HHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CCHHHH-------HHHHHHCCCChhHCcCHHHHhc
Confidence            444444       4445599999999999999985

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.66  E-value=1.1e-16  Score=102.70  Aligned_cols=107  Identities=15%  Similarity=0.162  Sum_probs=69.5

Q ss_pred             CccccccCccccccc-cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRN-FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~-~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+... ...++.++||||+|++++++++|..||.......  ..      .............+...+. 
T Consensus       204 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~-  274 (317)
T 2buj_A          204 RCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKG--DS------VALAVQNQLSIPQSPRHSS-  274 (317)
T ss_dssp             HSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTT--SC------HHHHHHCC--CCCCTTSCH-
T ss_pred             cCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhccc--ch------hhHHhhccCCCCccccCCH-
Confidence            468899999987321 1236789999999999999999999985321110  00      1111111111111223344 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVP  126 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~  126 (133)
                            .+..++..||+.||.+||++.+|++.|+++....+.+
T Consensus       275 ------~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~  311 (317)
T 2buj_A          275 ------ALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ  311 (317)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC-
T ss_pred             ------HHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCC
Confidence                  3455556699999999999999999999987665443

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.66  E-value=4.1e-16  Score=99.97  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=66.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc--cccccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE--DLKRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   81 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||.....      .    .....+....  ....+...+
T Consensus       195 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~------~----~~~~~~~~~~~~~~~~~~~~~  262 (309)
T 2h34_A          195 TVGTLYYMAPERF--SESHATYRADIYALTCVLYECLTGSPPYQGDQL------S----VMGAHINQAIPRPSTVRPGIP  262 (309)
T ss_dssp             --CCGGGCCGGGT--CC----CCCHHHHHHHHHHHHHHSSCSSCSCHH------H----HHHHHHHSCCCCGGGTSTTCC
T ss_pred             cCCCcCccCHHHH--cCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH------H----HHHHHhccCCCCccccCCCCC
Confidence            4688999999998  556788999999999999999999999864321      1    1111111111  112233345


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCC-CHHHHHHHHccCccCCCCCCC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRS-SMSKAVEMLEGGLEALQVPPK  128 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rp-s~~~v~~~l~~~~~~~~~~~~  128 (133)
                      ....       .++..||+.||++|| ++++++..|++..........
T Consensus       263 ~~l~-------~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~~~~~  303 (309)
T 2h34_A          263 VAFD-------AVIARGMAKNPEDRYVTCGDLSAAAHAALATADQDRA  303 (309)
T ss_dssp             THHH-------HHHHHHTCSSGGGSCSSHHHHHHHHHHTCC-------
T ss_pred             HHHH-------HHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhcccch
Confidence            5444       444559999999999 999999999988877654443

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.66  E-value=5.2e-17  Score=102.98  Aligned_cols=101  Identities=15%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .||..|+|||.+.. ...++.++||||+|++++++++|..++......     ..    .......  ....+...+.. 
T Consensus       178 ~~~~~y~aPE~~~~-~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~-----~~----~~~~~~~--~~~~~~~~~~~-  244 (289)
T 4fvq_A          178 QERIPWVPPECIEN-PKNLNLATDKWSFGTTLWEICSGGDKPLSALDS-----QR----KLQFYED--RHQLPAPKAAE-  244 (289)
T ss_dssp             HHTTTTSCHHHHHC-GGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-----HH----HHHHHHT--TCCCCCCSSCT-
T ss_pred             CCcCcccCHHHhCC-CCCCCchhHHHHHHHHHHHHHcCCCCCccccch-----HH----HHHHhhc--cCCCCCCCCHH-
Confidence            47888999998832 256889999999999999999965544322111     00    1111111  11122333443 


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                            +..++..||+.||++||++.++++.|+++.+...
T Consensus       245 ------l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~  278 (289)
T 4fvq_A          245 ------LANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDL  278 (289)
T ss_dssp             ------THHHHHHHSCSSGGGSCCHHHHHHHHHTCC----
T ss_pred             ------HHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCC
Confidence                  3444555999999999999999999999987643

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.66  E-value=1e-16  Score=103.98  Aligned_cols=92  Identities=16%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             CCCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +.+||+.|+|||++  ....+ +.++||||+|++++++++|..||.......          ....+.. .....+...+
T Consensus       166 ~~~gt~~y~aPE~~--~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~----------~~~~i~~-~~~~~p~~~s  232 (336)
T 3h4j_B          166 TSCGSPNYAAPEVI--NGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN----------LFKKVNS-CVYVMPDFLS  232 (336)
T ss_dssp             CCTTSTTTSCGGGS--CCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT----------CBCCCCS-SCCCCCTTSC
T ss_pred             cccCCcCcCCHHHH--cCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH----------HHHHHHc-CCCCCcccCC
Confidence            45799999999998  44444 678999999999999999999997653322          1111111 1122344445


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       +..++..||+.||.+|||+.++++
T Consensus       233 ~~-------~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          233 PG-------AQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             HH-------HHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             HH-------HHHHHHHHcCCChhHCcCHHHHHh
Confidence            43       344555599999999999999985

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.66  E-value=3.7e-16  Score=100.71  Aligned_cols=93  Identities=19%  Similarity=0.234  Sum_probs=64.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--cccCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--KRHGLV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   80 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||......      .    ....+.....+  ......
T Consensus       200 ~~~gt~~y~aPE~~--~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~------~----~~~~~~~~~~~~~~~~~~~  267 (321)
T 2c30_A          200 SLVGTPYWMAPEVI--SRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPV------Q----AMKRLRDSPPPKLKNSHKV  267 (321)
T ss_dssp             CCCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH------H----HHHHHHHSSCCCCTTGGGS
T ss_pred             cccCCccccCHhhh--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH------H----HHHHHhcCCCCCcCccccC
Confidence            35799999999998  5667899999999999999999999998653211      1    11111111111  111223


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.       .+..++..||+.||++||++.++++
T Consensus       268 ~~-------~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          268 SP-------VLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             CH-------HHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             CH-------HHHHHHHHHccCChhhCcCHHHHhc
Confidence            33       3445555699999999999999986

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.66  E-value=4.8e-17  Score=102.67  Aligned_cols=96  Identities=18%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++|..||......      .    ....+..+.....+...+.. 
T Consensus       177 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~----~~~~i~~~~~~~~~~~~~~~-  243 (279)
T 2w5a_A          177 VGTPYYMSPEQM--NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK------E----LAGKIREGKFRRIPYRYSDE-  243 (279)
T ss_dssp             HSCCTTCCHHHH--HCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHTCCCCCCTTSCHH-
T ss_pred             CCCccccChHHh--ccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH------H----HHHHHhhcccccCCcccCHH-
Confidence            578899999998  4567889999999999999999999998754211      1    12222222222333444443 


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                            +..++..||+.||.+||++.+|++.+...
T Consensus       244 ------l~~li~~~l~~~p~~Rps~~~ll~~~~~~  272 (279)
T 2w5a_A          244 ------LNEIITRMLNLKDYHRPSVEEILENPLIL  272 (279)
T ss_dssp             ------HHHHHHHHTCSSGGGSCCHHHHHTSTTCC
T ss_pred             ------HHHHHHHHcCCCcccCCCHHHHHhChhhh
Confidence                  44455559999999999999999865443

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.66  E-value=5.5e-17  Score=102.92  Aligned_cols=100  Identities=22%  Similarity=0.293  Sum_probs=69.0

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++ |..||......         ...............+...+. 
T Consensus       185 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-  252 (291)
T 1u46_A          185 KVPFAWCAPESL--KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS---------QILHKIDKEGERLPRPEDCPQ-  252 (291)
T ss_dssp             -CCGGGCCHHHH--HHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH---------HHHHHHHTSCCCCCCCTTCCH-
T ss_pred             CCCceeeCchhh--cCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHH---------HHHHHHHccCCCCCCCcCcCH-
Confidence            467789999998  45678899999999999999999 88898654221         111112222222223333444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            .+..++..||+.||++||++.+|++.|+++...
T Consensus       253 ------~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~  285 (291)
T 1u46_A          253 ------DIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT  285 (291)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             ------HHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence                  344555569999999999999999999887654

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.65  E-value=6.8e-17  Score=104.53  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=64.2

Q ss_pred             CCCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..+||+.|+|||++  ....+ +.++||||+|++++++++|..||.+....      .    ....+..+ ....|...+
T Consensus       172 ~~~gt~~y~aPE~~--~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~----~~~~i~~~-~~~~p~~~s  238 (328)
T 3fe3_A          172 AFCGAPPYAAPELF--QGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLK------E----LRERVLRG-KYRIPFYMS  238 (328)
T ss_dssp             TTSSSGGGCCHHHH--HTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHC-CCCCCTTSC
T ss_pred             cccCCcceeCcccc--cCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHH------H----HHHHHHhC-CCCCCCCCC
Confidence            46799999999998  34454 47899999999999999999999754221      1    11111111 112344455


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....+       ++..||+.||.+|||+.++++
T Consensus       239 ~~~~~-------li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          239 TDCEN-------LLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             HHHHH-------HHHHHCCSSTTTSCCHHHHTT
T ss_pred             HHHHH-------HHHHHCCCChhHCcCHHHHhc
Confidence            54444       444599999999999999986

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.65  E-value=1.3e-16  Score=102.92  Aligned_cols=103  Identities=19%  Similarity=0.171  Sum_probs=56.2

Q ss_pred             CCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||++.. ....++.++||||+|++++++++|..||.......          .   .............+.
T Consensus       210 ~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~----------~---~~~~~~~~~~~~~~~  276 (337)
T 3ll6_A          210 RNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR----------I---VNGKYSIPPHDTQYT  276 (337)
T ss_dssp             --------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC-------------------------CCCCTTCCSSG
T ss_pred             ccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHH----------h---hcCcccCCcccccch
Confidence            458999999998721 23467889999999999999999999986532211          1   111111111222334


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVP  126 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~  126 (133)
                      ..       ..++..||+.||.+||++.++++.|+.+.......
T Consensus       277 ~~-------~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~~~  313 (337)
T 3ll6_A          277 VF-------HSLIRAMLQVNPEERLSIAEVVHQLQEIAAARNVN  313 (337)
T ss_dssp             GG-------HHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTTCC
T ss_pred             HH-------HHHHHHHccCChhhCcCHHHHHHHHHHHHhccCCC
Confidence            33       34455599999999999999999998887654433

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.65  E-value=3.3e-16  Score=101.16  Aligned_cols=96  Identities=11%  Similarity=0.155  Sum_probs=64.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||......      ........ .............+.
T Consensus       176 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~  246 (326)
T 2y0a_A          176 NIFGTPEFVAPEIV--NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ------ETLANVSA-VNYEFEDEYFSNTSA  246 (326)
T ss_dssp             CCCSCTTTCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH------HHHHHHHH-TCCCCCHHHHTTSCH
T ss_pred             cccCCcCcCCceee--cCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHH------HHHHHHHh-cCCCcCccccccCCH
Confidence            45799999999998  5567899999999999999999999998653211      11111110 011111111122333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       +..++..||+.||++||++.++++
T Consensus       247 ~-------~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          247 L-------AKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             H-------HHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             H-------HHHHHHHHccCChhhCCCHHHHhc
Confidence            3       445555699999999999999986

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.65  E-value=4.4e-16  Score=102.11  Aligned_cols=115  Identities=11%  Similarity=0.041  Sum_probs=67.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---------   73 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   73 (133)
                      ..+||..|+|||++.. ...++.++||||+|++++++++|+.||.+....      .....+...+.....         
T Consensus       188 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~~l~~i~~~~g~p~~~~~~~~~~~  260 (367)
T 2fst_X          188 GYVATRWYRAPEIMLN-WMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI------DQLKLILRLVGTPGAELLKKISSE  260 (367)
T ss_dssp             ---CCCTTCCHHHHTT-CCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHHHHHCSCCHHHHTTCCCH
T ss_pred             CcCcCcCccChHHHcC-CcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHHhCCCCHHHHHHhhhH
Confidence            4579999999998732 257889999999999999999999998754321      111111111100000         


Q ss_pred             ---------ccccCC-CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCCC
Q 040499           74 ---------LKRHGL-VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEALQ  124 (133)
Q Consensus        74 ---------~~~~~~-~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~~  124 (133)
                               ...+.. ...........+..|+..||+.||++||++.++++  .+++......
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~~~~  323 (367)
T 2fst_X          261 SARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDD  323 (367)
T ss_dssp             HHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCGGG
T ss_pred             HHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccCCCC
Confidence                     000000 00000001123556666799999999999999986  5666554433

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.65  E-value=1.8e-16  Score=103.22  Aligned_cols=96  Identities=23%  Similarity=0.296  Sum_probs=65.3

Q ss_pred             CCCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..+||..|+|||++.. ....++.++||||+|++++++++|..||......         ...............+...+
T Consensus       209 ~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  279 (348)
T 1u5q_A          209 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM---------SALYHIAQNESPALQSGHWS  279 (348)
T ss_dssp             CCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---------HHHHHHHHSCCCCCCCTTSC
T ss_pred             cccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH---------HHHHHHHhcCCCCCCCCCCC
Confidence            3579999999998732 2457889999999999999999999998653211         11122222222222233344


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       +..++..||+.||++||++.++++
T Consensus       280 ~~-------l~~li~~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          280 EY-------FRNFVDSCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HH-------HHHHHHHHcccChhhCcCHHHHhh
Confidence            43       344555599999999999999975

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.65  E-value=3.8e-16  Score=99.53  Aligned_cols=103  Identities=16%  Similarity=0.197  Sum_probs=69.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---ccccCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---LKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   80 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||......         ............   .......
T Consensus       172 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  240 (294)
T 4eqm_A          172 VLGTVQYFSPEQA--KGEATDECTDIYSIGIVLYEMLVGEPPFNGETAV---------SIAIKHIQDSVPNVTTDVRKDI  240 (294)
T ss_dssp             ---CCSSCCHHHH--HTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHH---------HHHHHHHSSCCCCHHHHSCTTS
T ss_pred             cccCccccCHhHh--cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH---------HHHHHHhhccCCCcchhcccCC
Confidence            4689999999998  5567888999999999999999999999754221         011111222111   1112333


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCC-CHHHHHHHHccCccCCC
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRS-SMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rp-s~~~v~~~l~~~~~~~~  124 (133)
                      +.       .+..++..||+.||.+|| ++.++...|+.......
T Consensus       241 ~~-------~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~  278 (294)
T 4eqm_A          241 PQ-------SLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENR  278 (294)
T ss_dssp             CH-------HHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSS
T ss_pred             CH-------HHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhcc
Confidence            44       344455559999999998 89999999998876543

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.65  E-value=2.8e-16  Score=103.98  Aligned_cols=101  Identities=14%  Similarity=0.300  Sum_probs=66.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||........ ............+.. .....|...+.
T Consensus       212 ~~~gt~~Y~aPE~l--~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~-~~~~~~~~~~~~i~~-~~~~~p~~~s~  287 (396)
T 4dc2_A          212 TFCGTPNYIAPEIL--RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN-PDQNTEDYLFQVILE-KQIRIPRSLSV  287 (396)
T ss_dssp             CCCBCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC-------CCHHHHHHHHHH-CCCCCCTTSCH
T ss_pred             cccCCcccCCchhh--cCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccc-cchhhHHHHHHHHhc-cccCCCCcCCH
Confidence            46899999999998  567889999999999999999999999975432211 001111112111111 12233455566


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCH------HHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSM------SKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~------~~v~~  114 (133)
                      ...+++.+       ||+.||.+|+++      .+|++
T Consensus       288 ~~~~li~~-------lL~~dP~~R~~~~~~~~~~ei~~  318 (396)
T 4dc2_A          288 KAASVLKS-------FLNKDPKERLGCHPQTGFADIQG  318 (396)
T ss_dssp             HHHHHHHH-------HTCSCTTTSTTCSTTTHHHHHHH
T ss_pred             HHHHHHHH-------HhcCCHhHcCCCCCCCCHHHHhc
Confidence            55555444       889999999985      66764

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.65  E-value=3.4e-16  Score=102.42  Aligned_cols=116  Identities=16%  Similarity=0.107  Sum_probs=69.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---------   73 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   73 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||.................+...+.....         
T Consensus       194 ~~~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  271 (373)
T 1q8y_A          194 NSIQTREYRSPEVL--LGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYT  271 (373)
T ss_dssp             SCCSCGGGCCHHHH--HTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTH
T ss_pred             CCCCCccccCcHHH--hCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchh
Confidence            45789999999998  5567899999999999999999999999765432211111111111111110000         


Q ss_pred             ---------cc-cc--CCC---------ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCc
Q 040499           74 ---------LK-RH--GLV---------TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGL  120 (133)
Q Consensus        74 ---------~~-~~--~~~---------~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~  120 (133)
                               .. ..  ...         ..........+..++..||+.||++||++.++++  .+.+..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  341 (373)
T 1q8y_A          272 RTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  341 (373)
T ss_dssp             HHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             hhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhccc
Confidence                     00 00  000         0011234456778888999999999999999987  555543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.65  E-value=4.5e-16  Score=101.46  Aligned_cols=93  Identities=17%  Similarity=0.244  Sum_probs=63.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc--cccccCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE--DLKRHGLV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   80 (133)
                      ..+||+.|+|||++  ....++.++||||+|++++++++|..||.....       ..   .........  ........
T Consensus       192 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-------~~---~~~i~~~~~~~~~~~~~~~  259 (351)
T 3c0i_A          192 GRVGTPHFMAPEVV--KREPYGKPVDVWGCGVILFILLSGCLPFYGTKE-------RL---FEGIIKGKYKMNPRQWSHI  259 (351)
T ss_dssp             CCCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH-------HH---HHHHHHTCCCCCHHHHTTS
T ss_pred             CCcCCcCccCHHHH--cCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH-------HH---HHHHHcCCCCCCccccccC
Confidence            35799999999998  556789999999999999999999999875311       11   111111111  11111223


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.       .+..++..||+.||++||++.++++
T Consensus       260 s~-------~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          260 SE-------SAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             CH-------HHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CH-------HHHHHHHHHCCCChhHCcCHHHHhc
Confidence            44       3445555699999999999999985

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.65  E-value=2.2e-16  Score=102.52  Aligned_cols=92  Identities=20%  Similarity=0.316  Sum_probs=65.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||......      ..   .......  ....+...+.
T Consensus       164 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~------~~---~~~i~~~--~~~~p~~~s~  230 (337)
T 1o6l_A          164 TFCGTPEYLAPEVL--EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE------RL---FELILME--EIRFPRTLSP  230 (337)
T ss_dssp             CCEECGGGCCGGGG--SSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH------HH---HHHHHHC--CCCCCTTSCH
T ss_pred             ccccChhhCChhhh--cCCCCCchhhcccchhHHHHHhcCCCCCCCCCHH------HH---HHHHHcC--CCCCCCCCCH
Confidence            46799999999998  5667899999999999999999999998653211      11   1111111  1223444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...+++.       .||+.||.+||     ++.+|++
T Consensus       231 ~~~~li~-------~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          231 EAKSLLA-------GLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             HHHHHHH-------HHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             HHHHHHH-------HHhhcCHHHhcCCCCCCHHHHHc
Confidence            5444444       48999999999     8999875

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.64  E-value=4.4e-16  Score=100.14  Aligned_cols=118  Identities=9%  Similarity=-0.023  Sum_probs=72.5

Q ss_pred             CCCccccccCcccccc------ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc----
Q 040499            3 DARGTVSYIAPEVFCR------NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE----   72 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~------~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----   72 (133)
                      +..||..|+|||++..      ....++.++||||+|++++++++|..||.......  .................    
T Consensus       174 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~--~~~~~~~~~~~~~p~~~~~~~  251 (319)
T 4euu_A          174 SLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR--RNKEVMYKIITGKPSGAISGV  251 (319)
T ss_dssp             CCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGG--GCHHHHHHHHHHCCTTCCEEE
T ss_pred             ecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccc--hhHHHHHHHhcCCCcccchhh
Confidence            3568999999998731      14678899999999999999999999987543321  11111111111000000    


Q ss_pred             -------ccccc--CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           73 -------DLKRH--GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        73 -------~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                             .....  .............+..++..||+.||++||++.++++...+..-.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~~  310 (319)
T 4euu_A          252 QKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (319)
T ss_dssp             ECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC-
T ss_pred             hcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhhc
Confidence                   00000  000111234444566777889999999999999999987765433

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.64  E-value=8.2e-16  Score=99.72  Aligned_cols=103  Identities=14%  Similarity=0.079  Sum_probs=67.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc--cCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR--HGLV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   80 (133)
                      ...||..|+|||++......++.++||||+|++++++++|..||......      .   ..............  ....
T Consensus       233 ~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~------~---~~~~~~~~~~~~~~~~~~~~  303 (345)
T 3hko_A          233 TKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDA------D---TISQVLNKKLCFENPNYNVL  303 (345)
T ss_dssp             --CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H---HHHHHHHCCCCTTSGGGGGS
T ss_pred             ccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChH------H---HHHHHHhcccccCCcccccC
Confidence            35689999999998433367889999999999999999999998654321      1   11111111111111  1123


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCcc
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLE  121 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~  121 (133)
                      +.       .+..++..||+.||.+||++.++++  .+++...
T Consensus       304 ~~-------~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          304 SP-------LARDLLSNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             CH-------HHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             CH-------HHHHHHHHHcCCChhHCCCHHHHhcChhhccChH
Confidence            33       3445555699999999999999987  5655543

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.64  E-value=6e-17  Score=113.03  Aligned_cols=98  Identities=22%  Similarity=0.287  Sum_probs=69.4

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||++  ....++.++||||+|++++++++ |..||......      .    ....+..+.....+...+. 
T Consensus       553 ~~t~~y~aPE~~--~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~-  619 (656)
T 2j0j_A          553 KLPIKWMAPESI--NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN------D----VIGRIENGERLPMPPNCPP-  619 (656)
T ss_dssp             -CCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH------H----HHHHHHHTCCCCCCTTCCH-
T ss_pred             CCCcceeCHHHh--cCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH------H----HHHHHHcCCCCCCCccccH-
Confidence            467789999998  45678999999999999999997 88888654221      1    1122222222233444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||+.||++||++.+|++.|+++..
T Consensus       620 ------~l~~li~~~l~~dP~~RPs~~el~~~L~~il~  651 (656)
T 2j0j_A          620 ------TLYSLMTKCWAYDPSRRPRFTELKAQLSTILE  651 (656)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence                  34455566999999999999999999987754

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.64  E-value=8.1e-17  Score=103.89  Aligned_cols=111  Identities=23%  Similarity=0.289  Sum_probs=70.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCC-----CCcchhhhHHHHhhhcCCccccccC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHT-----SSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..|+.......     .......................+.
T Consensus       190 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (327)
T 3lxl_A          190 GQSPIFWYAPESL--SDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPP  267 (327)
T ss_dssp             CCSCGGGSCHHHH--HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCCT
T ss_pred             CCccccccCHHHh--ccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCCC
Confidence            3578889999998  55678999999999999999999988875421100     0000001111222222333333344


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      ..+..       +..++..||+.||.+||++.+|++.|+.+....
T Consensus       268 ~~~~~-------l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  305 (327)
T 3lxl_A          268 ACPAE-------VHELMKLCWAPSPQDRPSFSALGPQLDMLWSGS  305 (327)
T ss_dssp             TCCHH-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHC----
T ss_pred             cccHH-------HHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhh
Confidence            44553       445555599999999999999999999876543

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.64  E-value=4.1e-16  Score=102.09  Aligned_cols=93  Identities=23%  Similarity=0.294  Sum_probs=63.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cc--cccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DL--KRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~   79 (133)
                      ..+||+.|+|||++  ....++.++||||+|++++++++|..||......      .    ....+..+. ..  .....
T Consensus       189 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  256 (362)
T 2bdw_A          189 GFAGTPGYLSPEVL--KKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH------R----LYAQIKAGAYDYPSPEWDT  256 (362)
T ss_dssp             CSCSCTTTCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHTCCCCCTTGGGG
T ss_pred             cCCCCccccCHHHH--ccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH------H----HHHHHHhCCCCCCcccccC
Confidence            45799999999998  5567899999999999999999999998753211      1    111111111 10  01112


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+..       +..++..||+.||++||++.++++
T Consensus       257 ~~~~-------~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          257 VTPE-------AKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             SCHH-------HHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CCHH-------HHHHHHHHcCCChhhCcCHHHHhc
Confidence            3343       445555599999999999999875

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.64  E-value=3.1e-16  Score=100.65  Aligned_cols=89  Identities=19%  Similarity=0.316  Sum_probs=60.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  . +.++.++||||+|++++++++|..++....        .    .............+...+. 
T Consensus       216 ~~gt~~y~aPE~~--~-~~~~~~~DiwslG~il~el~~g~~~~~~~~--------~----~~~~~~~~~~~~~~~~~~~-  279 (311)
T 3p1a_A          216 QEGDPRYMAPELL--Q-GSYGTAADVFSLGLTILEVACNMELPHGGE--------G----WQQLRQGYLPPEFTAGLSS-  279 (311)
T ss_dssp             CCCCGGGCCGGGG--G-TCCSTHHHHHHHHHHHHHHHHTCCCCSSHH--------H----HHHHTTTCCCHHHHTTSCH-
T ss_pred             cCCCccccCHhHh--c-CCCCchhhHHHHHHHHHHHHhCCCCCCCcc--------H----HHHHhccCCCcccccCCCH-
Confidence            4689999999987  3 368899999999999999999866553210        0    1111111111122333344 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.||++||++.++++
T Consensus       280 ------~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          280 ------ELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             ------HHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ------HHHHHHHHHcCCChhhCcCHHHHHh
Confidence                  3455555699999999999999986

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.64  E-value=5.1e-16  Score=102.35  Aligned_cols=47  Identities=28%  Similarity=0.433  Sum_probs=39.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      .+||..|+|||++......++.++||||+|++++++++|..||....
T Consensus       195 ~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  241 (389)
T 3gni_B          195 SVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMP  241 (389)
T ss_dssp             CTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             ccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCC
Confidence            36899999999984322578999999999999999999999997643

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.64  E-value=1.4e-16  Score=101.76  Aligned_cols=92  Identities=20%  Similarity=0.269  Sum_probs=64.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..|+......      .    ....+........+...+..
T Consensus       179 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~  246 (303)
T 3a7i_A          179 FVGTPFWMAPEVI--KQSAYDSKADIWSLGITAIELARGEPPHSELHPM------K----VLFLIPKNNPPTLEGNYSKP  246 (303)
T ss_dssp             CCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH------H----HHHHHHHSCCCCCCSSCCHH
T ss_pred             cCCCcCccCHHHH--hcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH------H----HHHHhhcCCCCCCccccCHH
Confidence            5689999999998  5567889999999999999999999998643211      1    11111112222233344443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             +..++..||+.||.+||++.+|++
T Consensus       247 -------l~~li~~~l~~dp~~Rps~~~ll~  270 (303)
T 3a7i_A          247 -------LKEFVEACLNKEPSFRPTAKELLK  270 (303)
T ss_dssp             -------HHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             -------HHHHHHHHcCCChhhCcCHHHHhh
Confidence                   445555699999999999999975

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.64  E-value=7.1e-16  Score=98.89  Aligned_cols=96  Identities=20%  Similarity=0.346  Sum_probs=63.3

Q ss_pred             CCccccccCccccccc---------cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc
Q 040499            4 ARGTVSYIAPEVFCRN---------FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL   74 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~---------~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (133)
                      ..||..|+|||.+...         ...++.++||||+|++++++++|..||......        ..............
T Consensus       188 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~--------~~~~~~~~~~~~~~  259 (313)
T 3cek_A          188 QVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQ--------ISKLHAIIDPNHEI  259 (313)
T ss_dssp             --CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSH--------HHHHHHHHCTTSCC
T ss_pred             CCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHH--------HHHHHHHHhccccc
Confidence            4689999999987320         136788999999999999999999998643221        11122222222222


Q ss_pred             cccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           75 KRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+...+..       +..++..||+.||.+||++.++++
T Consensus       260 ~~~~~~~~~-------l~~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          260 EFPDIPEKD-------LQDVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             CCCCCSCHH-------HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCcccchHH-------HHHHHHHHccCCcccCcCHHHHhc
Confidence            333333443       445555699999999999999986

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.64  E-value=1.7e-15  Score=99.25  Aligned_cols=108  Identities=13%  Similarity=0.030  Sum_probs=68.1

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhc------------
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLE------------   69 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------   69 (133)
                      +..+||..|+|||++.. ...++.++||||+|++++++++|+.||.+....      .....+.....            
T Consensus       183 ~~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~~l~~i~~~~g~~~~~~~~~~~~  255 (367)
T 1cm8_A          183 TGYVVTRWYRAPEVILN-WMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL------DQLKEIMKVTGTPPAEFVQRLQS  255 (367)
T ss_dssp             CSSCSCGGGCCTHHHHT-TTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHHHCCCCHHHHHTCSC
T ss_pred             CcCcCCCCcCCHHHHhC-CCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHhcCCCCHHHHHHhhh
Confidence            35679999999998732 257899999999999999999999998754321      11110110000            


Q ss_pred             -----------CCc---cccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCC
Q 040499           70 -----------PGE---DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEAL  123 (133)
Q Consensus        70 -----------~~~---~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~  123 (133)
                                 ...   ........+.       .+..++..||+.||++|||+.++++  .+++.....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~~~  318 (367)
T 1cm8_A          256 DEAKNYMKGLPELEKKDFASILTNASP-------LAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTE  318 (367)
T ss_dssp             HHHHHHHHHSCCCCCCCGGGTCTTCCH-------HHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC---
T ss_pred             HHHHHHHHhCCCCCCCCHHHHCCCCCH-------HHHHHHHHHccCChhHCCCHHHHhcChHHHhhcCCc
Confidence                       000   0001112233       3455556699999999999999997  666655443

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.64  E-value=1.1e-16  Score=102.09  Aligned_cols=108  Identities=23%  Similarity=0.292  Sum_probs=69.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCC-----CCCcchhhhHHHHhhhcCCccccccC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTH-----TSSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      ..||..|+|||.+  ....++.++|+||+|++++++++|..|+......     ........................+.
T Consensus       189 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (302)
T 4e5w_A          189 RDSPVFWYAPECL--MQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPP  266 (302)
T ss_dssp             TTCCGGGCCHHHH--HHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCT
T ss_pred             CCCCccccCCeee--cCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCC
Confidence            4578889999988  5567889999999999999999988775321100     00000111111222222233333344


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                      ..+..       +..++..||+.||.+||++.++++.|+++.
T Consensus       267 ~~~~~-------l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          267 NCPDE-------VYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             TCCHH-------HHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCHH-------HHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            44543       445555699999999999999999998764

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.63  E-value=5.7e-16  Score=100.94  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccc--ccCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLK--RHGLV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   80 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||.......     ..   ............  .....
T Consensus       209 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-----~~---~~~i~~~~~~~~~~~~~~~  278 (349)
T 2w4o_A          209 TVCGTPGYCAPEIL--RGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQ-----FM---FRRILNCEYYFISPWWDEV  278 (349)
T ss_dssp             ----CGGGSCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHH-----HH---HHHHHTTCCCCCTTTTTTS
T ss_pred             cccCCCCccCHHHh--cCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccH-----HH---HHHHHhCCCccCCchhhhC
Confidence            35689999999998  55678999999999999999999999986532210     00   111111111110  11223


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.       .+..++..||+.||++||++.++++
T Consensus       279 ~~-------~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          279 SL-------NAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             CH-------HHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CH-------HHHHHHHHHccCChhhCcCHHHHhc
Confidence            33       3445666699999999999999987

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.63  E-value=4.9e-16  Score=100.24  Aligned_cols=95  Identities=18%  Similarity=0.281  Sum_probs=63.7

Q ss_pred             CCCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..+||..|+|||++  ....+ +.++||||+|++++++++|..||.......    .....+.    ............+
T Consensus       166 ~~~gt~~y~aPE~~--~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~----~~~~~~~----~~~~~~~~~~~~~  235 (323)
T 3tki_A          166 KMCGTLPYVAPELL--KRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC----QEYSDWK----EKKTYLNPWKKID  235 (323)
T ss_dssp             SCCSCGGGSCHHHH--HCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTS----HHHHHHH----TTCTTSTTGGGSC
T ss_pred             CCccCcCccCcHHh--ccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHH----HHHHHHh----cccccCCccccCC
Confidence            45799999999998  33444 778999999999999999999997543321    1111111    1111111112233


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       .+..++..||+.||++||++.++++
T Consensus       236 ~-------~~~~li~~~L~~dP~~R~t~~eil~  261 (323)
T 3tki_A          236 S-------APLALLHKILVENPSARITIPDIKK  261 (323)
T ss_dssp             H-------HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             H-------HHHHHHHHHccCChhhCcCHHHHhh
Confidence            3       3445556699999999999999986

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.63  E-value=4e-16  Score=101.46  Aligned_cols=96  Identities=16%  Similarity=0.225  Sum_probs=64.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccc---ccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLK---RHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   79 (133)
                      +.+||..|+|||++  ....++.++||||+|++++++++|..||.......   ...    +...+..+....   ....
T Consensus       179 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~---~~~----~~~~i~~~~~~~~~~~~~~  249 (342)
T 2qr7_A          179 TPCYTANFVAPEVL--ERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDT---PEE----ILARIGSGKFSLSGGYWNS  249 (342)
T ss_dssp             CSSCCSSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSC---HHH----HHHHHHHCCCCCCSTTTTT
T ss_pred             ccCCCccccCHHHh--cCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCC---HHH----HHHHHccCCcccCcccccc
Confidence            45789999999998  44568899999999999999999999997532211   111    111111111111   1123


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+....       .++..||+.||++||++.++++
T Consensus       250 ~s~~~~-------~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          250 VSDTAK-------DLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             SCHHHH-------HHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CCHHHH-------HHHHHHCCCChhHCcCHHHHhc
Confidence            444444       4444599999999999999985

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.63  E-value=1.1e-15  Score=97.48  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             CCCccccccCccccccccC-ccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFG-GISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~-~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ...||..|+|||.+..... .++.++||||+|++++++++|..||......      ..   .................+
T Consensus       196 ~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~------~~---~~~~~~~~~~~~~~~~~~  266 (298)
T 2zv2_A          196 NTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIM------CL---HSKIKSQALEFPDQPDIA  266 (298)
T ss_dssp             CCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHH------HH---HHHHHHCCCCCCSSSCCC
T ss_pred             CCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHH------HH---HHHHhcccCCCCCccccC
Confidence            4579999999999832211 1467899999999999999999998653211      11   111111111111122334


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       +..++..||+.||++||++.++++
T Consensus       267 ~~-------l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          267 ED-------LKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             HH-------HHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             HH-------HHHHHHHHhhcChhhCCCHHHHhc
Confidence            43       445555599999999999999874

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.63  E-value=2.8e-16  Score=105.30  Aligned_cols=93  Identities=18%  Similarity=0.259  Sum_probs=66.2

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ++.+||..|+|||++  ....++.++||||+|++++++++|..||......      ..   .......  ....+...+
T Consensus       307 ~~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~------~~---~~~i~~~--~~~~p~~~~  373 (446)
T 4ejn_A          307 KTFCGTPEYLAPEVL--EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE------KL---FELILME--EIRFPRTLG  373 (446)
T ss_dssp             CCSSSCGGGCCHHHH--HTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HH---HHHHHHC--CCCCCTTSC
T ss_pred             ccccCCccccCHhhc--CCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHH------HH---HHHHHhC--CCCCCccCC
Confidence            356799999999998  5678899999999999999999999999654221      11   1111111  112344455


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ....       .++..||+.||.+||     ++.++++
T Consensus       374 ~~~~-------~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          374 PEAK-------SLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             HHHH-------HHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             HHHH-------HHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            5444       444459999999999     9999985

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.63  E-value=1.7e-15  Score=99.12  Aligned_cols=105  Identities=18%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc----------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE----------   72 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   72 (133)
                      ..+||..|+|||++. ....++.++||||+|++++++++|..||.......      ....+...+....          
T Consensus       190 ~~~gt~~y~aPE~~~-~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~  262 (364)
T 3qyz_A          190 EYVATRWYRAPEIML-NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD------QLNHILGILGSPSQEDLNCIINL  262 (364)
T ss_dssp             CCCSCGGGCCHHHHH-TBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG------HHHHHHHHHCSCCHHHHHTCCCH
T ss_pred             ccccccCCCCCHHhc-CCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH------HHHHHHHHhCCCCHHHHHHhhhh
Confidence            457999999999863 23457899999999999999999999987543221      1111111100000          


Q ss_pred             -------------c---ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCcc
Q 040499           73 -------------D---LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLE  121 (133)
Q Consensus        73 -------------~---~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~  121 (133)
                                   .   .......+.       .+..++..||+.||++||++.++++  .+++...
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~  322 (364)
T 3qyz_A          263 KARNYLLSLPHKNKVPWNRLFPNADS-------KALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYD  322 (364)
T ss_dssp             HHHHHHHTSCCCCCCCHHHHCTTSCH-------HHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTCC
T ss_pred             hHHHHHHhcCCccCCCHHHhCCCCCH-------HHHHHHHHHcCCChhhCCCHHHHhcCcchhhccC
Confidence                         0   000111222       4556666799999999999999986  5665543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.63  E-value=7.3e-16  Score=101.44  Aligned_cols=45  Identities=16%  Similarity=0.115  Sum_probs=40.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||...
T Consensus       217 ~~~~t~~y~aPE~~--~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          217 QYIQSRFYRSPEVL--LGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             SSCSCGGGCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccCCccccChHHH--cCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            46799999999998  5567899999999999999999999999754

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.63  E-value=1.2e-16  Score=104.29  Aligned_cols=45  Identities=29%  Similarity=0.255  Sum_probs=39.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||...
T Consensus       218 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~pf~~~  262 (360)
T 3llt_A          218 SIINTRQYRAPEVI--LNLGWDVSSDMWSFGCVLAELYTGSLLFRTH  262 (360)
T ss_dssp             SCCSCGGGCCHHHH--TTCCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CccCcccccCcHHH--cCCCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence            45789999999998  5667899999999999999999999999754

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.63  E-value=6.4e-16  Score=99.80  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=64.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||......      ...... ...............+.
T Consensus       192 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~------~~~~~i-~~~~~~~~~~~~~~~~~  262 (327)
T 3lm5_A          192 EIMGTPEYLAPEIL--NYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ------ETYLNI-SQVNVDYSEETFSSVSQ  262 (327)
T ss_dssp             --CCCGGGCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHH-HHTCCCCCTTTTTTSCH
T ss_pred             cccCCcCccCCeee--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch------HHHHHH-HhcccccCchhhcccCH
Confidence            35699999999998  5667889999999999999999999998653221      110001 11111111111222344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||+.||.+||++.++++
T Consensus       263 -------~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          263 -------LATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             -------HHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             -------HHHHHHHHHcCCChhhCcCHHHHhC
Confidence                   3445555699999999999999986

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.63  E-value=1.5e-15  Score=96.12  Aligned_cols=101  Identities=18%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||.+  ....++.++||||+|++++++++|..||......      ......... ............+.
T Consensus       166 ~~~~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~  236 (284)
T 3kk8_A          166 GFAGTPGYLSPEVL--KKDPYSKPVDIWACGVILYILLVGYPPFWDEDQH------RLYAQIKAG-AYDYPSPEWDTVTP  236 (284)
T ss_dssp             CSCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHT-CCCCCTTTTTTSCH
T ss_pred             CCCCCcCCcCchhh--cCCCCCcccchHHHHHHHHHHHHCCCCCCCCchh------HHHHHHHhc-cccCCchhhcccCH
Confidence            35789999999998  5567899999999999999999999998653221      111111110 00011111122344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      .       +..++..||+.||++||++.++++  .+.+.
T Consensus       237 ~-------~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~  268 (284)
T 3kk8_A          237 E-------AKSLIDSMLTVNPKKRITADQALKVPWICNR  268 (284)
T ss_dssp             H-------HHHHHHHHSCSSTTTSCCHHHHTTSHHHHSC
T ss_pred             H-------HHHHHHHHcccChhhCCCHHHHhcCccccCC
Confidence            3       445555699999999999999986  55443

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.63  E-value=1.3e-15  Score=96.74  Aligned_cols=92  Identities=22%  Similarity=0.397  Sum_probs=63.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC-ccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG-EDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   82 (133)
                      ..||..|+|||++  . +.++.++||||+|++++++++|..||......        .. ........ .....+...+.
T Consensus       190 ~~~t~~y~aPE~~--~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~  257 (290)
T 1t4h_A          190 VIGTPEFMAPEMY--E-EKYDESVDVYAFGMCMLEMATSEYPYSECQNA--------AQ-IYRRVTSGVKPASFDKVAIP  257 (290)
T ss_dssp             SCSSCCCCCGGGG--G-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH--------HH-HHHHHTTTCCCGGGGGCCCH
T ss_pred             ccCCcCcCCHHHH--h-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcH--------HH-HHHHHhccCCccccCCCCCH
Confidence            4689999999987  2 46889999999999999999999998653221        11 11122222 12222333333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             .+..++..||+.||++||++.++++
T Consensus       258 -------~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          258 -------EVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             -------HHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             -------HHHHHHHHHccCChhhCCCHHHHhh
Confidence                   3455566699999999999999986

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.63  E-value=1.6e-16  Score=102.55  Aligned_cols=108  Identities=19%  Similarity=0.192  Sum_probs=53.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||..|+|||++  ....++.++||||+|++++++++|..||...........   .......+..+....    ...
T Consensus       168 ~~~~t~~y~aPE~~--~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~---~~~~~~~i~~~~~~~----~~~  238 (325)
T 3kn6_A          168 TPCFTLHYAAPELL--NQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTS---AVEIMKKIKKGDFSF----EGE  238 (325)
T ss_dssp             ------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCC---HHHHHHHHTTTCCCC----CSH
T ss_pred             ccCCCcCccCHHHh--cCCCCCCccchHHHHHHHHHHHhCCCCCCCCcccccccc---HHHHHHHHHcCCCCC----Ccc
Confidence            35689999999998  556789999999999999999999999976543211011   111222222221111    111


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      ........+..++..||+.||.+||++.+++.  .+.+.
T Consensus       239 ~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~  277 (325)
T 3kn6_A          239 AWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDG  277 (325)
T ss_dssp             HHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTT
T ss_pred             cccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccC
Confidence            11112224455556699999999999999874  44443

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.62  E-value=1.2e-16  Score=101.01  Aligned_cols=97  Identities=20%  Similarity=0.340  Sum_probs=67.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++||||+|+++++++++..++...        .   . ....+...   ..+...+..
T Consensus       181 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~~~~~~~~~--------~---~-~~~~~~~~---~~~~~~~~~  243 (284)
T 2a19_B          181 SKGTLRYMSPEQI--SSQDYGKEVDLYALGLILAELLHVCDTAFET--------S---K-FFTDLRDG---IISDIFDKK  243 (284)
T ss_dssp             CCSCCTTSCHHHH--HCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH--------H---H-HHHHHHTT---CCCTTSCHH
T ss_pred             cCCcccccChhhh--ccCCCcchhhhHHHHHHHHHHHhcCCcchhH--------H---H-HHHHhhcc---cccccCCHH
Confidence            4689999999998  5567889999999999999999987765311        0   0 11111111   112333443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                             +..++..||+.||.+||++.++++.|..+.....
T Consensus       244 -------~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~  277 (284)
T 2a19_B          244 -------EKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE  277 (284)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred             -------HHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence                   3445556999999999999999999988776644

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.62  E-value=9.3e-16  Score=103.32  Aligned_cols=46  Identities=24%  Similarity=0.168  Sum_probs=38.4

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +..+||..|+|||++  ....++.++||||+|++++++++|+.||.+.
T Consensus       221 ~~~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~il~ell~g~~pF~g~  266 (464)
T 3ttj_A          221 TPYVVTRYYRAPEVI--LGMGYKENVDIWSVGCIMGEMVRHKILFPGR  266 (464)
T ss_dssp             ----CCCTTCCHHHH--TTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCcccccccCHHHH--cCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            346799999999998  5568899999999999999999999999754

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.62  E-value=2.9e-16  Score=102.97  Aligned_cols=102  Identities=8%  Similarity=-0.011  Sum_probs=63.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++......++.++||||+|++++++++|..||.............. . .................+..
T Consensus       251 ~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~  328 (371)
T 3q60_A          251 SSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRP-S-LRVPGTDSLAFGSCTPLPDF  328 (371)
T ss_dssp             GGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBC-C-TTSCCCCSCCCTTSSCCCHH
T ss_pred             ccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhh-h-hhhccccccchhhccCCCHH
Confidence            356799999999832225789999999999999999999999976533211000000 0 00000001111111233443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             +..++..||+.||++||++.++++
T Consensus       329 -------~~~li~~~L~~dP~~Rpt~~e~l~  352 (371)
T 3q60_A          329 -------VKTLIGRFLNFDRRRRLLPLEAME  352 (371)
T ss_dssp             -------HHHHHHHHTCSSTTTCCCHHHHTT
T ss_pred             -------HHHHHHHHcCCChhhCCCHHHHhc
Confidence                   444555599999999999999874

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.62  E-value=9.4e-16  Score=100.33  Aligned_cols=98  Identities=18%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             CCCccccccCccccccccCccccc-cchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHK-SDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~-~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..+||..|+|||++  ....+..+ +||||+|++++++++|..||.......     ......................+
T Consensus       176 ~~~gt~~y~aPE~~--~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s  248 (361)
T 3uc3_A          176 STVGTPAYIAPEVL--LRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-----DYRKTIQRILSVKYSIPDDIRIS  248 (361)
T ss_dssp             -----CTTSCHHHH--HCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-----CHHHHHHHHHTTCCCCCTTSCCC
T ss_pred             CCcCCCCcCChhhh--cCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-----HHHHHHHHHhcCCCCCCCcCCCC
Confidence            35699999999998  44555444 899999999999999999997643321     11111111121111111122234


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       +..++..||+.||.+|||+.++++
T Consensus       249 ~~-------~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          249 PE-------CCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             HH-------HHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HH-------HHHHHHHHccCChhHCcCHHHHHh
Confidence            43       344555599999999999999986

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.62  E-value=8.9e-17  Score=104.21  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=50.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC---ccccccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG---EDLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   79 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||...........      ........   ........
T Consensus       188 ~~~~t~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  259 (336)
T 3fhr_A          188 TPCYTPYYVAPEVL--GPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPG------MKRRIRLGQYGFPNPEWSE  259 (336)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------------CCCTTTSTT
T ss_pred             cCCCCcCccChhhh--CCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhh------HHHhhhccccccCchhhcc
Confidence            34689999999998  567889999999999999999999999875533221000      00000000   01111122


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCc
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGL  120 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~  120 (133)
                      .+..       +..++..||+.||++||++.++++  .+.+..
T Consensus       260 ~~~~-------~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  295 (336)
T 3fhr_A          260 VSED-------AKQLIRLLLKTDPTERLTITQFMNHPWINQSM  295 (336)
T ss_dssp             CCHH-------HHHHHHHHSCSSGGGSCCHHHHHHSHHHHTGG
T ss_pred             CCHH-------HHHHHHHHCCCChhHCcCHHHHhcCccccccc
Confidence            3443       445555699999999999999997  665543

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=97.83  Aligned_cols=103  Identities=16%  Similarity=0.073  Sum_probs=63.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccc--------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLK--------   75 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   75 (133)
                      .+||..|+|||++  ....++.++||||+|++++++++|..||......      .....+...........        
T Consensus       179 ~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~  250 (308)
T 3g33_A          179 VVVTLWYRAPEVL--LQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEA------DQLGKIFDLIGLPPEDDWPRDVSLP  250 (308)
T ss_dssp             GGCCCSSCCHHHH--HTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHH------HHHHHHHHHHCCCCTTTSCSSCSSC
T ss_pred             ccccccccCchHH--cCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHHhCCCChhhccchhhcc
Confidence            5689999999998  5567899999999999999999999998654221      11111111111000000        


Q ss_pred             ---ccCCCCh----hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           76 ---RHGLVTE----EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        76 ---~~~~~~~----~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                         .+.....    ........+..++..||+.||++|||+.++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          251 RGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             GGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             ccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence               0000000    00011224455666699999999999999986

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.62  E-value=4.3e-16  Score=100.47  Aligned_cols=108  Identities=19%  Similarity=0.252  Sum_probs=69.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCC------CCCcchhhhHHHHhhhcCCccccccC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTH------TSSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      .|+..|+|||.+  ....++.++||||+|++++++++|..|+......      ...........+...+........+.
T Consensus       209 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (326)
T 2w1i_A          209 ESPIFWYAPESL--TESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD  286 (326)
T ss_dssp             SCCGGGCCHHHH--HHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCT
T ss_pred             CCceeEECchhh--cCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCC
Confidence            467789999998  4567889999999999999999998776532100      00000011111222222222223334


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      ..+.       .+..++..||+.||++||++.+|++.|+++..
T Consensus       287 ~~~~-------~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~  322 (326)
T 2w1i_A          287 GCPD-------EIYMIMTECWNNNVNQRPSFRDLALRVDQIRD  322 (326)
T ss_dssp             TCCH-------HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             cccH-------HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence            4444       34555666999999999999999999987654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.62  E-value=2.9e-15  Score=98.29  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=39.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..+||..|+|||++.. ...++.++||||+|++++++++|..||...
T Consensus       200 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~el~~g~~pf~~~  245 (371)
T 4exu_A          200 GYVVTRWYRAPEVILS-WMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  245 (371)
T ss_dssp             CTTCCCTTSCHHHHSC-CSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CcccCccccCHHHhcC-CCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            4678999999998732 257889999999999999999999999754

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.62  E-value=1.5e-15  Score=99.77  Aligned_cols=93  Identities=19%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc--cccccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE--DLKRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   81 (133)
                      .+||+.|+|||++  ....++.++||||+|++++++++|..||......      ..   .........  ........+
T Consensus       248 ~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~------~~---~~~i~~~~~~~~~~~~~~~~  316 (373)
T 2x4f_A          248 NFGTPEFLAPEVV--NYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA------ET---LNNILACRWDLEDEEFQDIS  316 (373)
T ss_dssp             CCSSCTTCCHHHH--TTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH------HH---HHHHHHTCCCSCSGGGTTSC
T ss_pred             ccCCCcEeChhhc--cCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH------HH---HHHHHhccCCCChhhhccCC
Confidence            4699999999998  5667889999999999999999999998754221      11   111111111  111112233


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       .+..++..||+.||.+||++.++++
T Consensus       317 ~-------~~~~li~~~L~~dp~~Rps~~e~l~  342 (373)
T 2x4f_A          317 E-------EAKEFISKLLIKEKSWRISASEALK  342 (373)
T ss_dssp             H-------HHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             H-------HHHHHHHHHcCCChhhCCCHHHHhc
Confidence            4       3455566699999999999999986

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.62  E-value=8.3e-16  Score=97.66  Aligned_cols=97  Identities=16%  Similarity=0.261  Sum_probs=63.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ...||..|+|||++......++.++||||+|++++++++|..||......      ..........  ...+..+...+.
T Consensus       182 ~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~  253 (295)
T 2clq_A          182 TFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEP------QAAMFKVGMF--KVHPEIPESMSA  253 (295)
T ss_dssp             CCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSH------HHHHHHHHHH--CCCCCCCTTSCH
T ss_pred             ccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCch------hHHHHhhccc--cccccccccCCH
Confidence            34689999999998432234788999999999999999999998643211      0000011111  112223344444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       +..++..||+.||++||++.+++.
T Consensus       254 ~-------~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          254 E-------AKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             H-------HHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             H-------HHHHHHHHccCChhhCCCHHHHhc
Confidence            3       444555699999999999999985

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.62  E-value=1.3e-15  Score=101.68  Aligned_cols=45  Identities=20%  Similarity=0.137  Sum_probs=39.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +.+||..|+|||++  ....++.++||||+|++++++++|..||...
T Consensus       258 ~~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          258 TYIQSRFYRAPEVI--LGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             SSCSCGGGCCHHHH--HTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccCCCCCccChHHH--hCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            46799999999998  5567899999999999999999999998754

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.62  E-value=2e-15  Score=101.94  Aligned_cols=97  Identities=18%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             CCCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +.+||+.|+|||++  ....+ +.++||||+|++++++++|..||.......          ....+..+. ...+...+
T Consensus       174 ~~~gt~~y~aPE~~--~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~----------~~~~i~~~~-~~~p~~~s  240 (476)
T 2y94_A          174 TSCGSPNYAAPEVI--SGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPT----------LFKKICDGI-FYTPQYLN  240 (476)
T ss_dssp             CCCSCSTTCCHHHH--TTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHH----------HHHHHHTTC-CCCCTTCC
T ss_pred             ccCCCcCeEChhhc--cCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHH----------HHHHHhcCC-cCCCccCC
Confidence            46799999999998  33444 679999999999999999999987543211          122222221 12233344


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      ...       ..++..||+.||++||++.+|++  .+.+.
T Consensus       241 ~~~-------~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~  273 (476)
T 2y94_A          241 PSV-------ISLLKHMLQVDPMKRATIKDIREHEWFKQD  273 (476)
T ss_dssp             HHH-------HHHHHHHTCSSTTTSCCHHHHHTCHHHHTT
T ss_pred             HHH-------HHHHHHHcCCCchhCcCHHHHHhCHHhhhc
Confidence            443       44555599999999999999986  55543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.62  E-value=8.1e-16  Score=100.12  Aligned_cols=101  Identities=14%  Similarity=0.252  Sum_probs=64.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||........ ............+... ....+...+.
T Consensus       169 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-~~~~~~~~~~~~i~~~-~~~~p~~~s~  244 (345)
T 3a8x_A          169 TFCGTPNYIAPEIL--RGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN-PDQNTEDYLFQVILEK-QIRIPRSLSV  244 (345)
T ss_dssp             CCCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC--------CHHHHHHHHHHC-CCCCCTTSCH
T ss_pred             ccCCCccccCcccc--CCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccc-cccccHHHHHHHHHcC-CCCCCCCCCH
Confidence            46799999999998  556789999999999999999999999975432210 0001111111111111 1223444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCH------HHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSM------SKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~------~~v~~  114 (133)
                      ...++       +..||+.||.+||++      .++++
T Consensus       245 ~~~~l-------i~~lL~~dP~~R~~~~~~~~~~~i~~  275 (345)
T 3a8x_A          245 KAASV-------LKSFLNKDPKERLGCHPQTGFADIQG  275 (345)
T ss_dssp             HHHHH-------HHHHTCSSTTTSTTCCTTTHHHHHHT
T ss_pred             HHHHH-------HHHHhcCCHhHCCCCCCcCCHHHHhc
Confidence            44444       444899999999995      67764

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.62  E-value=1.6e-15  Score=97.63  Aligned_cols=93  Identities=14%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   79 (133)
                      ...||..|+|||.+  ....++.++|+||+|++++++++|..||......      .    ....+....   .......
T Consensus       177 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  244 (321)
T 2a2a_A          177 NIFGTPEFVAPEIV--NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ------E----TLANITSVSYDFDEEFFSH  244 (321)
T ss_dssp             CCCSCGGGCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHH------H----HHHHHHTTCCCCCHHHHTT
T ss_pred             ccCCCCCccCcccc--cCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHH------H----HHHHHHhcccccChhhhcc
Confidence            35689999999998  5567889999999999999999999998653211      1    111111111   1111122


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.       .+..++..||+.||++||++.++++
T Consensus       245 ~~~-------~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          245 TSE-------LAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             CCH-------HHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             cCH-------HHHHHHHHHcCCChhhCcCHHHHhc
Confidence            333       3455666699999999999999986

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.62  E-value=5.6e-16  Score=102.45  Aligned_cols=115  Identities=10%  Similarity=0.050  Sum_probs=73.1

Q ss_pred             CCCccccccCccccccc------cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--
Q 040499            3 DARGTVSYIAPEVFCRN------FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--   74 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~------~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   74 (133)
                      +.+||..|+|||++...      ...++.++||||+|++++++++|..||.......  .....   ...........  
T Consensus       174 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~--~~~~~---~~~~~~~~p~~~~  248 (396)
T 4eut_A          174 SLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR--RNKEV---MYKIITGKPSGAI  248 (396)
T ss_dssp             CSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTT--TCHHH---HHHHHHSCCTTCC
T ss_pred             cccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCccc--chHHH---HHHHhcCCCcccc
Confidence            45799999999987321      1467889999999999999999999987543322  11111   11111111000  


Q ss_pred             ------------ccc--CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           75 ------------KRH--GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        75 ------------~~~--~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                                  ...  .............+..++..||+.||++||++.++++.++++...
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          249 SGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             EEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             hhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence                        000  000111234445566777889999999999999999988877654

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.61  E-value=2e-15  Score=96.40  Aligned_cols=99  Identities=12%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++......++.++||||+|++++++++|..||......      .    ....+... ....+...+..
T Consensus       171 ~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~----~~~~i~~~-~~~~~~~~~~~  239 (305)
T 2wtk_C          171 SQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIY------K----LFENIGKG-SYAIPGDCGPP  239 (305)
T ss_dssp             CCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHH------H----HHHHHHHC-CCCCCSSSCHH
T ss_pred             CCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHH------H----HHHHHhcC-CCCCCCccCHH
Confidence            4689999999988332234467999999999999999999998753211      1    11111111 11223344443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGL  120 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~  120 (133)
                      .       ..++..||+.||++||++.++++  .+.+..
T Consensus       240 l-------~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  271 (305)
T 2wtk_C          240 L-------SDLLKGMLEYEPAKRFSIRQIRQHSWFRKKH  271 (305)
T ss_dssp             H-------HHHHHHHTCSSTTTSCCHHHHHHSHHHHSCC
T ss_pred             H-------HHHHHHHccCChhhCCCHHHHhcCcccccCC
Confidence            3       44555599999999999999996  555543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.61  E-value=1.2e-15  Score=101.61  Aligned_cols=96  Identities=20%  Similarity=0.270  Sum_probs=60.9

Q ss_pred             CCCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc---cccC
Q 040499            3 DARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL---KRHG   78 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   78 (133)
                      +.+||..|+|||++.. ....++.++||||+|++++++++|..||........         ....+..+...   ....
T Consensus       300 ~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~---------~~~~i~~~~~~~~~~~~~  370 (419)
T 3i6u_A          300 TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS---------LKDQITSGKYNFIPEVWA  370 (419)
T ss_dssp             -----CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC---------HHHHHHTTCCCCCHHHHT
T ss_pred             ccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH---------HHHHHhcCCCCCCchhhc
Confidence            4579999999998732 235678899999999999999999999975433210         11111111111   1112


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+.       .+..++..||+.||.+||++.++++
T Consensus       371 ~~~~-------~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          371 EVSE-------KALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             TSCH-------HHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ccCH-------HHHHHHHHHccCChhHCcCHHHHhC
Confidence            2333       4555566699999999999999986

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.61  E-value=3.5e-15  Score=100.96  Aligned_cols=97  Identities=23%  Similarity=0.291  Sum_probs=65.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cc--cccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DL--KRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~   79 (133)
                      ..+||+.|+|||++  . +.++.++||||+|++++++++|..||......      .    ....+..+. ..  .....
T Consensus       182 ~~~gt~~y~aPE~~--~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  248 (486)
T 3mwu_A          182 DRIGTAYYIAPEVL--R-GTYDEKCDVWSAGVILYILLSGTPPFYGKNEY------D----ILKRVETGKYAFDLPQWRT  248 (486)
T ss_dssp             CCTTGGGGCCGGGG--G-SCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHTCCCSCSGGGGG
T ss_pred             CCcCCCCCCCHHHh--C-CCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH------H----HHHHHHhCCCCCCCcccCC
Confidence            45799999999998  3 46899999999999999999999999754221      1    111111111 11  11122


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      .+..       +..++..||+.||.+|||+.++++  .+.+.
T Consensus       249 ~s~~-------~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~  283 (486)
T 3mwu_A          249 ISDD-------AKDLIRKMLTFHPSLRITATQCLEHPWIQKY  283 (486)
T ss_dssp             SCHH-------HHHHHHHHTCSSTTTSCCHHHHHHCHHHHHT
T ss_pred             CCHH-------HHHHHHHHcCCChhhCcCHHHHhcCHhhccC
Confidence            3443       344555599999999999999986  45443

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.61  E-value=8.2e-16  Score=100.88  Aligned_cols=109  Identities=15%  Similarity=0.035  Sum_probs=65.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHh----------------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYK----------------   66 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~----------------   66 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||.+.....      ....+..                
T Consensus       185 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~  256 (371)
T 2xrw_A          185 PYVVTRYYRAPEVI--LGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID------QWNKVIEQLGTPCPEFMKKLQPT  256 (371)
T ss_dssp             -----CTTCCHHHH--TTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHC-CCCCCHHHHTTSCHH
T ss_pred             CceecCCccCHHHh--cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHHhCCCCHHHHHHhhhH
Confidence            35789999999998  45678999999999999999999999987542210      0000000                


Q ss_pred             ---hhcCCccc-----------cccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           67 ---LLEPGEDL-----------KRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        67 ---~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                         ........           ................+..++..||+.||++|||+.++++  .++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  325 (371)
T 2xrw_A          257 VRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  325 (371)
T ss_dssp             HHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             HHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhh
Confidence               00000000           0000011112223446778888899999999999999986  55543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.61  E-value=1.9e-15  Score=96.99  Aligned_cols=109  Identities=14%  Similarity=0.083  Sum_probs=66.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH------   77 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   77 (133)
                      .+||..|+|||++.+ ...++.++||||+|++++++++|..||.......      ....+...+........+      
T Consensus       179 ~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~  251 (311)
T 3niz_A          179 EVVTLWYRAPDVLMG-SKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD------QLPKIFSILGTPNPREWPQVQELP  251 (311)
T ss_dssp             CCCCCTTCCHHHHTT-CCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT------HHHHHHHHHCCCCTTTSGGGTTSH
T ss_pred             CcccCCcCCHHHhcC-CCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH------HHHHHHHHHCCCChHHhhhhhccc
Confidence            468999999998732 2467899999999999999999999997654322      111111111110000000      


Q ss_pred             ----------CCC--ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           78 ----------GLV--TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        78 ----------~~~--~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                                ...  ..........+..++..||+.||++|||+.++++  .++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~  307 (311)
T 3niz_A          252 LWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDL  307 (311)
T ss_dssp             HHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTS
T ss_pred             hhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccC
Confidence                      000  0000001124556667799999999999999986  44443

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.61  E-value=2.8e-15  Score=94.42  Aligned_cols=95  Identities=18%  Similarity=0.270  Sum_probs=62.9

Q ss_pred             CCCccccccCccccccccCc-cccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGG-ISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~-~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ...||..|+|||.+  .... ++.++|+||+|++++++++|..||.......    .....+.    ............+
T Consensus       166 ~~~~~~~y~aPE~~--~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~  235 (276)
T 2yex_A          166 KMCGTLPYVAPELL--KRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC----QEYSDWK----EKKTYLNPWKKID  235 (276)
T ss_dssp             CCCSCGGGCCGGGG--TCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTS----HHHHHHH----TTCTTSTTGGGSC
T ss_pred             CCccccCccChHHH--hcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHH----HHHHHhh----hcccccCchhhcC
Confidence            35689999999998  3334 3778999999999999999999997643321    1111111    1111111112233


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       .+..++..||+.||++||++.++++
T Consensus       236 ~-------~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          236 S-------APLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             H-------HHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             H-------HHHHHHHHHCCCCchhCCCHHHHhc
Confidence            3       3445566699999999999999986

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.61  E-value=7.3e-16  Score=99.92  Aligned_cols=85  Identities=25%  Similarity=0.317  Sum_probs=61.4

Q ss_pred             CCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      .+||..|+|||++  ....+ +.++||||+|++++++++|..||......               ...  ....+...+.
T Consensus       189 ~~gt~~y~aPE~~--~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~---------------~~~--~~~~~~~~~~  249 (335)
T 3dls_A          189 FCGTIEYCAPEVL--MGNPYRGPELEMWSLGVTLYTLVFEENPFCELEET---------------VEA--AIHPPYLVSK  249 (335)
T ss_dssp             ECSCGGGCCHHHH--TTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG---------------TTT--CCCCSSCCCH
T ss_pred             cCCCccccChhhh--cCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH---------------Hhh--ccCCCcccCH
Confidence            4689999999998  44454 78899999999999999999998642110               010  1112333445


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       +..++..||+.||++||++.++++
T Consensus       250 ~-------l~~li~~~L~~dP~~Rps~~ell~  274 (335)
T 3dls_A          250 E-------LMSLVSGLLQPVPERRTTLEKLVT  274 (335)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             H-------HHHHHHHHccCChhhCcCHHHHhc
Confidence            4       444555599999999999999987

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.61  E-value=1.2e-15  Score=100.67  Aligned_cols=95  Identities=16%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++  ....++.++||||+|++++++++|..||......      .....+.. .............+. 
T Consensus       210 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~------~~~~~i~~-~~~~~~~~~~~~~s~-  279 (387)
T 1kob_A          210 TTATAEFAAPEIV--DREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL------ETLQNVKR-CDWEFDEDAFSSVSP-  279 (387)
T ss_dssp             ECSSGGGCCHHHH--TTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH------HHHHHHHH-CCCCCCSSTTTTSCH-
T ss_pred             eccCCCccCchhc--cCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHH------HHHHHHHh-CCCCCCccccccCCH-
Confidence            3689999999998  5567899999999999999999999998754221      11111111 000001111122344 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.||.+||++.++++
T Consensus       280 ------~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          280 ------EAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             ------HHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             ------HHHHHHHHHcCCChhHCcCHHHHhh
Confidence                  3445566699999999999999986

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.60  E-value=7.4e-16  Score=100.45  Aligned_cols=114  Identities=11%  Similarity=0.015  Sum_probs=69.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC-----------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG-----------   71 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   71 (133)
                      ...||..|+|||++.. ...++.++||||+|++++++++|..||......      .....+.......           
T Consensus       190 ~~~gt~~y~aPE~~~~-~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  262 (360)
T 3e3p_A          190 AYICSRYYRAPELIFG-NQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA------GQLHEIVRVLGCPSREVLRKLNPS  262 (360)
T ss_dssp             STTSCGGGCCHHHHTT-CSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHHHCCCCHHHHHHHCTT
T ss_pred             cccCCcceeCHHHHcC-CCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH------HHHHHHHHHcCCCCHHHHHhcccc
Confidence            3568999999998732 234789999999999999999999998764321      1111111110000           


Q ss_pred             -ccccccCC--------CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCC
Q 040499           72 -EDLKRHGL--------VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEAL  123 (133)
Q Consensus        72 -~~~~~~~~--------~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~  123 (133)
                       ........        ...........+..++..||+.||.+||++.++++  .+++.....
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~  325 (360)
T 3e3p_A          263 HTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDPA  325 (360)
T ss_dssp             CCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCTT
T ss_pred             hhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCcc
Confidence             00000000        00000012235667777899999999999999986  566655443

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.60  E-value=9.5e-16  Score=98.86  Aligned_cols=99  Identities=15%  Similarity=0.186  Sum_probs=66.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--cccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--KRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   81 (133)
                      ..||+.|+|||++  ....++.++||||+|++++++++|..||......      ..   ...........  ......+
T Consensus       163 ~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~------~~---~~~i~~~~~~~~~~~~~~~s  231 (321)
T 1tki_A          163 LFTAPEYYAPEVH--QHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ------QI---IENIMNAEYTFDEEAFKEIS  231 (321)
T ss_dssp             EESCGGGSCHHHH--TTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH------HH---HHHHHHTCCCCCHHHHTTSC
T ss_pred             ccCChhhcCcHHh--cCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHH------HH---HHHHHcCCCCCChhhhccCC
Confidence            4589999999998  5567889999999999999999999999753221      11   11111111110  0112233


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGL  120 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~  120 (133)
                      .       .+..++..||+.||.+||++.++++  .+.+..
T Consensus       232 ~-------~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  265 (321)
T 1tki_A          232 I-------EAMDFVDRLLVKERKSRMTASEALQHPWLKQKI  265 (321)
T ss_dssp             H-------HHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSCG
T ss_pred             H-------HHHHHHHHHcCCChhHCcCHHHHhcChhhccCc
Confidence            3       4455666699999999999999987  555443

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.60  E-value=2.6e-15  Score=95.19  Aligned_cols=93  Identities=18%  Similarity=0.205  Sum_probs=61.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++   ...++.++||||+|++++++++|..||......      ......  ..............++ 
T Consensus       186 ~~~t~~y~aPE~~---~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~-  253 (285)
T 3is5_A          186 AAGTALYMAPEVF---KRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLE------EVQQKA--TYKEPNYAVECRPLTP-  253 (285)
T ss_dssp             -CTTGGGCCHHHH---TTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHH--HHCCCCCCC--CCCCH-
T ss_pred             cccccCcCChHHh---ccCCCcccCeehHHHHHHHHHhCCCCCCCCCHH------HHHhhh--ccCCcccccccCcCCH-
Confidence            4689999999987   346789999999999999999999998753211      111111  1111111111111233 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.||++||++.+|++
T Consensus       254 ------~~~~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          254 ------QAVDLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             ------HHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHhc
Confidence                  3445556699999999999999985

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.60  E-value=6e-16  Score=100.90  Aligned_cols=92  Identities=14%  Similarity=0.187  Sum_probs=65.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||......      .    ....+..+ ....+...+.
T Consensus       197 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~------~----~~~~i~~~-~~~~p~~~~~  263 (350)
T 1rdq_E          197 TLCGTPEALAPEII--LSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI------Q----IYEKIVSG-KVRFPSHFSS  263 (350)
T ss_dssp             CCEECGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHC-CCCCCTTCCH
T ss_pred             cccCCccccCHHHh--cCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHH------H----HHHHHHcC-CCCCCCCCCH
Confidence            45799999999998  5567899999999999999999999998753221      1    11111111 1223444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                      ...++       +..||+.||.+||+     +.+|++
T Consensus       264 ~~~~l-------i~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          264 DLKDL-------LRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHHHH-------HHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHH-------HHHHhhcCHHhccCCccCCHHHHHh
Confidence            44444       44499999999998     888875

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.60  E-value=3.9e-15  Score=100.02  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHcc
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGV   42 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~   42 (133)
                      +.+||.+|+|||++. ....++.++||||+||+++|++++
T Consensus       242 ~~~gt~~Y~aPE~~~-~~~~~~~~~DiwSlG~il~elltg  280 (458)
T 3rp9_A          242 GHVVTRWYRAPELIL-LQENYTEAIDVWSIGCIFAELLNM  280 (458)
T ss_dssp             ---CCCTTCCHHHHT-TCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred             CCcccccccChHHhh-CCCCCCcHhHHHHHHHHHHHHHHh
Confidence            457899999999762 345689999999999999999984

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.60  E-value=1.6e-15  Score=97.30  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=63.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--cccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--KRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~   81 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||......         ............+  ......+
T Consensus       179 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  247 (311)
T 3ork_A          179 VIGTAQYLSPEQA--RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV---------SVAYQHVREDPIPPSARHEGLS  247 (311)
T ss_dssp             ---CCTTCCHHHH--HTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---------HHHHHHHHCCCCCHHHHSTTCC
T ss_pred             cCcCcccCCHHHh--cCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH---------HHHHHHhcCCCCCcccccCCCC
Confidence            4589999999998  5567899999999999999999999998654221         0111111111111  1122234


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHH-HHHccCc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAV-EMLEGGL  120 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~-~~l~~~~  120 (133)
                      ..       +..++..||+.||.+||+..+++ ..+.+..
T Consensus       248 ~~-------l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  280 (311)
T 3ork_A          248 AD-------LDAVVLKALAKNPENRYQTAAEMRADLVRVH  280 (311)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence            43       44555559999999999766554 4555443

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.60  E-value=9.3e-16  Score=98.83  Aligned_cols=92  Identities=22%  Similarity=0.287  Sum_probs=65.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||......      .   ........  ....+...+.
T Consensus       162 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~---~~~~i~~~--~~~~p~~~~~  228 (318)
T 1fot_A          162 TLCGTPDYIAPEVV--STKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTM------K---TYEKILNA--ELRFPPFFNE  228 (318)
T ss_dssp             CCCSCTTTCCHHHH--TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH------H---HHHHHHHC--CCCCCTTSCH
T ss_pred             cccCCccccCHhHh--cCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHH------H---HHHHHHhC--CCCCCCCCCH
Confidence            46799999999998  5667899999999999999999999998653211      1   11111111  1223444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...+++.       .||+.||++|+     ++++|++
T Consensus       229 ~~~~li~-------~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          229 DVKDLLS-------RLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             HHHHHHH-------HHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHH-------HHhccCHHHcCCCcCCCHHHHhc
Confidence            5444444       48899999999     8899874

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.60  E-value=2e-15  Score=98.55  Aligned_cols=45  Identities=27%  Similarity=0.397  Sum_probs=38.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||...
T Consensus       189 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          189 SFVGTRSYMSPERL--QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             --CCCCTTCCHHHH--TTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             CCCCCCCeECHHHH--cCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            35789999999998  5567899999999999999999999998653

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.60  E-value=7.5e-16  Score=97.29  Aligned_cols=91  Identities=21%  Similarity=0.289  Sum_probs=63.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||......      .    ....+... ....+...+..
T Consensus       167 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~----~~~~~~~~-~~~~~~~~~~~  233 (279)
T 3fdn_A          167 LCGTLDYLPPEMI--EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ------E----TYKRISRV-EFTFPDFVTEG  233 (279)
T ss_dssp             -CCCCTTCCHHHH--TTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH------H----HHHHHHHT-CCCCCTTSCHH
T ss_pred             cCCCCCccCHhHh--ccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHH------H----HHHHHHhC-CCCCCCcCCHH
Confidence            5689999999998  5567788999999999999999999998643211      1    11111111 11223444444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       ..++..||+.||.+||++.+|++
T Consensus       234 ~-------~~li~~~l~~~p~~Rps~~e~l~  257 (279)
T 3fdn_A          234 A-------RDLISRLLKHNPSQRPMLREVLE  257 (279)
T ss_dssp             H-------HHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             H-------HHHHHHHhccChhhCCCHHHHhh
Confidence            4       34555599999999999999986

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.60  E-value=2.8e-15  Score=96.05  Aligned_cols=94  Identities=18%  Similarity=0.315  Sum_probs=63.5

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++||||+|++++++++|..||......      ... .... .........+...+. 
T Consensus       185 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~~~-~~~~-~~~~~~~~~~~~~~~-  253 (314)
T 3com_A          185 VIGTPFWMAPEVI--QEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM------RAI-FMIP-TNPPPTFRKPELWSD-  253 (314)
T ss_dssp             CCSCGGGCCHHHH--SSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH------HHH-HHHH-HSCCCCCSSGGGSCH-
T ss_pred             cCCCCCccChhhc--CCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH------HHH-HHHh-cCCCcccCCcccCCH-
Confidence            4689999999998  5567889999999999999999999998643211      000 0100 011111112233344 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.||.+||++.++++
T Consensus       254 ------~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          254 ------NFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             ------HHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             ------HHHHHHHHHccCChhhCcCHHHHHh
Confidence                  3445555699999999999999975

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.60  E-value=1.4e-15  Score=96.28  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=67.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++|+||+|++++++++|..||......      .    ....+... ....+...+..
T Consensus       172 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~------~----~~~~~~~~-~~~~~~~~~~~  238 (284)
T 2vgo_A          172 MCGTLDYLPPEMI--EGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT------E----THRRIVNV-DLKFPPFLSDG  238 (284)
T ss_dssp             CCSCGGGCCHHHH--TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH------H----HHHHHHTT-CCCCCTTSCHH
T ss_pred             ccCCCCcCCHHHh--ccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh------H----HHHHHhcc-ccCCCCcCCHH
Confidence            5689999999998  5567889999999999999999999998653211      1    11111111 11223334444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~  121 (133)
                      .       ..++..||+.||.+||++.++++  .+.....
T Consensus       239 ~-------~~li~~~l~~~p~~Rps~~~ll~h~~~~~~~~  271 (284)
T 2vgo_A          239 S-------KDLISKLLRYHPPQRLPLKGVMEHPWVKANSR  271 (284)
T ss_dssp             H-------HHHHHHHSCSSGGGSCCHHHHHTCHHHHHHCC
T ss_pred             H-------HHHHHHHhhcCHhhCCCHHHHhhCHHHHhhcc
Confidence            3       44555599999999999999986  5554443

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.60  E-value=6.9e-15  Score=98.29  Aligned_cols=45  Identities=20%  Similarity=0.210  Sum_probs=35.5

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTA   47 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~   47 (133)
                      ++.+||.+|+|||++. ....++.++||||+||+++++++|..|+.
T Consensus       209 ~~~~gt~~Y~APE~~~-~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          209 TSHVVTRWYRAPELIL-LQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             --CCCCCTTCCHHHHT-TCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             cCCCCCccccCHHHHh-cCCCCCcccccchHHHHHHHHHhcccccc
Confidence            4568999999999863 34568999999999999999998655443

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.60  E-value=2.7e-15  Score=96.78  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=66.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc---------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL---------   74 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   74 (133)
                      .+||..|+|||++.+ ...++.++||||+|++++++++|..||......      .....+..........         
T Consensus       160 ~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~  232 (324)
T 3mtl_A          160 EVVTLWYRPPDILLG-STDYSTQIDMWGVGCIFYEMATGRPLFPGSTVE------EQLHFIFRILGTPTEETWPGILSNE  232 (324)
T ss_dssp             ---CGGGCCHHHHTT-CCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHHHHHCCCCTTTSTTGGGCH
T ss_pred             ccCcccccChhhhcC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHHhCCCChHhchhhhcch
Confidence            468999999998732 246789999999999999999999998754321      1111111111110000         


Q ss_pred             ----------------cccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCC
Q 040499           75 ----------------KRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEAL  123 (133)
Q Consensus        75 ----------------~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~  123 (133)
                                      ......+.       .+..++..||+.||++|||+.++++  .+.+.....
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~  292 (324)
T 3mtl_A          233 EFKTYNYPKYRAEALLSHAPRLDS-------DGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERI  292 (324)
T ss_dssp             HHHHTCCCCCCCCCHHHHCTTSCH-------HHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCSTT
T ss_pred             hhcccccccccchhhhhhcCCCCH-------HHHHHHHHHcCcCcccCCCHHHHhcChhhhhccccc
Confidence                            00111222       3455666699999999999999987  666555443

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.60  E-value=3.7e-15  Score=101.04  Aligned_cols=92  Identities=24%  Similarity=0.303  Sum_probs=63.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cc--cccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DL--KRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~   79 (133)
                      ..+||+.|+|||++  . ..++.++||||+|++++++++|..||......      .    ....+..+. ..  .....
T Consensus       197 ~~~gt~~y~aPE~l--~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  263 (494)
T 3lij_A          197 ERLGTAYYIAPEVL--R-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQ------E----ILRKVEKGKYTFDSPEWKN  263 (494)
T ss_dssp             CCCSCTTTCCHHHH--T-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHTCCCCCSGGGTT
T ss_pred             ccCCCcCeeCHHHH--c-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHH------H----HHHHHHhCCCCCCchhccc
Confidence            45799999999987  3 56899999999999999999999999754221      1    111111111 11  11122


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+..       +..++..||+.||.+|||+.++++
T Consensus       264 ~s~~-------~~~li~~~L~~dp~~R~s~~e~l~  291 (494)
T 3lij_A          264 VSEG-------AKDLIKQMLQFDSQRRISAQQALE  291 (494)
T ss_dssp             SCHH-------HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCHH-------HHHHHHHHCCCChhhCccHHHHhc
Confidence            3443       344555599999999999999885

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.60  E-value=8.1e-16  Score=100.40  Aligned_cols=92  Identities=20%  Similarity=0.326  Sum_probs=64.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||......      ..   .......  ....+...+.
T Consensus       180 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~------~~---~~~i~~~--~~~~p~~~s~  246 (353)
T 2i0e_A          180 TFCGTPDYIAPEII--AYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED------EL---FQSIMEH--NVAYPKSMSK  246 (353)
T ss_dssp             CCCSCGGGCCHHHH--TTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HH---HHHHHHC--CCCCCTTSCH
T ss_pred             cccCCccccChhhh--cCCCcCCcccccchHHHHHHHHcCCCCCCCCCHH------HH---HHHHHhC--CCCCCCCCCH
Confidence            46799999999998  5567899999999999999999999998753221      11   1111111  1223444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                      ...+++.       .||+.||.+||+     +.+|++
T Consensus       247 ~~~~li~-------~lL~~dP~~R~~~~~~~~~~i~~  276 (353)
T 2i0e_A          247 EAVAICK-------GLMTKHPGKRLGCGPEGERDIKE  276 (353)
T ss_dssp             HHHHHHH-------HHTCSCTTSCTTCSTTHHHHHHT
T ss_pred             HHHHHHH-------HHhhcCHHHcCCCCCCCHHHHhc
Confidence            5444444       488999999995     577764

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.60  E-value=1.3e-15  Score=101.79  Aligned_cols=98  Identities=12%  Similarity=0.187  Sum_probs=62.2

Q ss_pred             CCccccccCcccccc-----ccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc
Q 040499            4 ARGTVSYIAPEVFCR-----NFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH   77 (133)
Q Consensus         4 ~~gt~~~~ape~~~~-----~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (133)
                      .+||..|+|||++.+     ....++.++||||+|++++++++ |..||......       ..........   .....
T Consensus       192 ~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~-------~~~i~~~~~~---~~~~~  261 (434)
T 2rio_A          192 PSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSR-------ESNIIRGIFS---LDEMK  261 (434)
T ss_dssp             ---CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTH-------HHHHHHTCCC---CCCCT
T ss_pred             CCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhh-------HHHHhcCCCC---ccccc
Confidence            579999999999832     12568899999999999999998 88888643221       0111111110   00001


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....   ......+..++..||+.||.+||++.+|++
T Consensus       262 ~~~~---~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          262 CLHD---RSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             TCCC---HHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             cccc---ccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            1111   133345667778899999999999999975

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=96.21  Aligned_cols=91  Identities=23%  Similarity=0.320  Sum_probs=46.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++|+||+|++++++++|..||........         .......  ....+...+..
T Consensus       172 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~  238 (278)
T 3cok_A          172 LCGTPNYISPEIA--TRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNT---------LNKVVLA--DYEMPSFLSIE  238 (278)
T ss_dssp             ----------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC--------------CCSS--CCCCCTTSCHH
T ss_pred             ccCCCCcCCcchh--cCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHH---------HHHHhhc--ccCCccccCHH
Confidence            4688999999988  456778899999999999999999999875432210         1111111  11223334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             +..++..||+.||++||++.++++
T Consensus       239 -------~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          239 -------AKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             -------HHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             -------HHHHHHHHcccCHhhCCCHHHHhc
Confidence                   445555699999999999999986

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.59  E-value=1.3e-15  Score=106.58  Aligned_cols=92  Identities=17%  Similarity=0.304  Sum_probs=66.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +++||+.|+|||++  ....++.++|+||+|++++|+++|..||......      .    +...+... ....+...+.
T Consensus       501 ~~~GT~~Y~APE~l--~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~------~----~~~~i~~~-~~~~p~~~s~  567 (674)
T 3pfq_A          501 TFCGTPDYIAPEII--AYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDED------E----LFQSIMEH-NVAYPKSMSK  567 (674)
T ss_dssp             CCCSCSSSCCHHHH--TCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHSS-CCCCCTTSCH
T ss_pred             cccCCCcccCHhhh--cCCCCCccceEechHHHHHHHHcCCCCCCCCCHH------H----HHHHHHhC-CCCCCccCCH
Confidence            46899999999998  5678999999999999999999999999754221      1    22222211 2233455566


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCH-----HHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSM-----SKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~-----~~v~~  114 (133)
                      ...+++.+       ||+.||++|+++     .+|++
T Consensus       568 ~~~~li~~-------lL~~dP~~R~~~~~~~~~ei~~  597 (674)
T 3pfq_A          568 EAVAICKG-------LMTKHPGKRLGCGPEGERDIKE  597 (674)
T ss_dssp             HHHHHHHH-------HSCSSSTTCTTCSTTHHHHHHS
T ss_pred             HHHHHHHH-------HccCCHHHCCCCCCCcHHHHhc
Confidence            55555554       889999999997     77764

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.59  E-value=2.5e-16  Score=102.79  Aligned_cols=92  Identities=16%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||......      .    ....+... ....+...+.
T Consensus       183 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~------~----~~~~i~~~-~~~~p~~~~~  249 (353)
T 3txo_A          183 TFCGTPDYIAPEIL--QEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENED------D----LFEAILND-EVVYPTWLHE  249 (353)
T ss_dssp             ---CCGGGCCHHHH--HHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHC-CCCCCTTSCH
T ss_pred             ccCCCcCeEChhhc--CCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHH------H----HHHHHHcC-CCCCCCCCCH
Confidence            46799999999998  4567889999999999999999999999754221      1    11111111 1223444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCH------HHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSM------SKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~------~~v~~  114 (133)
                      ...+++.       .||+.||.+||++      .+|++
T Consensus       250 ~~~~li~-------~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          250 DATGILK-------SFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             HHHHHHH-------HHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             HHHHHHH-------HHhhhCHHHccCCcccCCHHHHhh
Confidence            5444444       4889999999998      77765

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.59  E-value=4.7e-15  Score=94.12  Aligned_cols=45  Identities=22%  Similarity=0.193  Sum_probs=36.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||++.+ ...++.++||||+|++++++++|..||...
T Consensus       160 ~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~~l~~g~~pf~~~  204 (288)
T 1ob3_A          160 EIVTLWYRAPDVLMG-SKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (288)
T ss_dssp             --CCCTTCCHHHHTT-CCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccCchheeC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            468999999998732 245789999999999999999999998654

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.59  E-value=1.8e-15  Score=95.90  Aligned_cols=96  Identities=24%  Similarity=0.317  Sum_probs=62.5

Q ss_pred             CCccccccCcccccc--ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            4 ARGTVSYIAPEVFCR--NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~--~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..||..|+|||.+..  ....++.++||||+|++++++++|..||......    ..    ..................+
T Consensus       169 ~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~  240 (290)
T 3fme_A          169 DAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTP----FQ----QLKQVVEEPSPQLPADKFS  240 (290)
T ss_dssp             -CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCH----HH----HHHHHHHSCCCCCCTTTSC
T ss_pred             cCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCch----HH----HHHHHhccCCCCcccccCC
Confidence            368999999998621  3456788999999999999999999998643221    00    1111222222212222334


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       +..++..||+.||++||++.++++
T Consensus       241 ~~-------~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          241 AE-------FVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HH-------HHHHHHHHhhcChhhCcCHHHHHh
Confidence            43       445555699999999999999986

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.59  E-value=2.2e-15  Score=97.87  Aligned_cols=45  Identities=22%  Similarity=0.204  Sum_probs=39.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||...
T Consensus       198 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (355)
T 2eu9_A          198 TIVATRHYRPPEVI--LELGWAQPCDVWSIGCILFEYYRGFTLFQTH  242 (355)
T ss_dssp             SSCSCGGGCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcCCCcccCCeee--ecCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            45799999999998  5567899999999999999999999999754

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.59  E-value=7.1e-15  Score=93.89  Aligned_cols=95  Identities=19%  Similarity=0.271  Sum_probs=64.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGLVT   81 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   81 (133)
                      .||..|+|||.+  ....++.++||||+|++++++++|..||......      .    ....+..+.   ........+
T Consensus       168 ~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~~~  235 (304)
T 2jam_A          168 CGTPGYVAPEVL--AQKPYSKAVDCWSIGVITYILLCGYPPFYEETES------K----LFEKIKEGYYEFESPFWDDIS  235 (304)
T ss_dssp             HSCCCBCCTTTB--SSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHH------H----HHHHHHHCCCCCCTTTTTTSC
T ss_pred             cCCCCccChHHh--ccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHH------H----HHHHHHcCCCCCCccccccCC
Confidence            488999999998  5567899999999999999999999998653211      1    111111111   111122334


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHcc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEG  118 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~  118 (133)
                      ..       +..++..||+.||++||++.++++  .+.+
T Consensus       236 ~~-------~~~li~~~l~~dp~~Rps~~~~l~h~~~~~  267 (304)
T 2jam_A          236 ES-------AKDFICHLLEKDPNERYTCEKALSHPWIDG  267 (304)
T ss_dssp             HH-------HHHHHHHHHCSSTTTSCCHHHHHTSHHHHS
T ss_pred             HH-------HHHHHHHHcCCChhHCcCHHHHhcCccccC
Confidence            43       444555589999999999999986  4544

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.59  E-value=2.3e-16  Score=102.67  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=63.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||......      .    ....+... ....+...+.
T Consensus       177 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~------~----~~~~i~~~-~~~~p~~~s~  243 (345)
T 1xjd_A          177 TFCGTPDYIAPEIL--LGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEE------E----LFHSIRMD-NPFYPRWLEK  243 (345)
T ss_dssp             CCCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHC-CCCCCTTSCH
T ss_pred             CCCCCcccCChhhh--cCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHH------H----HHHHHHhC-CCCCCcccCH
Confidence            46799999999998  5567899999999999999999999998754221      1    11111111 1223444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHH-HHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMS-KAV  113 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~-~v~  113 (133)
                      ...+++       ..||+.||++||++. +|+
T Consensus       244 ~~~~li-------~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          244 EAKDLL-------VKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             HHHHHH-------HHHSCSSGGGSBTTBSCGG
T ss_pred             HHHHHH-------HHHhcCCHhHcCCChHHHH
Confidence            444444       448999999999987 665

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.59  E-value=2.4e-15  Score=97.05  Aligned_cols=45  Identities=27%  Similarity=0.226  Sum_probs=39.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||...
T Consensus       193 ~~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~g~~pf~~~  237 (339)
T 1z57_A          193 TLVSTRHYRAPEVI--LALGWSQPCDVWSIGCILIEYYLGFTVFPTH  237 (339)
T ss_dssp             SSCSCGGGCCHHHH--TTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccCCccccChHHh--hCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            45789999999998  5567899999999999999999999998754

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.59  E-value=3.2e-15  Score=95.92  Aligned_cols=109  Identities=12%  Similarity=0.177  Sum_probs=65.2

Q ss_pred             CCccccccCccccccc---cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcc-----hhhhHHHHhhhcCCcc-c
Q 040499            4 ARGTVSYIAPEVFCRN---FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTE-----MYFPDWFYKLLEPGED-L   74 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~---~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~   74 (133)
                      .+||..|+|||++...   ...++.++||||+|++++++++|..||...........     ..........+..... .
T Consensus       181 ~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (316)
T 2ac3_A          181 PCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEF  260 (316)
T ss_dssp             -CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCC
T ss_pred             ccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCccc
Confidence            4589999999987321   13578899999999999999999999976543210000     0000111111111111 0


Q ss_pred             c--ccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           75 K--RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        75 ~--~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      .  .....+.       .+..++..||+.||++||++.++++  .+.+.
T Consensus       261 ~~~~~~~~~~-------~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~  302 (316)
T 2ac3_A          261 PDKDWAHISC-------AAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC  302 (316)
T ss_dssp             CHHHHTTSCH-------HHHHHHHHHSCSSTTTSCCHHHHHHSTTCC--
T ss_pred             CchhcccCCH-------HHHHHHHHHhhCChhhCCCHHHHhcChhhcCC
Confidence            0  0012233       4555666699999999999999987  44443

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.59  E-value=5.4e-16  Score=101.89  Aligned_cols=88  Identities=19%  Similarity=0.222  Sum_probs=61.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||......      ..   .......  ....+...+.
T Consensus       198 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~------~~---~~~i~~~--~~~~~~~~~~  264 (373)
T 2r5t_A          198 TFCGTPEYLAPEVL--HKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTA------EM---YDNILNK--PLQLKPNITN  264 (373)
T ss_dssp             SBSCCCCCCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHH------HH---HHHHHHS--CCCCCSSSCH
T ss_pred             cccCCccccCHHHh--CCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHH------HH---HHHHHhc--ccCCCCCCCH
Confidence            46899999999998  5567899999999999999999999999753221      11   1111111  1223344555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMS  110 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~  110 (133)
                      ...+++.       .||+.||.+|+++.
T Consensus       265 ~~~~li~-------~lL~~dp~~R~~~~  285 (373)
T 2r5t_A          265 SARHLLE-------GLLQKDRTKRLGAK  285 (373)
T ss_dssp             HHHHHHH-------HHTCSSGGGSTTTT
T ss_pred             HHHHHHH-------HHcccCHHhCCCCC
Confidence            4444444       48899999999974

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.58  E-value=7e-16  Score=101.36  Aligned_cols=87  Identities=9%  Similarity=0.024  Sum_probs=59.2

Q ss_pred             CCCccccccCccccccccC-----------ccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC
Q 040499            3 DARGTVSYIAPEVFCRNFG-----------GISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG   71 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~-----------~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (133)
                      +.+| ..|+|||++  ...           .++.++||||+|++++++++|..||.......          ....... 
T Consensus       262 ~~~g-~~y~aPE~~--~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~----------~~~~~~~-  327 (377)
T 3byv_A          262 SSVS-RGFEPPELE--ARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALG----------GSEWIFR-  327 (377)
T ss_dssp             CCCC-TTCCCHHHH--HHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------C----------CSGGGGS-
T ss_pred             CCCC-cCccChhhh--cccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCccccccc----------chhhhhh-
Confidence            3567 899999998  334           68899999999999999999999986543221          0000100 


Q ss_pred             ccccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           72 EDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                          .....+..       +..++..||+.||++||++.++++
T Consensus       328 ----~~~~~~~~-------~~~li~~~L~~dp~~Rpt~~e~l~  359 (377)
T 3byv_A          328 ----SCKNIPQP-------VRALLEGFLRYPKEDRLLPLQAME  359 (377)
T ss_dssp             ----SCCCCCHH-------HHHHHHHHTCSSGGGCCCHHHHHT
T ss_pred             ----hccCCCHH-------HHHHHHHHcCCCchhCCCHHHHhh
Confidence                11233443       445555699999999999999985

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.58  E-value=3.5e-15  Score=98.41  Aligned_cols=98  Identities=22%  Similarity=0.268  Sum_probs=64.9

Q ss_pred             CCCCccccccCccccccc-cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRN-FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~-~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ++.+||+.|+|||++... ...++.++|+||+|++++++++|..||.......   ...    ....+.. .....+...
T Consensus       172 ~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~---~~~----~~~~~~~-~~~~~p~~~  243 (384)
T 4fr4_A          172 TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTS---SKE----IVHTFET-TVVTYPSAW  243 (384)
T ss_dssp             CCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSC---HHH----HHHHHHH-CCCCCCTTS
T ss_pred             eccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCcc---HHH----HHHHHhh-cccCCCCcC
Confidence            356899999999998321 3458899999999999999999999997543321   011    1111111 112234444


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCC-HHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSS-MSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps-~~~v~~  114 (133)
                      +....       .++..||+.||.+||+ +.+|+.
T Consensus       244 s~~~~-------~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          244 SQEMV-------SLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             CHHHH-------HHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             CHHHH-------HHHHHHhcCCHhHhcccHHHHHc
Confidence            55444       4445599999999998 777764

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.58  E-value=6.4e-15  Score=96.51  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=63.0

Q ss_pred             CCCccccccCccccccc----cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC
Q 040499            3 DARGTVSYIAPEVFCRN----FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG   78 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~----~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (133)
                      ..+||..|+|||++...    ...++.++||||+|++++++++|..||.....      ......+... ..........
T Consensus       258 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~------~~~~~~i~~~-~~~~~~~~~~  330 (365)
T 2y7j_A          258 ELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ------ILMLRMIMEG-QYQFSSPEWD  330 (365)
T ss_dssp             CCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHT-CCCCCHHHHS
T ss_pred             cCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH------HHHHHHHHhC-CCCCCCcccc
Confidence            45799999999987321    23578899999999999999999999865321      1111111110 0000000112


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+.       .+..++..||+.||++||++.++++
T Consensus       331 ~~~~-------~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          331 DRSS-------TVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             SSCH-------HHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cCCH-------HHHHHHHHHcCCChhHCcCHHHHhc
Confidence            2333       3445556699999999999999986

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.58  E-value=3.9e-15  Score=95.77  Aligned_cols=46  Identities=20%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..+||..|+|||++.+ ...++.++||||+|++++++++|..||...
T Consensus       167 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~el~~g~~pf~~~  212 (317)
T 2pmi_A          167 SEVVTLWYRAPDVLMG-SRTYSTSIDIWSCGCILAEMITGKPLFPGT  212 (317)
T ss_dssp             CCCSCCTTCCHHHHTT-CCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcccccccCchHhhC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            3568999999998732 246789999999999999999999998754

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.58  E-value=1.1e-15  Score=98.51  Aligned_cols=95  Identities=17%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ..||..|+|||.+..   ....++.++||||+|++++++++|..||......      ..   .................
T Consensus       189 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~~---~~~~~~~~~~~~~~~~~  259 (326)
T 2x7f_A          189 FIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM------RA---LFLIPRNPAPRLKSKKW  259 (326)
T ss_dssp             --CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH------HH---HHHHHHSCCCCCSCSCS
T ss_pred             ccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH------HH---HHHhhcCccccCCcccc
Confidence            468999999998731   1356788999999999999999999998643211      00   11111111111112334


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +..       +..++..||+.||.+||++.++++
T Consensus       260 ~~~-------l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          260 SKK-------FQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             CHH-------HHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CHH-------HHHHHHHHhccChhhCCCHHHHhh
Confidence            443       444555599999999999999986

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.58  E-value=4.6e-15  Score=96.54  Aligned_cols=105  Identities=11%  Similarity=-0.006  Sum_probs=64.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccc-------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLK-------   75 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   75 (133)
                      ...||..|+|||++.+ ...++.++||||+|++++++++|..||......      .....+...........       
T Consensus       187 ~~~gt~~y~aPE~~~~-~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~  259 (351)
T 3mi9_A          187 NRVVTLWYRPPELLLG-ERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ------HQLALISQLCGSITPEVWPNVDNY  259 (351)
T ss_dssp             SSCSCGGGCCHHHHTT-CCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHHHHHCCCCTTTSTTGGGC
T ss_pred             CcccccCccCchhhcC-CCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChH------HHHHHHHHHhCCCChhhccccccc
Confidence            3568999999998732 245789999999999999999999998754221      11111111111000000       


Q ss_pred             -------ccCCCChhHHHH------HHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           76 -------RHGLVTEEEEVI------VRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        76 -------~~~~~~~~~~~~------~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             ............      ...+..++..||+.||++||++.++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  311 (351)
T 3mi9_A          260 ELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  311 (351)
T ss_dssp             GGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence                   000000011111      123567777899999999999999986

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.58  E-value=3.3e-15  Score=94.41  Aligned_cols=98  Identities=14%  Similarity=0.205  Sum_probs=66.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   80 (133)
                      ..||..|+|||.+  ....++.++|+||+|++++++++|..||......      .    ....+....   ........
T Consensus       171 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~  238 (283)
T 3bhy_A          171 IFGTPEFVAPEIV--NYEPLGLEADMWSIGVITYILLSGASPFLGETKQ------E----TLTNISAVNYDFDEEYFSNT  238 (283)
T ss_dssp             -CCCGGGCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHH------H----HHHHHHTTCCCCCHHHHTTC
T ss_pred             cCCCcCccCccee--cCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchH------H----HHHHhHhcccCCcchhcccC
Confidence            4689999999998  5567889999999999999999999998653221      1    111111111   11111222


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCc
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGL  120 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~  120 (133)
                      +.       .+..++..||+.||++||++.++++  .++++.
T Consensus       239 ~~-------~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  273 (283)
T 3bhy_A          239 SE-------LAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIR  273 (283)
T ss_dssp             CH-------HHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHH
T ss_pred             CH-------HHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHH
Confidence            33       4556666799999999999999986  455443

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.58  E-value=1.7e-14  Score=93.82  Aligned_cols=105  Identities=13%  Similarity=0.051  Sum_probs=62.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc-----
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH-----   77 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   77 (133)
                      ..+||..|+|||++.+ ...++.++||||+|++++++++|..++......      .....+............+     
T Consensus       171 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~  243 (346)
T 1ua2_A          171 HQVVTRWYRAPELLFG-ARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL------DQLTRIFETLGTPTEEQWPDMCSL  243 (346)
T ss_dssp             CSCCCCTTCCHHHHTT-CSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             cccccccccCchHhhC-CCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH------HHHHHHHHHcCCCChhhhhhhccC
Confidence            4578999999998732 235788999999999999999998887654211      1111111111000000000     


Q ss_pred             -C-----C---CC--hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 -G-----L---VT--EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 -~-----~---~~--~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                       .     .   .+  .........+..++..||+.||++|||+.++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  291 (346)
T 1ua2_A          244 PDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALK  291 (346)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             cccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhc
Confidence             0     0   00  000111124555666699999999999999986

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.57  E-value=9.5e-15  Score=97.32  Aligned_cols=111  Identities=15%  Similarity=0.085  Sum_probs=66.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhh-----------cCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLL-----------EPG   71 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-----------~~~   71 (133)
                      ..+||..|+|||++.+ ...++.++||||+|++++|+++|+.||.+....      .....+...+           ...
T Consensus       215 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~------~~l~~i~~~lg~p~~~~~~~~~~~  287 (420)
T 1j1b_A          215 SYICSRYYRAPELIFG-ATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV------DQLVEIIKVLGTPTREQIREMNPN  287 (420)
T ss_dssp             SCCSCTTSCCHHHHTT-CSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHHHCSCCHHHHHHHCSC
T ss_pred             eeeeCCCcCCHHHHcC-CCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHHhCCCCHHHHHhhChh
Confidence            4578999999998732 236889999999999999999999998764321      1111111100           000


Q ss_pred             -ccccccCCCChhHH-----HHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCc
Q 040499           72 -EDLKRHGLVTEEEE-----VIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGL  120 (133)
Q Consensus        72 -~~~~~~~~~~~~~~-----~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~  120 (133)
                       .....+........     .....+..|+..||+.||.+||++.++++  .++++.
T Consensus       288 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~  344 (420)
T 1j1b_A          288 YTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  344 (420)
T ss_dssp             CCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             hhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhcccc
Confidence             00001110000000     01124555666699999999999999985  555443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.57  E-value=1e-14  Score=93.87  Aligned_cols=102  Identities=18%  Similarity=0.098  Sum_probs=66.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc----------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE----------   72 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----------   72 (133)
                      ...||..|+|||++  ....++.++||||+|++++++++|..||......      .....+........          
T Consensus       178 ~~~~~~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~  249 (326)
T 1blx_A          178 SVVVTLWYRAPEVL--LQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV------DQLGKILDVIGLPGEEDWPRDVAL  249 (326)
T ss_dssp             CCCCCCTTCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHHHHHCCCCGGGSCTTCSS
T ss_pred             ccccccceeCHHHH--hcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHH------HHHHHHHHHcCCCCcccCcccccc
Confidence            35689999999998  5567899999999999999999999998754221      11111111100000          


Q ss_pred             ------------cccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           73 ------------DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        73 ------------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                                  ........+.       .+..++..||+.||.+||++.++++  .+.+.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  303 (326)
T 1blx_A          250 PRQAFHSKSAQPIEKFVTDIDE-------LGKDLLLKCLTFNPAKRISAYSALSHPYFQDL  303 (326)
T ss_dssp             CGGGSCCCCCCCGGGTCCSCCH-------HHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             chhhhcccCcchhhhccccCCH-------HHHHHHHHHcCCCcccCCCHHHHhcCcccccc
Confidence                        0001122233       3445566699999999999999985  44443

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.57  E-value=3.5e-15  Score=97.40  Aligned_cols=97  Identities=14%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||++......++.++||||+|++++++++|..||.......  ..   ..........  .+..+...+..
T Consensus       220 ~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~--~~---~~~~~~~~~~--~~~~~~~~~~~  292 (355)
T 1vzo_A          220 FCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKN--SQ---AEISRRILKS--EPPYPQEMSAL  292 (355)
T ss_dssp             GGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC--CH---HHHHHHHHHC--CCCCCTTSCHH
T ss_pred             cccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccc--hH---HHHHHHHhcc--CCCCCcccCHH
Confidence            56999999999984323457789999999999999999999987543321  11   1111111111  11223334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                             +..++..||+.||.+||     ++.++++
T Consensus       293 -------~~~li~~~L~~dP~~R~~~~~~s~~ell~  321 (355)
T 1vzo_A          293 -------AKDLIQRLLMKDPKKRLGCGPRDADEIKE  321 (355)
T ss_dssp             -------HHHHHHHHTCSSGGGSTTSSTTTHHHHHT
T ss_pred             -------HHHHHHHHhhhCHHHhcCCCCCCHHHHHc
Confidence                   34455559999999999     9999986

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.57  E-value=3e-15  Score=94.59  Aligned_cols=90  Identities=19%  Similarity=0.241  Sum_probs=61.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+.. ...++.++||||+|+++++++++..++...        .     ....+.....+..+...+..
T Consensus       190 ~~gt~~y~aPE~~~~-~~~~~~~~Di~slG~il~~l~~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~  255 (289)
T 1x8b_A          190 EEGDSRFLANEVLQE-NYTHLPKADIFALALTVVCAAGAEPLPRNG--------D-----QWHEIRQGRLPRIPQVLSQE  255 (289)
T ss_dssp             CCCCGGGCCHHHHTT-CCTTHHHHHHHHHHHHHHHHTTCCCCCSSS--------H-----HHHHHHTTCCCCCSSCCCHH
T ss_pred             cCCCccccChhHhcC-CCCCCchhhHHHHHHHHHHHhcCCCCCcch--------h-----HHHHHHcCCCCCCCcccCHH
Confidence            458999999999832 225668999999999999999887765321        1     11112222233344445554


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       .++..||+.||++||++.++++
T Consensus       256 ~~-------~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          256 FT-------ELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             HH-------HHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HH-------HHHHHHhCCCcccCCCHHHHhh
Confidence            44       4445599999999999999875

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.57  E-value=5.9e-15  Score=100.30  Aligned_cols=97  Identities=21%  Similarity=0.252  Sum_probs=65.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc-c--cccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED-L--KRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~   79 (133)
                      ..+||+.|+|||++  . ..++.++||||+|++++++++|..||......      .    ....+..+.. .  .....
T Consensus       207 ~~~gt~~y~aPE~~--~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  273 (504)
T 3q5i_A          207 DRLGTAYYIAPEVL--K-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQ------D----IIKKVEKGKYYFDFNDWKN  273 (504)
T ss_dssp             CCCSCTTTCCHHHH--T-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHCCCCCCHHHHTT
T ss_pred             cccCCcCCCCHHHh--c-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHH------H----HHHHHHcCCCCCCccccCC
Confidence            45799999999997  3 46899999999999999999999999754321      1    1111111111 0  11123


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      .+..       +..++..||+.||.+|||+.++++  .+.+.
T Consensus       274 ~s~~-------~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~  308 (504)
T 3q5i_A          274 ISDE-------AKELIKLMLTYDYNKRCTAEEALNSRWIKKY  308 (504)
T ss_dssp             SCHH-------HHHHHHHHTCSSTTTSCCHHHHHTSHHHHHT
T ss_pred             CCHH-------HHHHHHHHcCCChhHCCCHHHHhcCHhhhhc
Confidence            3443       444555599999999999999985  45443

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.57  E-value=2.5e-15  Score=97.07  Aligned_cols=92  Identities=17%  Similarity=0.228  Sum_probs=64.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|..||......      ..   .......  ....+...+.
T Consensus       180 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~------~~---~~~i~~~--~~~~p~~~~~  246 (327)
T 3a62_A          180 TFCGTIEYMAPEIL--MRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRK------KT---IDKILKC--KLNLPPYLTQ  246 (327)
T ss_dssp             TTSSCCTTSCHHHH--TTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH------HH---HHHHHHT--CCCCCTTSCH
T ss_pred             ccCCCcCccCHhhC--cCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHH------HH---HHHHHhC--CCCCCCCCCH
Confidence            35799999999998  5567889999999999999999999998753221      11   1111111  1122344455


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...+       ++..||+.||.+||     ++.++++
T Consensus       247 ~~~~-------li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          247 EARD-------LLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             HHHH-------HHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             HHHH-------HHHHHHhcCHhhccCCCCCCHHHHHc
Confidence            4444       44459999999999     7788876

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.57  E-value=2.3e-15  Score=99.75  Aligned_cols=47  Identities=19%  Similarity=0.173  Sum_probs=37.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      ..+||..|+|||++.+ ...++.++||||+|++++++++|..||....
T Consensus       194 ~~~gt~~y~aPE~~~~-~~~~~~~~DiwSlG~il~ell~g~~pf~~~~  240 (405)
T 3rgf_A          194 PVVVTFWYRAPELLLG-ARHYTKAIDIWAIGCIFAELLTSEPIFHCRQ  240 (405)
T ss_dssp             ---CCCTTCCHHHHTT-CCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC
T ss_pred             CceecCcccCchhhcC-CCcccchhhhHHHHHHHHHHHhCCCCCCCcc
Confidence            3578999999998832 2458899999999999999999999997543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.57  E-value=5.1e-16  Score=100.11  Aligned_cols=95  Identities=20%  Similarity=0.256  Sum_probs=48.2

Q ss_pred             CCccccccCcccccc--ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc----
Q 040499            4 ARGTVSYIAPEVFCR--NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH----   77 (133)
Q Consensus         4 ~~gt~~~~ape~~~~--~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   77 (133)
                      ..||..|+|||.+..  ....++.++||||+|++++++++|..||........         .......+..+..+    
T Consensus       185 ~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~---------~~~~~~~~~~~~~~~~~~  255 (327)
T 3aln_A          185 DAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFD---------QLTQVVKGDPPQLSNSEE  255 (327)
T ss_dssp             ---------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC----------------CCCCCSCCCCCCCCSS
T ss_pred             CCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHH---------HHHHHhcCCCCCCCCccc
Confidence            368999999998721  234578899999999999999999999875322110         11111111111111    


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+.       .+..++..||+.||++||++.+|++
T Consensus       256 ~~~~~-------~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          256 REFSP-------SFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             CCCCH-------HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             ccCCH-------HHHHHHHHHhhCChhhCcCHHHHHh
Confidence            12333       3455556699999999999999864

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=94.57  Aligned_cols=46  Identities=20%  Similarity=0.214  Sum_probs=37.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||.+.. ...++.++||||+|++++++++|..||...
T Consensus       182 ~~~~t~~y~aPE~~~~-~~~~~~~~Di~slG~il~el~~g~~pf~~~  227 (353)
T 3coi_A          182 GYVVTRWYRAPEVILS-WMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  227 (353)
T ss_dssp             --CCSBCCSCHHHHSC-CSCCCTTHHHHHHHHHHHHHHHSSCSSBSS
T ss_pred             ccccCcCcCCHHHHhC-cCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            3578999999998732 257889999999999999999999998754

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.57  E-value=4.4e-15  Score=100.39  Aligned_cols=96  Identities=25%  Similarity=0.268  Sum_probs=64.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cc--cccCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DL--KRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~   80 (133)
                      .+||+.|+|||++  . +.++.++||||+|++++++++|..||......      .    ....+..+. ..  ......
T Consensus       188 ~~gt~~y~aPE~~--~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~~  254 (484)
T 3nyv_A          188 KIGTAYYIAPEVL--H-GTYDEKCDVWSTGVILYILLSGCPPFNGANEY------D----ILKKVEKGKYTFELPQWKKV  254 (484)
T ss_dssp             HTTGGGTCCHHHH--H-TCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHCCCCCCSGGGGGS
T ss_pred             CCCCccccCceee--c-CCCCCcceeHHHHHHHHHHHHCCCCCCCCCHH------H----HHHHHHcCCCCCCCcccccC
Confidence            3689999999998  3 36889999999999999999999999754221      1    111111111 11  111223


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      +..       +..++..||+.||.+|||+.++++  .+...
T Consensus       255 s~~-------~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~  288 (484)
T 3nyv_A          255 SES-------AKDLIRKMLTYVPSMRISARDALDHEWIQTY  288 (484)
T ss_dssp             CHH-------HHHHHHHHTCSSGGGSCCHHHHHTSHHHHHH
T ss_pred             CHH-------HHHHHHHHCCCChhHCcCHHHHhhChhhccc
Confidence            443       444555599999999999999985  44443

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.57  E-value=1.4e-14  Score=95.84  Aligned_cols=105  Identities=14%  Similarity=0.032  Sum_probs=67.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhh--------------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLL--------------   68 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------   68 (133)
                      ..+||..|+|||++.+ ...++.++||||+|++++++++|..||.+....      .....+...+              
T Consensus       200 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~------~~l~~i~~~~g~p~~~~~~~~~~~  272 (394)
T 4e7w_A          200 SYICSRYYRAPELIFG-ATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI------DQLVEIIKVLGTPSREQIKTMNPN  272 (394)
T ss_dssp             SSCSCGGGCCHHHHTT-CSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHHHCCCCHHHHHHHCGG
T ss_pred             ccccCcCccCHHHHcC-CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHHhCCCCHHHHHhhChh
Confidence            4578999999998732 235899999999999999999999999764321      1111011100              


Q ss_pred             -cCCcccc---------ccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCcc
Q 040499           69 -EPGEDLK---------RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLE  121 (133)
Q Consensus        69 -~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~  121 (133)
                       .....+.         .+...+.       .+..++..||+.||.+||++.+++.  .++++..
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  330 (394)
T 4e7w_A          273 YMEHKFPQIRPHPFSKVFRPRTPP-------DAIDLISRLLEYTPSARLTAIEALCHPFFDELRT  330 (394)
T ss_dssp             GSSSCCCCCCCCCHHHHSCTTCCH-------HHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTS
T ss_pred             hhhhccccccCCcHHHhccccCCH-------HHHHHHHHHhCCChhhCCCHHHHhcChhhhhhcc
Confidence             0000000         0111223       4556666699999999999999986  4555443

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.57  E-value=1.8e-15  Score=95.41  Aligned_cols=92  Identities=16%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccc---ccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLK---RHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~   79 (133)
                      ...||..|+|||.+  . +.++.++||||+|++++++++|..||......      .    ....+.......   ....
T Consensus       167 ~~~~t~~y~aPE~~--~-~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~  233 (277)
T 3f3z_A          167 TKVGTPYYVSPQVL--E-GLYGPECDEWSAGVMMYVLLCGYPPFSAPTDS------E----VMLKIREGTFTFPEKDWLN  233 (277)
T ss_dssp             CCCSCTTTCCHHHH--T-TCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHCCCCCCHHHHTT
T ss_pred             ccCCCCCccChHHh--c-ccCCchhhehhHHHHHHHHHHCCCCCCCCCHH------H----HHHHHHhCCCCCCchhhhc
Confidence            35689999999987  3 35889999999999999999999998653221      1    111111111100   0112


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.       .+..++..||+.||++||++.++++
T Consensus       234 ~~~-------~~~~li~~~l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          234 VSP-------QAESLIRRLLTKSPKQRITSLQALE  261 (277)
T ss_dssp             SCH-------HHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CCH-------HHHHHHHHHccCChhhCcCHHHHhc
Confidence            333       4455566699999999999999975

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.56  E-value=5.7e-15  Score=95.44  Aligned_cols=104  Identities=13%  Similarity=0.059  Sum_probs=61.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc---------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL---------   74 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   74 (133)
                      .+||..|+|||++.. ...++.++||||+|++++++++|..||......      ................         
T Consensus       197 ~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  269 (329)
T 3gbz_A          197 EIITLWYRPPEILLG-SRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEI------DQLFKIFEVLGLPDDTTWPGVTALP  269 (329)
T ss_dssp             ---CCTTCCHHHHTT-CCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHHHCCCCTTTSTTGGGST
T ss_pred             CcCCccccCHHHhcC-CCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHH------HHHHHHHHHhCCCchhhhhhhhhhh
Confidence            467999999999832 235789999999999999999999998654221      1111111110000000         


Q ss_pred             ----cccCCCChhHHH-----HHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           75 ----KRHGLVTEEEEV-----IVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        75 ----~~~~~~~~~~~~-----~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                          ..+.........     ....+..++..||+.||++||++.++++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          270 DWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             TCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence                000000000000     1124556667799999999999999986

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.56  E-value=8.1e-15  Score=93.17  Aligned_cols=45  Identities=20%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ...||..|+|||++.+ ...++.++||||+|+++++++++..|+..
T Consensus       160 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~~l~~~~~p~~~  204 (292)
T 3o0g_A          160 AEVVTLWYRPPDVLFG-AKLYSTSIDMWSAGCIFAELANAGRPLFP  204 (292)
T ss_dssp             SCCSCGGGCCHHHHTT-CSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred             CCccccCCcChHHHcC-CCCcCchHHHHHHHHHHHHHHHcCCCCcC
Confidence            3568999999998832 23478999999999999999998887643

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.56  E-value=3.5e-15  Score=99.73  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             CCCccccccCccccccc-cCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            3 DARGTVSYIAPEVFCRN-FGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~-~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ..+||..|+|||++... ...++.++||||+|++++++++ |..||......           ............... .
T Consensus       185 ~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~-----------~~~~~~~~~~~~~~~-~  252 (432)
T 3p23_A          185 GVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR-----------QANILLGACSLDCLH-P  252 (432)
T ss_dssp             -CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH-----------HHHHHTTCCCCTTSC-T
T ss_pred             ccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH-----------HHHHHhccCCccccC-c
Confidence            35699999999998321 3456779999999999999999 88888533211           111111111110000 0


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..   .....+..++..||+.||++||++.+|++
T Consensus       253 ~~---~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          253 EK---HEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             TC---HHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cc---cccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            11   11223456777799999999999999984

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.56  E-value=3.9e-16  Score=100.57  Aligned_cols=90  Identities=17%  Similarity=0.197  Sum_probs=60.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||..|+|||.+  ....++.++||||+|+++++++++..++..           ... ........       ..+..
T Consensus       236 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~el~~~~~~~~~-----------~~~-~~~~~~~~-------~~~~~  294 (332)
T 3qd2_B          236 QVGTKLYMSPEQI--HGNNYSHKVDIFSLGLILFELLYSFSTQME-----------RVR-IITDVRNL-------KFPLL  294 (332)
T ss_dssp             CC-CGGGSCHHHH--HCCCCCTHHHHHHHHHHHHHHHSCCCCHHH-----------HHH-HHHHHHTT-------CCCHH
T ss_pred             cCCCcCccChHHh--cCCCCcchhhHHHHHHHHHHHHHcCCChhH-----------HHH-HHHHhhcc-------CCCcc
Confidence            4699999999998  556789999999999999999987554311           000 11111111       11222


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .......+..++..||+.||++||++.++++
T Consensus       295 ~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          295 FTQKYPQEHMMVQDMLSPSPTERPEATDIIE  325 (332)
T ss_dssp             HHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred             cccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence            2333344566777799999999999999986

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=93.40  Aligned_cols=95  Identities=19%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc--C
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH--G   78 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   78 (133)
                      ..||..|+|||.+..   ....++.++||||+|++++++++|..||......     ..   ........ .....+  .
T Consensus       184 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~---~~~~~~~~-~~~~~~~~~  254 (318)
T 2dyl_A          184 SAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD-----FE---VLTKVLQE-EPPLLPGHM  254 (318)
T ss_dssp             ---CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH-----HH---HHHHHHHS-CCCCCCSSS
T ss_pred             cCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc-----HH---HHHHHhcc-CCCCCCccC
Confidence            468999999998732   1346788999999999999999999998753221     11   11111111 111111  2


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..+..       +..++..||+.||.+||++.+|++
T Consensus       255 ~~~~~-------l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          255 GFSGD-------FQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             CCCHH-------HHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCCHH-------HHHHHHHHccCChhHCcCHHHHhh
Confidence            23443       445555699999999999999875

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.55  E-value=9.9e-15  Score=94.74  Aligned_cols=93  Identities=15%  Similarity=0.292  Sum_probs=62.6

Q ss_pred             CCCccccccCccccccccC-cccc-ccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc---
Q 040499            3 DARGTVSYIAPEVFCRNFG-GISH-KSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH---   77 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~-~~~~-~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   77 (133)
                      ...||..|+|||.+  ... .++. ++||||+|++++++++|..||......     ..    ....+..... ..+   
T Consensus       209 ~~~~~~~y~aPE~~--~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-----~~----~~~~i~~~~~-~~~~~~  276 (348)
T 2pml_X          209 GSRGTYEFMPPEFF--SNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISL-----VE----LFNNIRTKNI-EYPLDR  276 (348)
T ss_dssp             SSCSCGGGCCGGGG--SSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCS-----HH----HHHHHTSCCC-CCCCSS
T ss_pred             CCCCCcCccCchhh--cCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcH-----HH----HHHHHhccCc-CCccch
Confidence            35689999999998  333 5555 999999999999999999998754321     01    1111111110 111   


Q ss_pred             ----------------CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 ----------------GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ----------------~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                                      ...+.       .+..++..||+.||.+||++.++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~-------~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          277 NHFLYPLTNKKSTCSNNFLSN-------EDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             SSSTTTTCC--------CCCH-------HHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhhhccccccccccchhhcCH-------HHHHHHHHHccCChhhCCCHHHHhc
Confidence                            12233       4555666699999999999999986

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.55  E-value=1e-14  Score=92.96  Aligned_cols=95  Identities=19%  Similarity=0.236  Sum_probs=62.0

Q ss_pred             CCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCC
Q 040499            4 ARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGL   79 (133)
Q Consensus         4 ~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   79 (133)
                      ..||..|+|||.+..   ....++.++||||+|++++++++|..|+......         ........... ....+..
T Consensus       177 ~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~  247 (302)
T 2j7t_A          177 FIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM---------RVLLKIAKSDPPTLLTPSK  247 (302)
T ss_dssp             --CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH---------HHHHHHHHSCCCCCSSGGG
T ss_pred             ccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHH---------HHHHHHhccCCcccCCccc
Confidence            468999999998721   2356788999999999999999999998654221         01111111111 1111223


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+.       .+..++..||+.||++||++.++++
T Consensus       248 ~~~-------~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          248 WSV-------EFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             SCH-------HHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             cCH-------HHHHHHHHHcccChhhCCCHHHHhc
Confidence            333       3445556699999999999999875

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.55  E-value=1.7e-14  Score=93.85  Aligned_cols=110  Identities=21%  Similarity=0.105  Sum_probs=67.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCC-------------------CcchhhhHHH
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTS-------------------STEMYFPDWF   64 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~-------------------~~~~~~~~~~   64 (133)
                      .+||..|+|||++. ....++.++||||+|++++++++|..||........                   ........+.
T Consensus       182 ~~gt~~y~aPE~~~-~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (353)
T 2b9h_A          182 FVATRWYRAPEVML-TSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYI  260 (353)
T ss_dssp             CCCCGGGCCHHHHH-SCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHH
T ss_pred             ccccccccCCeeec-cCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHh
Confidence            57899999999863 235788999999999999999999999875431100                   0000000000


Q ss_pred             HhhhcCCc---cccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccC
Q 040499           65 YKLLEPGE---DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEA  122 (133)
Q Consensus        65 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~  122 (133)
                      .. .....   ........+.       .+..++..||+.||++||++.++++  .++.....
T Consensus       261 ~~-~~~~~~~~~~~~~~~~~~-------~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~  315 (353)
T 2b9h_A          261 KS-LPMYPAAPLEKMFPRVNP-------KGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHDP  315 (353)
T ss_dssp             HT-SCCCCCCCHHHHSTTSCH-------HHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCT
T ss_pred             hc-ccCCCCcchhhhcccCCH-------HHHHHHHHhcCcCcccCCCHHHHhcCccccccCCc
Confidence            00 00000   0000112233       4456666699999999999999987  56655443

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.55  E-value=2.2e-15  Score=95.77  Aligned_cols=91  Identities=21%  Similarity=0.314  Sum_probs=63.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++|+||+|++++++++|..||......         . ....+... ....+...+..
T Consensus       175 ~~~~~~y~aPE~~--~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---------~-~~~~~~~~-~~~~~~~~~~~  241 (294)
T 2rku_A          175 LCGTPNYIAPEVL--SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK---------E-TYLRIKKN-EYSIPKHINPV  241 (294)
T ss_dssp             CCSCCSSCCHHHH--TTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---------H-HHHHHHTT-CCCCCTTSCHH
T ss_pred             ccCCCCcCCcchh--ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---------H-HHHHHhhc-cCCCccccCHH
Confidence            4688999999998  5567888999999999999999999998653211         0 11111111 11223334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                             +..++..||+.||++||++.++++
T Consensus       242 -------~~~li~~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          242 -------AASLIQKMLQTDPTARPTINELLN  265 (294)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             -------HHHHHHHHcccChhhCcCHHHHhh
Confidence                   444555699999999999999986

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.55  E-value=7.6e-15  Score=100.46  Aligned_cols=96  Identities=16%  Similarity=0.233  Sum_probs=65.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||.......  ....+   .......  ....+...+.
T Consensus       348 ~~~GT~~Y~APE~l--~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~--~~~~~---~~~i~~~--~~~~p~~~s~  418 (543)
T 3c4z_A          348 GYAGTPGFMAPELL--LGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV--ENKEL---KQRVLEQ--AVTYPDKFSP  418 (543)
T ss_dssp             CCCSCTTTSCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC--CHHHH---HHHHHHC--CCCCCTTSCH
T ss_pred             cccCCccccChhhh--cCCCCChHHhcCcchHHHHHHHhCCCCCCCCccch--hHHHH---HHHHhhc--ccCCCcccCH
Confidence            35899999999998  55688999999999999999999999997653221  11111   1111111  1123444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCH-----HHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSM-----SKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~-----~~v~~  114 (133)
                      ...+++.       .||+.||.+||++     .+|+.
T Consensus       419 ~~~~li~-------~lL~~dP~~R~~~~~~~a~ei~~  448 (543)
T 3c4z_A          419 ASKDFCE-------ALLQKDPEKRLGFRDGSCDGLRT  448 (543)
T ss_dssp             HHHHHHH-------HHSCSSGGGSCCCBTTBSHHHHT
T ss_pred             HHHHHHH-------HhccCCHhHCCCCcccCHHHHHc
Confidence            5444444       4899999999964     66764

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.54  E-value=1.6e-15  Score=98.16  Aligned_cols=95  Identities=19%  Similarity=0.319  Sum_probs=65.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++||||+|++++++++|..||......         ........ . ....+...+..
T Consensus       201 ~~gt~~y~aPE~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---------~~~~~~~~-~-~~~~~~~~~~~  267 (335)
T 2owb_A          201 LCGTPNYIAPEVL--SKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK---------ETYLRIKK-N-EYSIPKHINPV  267 (335)
T ss_dssp             CCSCCSSCCHHHH--HTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---------HHHHHHHH-T-CCCCCTTSCHH
T ss_pred             cCCCccccCHHHh--ccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH---------HHHHHHhc-C-CCCCCccCCHH
Confidence            4689999999998  5567888999999999999999999998653211         00111111 1 11223334443


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEG  118 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~  118 (133)
                             +..++..||+.||++||++.++++  .+..
T Consensus       268 -------~~~li~~~l~~dp~~Rps~~ell~~~~~~~  297 (335)
T 2owb_A          268 -------AASLIQKMLQTDPTARPTINELLNDEFFTS  297 (335)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCGGGGGGSHHHHT
T ss_pred             -------HHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence                   344555599999999999999986  4443

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.54  E-value=8.4e-15  Score=94.28  Aligned_cols=97  Identities=19%  Similarity=0.198  Sum_probs=63.0

Q ss_pred             CccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            5 RGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         5 ~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .||..|+|||++.. ....++.++||||+|++++++++|..||.......     ........ ......+......+. 
T Consensus       177 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~-  249 (322)
T 2ycf_A          177 CGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-----SLKDQITS-GKYNFIPEVWAEVSE-  249 (322)
T ss_dssp             HSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-----CHHHHHHH-TCCCCCHHHHTTSCH-
T ss_pred             cCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-----HHHHHHHh-CccccCchhhhhcCH-
Confidence            58899999998621 24567889999999999999999999987543321     01111110 000001111122333 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .+..++..||+.||++||++.++++
T Consensus       250 ------~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          250 ------KALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             ------HHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ------HHHHHHHHHcccCHhhCCCHHHHhh
Confidence                  4555666699999999999999874

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.54  E-value=5.8e-15  Score=101.54  Aligned_cols=96  Identities=17%  Similarity=0.239  Sum_probs=66.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++|+||+|++++++++|..||.......  ....    +...+.. .....+...+.
T Consensus       344 ~~~GT~~Y~APEvl--~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~--~~~~----i~~~i~~-~~~~~p~~~s~  414 (576)
T 2acx_A          344 GRVGTVGYMAPEVV--KNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI--KREE----VERLVKE-VPEEYSERFSP  414 (576)
T ss_dssp             CCCSCGGGCCHHHH--TTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC--CHHH----HHHHHHH-CCCCCCTTSCH
T ss_pred             ccCCCccccCHHHH--cCCCCCccchHHHHHHHHHHHHhCCCCCcccccch--hHHH----HHHHhhc-ccccCCccCCH
Confidence            46799999999998  55678999999999999999999999997643321  1111    1111111 11222344555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...+++.       .||+.||.+||     ++.+|++
T Consensus       415 ~~~dLI~-------~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          415 QARSLCS-------QLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             HHHHHHH-------HHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             HHHHHHH-------HhccCCHHHcCCCCCCCHHHHHh
Confidence            5444444       48899999999     7888875

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.54  E-value=4.7e-15  Score=94.47  Aligned_cols=94  Identities=20%  Similarity=0.307  Sum_probs=61.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc--------cc
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED--------LK   75 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~   75 (133)
                      ..||..|+|||.+.. ...++.++||||+|++++++++|..||.......      .   ..........        ..
T Consensus       186 ~~~~~~y~aPE~~~~-~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~  255 (303)
T 2vwi_A          186 FVGTPCWMAPEVMEQ-VRGYDFKADIWSFGITAIELATGAAPYHKYPPMK------V---LMLTLQNDPPSLETGVQDKE  255 (303)
T ss_dssp             --CCCTTCCHHHHHH-HHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG------H---HHHHHTSSCCCTTC-----C
T ss_pred             cCCCccccCHHHhcc-ccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh------H---HHHHhccCCCccccccccch
Confidence            468999999998732 1357889999999999999999999987543221      0   1111111100        00


Q ss_pred             ccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           76 RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .....+.       .+..++..||+.||.+||++.++++
T Consensus       256 ~~~~~~~-------~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          256 MLKKYGK-------SFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             CCCCCCH-------HHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             hhhhhhH-------HHHHHHHHHccCChhhCcCHHHHhh
Confidence            1112233       3455666699999999999999986

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.54  E-value=8.5e-15  Score=94.28  Aligned_cols=91  Identities=19%  Similarity=0.306  Sum_probs=62.9

Q ss_pred             CCCccccccCccccccccCc-cccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGG-ISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~-~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ...||..|+|||++.  ... ++.++||||+|++++++++|..||.....            ..   ..  ....+...+
T Consensus       207 ~~~gt~~y~aPE~~~--~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~------------~~---~~--~~~~~~~~~  267 (320)
T 3a99_A          207 DFDGTRVYSPPEWIR--YHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE------------II---RG--QVFFRQRVS  267 (320)
T ss_dssp             CCCSCGGGSCHHHHH--HSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH------------HH---HC--CCCCSSCCC
T ss_pred             CCCCCccCCChHHhc--cCCCCCccchHHhHHHHHHHHHHCCCCCCChhh------------hh---cc--cccccccCC
Confidence            356899999999873  334 46789999999999999999999853210            11   00  111223344


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      ..       +..++..||+.||++||++.+|++  .+++.
T Consensus       268 ~~-------~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~  300 (320)
T 3a99_A          268 SE-------CQHLIRWCLALRPSDRPTFEEIQNHPWMQDV  300 (320)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             HH-------HHHHHHHHccCChhhCcCHHHHhcCHhhcCc
Confidence            43       445555699999999999999986  44443

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.54  E-value=6.7e-15  Score=92.72  Aligned_cols=96  Identities=16%  Similarity=0.241  Sum_probs=58.4

Q ss_pred             CCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+  ....+ +.++|+||+|++++++++|..||......      .    ....+... ....+...+.
T Consensus       170 ~~~~~~y~aPE~~--~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~------~----~~~~~~~~-~~~~~~~~~~  236 (276)
T 2h6d_A          170 SCGSPNYAAPEVI--SGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVP------T----LFKKIRGG-VFYIPEYLNR  236 (276)
T ss_dssp             -------CCTGGG--TTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHC-CCCCCTTSCH
T ss_pred             ccCCccccCHHHH--cCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHH------H----HHHHhhcC-cccCchhcCH
Confidence            4588999999998  33333 68999999999999999999998643211      1    11111111 1112333344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      .       +..++..||+.||++||++.+|++  .+.+.
T Consensus       237 ~-------l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          237 S-------VATLLMHMLQVDPLKRATIKDIREHEWFKQD  268 (276)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             H-------HHHHHHHHccCChhhCCCHHHHHhChhhccC
Confidence            3       444555599999999999999987  45443

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.53  E-value=8e-15  Score=95.72  Aligned_cols=45  Identities=20%  Similarity=0.298  Sum_probs=36.3

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||++.. ...++.++||||+|++++++++|..||...
T Consensus       193 ~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~~l~~g~~pf~~~  237 (362)
T 3pg1_A          193 YVTHRWYRAPELVMQ-FKGFTKLVDMWSAGCVMAEMFNRKALFRGS  237 (362)
T ss_dssp             ---CGGGCCHHHHTT-CTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ecccceecCcHHhcC-CCCCCcHhHHHhHHHHHHHHHhCCCCCCCC
Confidence            468899999998732 256889999999999999999999998754

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.53  E-value=3.3e-15  Score=95.62  Aligned_cols=104  Identities=15%  Similarity=0.108  Sum_probs=60.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcC-------------
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEP-------------   70 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------------   70 (133)
                      ..||..|+|||.+.. ...++.++||||+|++++++++|..||.......      ...........             
T Consensus       162 ~~~~~~y~aPE~~~~-~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  234 (311)
T 4agu_A          162 EVATRWYRSPELLVG-DTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVD------QLYLIRKTLGDLIPRHQQVFSTNQ  234 (311)
T ss_dssp             ----GGGCCHHHHHT-CSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHHHCSCCHHHHHHHHTCG
T ss_pred             CcCCccccChHHHhc-CCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH------HHHHHHHHhccccccccccccccc
Confidence            468999999998732 3567899999999999999999999986543211      00001110000             


Q ss_pred             ---CccccccCCCChh---HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           71 ---GEDLKRHGLVTEE---EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        71 ---~~~~~~~~~~~~~---~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                         ......+......   .......+..++..||+.||++|||++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  284 (311)
T 4agu_A          235 YFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH  284 (311)
T ss_dssp             GGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred             ccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence               0000001100000   0011223556677799999999999999985

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.53  E-value=1.7e-14  Score=94.95  Aligned_cols=46  Identities=17%  Similarity=0.127  Sum_probs=38.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||.+.+ ...++.++||||+|++++++++|..||.+.
T Consensus       200 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~il~ell~g~~pf~~~  245 (383)
T 3eb0_A          200 AYICSRFYRAPELMLG-ATEYTPSIDLWSIGCVFGELILGKPLFSGE  245 (383)
T ss_dssp             CCCCCSSCCCHHHHTT-CSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CcccCCCccCHHHhcC-CCCCCcchhhhhHHHHHHHHHhCCCCCCCC
Confidence            3568999999998732 235889999999999999999999998754

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.53  E-value=1.8e-14  Score=95.81  Aligned_cols=98  Identities=17%  Similarity=0.110  Sum_probs=61.2

Q ss_pred             CCCccccccCccccccc-----cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc
Q 040499            3 DARGTVSYIAPEVFCRN-----FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH   77 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~-----~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (133)
                      ..+||+.|+|||++...     ...++.++|+||+|++++|+++|..||......      .....+...-.....+..+
T Consensus       222 ~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~------~~~~~i~~~~~~~~~p~~~  295 (412)
T 2vd5_A          222 VAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA------ETYGKIVHYKEHLSLPLVD  295 (412)
T ss_dssp             SCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH------HHHHHHHTHHHHCCCC---
T ss_pred             eeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH------HHHHHHHhcccCcCCCccc
Confidence            35899999999998321     356889999999999999999999999754221      1111111100000111112


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCC---CCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDR---SSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~R---ps~~~v~~  114 (133)
                      ...+....+++       ..||. +|.+|   +++++|++
T Consensus       296 ~~~s~~~~dli-------~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          296 EGVPEEARDFI-------QRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             -CCCHHHHHHH-------HTTSS-CGGGCTTTTTHHHHHT
T ss_pred             cCCCHHHHHHH-------HHHcC-ChhhcCCCCCHHHHhc
Confidence            33455444444       44888 89998   58999875

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.52  E-value=6.7e-15  Score=97.78  Aligned_cols=96  Identities=17%  Similarity=0.222  Sum_probs=63.6

Q ss_pred             CCCccccccCcccccccc--CccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcccccc--C
Q 040499            3 DARGTVSYIAPEVFCRNF--GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRH--G   78 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~--~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   78 (133)
                      +.+||+.|+|||++....  ..++.++|+||+|++++++++|..||......      ..   .............+  .
T Consensus       228 ~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~------~~---~~~i~~~~~~~~~p~~~  298 (410)
T 3v8s_A          228 TAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLV------GT---YSKIMNHKNSLTFPDDN  298 (410)
T ss_dssp             SCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHH------HH---HHHHHTHHHHCCCCTTC
T ss_pred             CCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChh------hH---HHHHHhccccccCCCcc
Confidence            568999999999983221  12789999999999999999999999754321      11   11111111111112  2


Q ss_pred             CCChhHHHHHHHHHHhhhhhccCCCCC--CCCHHHHHH
Q 040499           79 LVTEEEEVIVRKMIIVRLWCIQTNPSD--RSSMSKAVE  114 (133)
Q Consensus        79 ~~~~~~~~~~~~~~~l~~~cl~~~p~~--Rps~~~v~~  114 (133)
                      ..+....+++.+       ||+.+|.+  |+++.+|++
T Consensus       299 ~~s~~~~~li~~-------lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          299 DISKEAKNLICA-------FLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             CCCHHHHHHHHH-------HSSCGGGCTTSSCHHHHHT
T ss_pred             cccHHHHHHHHH-------HccChhhhCCCCCHHHHhc
Confidence            345555555554       77888888  999999986

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.52  E-value=1.1e-14  Score=97.51  Aligned_cols=99  Identities=16%  Similarity=0.146  Sum_probs=63.0

Q ss_pred             CCCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCC
Q 040499            3 DARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (133)
                      ..+||+.|+|||++..   ....++.++||||+|++++|+++|..||......      .....+.........+.....
T Consensus       235 ~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~------~~~~~i~~~~~~~~~p~~~~~  308 (437)
T 4aw2_A          235 VAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLV------ETYGKIMNHKERFQFPTQVTD  308 (437)
T ss_dssp             SCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH------HHHHHHHTHHHHCCCCSSCCC
T ss_pred             cccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChh------HHHHhhhhccccccCCccccc
Confidence            3689999999999831   1457889999999999999999999999754221      111111110000111111123


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCC--CCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSD--RSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~--Rps~~~v~~  114 (133)
                      .+....+++.+       ||..+|++  |++++++++
T Consensus       309 ~s~~~~dLi~~-------lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          309 VSENAKDLIRR-------LICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             SCHHHHHHHHT-------TSSCGGGCTTTTTTHHHHT
T ss_pred             CCHHHHHHHHH-------HhcccccccCCCCHHHHhC
Confidence            55655555555       55666666  999999986

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.51  E-value=3.3e-14  Score=90.15  Aligned_cols=90  Identities=24%  Similarity=0.303  Sum_probs=61.3

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-c--ccccCCCC
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-D--LKRHGLVT   81 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~   81 (133)
                      .||..|+|||.+  . +.++.++|+||+|++++++++|..||......      .    ....+..+. .  .......+
T Consensus       184 ~~~~~y~aPE~~--~-~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~------~----~~~~~~~~~~~~~~~~~~~~~  250 (287)
T 2wei_A          184 IGTAYYIAPEVL--R-GTYDEKCDVWSAGVILYILLSGTPPFYGKNEY------D----ILKRVETGKYAFDLPQWRTIS  250 (287)
T ss_dssp             HHHHTTCCHHHH--T-TCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHCCCCCCSGGGTTSC
T ss_pred             cCcccccChHHh--c-CCCCCchhhHhHHHHHHHHHhCCCCCCCCCHH------H----HHHHHHcCCCCCCchhhhhcC
Confidence            478889999987  2 35889999999999999999999998654221      1    111111111 1  11112234


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .       .+..++..||+.||++||++.++++
T Consensus       251 ~-------~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          251 D-------DAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             H-------HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             H-------HHHHHHHHHcccChhhCcCHHHHhc
Confidence            4       3445556699999999999999986

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.50  E-value=6.4e-14  Score=89.72  Aligned_cols=91  Identities=19%  Similarity=0.267  Sum_probs=62.3

Q ss_pred             CCCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ...||..|+|||.+.  ...+ +.++||||+|++++++++|..||....        .    ..   ..  ....+...+
T Consensus       197 ~~~~~~~y~aPE~~~--~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--------~----~~---~~--~~~~~~~~~  257 (312)
T 2iwi_A          197 DFDGTRVYSPPEWIS--RHQYHALPATVWSLGILLYDMVCGDIPFERDQ--------E----IL---EA--ELHFPAHVS  257 (312)
T ss_dssp             CCCSCTTTSCHHHHH--HSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH--------H----HH---HT--CCCCCTTSC
T ss_pred             ccCCcccccCceeee--cCCCCCccchHHHHHHHHHHHHHCCCCCCChH--------H----Hh---hh--ccCCcccCC
Confidence            356899999999873  3344 458999999999999999999985321        0    11   10  111233344


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      ..       +..++..||+.||++||++.++++  .+...
T Consensus       258 ~~-------~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~  290 (312)
T 2iwi_A          258 PD-------CCALIRRCLAPKPSSRPSLEEILLDPWMQTP  290 (312)
T ss_dssp             HH-------HHHHHHHHTCSSTTTSCCHHHHHHSTTTCC-
T ss_pred             HH-------HHHHHHHHccCChhhCcCHHHHhcChhhcCc
Confidence            43       445556699999999999999997  44443

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.49  E-value=5.1e-14  Score=89.58  Aligned_cols=95  Identities=17%  Similarity=0.211  Sum_probs=62.3

Q ss_pred             CCccccccCcccccc----ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccc--c
Q 040499            4 ARGTVSYIAPEVFCR----NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKR--H   77 (133)
Q Consensus         4 ~~gt~~~~ape~~~~----~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   77 (133)
                      ..||..|+|||++..    ....++.++|+||+|++++++++|..|+.....      ........   ........  .
T Consensus       183 ~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~------~~~~~~~~---~~~~~~~~~~~  253 (298)
T 1phk_A          183 VCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ------MLMLRMIM---SGNYQFGSPEW  253 (298)
T ss_dssp             CCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHH---HTCCCCCTTTG
T ss_pred             ccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH------HHHHHHHh---cCCcccCcccc
Confidence            468999999998731    134678899999999999999999999865321      11111111   11111110  1


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+.       .+..++..||+.||.+||++.++++
T Consensus       254 ~~~~~-------~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          254 DDYSD-------TVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             GGSCH-------HHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cccCH-------HHHHHHHHHccCCcccCCCHHHHHh
Confidence            12233       4555666699999999999999985

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.49  E-value=2.1e-14  Score=92.76  Aligned_cols=45  Identities=22%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..||..|+|||.+.. ...++.++||||+|++++++++|..||...
T Consensus       184 ~~~t~~y~aPE~~~~-~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (331)
T 4aaa_A          184 EVATRWYRAPELLVG-DVKYGKAVDVWAIGCLVTEMFMGEPLFPGD  228 (331)
T ss_dssp             CCCCCTTCCHHHHTT-CTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CcCCccccCcccccC-CCCcchHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            468999999998832 236788999999999999999999998754

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.48  E-value=2.8e-14  Score=94.90  Aligned_cols=88  Identities=9%  Similarity=0.063  Sum_probs=59.6

Q ss_pred             CCCccccccCcccccc--------ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc
Q 040499            3 DARGTVSYIAPEVFCR--------NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL   74 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~--------~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (133)
                      +.+| ..|+|||++..        ....++.++||||+|++++++++|+.||........         .......    
T Consensus       267 ~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~---------~~~~~~~----  332 (413)
T 3dzo_A          267 SPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGG---------SEWIFRS----  332 (413)
T ss_dssp             CCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSC---------SGGGGSS----
T ss_pred             cCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhh---------HHHHHhh----
Confidence            4578 99999998721        233577899999999999999999999975432210         0011110    


Q ss_pred             cccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040499           75 KRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAV  113 (133)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~  113 (133)
                        ....++       .+..++..||+.||++||++.+++
T Consensus       333 --~~~~~~-------~~~~li~~~l~~dP~~Rpt~~~~l  362 (413)
T 3dzo_A          333 --CKNIPQ-------PVRALLEGFLRYPKEDRLLPLQAM  362 (413)
T ss_dssp             --CCCCCH-------HHHHHHHHHTCSSGGGSCCHHHHT
T ss_pred             --cccCCH-------HHHHHHHHHccCChhhCcCHHHHH
Confidence              112333       355556669999999999976664

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.48  E-value=3.7e-14  Score=90.91  Aligned_cols=101  Identities=12%  Similarity=0.065  Sum_probs=64.4

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhh----------------
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLL----------------   68 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----------------   68 (133)
                      .||..|+|||.+.. ...++.++||||+|++++++++|..||......      ..........                
T Consensus       185 ~~~~~y~aPE~~~~-~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (320)
T 2i6l_A          185 LVTKWYRSPRLLLS-PNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHEL------EQMQLILESIPVVHEEDRQELLSVIP  257 (320)
T ss_dssp             GSCCTTCCHHHHHC-TTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHHHSCCCCHHHHHHHHTTSC
T ss_pred             cccccccCcHHhcC-cccCCchhhhHhHHHHHHHHHhCCCCCCCCCHH------HHHHHHHHhcCCCchhhhhhhhhcCc
Confidence            46888999998732 357889999999999999999999998754321      0000010000                


Q ss_pred             -------cCCcc--ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           69 -------EPGED--LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        69 -------~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                             .....  .......+       ..+..++..||+.||++||++.++++  .+...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  312 (320)
T 2i6l_A          258 VYIRNDMTEPHKPLTQLLPGIS-------REAVDFLEQILTFSPMDRLTAEEALSHPYMSIY  312 (320)
T ss_dssp             HHHHHHTTSCCCCHHHHSTTCC-------HHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTT
T ss_pred             ccccccccCCCCChhHhcchhh-------HHHHHHHHHHcCCCccccCCHHHHhCCcccccc
Confidence                   00000  00011122       34566677799999999999999986  55543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.47  E-value=1.3e-14  Score=93.49  Aligned_cols=46  Identities=11%  Similarity=0.230  Sum_probs=38.3

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ...||..|+|||.+. ....++.++||||+|++++++++|..||...
T Consensus       189 ~~~~~~~y~aPE~~~-~~~~~~~~~DiwslG~il~~ll~g~~p~~~~  234 (330)
T 3nsz_A          189 VRVASRYFKGPELLV-DYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  234 (330)
T ss_dssp             SCCSCGGGCCHHHHT-TCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             cccccccccChhhhc-CCCcCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence            356899999999873 2256889999999999999999999998543

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.46  E-value=8e-14  Score=88.66  Aligned_cols=94  Identities=21%  Similarity=0.295  Sum_probs=54.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++.. ...++.++||||+|++++++++   |+...        ..... ....+.... ...+......
T Consensus       190 ~~~~~~y~aPE~~~~-~~~~~~~~Di~slG~il~~l~~---p~~~~--------~~~~~-~~~~~~~~~-~~~~~~~~~~  255 (303)
T 1zy4_A          190 AIGTAMYVATEVLDG-TGHYNEKIDMYSLGIIFFEMIY---PFSTG--------MERVN-ILKKLRSVS-IEFPPDFDDN  255 (303)
T ss_dssp             ----CTTSCHHHHTS-CSCCCTHHHHHHHHHHHHHHHS---CCSSH--------HHHHH-HHHHHHSTT-CCCCTTCCTT
T ss_pred             CCCcccccCcccccC-CCCCcchhhHHHHHHHHHHHHh---ccCCc--------hhHHH-HHHhccccc-cccCcccccc
Confidence            458899999999832 2368899999999999999997   33211        00011 111111111 1111111111


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                         ....+..++..||+.||++||++.++++
T Consensus       256 ---~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          256 ---KMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             ---TSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---chHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence               1123445556699999999999999986

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.46  E-value=3.1e-14  Score=93.12  Aligned_cols=95  Identities=9%  Similarity=-0.055  Sum_probs=63.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccC-CCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHG-LVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   81 (133)
                      ..+||..|+|||++  ....++.++||||+|++++++++|+.|+.......         +.   ...    .... ...
T Consensus       244 ~~~gt~~y~aPE~~--~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~---------~~---~~~----~~~~~~~~  305 (365)
T 3e7e_A          244 AKCETSGFQCVEML--SNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGE---------CK---PEG----LFRRLPHL  305 (365)
T ss_dssp             CSSCTTSCCCHHHH--TTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETTE---------EE---ECS----CCTTCSSH
T ss_pred             eecCCCCCCChHHh--cCCCCCccccHHHHHHHHHHHHhCCCccccCCCCc---------ee---ech----hccccCcH
Confidence            46799999999998  55678999999999999999999999985432211         00   000    0001 112


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCC-CCHHHHHHHHccCccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDR-SSMSKAVEMLEGGLEA  122 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~R-ps~~~v~~~l~~~~~~  122 (133)
                      +...       .++..|++.+|.+| +++.++...|++....
T Consensus       306 ~~~~-------~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~  340 (365)
T 3e7e_A          306 DMWN-------EFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ  340 (365)
T ss_dssp             HHHH-------HHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             HHHH-------HHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence            2222       33444889999999 5678887777766544

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.40  E-value=2.9e-13  Score=94.43  Aligned_cols=105  Identities=12%  Similarity=0.080  Sum_probs=59.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCC-----CCcchhhhHH----HHhhhcCCcc
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHT-----SSTEMYFPDW----FYKLLEPGED   73 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~-----~~~~~~~~~~----~~~~~~~~~~   73 (133)
                      ...||..|+|||.+  ....++.++||||+|++++++++|..||.......     ..........    ..........
T Consensus       182 ~~~gt~~Y~APE~l--~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~  259 (676)
T 3qa8_A          182 EFVGTLQYLAPELL--EQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSV  259 (676)
T ss_dssp             CCCSCCTTCSSCSS--CCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSS
T ss_pred             cccCCcccCChHHh--ccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccc
Confidence            35789999999998  56788999999999999999999999986531100     0000000000    0000000001


Q ss_pred             ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHH
Q 040499           74 LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKA  112 (133)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v  112 (133)
                      ...+......   ....+..++..||+.||++||++.++
T Consensus       260 lp~p~~l~~~---ls~~L~dLI~~mL~~DP~kRPTa~el  295 (676)
T 3qa8_A          260 LPTPNHLSGI---LAGKLERWLQCMLMWHQRQRGTDPQN  295 (676)
T ss_dssp             SCCSCCCCGG---GHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred             cCCchhhchh---hhHHHHHHHHHHccCCHhhCcCHHHH
Confidence            1111112222   23445667777999999999999773

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.31  E-value=1.6e-12  Score=82.96  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---ccccCCCChhHHHHHHHHHHhhh
Q 040499           20 FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---LKRHGLVTEEEEVIVRKMIIVRL   96 (133)
Q Consensus        20 ~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~   96 (133)
                      ...++.++||||+|++++++++|..||...........      ..........   .......+.       .+..++.
T Consensus       172 ~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~  238 (299)
T 3m2w_A          172 GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG------MKTRIRMGQYEFPNPEWSEVSE-------EVKMLIR  238 (299)
T ss_dssp             TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CC------SCCSSCTTCCSSCHHHHTTSCH-------HHHHHHH
T ss_pred             cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHH------HHHHHhhccccCCchhcccCCH-------HHHHHHH
Confidence            45688899999999999999999999865432210000      0000000000   000122333       4555566


Q ss_pred             hhccCCCCCCCCHHHHHH--HHccCcc
Q 040499           97 WCIQTNPSDRSSMSKAVE--MLEGGLE  121 (133)
Q Consensus        97 ~cl~~~p~~Rps~~~v~~--~l~~~~~  121 (133)
                      .||+.||.+||++.++++  .+.+...
T Consensus       239 ~~l~~dP~~Rps~~e~l~hp~~~~~~~  265 (299)
T 3m2w_A          239 NLLKTEPTQRMTITEFMNHPWIMQSTK  265 (299)
T ss_dssp             HHTCSSTTTSCCHHHHHTSHHHHTGGG
T ss_pred             HHcccChhhCCCHHHHhcChhhccccc
Confidence            699999999999999986  5555443

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.26  E-value=5.5e-12  Score=80.12  Aligned_cols=88  Identities=11%  Similarity=0.065  Sum_probs=55.7

Q ss_pred             ccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc--ccccCCCChhHHHHHHHHHHhhhhhc
Q 040499           22 GISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED--LKRHGLVTEEEEVIVRKMIIVRLWCI   99 (133)
Q Consensus        22 ~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~cl   99 (133)
                      .++.++||||+|++++++++|+.||...........      ..........  .......+..       +..++..||
T Consensus       178 ~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-------l~~li~~~l  244 (286)
T 3uqc_A          178 DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAP------AERDTAGQPIEPADIDRDIPFQ-------ISAVAARSV  244 (286)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEE------CCBCTTSCBCCHHHHCTTSCHH-------HHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHH------HHHHhccCCCChhhcccCCCHH-------HHHHHHHHc
Confidence            467899999999999999999999986543221000      0000011100  0112233443       445555699


Q ss_pred             cCCCCCCCCHHHHHHHHccCccCC
Q 040499          100 QTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus       100 ~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      +.||++| |+.++++.|++.....
T Consensus       245 ~~dP~~R-s~~el~~~L~~~~~~~  267 (286)
T 3uqc_A          245 QGDGGIR-SASTLLNLMQQATAVA  267 (286)
T ss_dssp             CTTSSCC-CHHHHHHHHHHHHC--
T ss_pred             ccCCccC-CHHHHHHHHHHHhccC
Confidence            9999999 9999999998876553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.24  E-value=3.5e-12  Score=89.58  Aligned_cols=90  Identities=18%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||+.|+|||++.  . .++.++||||+|+++++++++..++........                      +.  ..
T Consensus       236 ~~~gt~~y~aPE~~~--~-~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~----------------------~~--~~  288 (681)
T 2pzi_A          236 YLYGTPGFQAPEIVR--T-GPTVATDIYTVGRTLAALTLDLPTRNGRYVDGL----------------------PE--DD  288 (681)
T ss_dssp             CCCCCTTTSCTTHHH--H-CSCHHHHHHHHHHHHHHHHSCCCEETTEECSSC----------------------CT--TC
T ss_pred             ccCCCccccCHHHHc--C-CCCCceehhhhHHHHHHHHhCCCCCcccccccc----------------------cc--cc
Confidence            456999999999883  2 348899999999999999998777653211100                      00  00


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCC-HHHHHHHHccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSS-MSKAVEMLEGG  119 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps-~~~v~~~l~~~  119 (133)
                      ........+..++..||+.||++||+ ++++...|.+.
T Consensus       289 ~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  326 (681)
T 2pzi_A          289 PVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGV  326 (681)
T ss_dssp             HHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHH
Confidence            01111234566777799999999995 55565555543

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=98.52  E-value=1.4e-07  Score=61.02  Aligned_cols=91  Identities=13%  Similarity=0.040  Sum_probs=52.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHH-HHHHHccCCCCCCCCCCCCCcchhhhHHHH-hhhcCCccccccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMT-VLELVGVRNNTASGVTHTSSTEMYFPDWFY-KLLEPGEDLKRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~-~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   81 (133)
                      .+||..|+|||++.  +.. +.++||||++++ ..++..+..|+...         ....... .........  .....
T Consensus       237 ~~gt~~y~aPE~~~--g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~---------~~~~~~~~~~~~~~~~~--~~~~~  302 (336)
T 2vuw_A          237 VVFCDVSMDEDLFT--GDG-DYQFDIYRLMKKENNNRWGEYHPYSNV---------LWLHYLTDKMLKQMTFK--TKCNT  302 (336)
T ss_dssp             EECCCCTTCSGGGC--CCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH---------HHHHHHHHHHHHTCCCS--SCCCS
T ss_pred             EEEeecccChhhhc--CCC-ccceehhhhhCCCCcccccccCCCcch---------hhhhHHHHhhhhhhccC--cccch
Confidence            36899999999983  333 789999998776 55566676665310         0000011 111110000  11112


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAV  113 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~  113 (133)
                      .........+..|+..||+.|     |+.+++
T Consensus       303 ~~~~~~s~~~~dli~~~L~~d-----sa~e~l  329 (336)
T 2vuw_A          303 PAMKQIKRKIQEFHRTMLNFS-----SATDLL  329 (336)
T ss_dssp             HHHHHHHHHHHHHHHHGGGSS-----SHHHHH
T ss_pred             hhhhhcCHHHHHHHHHHhccC-----CHHHHH
Confidence            233345556777888899976     888887

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=95.64  E-value=0.00016  Score=50.25  Aligned_cols=36  Identities=11%  Similarity=0.003  Sum_probs=14.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHc
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG   41 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~   41 (133)
                      +.+||+.|++||++.   +.+...+|+|+.|++.+++.+
T Consensus       398 t~vGTp~YmAPE~l~---g~~~~~~d~~s~g~~~~~l~~  433 (569)
T 4azs_A          398 NLVQSFFVFVNELFA---ENKSWNGFWRSAPVHPFNLPQ  433 (569)
T ss_dssp             HHHHHHHHHHHHHC--------------------CCCCT
T ss_pred             CceechhhccHHHhC---CCCCCcccccccccchhhhcc
Confidence            357999999999982   456778999999988766543

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=95.13  E-value=0.0012  Score=45.60  Aligned_cols=45  Identities=16%  Similarity=0.101  Sum_probs=35.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTA   47 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~   47 (133)
                      +++||..|+|||++......|+..+|+|+...-..+.+..+.+|.
T Consensus       495 ~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~  539 (540)
T 3en9_A          495 AVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV  539 (540)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred             hhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence            356999999999984333568888999999888888777766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	6e-12
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	7e-12
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-11
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-10
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-10
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-10
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	3e-10
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-10
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	6e-10
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	8e-10
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-09
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	3e-09
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-09
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-09
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	6e-09
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-09
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	8e-09
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	8e-09
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-08
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-08
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	2e-08
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-08
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	5e-08
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	8e-08
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-07
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	7e-07
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-06
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-06
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-06
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-06
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	7e-06
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-04
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	0.001
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	0.001
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	0.001
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	0.002

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 6e-12
 Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 16/125 (12%)

Query: 5   RGTVSYIAPEVF-CRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW 63
            G++ ++APEV   ++    S +SDVY FG+ + EL+       +G      + +   D 
Sbjct: 167 SGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELM-------TG--QLPYSNINNRDQ 217

Query: 64  FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL 123
              ++  G        V       +++++     C++    +R    + +  +E    +L
Sbjct: 218 IIFMVGRGYLSPDLSKVRSNCPKAMKRLM---AECLKKKRDERPLFPQILASIELLARSL 274

Query: 124 QVPPK 128
              PK
Sbjct: 275 ---PK 276

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 7e-12
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  V + +PEVF  +F   S KSDV+ FG+ + E+                 E       
Sbjct: 163 KFPVKWASPEVF--SFSRYSSKSDVWSFGVLMWEVFSEG---------KIPYENRSNSEV 211

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA 122
            + +  G  L +  L +      V +++     C +  P DR + S+ +  L    E+
Sbjct: 212 VEDISTGFRLYKPRLASTH----VYQIM---NHCWKERPEDRPAFSRLLRQLAEIAES 262

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (139), Expect = 1e-11
 Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 12/122 (9%)

Query: 6   GTVSYIAPEVFCRNF----GGISHKSDVYGFGMTVLELV------GVRNNTASGVTHTSS 55
           GT  Y+APEV   +          ++D+Y  G+   E+       G+  +          
Sbjct: 174 GTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP 233

Query: 56  TEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEM 115
           ++    +    + E              E +  R M  +   C   N + R +  +  + 
Sbjct: 234 SDPSVEEMRKVVCEQKLRPNIPNRWQSCEAL--RVMAKIMRECWYANGAARLTALRIKKT 291

Query: 116 LE 117
           L 
Sbjct: 292 LS 293

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 18/113 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  V + APE         S KSDV+ FG+ + E          G+              
Sbjct: 171 KWPVKWYAPECINY--YKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK---------GSEV 219

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
             +LE GE +        E    +  ++     C   +  +R   +     L 
Sbjct: 220 TAMLEKGERMGCPAGCPRE----MYDLM---NLCWTYDVENRPGFAAVELRLR 265

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 2e-10
 Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 18/120 (15%)

Query: 4   ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW 63
           A+  V ++A E         + KSDV+ FG+ + EL+         V           D 
Sbjct: 194 AKLPVKWMALESLQT--QKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--------DI 243

Query: 64  FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL 123
              LL+    L+         EV+        L C       R S S+ V  +       
Sbjct: 244 TVYLLQGRRLLQPEYCPDPLYEVM--------LKCWHPKAEMRPSFSELVSRISAIFSTF 295

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (130), Expect = 2e-10
 Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 25/126 (19%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  + + APE    ++   +  SDV+ FG+ + E+                  M + +  
Sbjct: 174 KIPIRWTAPEAI--SYRKFTSASDVWSFGIVMWEV------------------MTYGERP 213

Query: 65  YKLLEPGEDLK--RHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA 122
           Y  L   E +K    G            +  + + C Q   + R   +  V +L+   + 
Sbjct: 214 YWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILD---KL 270

Query: 123 LQVPPK 128
           ++ P  
Sbjct: 271 IRAPDS 276

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (130), Expect = 3e-10
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 18/125 (14%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  + + APE      G  + KSDV+ FG+ + EL         G+              
Sbjct: 175 KFPIKWTAPEAALY--GRFTIKSDVWSFGILLTELTTKGRVPYPGMV---------NREV 223

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ 124
              +E G  +       E     +  ++     C +  P +R +       LE    + +
Sbjct: 224 LDQVERGYRMPCPPECPES----LHDLM---CQCWRKEPEERPTFEYLQAFLEDYFTSTE 276

Query: 125 VPPKP 129
              +P
Sbjct: 277 PQYQP 281

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 3e-10
 Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 18/113 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  V +  PEV        S KSD++ FG+ + E+  +        T             
Sbjct: 162 KFPVRWSPPEVLMY--SKFSSKSDIWAFGVLMWEIYSLGKMPYERFT---------NSET 210

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
            + +  G  L R  L +E+    V  ++     C      +R +    +  + 
Sbjct: 211 AEHIAQGLRLYRPHLASEK----VYTIM---YSCWHEKADERPTFKILLSNIL 256

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 6e-10
 Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 18/114 (15%)

Query: 4   ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW 63
           A+  + + APE    N+G  + KSDV+ FG+ + E+V        G+T            
Sbjct: 170 AKFPIKWTAPEAI--NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT---------NPE 218

Query: 64  FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
             + LE G  + R     EE    + +++     C +  P DR +      +LE
Sbjct: 219 VIQNLERGYRMVRPDNCPEE----LYQLM---RLCWKERPEDRPTFDYLRSVLE 265

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 8e-10
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 18/114 (15%)

Query: 4   ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW 63
            +  V + APE         S KSDV+ FG+ + E+          +             
Sbjct: 160 GKLPVKWTAPEALRE--KKFSTKSDVWSFGILLWEIYSFGRVPYPRIP---------LKD 208

Query: 64  FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
               +E G  +             V +++     C   + + R S  +  E LE
Sbjct: 209 VVPRVEKGYKMDAPDGCPPA----VYEVM---KNCWHLDAAMRPSFLQLREQLE 255

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 1e-09
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 18/117 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           R  V ++A E    N+   +  SDV+ +G+ + E+V +      G+T             
Sbjct: 187 RLPVRWMAIESL--NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT---------CAEL 235

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE 121
           Y+ L  G  L++     +E    V  ++     C +  P +R S ++ +  L   LE
Sbjct: 236 YEKLPQGYRLEKPLNCDDE----VYDLM---RQCWREKPYERPSFAQILVSLNRMLE 285

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 17/115 (14%)

Query: 4   ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW 63
           AR  V ++APE         + +SDV+ +G+ + EL  + ++   G        M     
Sbjct: 207 ARLPVKWMAPESIFN--CVYTFESDVWSYGIFLWELFSLGSSPYPG--------MPVDSK 256

Query: 64  FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEG 118
           FYK+++ G  +          E    +M  +   C   +P  R +  + V+++E 
Sbjct: 257 FYKMIKEGFRM-------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEK 304

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 4e-09
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 17/120 (14%)

Query: 3   DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPD 62
           DAR  + ++APE         + +SDV+ FG+ + E+  +  +   GV           +
Sbjct: 195 DARLPLKWMAPETIFD--RVYTIQSDVWSFGVLLWEIFSLGASPYPGVK--------IDE 244

Query: 63  WFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA 122
            F + L+ G  ++     T E    + + +   L C    PS R + S+ VE L   L+A
Sbjct: 245 EFCRRLKEGTRMRAPDYTTPE----MYQTM---LDCWHGEPSQRPTFSELVEHLGNLLQA 297

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (120), Expect = 6e-09
 Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 21/122 (17%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  + + APE     +   +  SDV+ +G+ + E++         +T+         D  
Sbjct: 194 KIPIRWTAPEAI--QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTN--------QDVI 243

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ 124
             +                       +  + L C Q + + R    + V  L+   + ++
Sbjct: 244 NAI--------EQDYRLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLD---KMIR 292

Query: 125 VP 126
            P
Sbjct: 293 NP 294

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 6e-09
 Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 18/113 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  + ++A E         +H+SDV+ +G+TV EL+   +    G+              
Sbjct: 174 KVPIKWMALESILH--RIYTHQSDVWSYGVTVWELMTFGSKPYDGIP---------ASEI 222

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
             +LE GE L +  + T +    V  ++   + C   +   R    + +    
Sbjct: 223 SSILEKGERLPQPPICTID----VYMIM---VKCWMIDADSRPKFRELIIEFS 268

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 6e-09
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 18/112 (16%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
             V ++APE         +H+SDV+ FG+ + E+  +  +   GV           +  +
Sbjct: 199 LPVKWMAPEALFD--RIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP---------VEELF 247

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
           KLL+ G  + +    T E    +  M+     C    PS R +  + VE L+
Sbjct: 248 KLLKEGHRMDKPSNCTNE----LYMMM---RDCWHAVPSQRPTFKQLVEDLD 292

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (119), Expect = 8e-09
 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 18/118 (15%)

Query: 4   ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW 63
           A+  + + APE         S KSDV+ FG+ + E+     +   G+             
Sbjct: 176 AKFPIKWTAPESLAY--NKFSIKSDVWAFGVLLWEIATYGMSPYPGID---------LSQ 224

Query: 64  FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE 121
            Y+LLE    ++R     E+    V +++     C Q NPSDR S ++  +  E   +
Sbjct: 225 VYELLEKDYRMERPEGCPEK----VYELM---RACWQWNPSDRPSFAEIHQAFETMFQ 275

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 8e-09
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 18/113 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  + + APE    NF   S +SDV+ +G+T+ E +         +              
Sbjct: 173 KWPLKWYAPECI--NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK---------GPEV 221

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
              +E G+ ++       E    +  ++     C      DR       + + 
Sbjct: 222 MAFIEQGKRMECPPECPPE----LYALM---SDCWIYKWEDRPDFLTVEQRMR 267

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 1e-08
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 17/114 (14%)

Query: 4   ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW 63
           AR  V ++APE      G  + KSDV+ +G+ + E+  +  N   G+             
Sbjct: 226 ARLPVKWMAPESLFE--GIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV--------DAN 275

Query: 64  FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
           FYKL++ G  + +    TEE  +I++        C   +   R S       L 
Sbjct: 276 FYKLIQNGFKMDQPFYATEEIYIIMQS-------CWAFDSRKRPSFPNLTSFLG 322

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 2e-08
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 17/114 (14%)

Query: 4   ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDW 63
            +   ++ APE         SH SD + FG+T+ E+         G+             
Sbjct: 174 RKVPFAWCAPESL--KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG--------SQI 223

Query: 64  FYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
            +K+ + GE L R     ++    +  ++   + C    P DR +     + L 
Sbjct: 224 LHKIDKEGERLPRPEDCPQD----IYNVM---VQCWAHKPEDRPTFVALRDFLL 270

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
              + ++ PE    N    + +SDV+ +G+ + E+             +   + Y+    
Sbjct: 203 AIPIRWMPPESIFYN--RYTTESDVWAYGVVLWEIF------------SYGLQPYYGMAH 248

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE 121
            +++       R G +    E    ++  +   C    P+DR S      +L+   E
Sbjct: 249 EEVIY----YVRDGNILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCE 301

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 18/109 (16%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT  ++APE++           DVY FGM +LE+        +   +  S        + 
Sbjct: 175 GTPEFMAPEMYE---EKYDESVDVYAFGMCMLEMA-------TS-EYPYSECQNAAQIYR 223

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
           ++    +      +   E + I+         CI+ N  +R S+   + 
Sbjct: 224 RVTSGVKPASFDKVAIPEVKEIIEG-------CIRQNKDERYSIKDLLN 265

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 5e-08
 Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           +  + ++APE    NF   +  SDV+ FG+ + E++         +      +    +  
Sbjct: 170 KLPIKWMAPESI--NFRRFTSASDVWMFGVCMWEIL---------MHGVKPFQGVKNNDV 218

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE 121
              +E GE L            ++ K       C   +PS R   ++    L   LE
Sbjct: 219 IGRIENGERLPMPPNCPPTLYSLMTK-------CWAYDPSRRPRFTELKAQLSTILE 268

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.1 bits (111), Expect = 8e-08
 Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 12/112 (10%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT  Y +           S + D+   G  ++    + +    G+   +  + Y      
Sbjct: 175 GTARYASINTHLG--IEQSRRDDLESLGYVLMYFN-LGSLPWQGLKAATKRQKYERISEK 231

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE 117
           K+  P E L +      E    +         C      D+   S   ++  
Sbjct: 232 KMSTPIEVLCKG--YPSEFATYLNF-------CRSLRFDDKPDYSYLRQLFR 274

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 18/117 (15%)

Query: 5   RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
              V +++PE      G  +  SDV+ FG+ + E+  +      G++          +  
Sbjct: 196 LLPVRWMSPESL--KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS---------NEQV 244

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE 121
            + +  G  L +     +     + +++     C Q NP  R S  + +  ++  +E
Sbjct: 245 LRFVMEGGLLDKPDNCPDM----LFELM---RMCWQYNPKMRPSFLEIISSIKEEME 294

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.4 bits (104), Expect = 7e-07
 Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 12/122 (9%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT  Y++           S + D+   G   +  +   +    G+   ++ + Y      
Sbjct: 175 GTARYMSINTHLGR--EQSRRDDLEALGHVFMYFL-RGSLPWQGLKAATNKQKYERIGEK 231

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQV 125
           K   P  +L       EE    +                          +    LE L  
Sbjct: 232 KQSTPLRELCAG--FPEEFYKYMHY-------ARNLAFDATPDYDYLQGLFSKVLERLNT 282

Query: 126 PP 127
             
Sbjct: 283 TE 284

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 17/110 (15%)

Query: 6   GTVSYIAPEVF-CRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWF 64
           GT  ++APEV    + G    K DV+  G+T +EL   +              M      
Sbjct: 173 GTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERK---------PPLFNMNAMSAL 223

Query: 65  YKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
           Y + +      + G  +E     V         C+Q  P DR +    ++
Sbjct: 224 YHIAQNESPALQSGHWSEYFRNFVDS-------CLQKIPQDRPTSEVLLK 266

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 16/109 (14%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT+ Y+APE+  +     +   DV+  G+ +  ++       +G            + + 
Sbjct: 167 GTLPYVAPELL-KRREFHAEPVDVWSCGIVLTAML-------AGELPWDQPSDSCQE-YS 217

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
              E    L     +      ++ K        +  NPS R ++    +
Sbjct: 218 DWKEKKTYLNPWKKIDSAPLALLHK-------ILVENPSARITIPDIKK 259

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 28/135 (20%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELV------GVRNNTASGVTHTSSTEMY 59
           GT SY++PE         S +SD++  G++++E+          +     +      E  
Sbjct: 165 GTRSYMSPERL--QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGD 222

Query: 60  FPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVR--------------------LWCI 99
             +   +   PG  L  +G+ +     I   +  +                       C+
Sbjct: 223 AAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCL 282

Query: 100 QTNPSDRSSMSKAVE 114
             NP++R+ + + + 
Sbjct: 283 IKNPAERADLKQLMV 297

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 30/114 (26%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR-----NNTASGVTHTSSTEMYF 60
           GT+ Y+ PE+          K D++  G+   E +  +     N         S  E  F
Sbjct: 166 GTLDYLPPEMIEG--RMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTF 223

Query: 61  PDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
           PD+                VTE    ++ +        ++ NPS R  + + +E
Sbjct: 224 PDF----------------VTEGARDLISR-------LLKHNPSQRPMLREVLE 254

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 7e-06
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 19/108 (17%)

Query: 7   TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYK 66
           T  Y++PE    N    + KSD++  G  + EL  +             T     +   K
Sbjct: 177 TPYYMSPEQM--NRMSYNEKSDIWSLGCLLYELCALM---------PPFTAFSQKELAGK 225

Query: 67  LLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
           + E       +    E  E+I           +      R S+ + +E
Sbjct: 226 IREGKFRRIPYRYSDELNEII--------TRMLNLKDYHRPSVEEILE 265

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 17/109 (15%), Positives = 37/109 (33%), Gaps = 17/109 (15%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT  ++APEV  R       K D++  G+  +E++        G       E      + 
Sbjct: 178 GTPYWMAPEVVTR--KAYGPKVDIWSLGIMAIEMI-------EG-EPPYLNENPLRALYL 227

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
                  +L+    ++      + +       C+  +   R S  + ++
Sbjct: 228 IATNGTPELQNPEKLSAIFRDFLNR-------CLDMDVEKRGSAKELLQ 269

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 26/114 (22%)

Query: 5   RGTVSYIAPEVF---CRNFGGISHKSDVYGFGMTVLELVG------------VRNNTASG 49
            GT  ++APEV            +K+DV+  G+T++E+              V    A  
Sbjct: 171 IGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKS 230

Query: 50  VTHTSSTEMYFPDWFYKLLE----------PG-EDLKRHGLVTEEEEVIVRKMI 92
              T +    +   F   L+               L +H  VT +    +R++I
Sbjct: 231 EPPTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVDSNKPIRELI 284

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 13/109 (11%), Positives = 43/109 (39%), Gaps = 16/109 (14%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY 65
           GT  ++APE+   N+  +  ++D++  G+    L+     + +      + +    +   
Sbjct: 178 GTPEFVAPEIV--NYEPLGLEADMWSIGVITYILL-----SGASPFLGDTKQETLANVSA 230

Query: 66  KLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
              E  ++   +   +   +  +R+        +  +P  R ++  +++
Sbjct: 231 VNYEFEDEYFSN--TSALAKDFIRR-------LLVKDPKKRMTIQDSLQ 270

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 12/108 (11%)

Query: 7   TVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYK 66
           T  Y+APEV            D++  G+ +  L+       S      S  M       +
Sbjct: 176 TPYYVAPEVLGP--EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQ 233

Query: 67  LLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE 114
              P  +      V+EE ++++R         ++T P+ R ++++ + 
Sbjct: 234 YEFPNPEWSE---VSEEVKMLIRN-------LLKTEPTQRMTITEFMN 271

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 25/125 (20%)

Query: 6   GTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG----------------VRNNTASG 49
            T+ Y APEV  +     +   D++  G    E+                  + +     
Sbjct: 177 VTLWYRAPEVLLQ--SSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLP 234

Query: 50  VTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSM 109
                  ++  P   +         K    + E  + ++ K       C+  NP+ R S 
Sbjct: 235 GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLK-------CLTFNPAKRISA 287

Query: 110 SKAVE 114
             A+ 
Sbjct: 288 YSALS 292

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.87
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.86
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.86
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.86
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.86
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.86
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.85
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.85
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.85
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.85
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.85
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.85
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.84
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.84
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.84
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.84
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.83
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.83
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.82
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.82
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.82
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.81
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.81
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.81
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.81
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.8
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.8
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.8
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.79
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.79
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.79
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.79
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.78
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.78
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.77
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.76
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.75
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.75
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.75
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.75
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.74
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.73
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.73
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.72
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.72
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.68
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.66
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.66
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.66
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.64
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.63
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.63
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.62
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.62
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.59
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.57
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.56
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.48
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.44
d1kq8a_	75	HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norv	81.15

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.6e-23  Score=127.74  Aligned_cols=110  Identities=18%  Similarity=0.188  Sum_probs=73.8

Q ss_pred             CCCccccccCccccccc-cCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRN-FGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~-~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +..||+.|+|||++... ...|+.++||||||+++||+++|+.||.+.....     ..................+...+
T Consensus       165 ~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~  239 (276)
T d1uwha_         165 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRD-----QIIFMVGRGYLSPDLSKVRSNCP  239 (276)
T ss_dssp             -CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-----HHHHHHHHTSCCCCGGGSCTTCC
T ss_pred             ccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHH-----HHHHHHhcCCCCCcchhccccch
Confidence            46799999999998422 2358899999999999999999999997543211     11111111111111112223334


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQ  124 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~  124 (133)
                      +       .+..++..||+.||++|||+++|++.|+.+.++.+
T Consensus       240 ~-------~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~~P  275 (276)
T d1uwha_         240 K-------AMKRLMAECLKKKRDERPLFPQILASIELLARSLP  275 (276)
T ss_dssp             H-------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             H-------HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHcCC
Confidence            3       45556666999999999999999999998876643

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4.7e-23  Score=130.27  Aligned_cols=101  Identities=16%  Similarity=0.242  Sum_probs=72.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||+.|+|||++  ....++.++||||||+++||+++ |..||......      .    +...+..+..+..+...+.
T Consensus       193 ~~~t~~y~aPE~~--~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  260 (299)
T d1jpaa_         193 GKIPIRWTAPEAI--QYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQ------D----VINAIEQDYRLPPPMDCPS  260 (299)
T ss_dssp             ---CGGGSCHHHH--HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH------H----HHHHHHTTCCCCCCTTCCH
T ss_pred             ccCCccccCHHHH--hcCCCCcccccccchHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCccchH
Confidence            3578899999998  56789999999999999999998 78888654221      1    2222333333333444444


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                             .+..++..||+.||++||++.+|++.|+++.+..
T Consensus       261 -------~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~~p  294 (299)
T d1jpaa_         261 -------ALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIRNP  294 (299)
T ss_dssp             -------HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             -------HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcCh
Confidence                   3455666699999999999999999999887653

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-22  Score=127.30  Aligned_cols=97  Identities=23%  Similarity=0.260  Sum_probs=71.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||+.|+|||++  ....++.++||||||+++||+++ |..||.+....      .    +...+..+..+..+...+.
T Consensus       170 ~~gt~~y~APE~l--~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~------~----~~~~i~~~~~~~~p~~~~~  237 (277)
T d1xbba_         170 GKWPVKWYAPECI--NYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS------E----VTAMLEKGERMGCPAGCPR  237 (277)
T ss_dssp             -CCCGGGCCHHHH--HHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH------H----HHHHHHTTCCCCCCTTCCH
T ss_pred             cCCCceecCchhh--cCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCcccCH
Confidence            4689999999998  56789999999999999999997 78898754221      1    2333334444445555555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      .       +..++..||+.||++|||+++|+..|+..
T Consensus       238 ~-------~~~li~~cl~~dp~~RPs~~~i~~~L~~~  267 (277)
T d1xbba_         238 E-------MYDLMNLCWTYDVENRPGFAAVELRLRNY  267 (277)
T ss_dssp             H-------HHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHcCCCHhHCcCHHHHHHHhhCH
Confidence            3       44566669999999999999999888754

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-22  Score=127.37  Aligned_cols=99  Identities=18%  Similarity=0.257  Sum_probs=74.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ...||+.|+|||++  ....++.++||||||+++||+++ |..||......      .    +...+..+..+..|...+
T Consensus       171 ~~~gt~~y~aPE~~--~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~------~----~~~~i~~~~~~~~p~~~~  238 (285)
T d1u59a_         171 AGKWPLKWYAPECI--NFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP------E----VMAFIEQGKRMECPPECP  238 (285)
T ss_dssp             SSCCCGGGCCHHHH--HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH------H----HHHHHHTTCCCCCCTTCC
T ss_pred             ccccCccccChHHH--hCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHH------H----HHHHHHcCCCCCCCCcCC
Confidence            34688999999998  56789999999999999999998 89998754321      1    233334444445555555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                      +.       +..++..||+.||++||++.+|++.|+...
T Consensus       239 ~~-------l~~li~~cl~~~p~~RPs~~~i~~~L~~~~  270 (285)
T d1u59a_         239 PE-------LYALMSDCWIYKWEDRPDFLTVEQRMRACY  270 (285)
T ss_dssp             HH-------HHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            53       445566699999999999999998887554

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.3e-23  Score=128.36  Aligned_cols=100  Identities=24%  Similarity=0.366  Sum_probs=69.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++||||||+++||++++..|+.....     ...    ....+..+.....|...++ 
T Consensus       162 ~~gt~~y~aPE~l--~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~-----~~~----~~~~i~~~~~~~~p~~~~~-  229 (263)
T d1sm2a_         162 TKFPVKWASPEVF--SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS-----NSE----VVEDISTGFRLYKPRLAST-  229 (263)
T ss_dssp             ---CTTSCCHHHH--TTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC-----HHH----HHHHHHHTCCCCCCTTSCH-
T ss_pred             eecCcccCChHHh--cCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC-----HHH----HHHHHHhcCCCCCccccCH-
Confidence            4689999999998  567899999999999999999996554432211     111    2222222333334444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                            .+..++..||+.||++|||+++|++.|+++.+
T Consensus       230 ------~l~~li~~cl~~~p~~Rps~~~il~~L~~i~e  261 (263)
T d1sm2a_         230 ------HVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE  261 (263)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence                  45566667999999999999999999988754

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-22  Score=127.23  Aligned_cols=102  Identities=18%  Similarity=0.296  Sum_probs=73.1

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ..+.++.++||||||+++||++++..|+......     ..    +...+..+..+..+...+. 
T Consensus       173 ~~gt~~Y~APE~l--~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~-----~~----~~~~i~~~~~~~~~~~~~~-  240 (283)
T d1mqba_         173 GKIPIRWTAPEAI--SYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN-----HE----VMKAINDGFRLPTPMDCPS-  240 (283)
T ss_dssp             -CCCGGGSCHHHH--HSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HH----HHHHHHTTCCCCCCTTCBH-
T ss_pred             CCCCccccCHHHH--ccCCCCCcccccccHHHHHHHHhCCCCccccCCH-----HH----HHHHHhccCCCCCchhhHH-
Confidence            4588999999998  5678999999999999999999966655432211     11    2333333434344444444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                            .+..++..||+.||++||++.+|++.|+++.+..
T Consensus       241 ------~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~p  274 (283)
T d1mqba_         241 ------AIYQLMMQCWQQERARRPKFADIVSILDKLIRAP  274 (283)
T ss_dssp             ------HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred             ------HHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhCc
Confidence                  4556667799999999999999999998877653

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-22  Score=129.34  Aligned_cols=97  Identities=28%  Similarity=0.391  Sum_probs=72.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +..||+.|+|||++  ....++.++|||||||++||+++ |..||.+.....         .+...+..+..+..+...+
T Consensus       225 ~~~gt~~y~aPE~l--~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~---------~~~~~~~~~~~~~~p~~~~  293 (325)
T d1rjba_         225 NARLPVKWMAPESL--FEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDA---------NFYKLIQNGFKMDQPFYAT  293 (325)
T ss_dssp             TEEECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSH---------HHHHHHHTTCCCCCCTTCC
T ss_pred             cccCCCccCChHHH--cCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHH---------HHHHHHhcCCCCCCCCcCC
Confidence            34579999999998  56789999999999999999997 788987543321         1223334444444555555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLE  117 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~  117 (133)
                      +.       +..|+..||+.||++|||+++|++.|.
T Consensus       294 ~~-------l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         294 EE-------IYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HH-------HHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            54       444555599999999999999999885

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-22  Score=124.50  Aligned_cols=98  Identities=18%  Similarity=0.289  Sum_probs=72.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ...||..|+|||.+  ....++.++||||||+++||+++ |+.||.......          +...+..+.....|...+
T Consensus       160 ~~~~t~~y~aPE~~--~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~----------~~~~i~~~~~~~~p~~~~  227 (258)
T d1k2pa_         160 GSKFPVRWSPPEVL--MYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSE----------TAEHIAQGLRLYRPHLAS  227 (258)
T ss_dssp             CSCCCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHH----------HHHHHHTTCCCCCCTTCC
T ss_pred             ccCCCCCcCCcHHh--cCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHH----------HHHHHHhCCCCCCccccc
Confidence            35689999999998  55688999999999999999998 788886542211          233333444444555555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      ..       +..++..||+.||++|||+++|++.|.++
T Consensus       228 ~~-------l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         228 EK-------VYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             HH-------HHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             HH-------HHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence            53       44555569999999999999999988653

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-22  Score=125.74  Aligned_cols=99  Identities=22%  Similarity=0.294  Sum_probs=72.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||+.|+|||++  ....++.++||||||+++||+++ |..|+.......          ....+..+..+..+...++
T Consensus       169 ~~gt~~y~apE~l--~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~----------~~~~i~~~~~~~~~~~~~~  236 (273)
T d1mp8a_         169 GKLPIKWMAPESI--NFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND----------VIGRIENGERLPMPPNCPP  236 (273)
T ss_dssp             --CCGGGCCHHHH--HHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG----------HHHHHHTTCCCCCCTTCCH
T ss_pred             eecCcccchhhHh--ccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHH----------HHHHHHcCCCCCCCCCCCH
Confidence            4688999999998  56789999999999999999987 788886543321          2333333444444555555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      .       +..++..||+.||++|||+.+|++.|+++.+
T Consensus       237 ~-------~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~  268 (273)
T d1mp8a_         237 T-------LYSLMTKCWAYDPSRRPRFTELKAQLSTILE  268 (273)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            4       4445556999999999999999999987654

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-22  Score=125.97  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....|+.++||||+|+++|++++|..||......      .    +...+..+.....+...++
T Consensus       173 ~~~gt~~Y~APE~l--~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~s~  240 (269)
T d2java1         173 AFVGTPYYMSPEQM--NRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK------E----LAGKIREGKFRRIPYRYSD  240 (269)
T ss_dssp             ---CCCSCCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH------H----HHHHHHHTCCCCCCTTSCH
T ss_pred             cCCCCcccCCHHHH--cCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHH------H----HHHHHHcCCCCCCCcccCH
Confidence            46799999999998  5678999999999999999999999998653221      1    2222222333334455555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...       .++..||+.||++|||+.+|++
T Consensus       241 ~l~-------~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         241 ELN-------EIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             HHH-------HHHHHHTCSSGGGSCCHHHHHT
T ss_pred             HHH-------HHHHHHcCCChhHCcCHHHHHh
Confidence            444       4445599999999999999875

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-22  Score=126.13  Aligned_cols=101  Identities=28%  Similarity=0.412  Sum_probs=72.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +..||+.|+|||++  ..+.++.++||||||+++||++++..|+......     .    .....+..+..+..+...+.
T Consensus       169 ~~~gt~~y~APE~~--~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~-----~----~~~~~i~~~~~~~~p~~~~~  237 (272)
T d1qpca_         169 GAKFPIKWTAPEAI--NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN-----P----EVIQNLERGYRMVRPDNCPE  237 (272)
T ss_dssp             TCCCCTTTSCHHHH--HHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----H----HHHHHHHTTCCCCCCTTCCH
T ss_pred             ccCCcccccChHHH--hCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCH-----H----HHHHHHHhcCCCCCcccChH
Confidence            35689999999998  5578999999999999999999976654432211     1    12333334444444555555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      .       +..++..||+.||++|||+++|++.|++..+
T Consensus       238 ~-------l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         238 E-------LYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence            3       4555666999999999999999999987654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=3.1e-22  Score=126.61  Aligned_cols=99  Identities=15%  Similarity=0.232  Sum_probs=72.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccC-CCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR-NNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +..||+.|+|||.+  ....++.++||||||+++||++++. +|+......      .    ....+..+..+..+...+
T Consensus       201 ~~~~~~~y~aPE~~--~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~------e----~~~~v~~~~~~~~p~~~~  268 (301)
T d1lufa_         201 NDAIPIRWMPPESI--FYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHE------E----VIYYVRDGNILACPENCP  268 (301)
T ss_dssp             -CCBCGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHH------H----HHHHHHTTCCCCCCTTCC
T ss_pred             CCCcCcCcCCHHHH--ccCCCChhhhhccchhhHHHHHccCCCCCCCCCHH------H----HHHHHHcCCCCCCCccch
Confidence            35688999999998  5678999999999999999999885 466543221      1    223334444444455555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                      .       .+..++..||+.||++|||+.+|++.|+++.
T Consensus       269 ~-------~~~~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         269 L-------ELYNLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             H-------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             H-------HHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            5       3455666699999999999999999998875

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.4e-22  Score=127.03  Aligned_cols=102  Identities=28%  Similarity=0.391  Sum_probs=74.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccC-CCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR-NNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      +.+||+.|+|||++  ....++.++||||+|+++||++++. .||......         ......+..+..+..+...+
T Consensus       195 ~~~gt~~y~APE~l--~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~  263 (299)
T d1ywna1         195 DARLPLKWMAPETI--FDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKID---------EEFCRRLKEGTRMRAPDYTT  263 (299)
T ss_dssp             SCCCGGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCS---------HHHHHHHHHTCCCCCCTTCC
T ss_pred             ceeeCccccchhHh--hcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHH---------HHHHHHHhcCCCCCCCccCC
Confidence            45799999999998  5678899999999999999999865 466543221         11233333344444455555


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      +.       +..++..||+.||++|||+.+|++.|++++++
T Consensus       264 ~~-------l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq~  297 (299)
T d1ywna1         264 PE-------MYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  297 (299)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence            53       44556669999999999999999999987654

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.3e-22  Score=123.49  Aligned_cols=107  Identities=21%  Similarity=0.295  Sum_probs=75.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||++  ....++.++||||||+++||+++++.|+......     ..    ....+..+.....+...++.
T Consensus       174 ~~gt~~y~aPE~~--~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~-----~~----~~~~i~~~~~~~~~~~~~~~  242 (285)
T d1fmka3         174 AKFPIKWTAPEAA--LYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN-----RE----VLDQVERGYRMPCPPECPES  242 (285)
T ss_dssp             --CCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HH----HHHHHHTTCCCCCCTTSCHH
T ss_pred             ccccccccChHHH--hCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCH-----HH----HHHHHHhcCCCCCCcccCHH
Confidence            5689999999998  5678899999999999999999976665433211     11    22223333333344545553


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCCCCCCC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEALQVPPK  128 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~~~~~~  128 (133)
                             +..++.+||+.||++||++++|+..|++..+....+-.
T Consensus       243 -------l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~p~~~  280 (285)
T d1fmka3         243 -------LHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQ  280 (285)
T ss_dssp             -------HHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCCC
T ss_pred             -------HHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCCCCCC
Confidence                   44556669999999999999999999998877653333

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5.6e-22  Score=123.18  Aligned_cols=99  Identities=22%  Similarity=0.210  Sum_probs=72.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||++  ....++.++||||||+++||+++ +..|+.......          +...+..+..+..+...++
T Consensus       160 ~~~~~~y~aPE~l--~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~----------~~~~i~~~~~~~~~~~~~~  227 (262)
T d1byga_         160 GKLPVKWTAPEAL--REKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD----------VVPRVEKGYKMDAPDGCPP  227 (262)
T ss_dssp             --CCTTTSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGG----------HHHHHTTTCCCCCCTTCCH
T ss_pred             ccccccCCChHHH--hCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHH----------HHHHHHcCCCCCCCccCCH
Confidence            4678899999998  45688999999999999999998 566665432221          3333444445555555555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      .       +.+++..||+.||++|||+.+|++.|+.+.+
T Consensus       228 ~-------~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         228 A-------VYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence            4       4455566999999999999999999987643

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.5e-22  Score=126.68  Aligned_cols=98  Identities=19%  Similarity=0.293  Sum_probs=70.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||++  ..+.++.++||||||+++||+++ |..||.......          +...+..+..+..+...+.
T Consensus       173 ~~gt~~y~APE~l--~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~----------~~~~i~~~~~~~~p~~~~~  240 (317)
T d1xkka_         173 GKVPIKWMALESI--LHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASE----------ISSILEKGERLPQPPICTI  240 (317)
T ss_dssp             --CCTTTSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGG----------HHHHHHHTCCCCCCTTBCH
T ss_pred             cccCccccChHHH--hcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHH----------HHHHHHcCCCCCCCcccCH
Confidence            4689999999998  55689999999999999999998 677876543221          2233333444444554555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                      .       +..++..||+.||.+|||+.+|+..|+++.
T Consensus       241 ~-------~~~li~~cl~~dP~~RPs~~eil~~l~~~~  271 (317)
T d1xkka_         241 D-------VYMIMVKCWMIDADSRPKFRELIIEFSKMA  271 (317)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHhCCCChhhCcCHHHHHHHHHHHH
Confidence            3       445556699999999999999998877653

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4e-22  Score=125.99  Aligned_cols=99  Identities=25%  Similarity=0.373  Sum_probs=74.8

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||+.|+|||.+  ..+.|+.++||||||+++||+++ |..||......          .....+..+..+..+...++
T Consensus       197 ~~~~~~y~aPE~l--~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~----------~~~~~i~~~~~~~~p~~~~~  264 (299)
T d1fgka_         197 GRLPVKWMAPEAL--FDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVE----------ELFKLLKEGHRMDKPSNCTN  264 (299)
T ss_dssp             SCCGGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH----------HHHHHHHTTCCCCCCSSCCH
T ss_pred             CCCChhhhhhhHh--cCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHH----------HHHHHHHcCCCCCCCccchH
Confidence            5688999999998  55789999999999999999998 67777543221          13334444555555555555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      .       +..++..||+.||++|||+.+|++.|+++.+
T Consensus       265 ~-------l~~li~~cl~~dP~~Rps~~eil~~L~~i~a  296 (299)
T d1fgka_         265 E-------LYMMMRDCWHAVPSQRPTFKQLVEDLDRIVA  296 (299)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHccCCHhHCcCHHHHHHHHHHHhh
Confidence            4       4455666999999999999999999988754

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3e-21  Score=122.54  Aligned_cols=101  Identities=23%  Similarity=0.274  Sum_probs=73.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      ..||..|+|||.+  ....++.++||||||+++||++++..|+.......     .    ....+..+..+..|...++ 
T Consensus       194 ~~gt~~y~aPE~~--~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~-----~----~~~~i~~g~~~~~p~~~~~-  261 (311)
T d1r0pa_         194 AKLPVKWMALESL--QTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF-----D----ITVYLLQGRRLLQPEYCPD-  261 (311)
T ss_dssp             SSCCGGGSCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTSCCSCC---------------CHHHHHTTCCCCCCTTCCH-
T ss_pred             ccccccccChHHH--hcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHH-----H----HHHHHHcCCCCCCcccCcH-
Confidence            4689999999998  55788999999999999999999877766432211     1    1222233334444554444 


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            .+..|+..||+.||++||++.+|++.|+++.+.
T Consensus       262 ------~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~  294 (311)
T d1r0pa_         262 ------PLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  294 (311)
T ss_dssp             ------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence                  355666779999999999999999999888665

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=2.2e-21  Score=121.96  Aligned_cols=100  Identities=27%  Similarity=0.406  Sum_probs=72.7

Q ss_pred             CccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChhH
Q 040499            5 RGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEEE   84 (133)
Q Consensus         5 ~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (133)
                      .||..|+|||++  ....++.++||||+|+++||++++..|+......         ......+..+..+..+...++. 
T Consensus       177 ~g~~~y~aPE~~--~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~---------~~~~~~i~~~~~~~~~~~~~~~-  244 (287)
T d1opja_         177 KFPIKWTAPESL--AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL---------SQVYELLEKDYRMERPEGCPEK-  244 (287)
T ss_dssp             EECGGGCCHHHH--HHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCH---------HHHHHHHHTTCCCCCCTTCCHH-
T ss_pred             cccccccChHHH--cCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchH---------HHHHHHHhcCCCCCCCccchHH-
Confidence            478899999998  5678999999999999999999977765432211         0122333334444445555554 


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           85 EVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        85 ~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                            +..++..||+.||++|||+.+|++.|+.+.+.
T Consensus       245 ------l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~~  276 (287)
T d1opja_         245 ------VYELMRACWQWNPSDRPSFAEIHQAFETMFQE  276 (287)
T ss_dssp             ------HHHHHHHHTCSSGGGSCCHHHHHHHHHHTTSS
T ss_pred             ------HHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHh
Confidence                  44555669999999999999999999887654

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.6e-21  Score=118.25  Aligned_cols=93  Identities=23%  Similarity=0.374  Sum_probs=65.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc-cccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE-DLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~   81 (133)
                      +.+||+.|+|||++  . +.++.++||||+|+++|++++|..||......         ..+...+..+. +...+...+
T Consensus       172 ~~~GT~~Y~aPE~~--~-~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~---------~~~~~~i~~~~~~~~~~~~~~  239 (270)
T d1t4ha_         172 AVIGTPEFMAPEMY--E-EKYDESVDVYAFGMCMLEMATSEYPYSECQNA---------AQIYRRVTSGVKPASFDKVAI  239 (270)
T ss_dssp             ESCSSCCCCCGGGG--G-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH---------HHHHHHHTTTCCCGGGGGCCC
T ss_pred             CcccCccccCHHHh--C-CCCCCcCchhhHHHHHHHHHHCCCCCCCcccH---------HHHHHHHHcCCCCcccCccCC
Confidence            46799999999988  3 46899999999999999999999998643211         01222222222 222333344


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +.       +.+++..||+.||++|||+.|+++
T Consensus       240 ~~-------~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         240 PE-------VKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             HH-------HHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HH-------HHHHHHHHccCCHhHCcCHHHHhC
Confidence            43       344555699999999999999975

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.6e-21  Score=122.75  Aligned_cols=101  Identities=23%  Similarity=0.336  Sum_probs=72.4

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCC-CCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRN-NTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..||..|+|||.+  ....++.++||||||+++||++++.. |+......      .    +...+..+..+..+...++
T Consensus       186 ~~gt~~y~aPE~l--~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~------~----~~~~i~~~~~~~~~~~~~~  253 (309)
T d1fvra_         186 GRLPVRWMAIESL--NYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCA------E----LYEKLPQGYRLEKPLNCDD  253 (309)
T ss_dssp             --CCTTTCCHHHH--HHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHH------H----HHHHGGGTCCCCCCTTBCH
T ss_pred             eecCCcccchHHh--ccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHH------H----HHHHHHhcCCCCCCccCCH
Confidence            4589999999998  56789999999999999999999765 55433211      1    3333334444444555555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccCC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEAL  123 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~~  123 (133)
                      .       +..|+..||+.||++|||+++|++.|+++.+..
T Consensus       254 ~-------~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~~  287 (309)
T d1fvra_         254 E-------VYDLMRQCWREKPYERPSFAQILVSLNRMLEER  287 (309)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             H-------HHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence            4       444555599999999999999999998877543

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.3e-21  Score=119.06  Aligned_cols=98  Identities=22%  Similarity=0.310  Sum_probs=70.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHc-cCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVG-VRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..|+..|+|||.+  ....++.++||||||+++||+++ |..||......      ..   .......+..+..+...+.
T Consensus       174 ~~~~~~~~aPE~~--~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~------~~---~~~i~~~~~~~~~~~~~~~  242 (273)
T d1u46a_         174 RKVPFAWCAPESL--KTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGS------QI---LHKIDKEGERLPRPEDCPQ  242 (273)
T ss_dssp             --CCGGGCCHHHH--HHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHH------HH---HHHHHTSCCCCCCCTTCCH
T ss_pred             cccCcccCCHHHH--hCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHH------HH---HHHHHhCCCCCCCcccccH
Confidence            3578899999998  56788999999999999999997 78888654221      11   2222334444444444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGG  119 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~  119 (133)
                      .       +..|+..||+.||++|||+.+|++.|++.
T Consensus       243 ~-------l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         243 D-------IYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             H-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            3       44556669999999999999999988753

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.1e-21  Score=119.85  Aligned_cols=92  Identities=21%  Similarity=0.323  Sum_probs=66.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||+.|+|||++  ....++.++||||+||+++++++|+.||......      .    ....+... ....+...++
T Consensus       163 ~~~Gt~~Y~APE~~--~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~------~----~~~~i~~~-~~~~p~~~s~  229 (263)
T d2j4za1         163 TLCGTLDYLPPEMI--EGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQ------E----TYKRISRV-EFTFPDFVTE  229 (263)
T ss_dssp             ETTEEGGGCCHHHH--TTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHH------H----HHHHHHTT-CCCCCTTSCH
T ss_pred             ccCCCCcccCHHHH--cCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHH------H----HHHHHHcC-CCCCCccCCH
Confidence            35799999999998  5567899999999999999999999999653221      1    22222222 2233455565


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...+++       ..||+.||++|||++++++
T Consensus       230 ~~~~li-------~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         230 GARDLI-------SRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             HHHHHH-------HHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHH-------HHHccCCHhHCcCHHHHHc
Confidence            544444       4599999999999999986

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.6e-20  Score=117.02  Aligned_cols=96  Identities=16%  Similarity=0.206  Sum_probs=64.1

Q ss_pred             CCCCccccccCccccccccCcc-ccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGI-SHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~-~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ++.+||+.|+|||++  ....+ +.++||||+|++++++++|+.||.......    ..    .................
T Consensus       163 ~~~~GT~~Y~APE~~--~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~----~~----~~~~~~~~~~~~~~~~~  232 (271)
T d1nvra_         163 NKMCGTLPYVAPELL--KRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSC----QE----YSDWKEKKTYLNPWKKI  232 (271)
T ss_dssp             CCCCSCGGGSCTHHH--HCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTS----HH----HHHHHTTCTTSTTGGGS
T ss_pred             cceeeCcCccCHhHh--cCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHH----HH----HHHHhcCCCCCCccccC
Confidence            356899999999998  44454 678999999999999999999996543221    11    11111111111112233


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +...       ..++..||+.||++|||++++++
T Consensus       233 s~~~-------~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         233 DSAP-------LALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             CHHH-------HHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CHHH-------HHHHHHHcCCChhHCcCHHHHhc
Confidence            4433       34455599999999999999875

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-20  Score=118.89  Aligned_cols=118  Identities=15%  Similarity=0.073  Sum_probs=74.0

Q ss_pred             CCCccccccCcccccccc----CccccccchhhhhHHHHHHHccCCCCCCCCCCCC-----CcchhhhHHHH-hhhcCCc
Q 040499            3 DARGTVSYIAPEVFCRNF----GGISHKSDVYGFGMTVLELVGVRNNTASGVTHTS-----STEMYFPDWFY-KLLEPGE   72 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~----~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~   72 (133)
                      ..+||+.|+|||++....    ..++.++||||||+++||+++|..|+........     ........... .......
T Consensus       171 ~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (303)
T d1vjya_         171 HRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKL  250 (303)
T ss_dssp             -CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCC
T ss_pred             ceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhcccc
Confidence            357999999999873211    1367899999999999999999877643321110     00001111111 1222222


Q ss_pred             cccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           73 DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                      .+..+....  ..+....+..++..||+.||++|||+.+|++.|+++.+.
T Consensus       251 ~p~~~~~~~--~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  298 (303)
T d1vjya_         251 RPNIPNRWQ--SCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             CCCCCGGGG--GCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCcccC--ChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHh
Confidence            222222111  223456688899999999999999999999999877543

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=2.5e-20  Score=118.07  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=62.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--cccCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--KRHGLV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   80 (133)
                      +.+||+.|+|||++  ....|+.++||||+||+++++++|..||.+....      ..   ...........  ......
T Consensus       168 ~~~GT~~y~APE~~--~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~------~~---~~~i~~~~~~~~~~~~~~~  236 (307)
T d1a06a_         168 TACGTPGYVAPEVL--AQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDA------KL---FEQILKAEYEFDSPYWDDI  236 (307)
T ss_dssp             -----CTTSCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH------HH---HHHHHTTCCCCCTTTTTTS
T ss_pred             eeeeCccccCcHHH--cCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHH------HH---HHHHhccCCCCCCccccCC
Confidence            46799999999998  5567899999999999999999999999753221      11   11111111111  112334


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ++...+       ++..||+.||++|||+.++++
T Consensus       237 s~~~~~-------li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         237 SDSAKD-------FIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             CHHHHH-------HHHHHSCSSGGGSCCHHHHHH
T ss_pred             CHHHHH-------HHHHHccCCHhHCcCHHHHhc
Confidence            554444       445599999999999999987

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.6e-21  Score=121.69  Aligned_cols=101  Identities=23%  Similarity=0.384  Sum_probs=71.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCC-CCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNN-TASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..+||+.|+|||++  ....++.++||||||+++||++++..| +.......         .+...+..+..+..+...+
T Consensus       206 ~~~gt~~y~aPE~~--~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~  274 (311)
T d1t46a_         206 NARLPVKWMAPESI--FNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDS---------KFYKMIKEGFRMLSPEHAP  274 (311)
T ss_dssp             SSEECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSH---------HHHHHHHHTCCCCCCTTSC
T ss_pred             ecccChHHcCHHHh--cCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHH---------HHHHHHhcCCCCCCccccc
Confidence            35689999999998  557889999999999999999985444 44332211         1222333333444444455


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCcc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLE  121 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~  121 (133)
                      +.       +..|+..||+.||.+|||+++|++.|++.++
T Consensus       275 ~~-------l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~  307 (311)
T d1t46a_         275 AE-------MYDIMKTCWDADPLKRPTFKQIVQLIEKQIS  307 (311)
T ss_dssp             HH-------HHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHcCCChhHCcCHHHHHHHHHHhhc
Confidence            53       4455556999999999999999999987654

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.2e-20  Score=116.83  Aligned_cols=94  Identities=16%  Similarity=0.240  Sum_probs=66.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcC-CccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEP-GEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   81 (133)
                      ..+||+.|+|||++  ....++.++||||+||+++++++|..||......      ..   ....... ......+...+
T Consensus       175 ~~~gt~~Y~aPE~~--~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~------~~---~~~~~~~~~~~~~~~~~~s  243 (293)
T d1yhwa1         175 TMVGTPYWMAPEVV--TRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPL------RA---LYLIATNGTPELQNPEKLS  243 (293)
T ss_dssp             CCCSCGGGCCHHHH--SSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH------HH---HHHHHHHCSCCCSSGGGSC
T ss_pred             ccccCCCccChhhh--cCCCCCchhceehHhHHHHHHhhCCCCCCCCCHH------HH---HHHHHhCCCCCCCCcccCC
Confidence            45799999999998  5678899999999999999999999999653221      11   1111111 11222234445


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....+       ++..||+.||++|||+.++++
T Consensus       244 ~~~~~-------li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         244 AIFRD-------FLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             HHHHH-------HHHHHTCSSTTTSCCHHHHTT
T ss_pred             HHHHH-------HHHHHccCChhHCcCHHHHhc
Confidence            54444       444599999999999999985

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.2e-20  Score=118.78  Aligned_cols=101  Identities=15%  Similarity=0.158  Sum_probs=65.9

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      .+.+||+.|+|||++  ....|+.++||||+||+++++++|..||.+......      ...+........ ...+   .
T Consensus       171 ~~~~gt~~y~aPE~~--~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~------~~~~~~~i~~~~-~~~~---~  238 (335)
T d2ozaa1         171 TTPCYTPYYVAPEVL--GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI------SPGMKTRIRMGQ-YEFP---N  238 (335)
T ss_dssp             CCCSCCCSSCCCCCC--CGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------------CCCSCS-SSCC---T
T ss_pred             ccccCCcccCCcHHH--cCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHH------HHHHHHHHhcCC-CCCC---C
Confidence            346799999999998  566899999999999999999999999976433210      000111111111 0111   1


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .........+..|+..||+.||++|||+.++++
T Consensus       239 ~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         239 PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             THHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             cccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            111122234555566699999999999999987

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1e-20  Score=119.87  Aligned_cols=96  Identities=23%  Similarity=0.286  Sum_probs=66.0

Q ss_pred             CCCccccccCcccccc-ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            3 DARGTVSYIAPEVFCR-NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~-~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ..+||+.|+|||++.. ..+.|+.++||||+||++|++++|..||.+....         ...........+...+...+
T Consensus       170 ~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~---------~~~~~i~~~~~~~~~~~~~s  240 (309)
T d1u5ra_         170 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM---------SALYHIAQNESPALQSGHWS  240 (309)
T ss_dssp             CCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH---------HHHHHHHHSCCCCCSCTTSC
T ss_pred             ccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHH---------HHHHHHHhCCCCCCCCCCCC
Confidence            4679999999999842 2346889999999999999999999998653221         11222222222222233345


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      +...       .++..||+.||++|||+.++++
T Consensus       241 ~~~~-------~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         241 EYFR-------NFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             HHHH-------HHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHH-------HHHHHHCcCChhHCcCHHHHHh
Confidence            5444       4455599999999999999975

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.6e-20  Score=119.05  Aligned_cols=100  Identities=19%  Similarity=0.317  Sum_probs=72.7

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccC-CCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVR-NNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      .+||+.|+|||.+  ....++.++||||||+++||++++. .|+......         . ....+..+..+..+...++
T Consensus       195 ~~~t~~y~aPe~l--~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~---------~-~~~~i~~~~~~~~p~~~~~  262 (308)
T d1p4oa_         195 GLLPVRWMSPESL--KDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNE---------Q-VLRFVMEGGLLDKPDNCPD  262 (308)
T ss_dssp             SEECGGGCCHHHH--HHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHH---------H-HHHHHHTTCCCCCCTTCCH
T ss_pred             eecccccCCHHHH--ccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHH---------H-HHHHHHhCCCCCCcccchH
Confidence            4689999999998  5678889999999999999999975 555433211         1 2222333334444444454


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                             .+..++..||+.||++|||+++|++.|++..+.
T Consensus       263 -------~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~  295 (308)
T d1p4oa_         263 -------MLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP  295 (308)
T ss_dssp             -------HHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred             -------HHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCC
Confidence                   455666669999999999999999999987654

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.79  E-value=7.6e-20  Score=114.33  Aligned_cols=99  Identities=20%  Similarity=0.283  Sum_probs=64.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--cccCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--KRHGLV   80 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~   80 (133)
                      +.+||+.|+|||++  ....++.++||||+|++++++++|..||......         ......+.....+  ......
T Consensus       173 ~~~Gt~~Y~aPE~~--~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~---------~~~~~~~~~~~~~~~~~~~~~  241 (277)
T d1o6ya_         173 AVIGTAQYLSPEQA--RGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV---------SVAYQHVREDPIPPSARHEGL  241 (277)
T ss_dssp             ------TTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---------HHHHHHHHCCCCCGGGTSSSC
T ss_pred             cccCcccccCHHHH--cCCCCCcceecccchHHHHHHHhCCCCCCCcCHH---------HHHHHHHhcCCCCCchhccCC
Confidence            45799999999998  5567899999999999999999999999753221         1122222222211  122334


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCC-CHHHHHHHHccC
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRS-SMSKAVEMLEGG  119 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rp-s~~~v~~~l~~~  119 (133)
                      ++...+++       ..||+.||++|| ++++++..|.++
T Consensus       242 s~~l~~li-------~~~L~~dp~~R~~sa~~l~~~l~r~  274 (277)
T d1o6ya_         242 SADLDAVV-------LKALAKNPENRYQTAAEMRADLVRV  274 (277)
T ss_dssp             CHHHHHHH-------HHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             CHHHHHHH-------HHHccCCHhHCHhHHHHHHHHHHHH
Confidence            55444444       449999999999 899998887764

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-19  Score=114.05  Aligned_cols=97  Identities=19%  Similarity=0.223  Sum_probs=66.3

Q ss_pred             CCCCccccccCcccccc---ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC-cccccc
Q 040499            2 LDARGTVSYIAPEVFCR---NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG-EDLKRH   77 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~---~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   77 (133)
                      ++.+||+.|+|||++..   ....|+.++||||+||+++++++|..||.......      .   ........ .....+
T Consensus       168 ~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~------~---~~~i~~~~~~~~~~~  238 (288)
T d2jfla1         168 DSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMR------V---LLKIAKSEPPTLAQP  238 (288)
T ss_dssp             TCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGG------H---HHHHHHSCCCCCSSG
T ss_pred             cccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHH------H---HHHHHcCCCCCCCcc
Confidence            35789999999998732   23467899999999999999999999997543221      1   11111111 112223


Q ss_pred             CCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           78 GLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        78 ~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ...++...       .|+..||+.||++|||+.++++
T Consensus       239 ~~~s~~~~-------~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         239 SRWSSNFK-------DFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             GGSCHHHH-------HHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ccCCHHHH-------HHHHHHccCChhHCcCHHHHhc
Confidence            34455444       4445599999999999999976

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.8e-21  Score=119.17  Aligned_cols=91  Identities=13%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  ....++.++||||+||+++++++|..||......      .    ....+... ....+...++
T Consensus       169 ~~~GT~~Y~APE~~--~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~------~----~~~~i~~~-~~~~p~~~s~  235 (288)
T d1uu3a_         169 SFVGTAQYVSPELL--TEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEY------L----IFQKIIKL-EYDFPEKFFP  235 (288)
T ss_dssp             -CCCCGGGCCHHHH--HTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHTT-CCCCCTTCCH
T ss_pred             cccCCccccCceee--ccCCCCcccceehhhHHHHHHhhCCCCCCCcCHH------H----HHHHHHcC-CCCCCccCCH
Confidence            46799999999998  5678899999999999999999999999753221      1    12222122 1233444555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAV  113 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~  113 (133)
                      ...       +|+..||+.||++|||++|++
T Consensus       236 ~~~-------~li~~~L~~dP~~R~t~~e~~  259 (288)
T d1uu3a_         236 KAR-------DLVEKLLVLDATKRLGCEEME  259 (288)
T ss_dssp             HHH-------HHHHTTSCSSGGGSTTSGGGT
T ss_pred             HHH-------HHHHHHccCCHhHCcCHHHHc
Confidence            444       455559999999999999863

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-19  Score=114.64  Aligned_cols=47  Identities=26%  Similarity=0.339  Sum_probs=40.1

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGV   50 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~   50 (133)
                      ++.+||+.|+|||++  .+..|+.++||||+||+++|+++|+.||.+..
T Consensus       161 ~~~~GT~~Y~APEvl--~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~  207 (322)
T d1s9ja_         161 NSFVGTRSYMSPERL--QGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPD  207 (322)
T ss_dssp             ---CCSSCCCCHHHH--HCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCC
T ss_pred             ccccCCccccCchHH--cCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence            457899999999999  56789999999999999999999999997643

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.4e-19  Score=114.19  Aligned_cols=106  Identities=11%  Similarity=0.008  Sum_probs=69.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  .+..++.++||||+|++++|+++|..||...........  ........... .........++
T Consensus       172 ~~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~p~  246 (299)
T d1ckia_         172 NLTGTARYASINTH--LGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK--YERISEKKMST-PIEVLCKGYPS  246 (299)
T ss_dssp             SCCCCSSSCCHHHH--TTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC---------HHHHHHHHHHS-CHHHHTTTSCH
T ss_pred             CcCCCccccCHHHH--hCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHH--HHHhhcccCCC-ChhHhccCCCH
Confidence            45799999999998  556789999999999999999999999976544321011  00111111000 11111223344


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                      .       +..++..||+.||++||+++++.+.|+...
T Consensus       247 ~-------~~~li~~cl~~~p~~RP~~~~i~~~l~~~~  277 (299)
T d1ckia_         247 E-------FATYLNFCRSLRFDDKPDYSYLRQLFRNLF  277 (299)
T ss_dssp             H-------HHHHHHHHHHSCTTCCCCHHHHHHHHHHHH
T ss_pred             H-------HHHHHHHHccCChhHCcCHHHHHHHHHHHH
Confidence            3       445555599999999999999888777653

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2e-19  Score=113.18  Aligned_cols=93  Identities=12%  Similarity=0.196  Sum_probs=65.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGL   79 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   79 (133)
                      +..||+.|+|||++  ....++.++||||+|++++++++|+.||.+....      .    ....+....   ....+..
T Consensus       175 ~~~~t~~y~APE~~--~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~  242 (293)
T d1jksa_         175 NIFGTPEFVAPEIV--NYEPLGLEADMWSIGVITYILLSGASPFLGDTKQ------E----TLANVSAVNYEFEDEYFSN  242 (293)
T ss_dssp             CCCCCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHTTCCCCCHHHHTT
T ss_pred             ccCCCCcccCHHHH--cCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHH------H----HHHHHHhcCCCCCchhcCC
Confidence            46799999999998  5668899999999999999999999999754221      1    111111111   1112233


Q ss_pred             CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           80 VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        80 ~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      .+..       +.+++..||+.||++|||++++++
T Consensus       243 ~s~~-------~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         243 TSAL-------AKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             SCHH-------HHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCHH-------HHHHHHHHccCChhHCcCHHHHhc
Confidence            3443       445555699999999999999987

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.8e-19  Score=113.07  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=41.1

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      .+.+||+.|+|||++  ....|+.++||||+||+++|+++|..||.+.
T Consensus       173 ~~~~gT~~Y~APE~~--~~~~y~~~~DiwSlG~il~ell~g~~pf~~~  218 (305)
T d1blxa_         173 TSVVVTLWYRAPEVL--LQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  218 (305)
T ss_dssp             CCCCCCCTTCCHHHH--TTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcccChhhcCcchh--cCCCCChhehhhchHHHHHHHHHCCCCCCCC
Confidence            356799999999998  5678999999999999999999999999754

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.76  E-value=4.8e-19  Score=113.85  Aligned_cols=95  Identities=16%  Similarity=0.135  Sum_probs=64.6

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCChh
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTEE   83 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
                      .+||+.|+|||++  .+..++.++||||+||++++|++|..||.+....      .....+.. .............++.
T Consensus       185 ~~gT~~Y~aPEv~--~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~------~~~~~i~~-~~~~~~~~~~~~~s~~  255 (350)
T d1koaa2         185 TTGTAEFAAPEVA--EGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDD------ETLRNVKS-CDWNMDDSAFSGISED  255 (350)
T ss_dssp             ECSCTTTCCHHHH--HTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHH------HHHHHHHH-TCCCSCCGGGGGCCHH
T ss_pred             ecCcccccCHHHH--cCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHH------HHHHHHHh-CCCCCCcccccCCCHH
Confidence            5799999999998  5667899999999999999999999999653211      11111110 0111111112234444


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           84 EEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        84 ~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ..       .|+..||+.||++|||++++++
T Consensus       256 ~~-------~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         256 GK-------DFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             HH-------HHHHHHCCSSGGGSCCHHHHHH
T ss_pred             HH-------HHHHHHccCChhHCcCHHHHhc
Confidence            44       4445599999999999999987

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5e-19  Score=113.26  Aligned_cols=92  Identities=18%  Similarity=0.328  Sum_probs=67.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  .+..|+.++|+||+||+++++++|..||.+....      .    +....... ....|...++
T Consensus       164 ~~~GT~~Y~aPE~~--~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~------~----~~~~i~~~-~~~~p~~~s~  230 (337)
T d1o6la_         164 TFCGTPEYLAPEVL--EDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHE------R----LFELILME-EIRFPRTLSP  230 (337)
T ss_dssp             CCEECGGGCCGGGG--SSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHC-CCCCCTTSCH
T ss_pred             cceeCHHHhhhhhc--cCCCCChhhcccchhhHHHHHHHCCCCCCCcCHH------H----HHHHHhcC-CCCCCccCCH
Confidence            46899999999998  5678999999999999999999999998754321      1    11111111 2234555666


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                      ...+++.+       ||+.||++|++     +.++++
T Consensus       231 ~~~dli~~-------~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         231 EAKSLLAG-------LLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             HHHHHHHH-------HTCSSTTTSTTCSTTTHHHHHT
T ss_pred             HHHHHHHh-------hccCCchhhcccccccHHHHHc
Confidence            55555554       88999999995     788875

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=2.9e-18  Score=110.71  Aligned_cols=96  Identities=16%  Similarity=0.183  Sum_probs=66.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||+.|+|||++. ....|+.++||||+||++++|++|..||.......    .   ..+... ........+...++
T Consensus       164 ~~~GT~~y~APE~~~-~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~----~---~~~~~~-~~~~~~~~~~~~s~  234 (364)
T d1omwa3         164 ASVGTHGYMAPEVLQ-KGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD----K---HEIDRM-TLTMAVELPDSFSP  234 (364)
T ss_dssp             SCCSCGGGCCHHHHS-TTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSC----H---HHHHHH-SSSCCCCCCSSSCH
T ss_pred             ccccccccchhHHhh-cCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHH----H---HHHHHh-cccCCCCCCCCCCH
Confidence            467999999999983 13468899999999999999999999997643322    0   011111 11223333455666


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~  114 (133)
                      ...+++.+       ||+.||++||+     ++++++
T Consensus       235 ~~~~li~~-------~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         235 ELRSLLEG-------LLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             HHHHHHHH-------HTCSSTTTSTTTSSSTHHHHHT
T ss_pred             HHHHHHHH-------HcccCHHHhCCCcccCHHHHHc
Confidence            55555544       99999999999     688875

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.75  E-value=1.1e-19  Score=114.33  Aligned_cols=108  Identities=9%  Similarity=-0.034  Sum_probs=71.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +++||+.|+|||++  ....++.++||||+|++++++++|..||.+......   ..........-............++
T Consensus       172 ~~~GT~~y~aPE~~--~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~p~  246 (293)
T d1csna_         172 NLSGTARYMSINTH--LGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATN---KQKYERIGEKKQSTPLRELCAGFPE  246 (293)
T ss_dssp             CCCSCTTTCCHHHH--TTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCH---HHHHHHHHHHHHHSCHHHHTTTSCH
T ss_pred             ceEEchhhcCHHHh--cCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhH---HHHHHHHHhccCCCChHHhcCCCCH
Confidence            46799999999998  566799999999999999999999999976544321   1100111100000001111222333


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHHHHHHHHccCccC
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVEMLEGGLEA  122 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~~l~~~~~~  122 (133)
                             .+..++..||+.+|++||+.+.+.+.|+++.+.
T Consensus       247 -------~l~~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~  279 (293)
T d1csna_         247 -------EFYKYMHYARNLAFDATPDYDYLQGLFSKVLER  279 (293)
T ss_dssp             -------HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHH
Confidence                   355556669999999999999988888776544

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5e-18  Score=107.03  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=65.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc---------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED---------   73 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------   73 (133)
                      +.+||..|+|||++. ....++.++||||+||+++++++|..||.+...      .+....+...+.....         
T Consensus       159 ~~~gt~~y~aPE~~~-~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~------~~~l~~i~~~~~~~~~~~~~~~~~~  231 (299)
T d1ua2a_         159 HQVVTRWYRAPELLF-GARMYGVGVDMWAVGCILAELLLRVPFLPGDSD------LDQLTRIFETLGTPTEEQWPDMCSL  231 (299)
T ss_dssp             CSCCCCTTCCHHHHT-TCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH------HHHHHHHHHHHCCCCTTTSSSTTSS
T ss_pred             ceecChhhccHHHHc-cCCCCChhhhhhhcchHHHHHHhCcCCCCCCCH------HHHHHHHHHhcCCCChhhccchhcc
Confidence            457999999999873 234678999999999999999999988865422      1111111111100000         


Q ss_pred             --------------ccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           74 --------------LKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        74 --------------~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                                    .......++       .+.+|+..||+.||++|||++|+++  .+.+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~s~-------~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~  286 (299)
T d1ua2a_         232 PDYVTFKSFPGIPLHHIFSAAGD-------DLLDLIQGLFLFNPCARITATQALKMKYFSNR  286 (299)
T ss_dssp             TTCCCCCCCCCCCHHHHCTTCCH-------HHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSS
T ss_pred             chhhhhccCCCCChHHhcccCCH-------HHHHHHHHHccCChhhCcCHHHHhCCHhhCCC
Confidence                          000011223       3555666699999999999999986  55543

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=9.7e-19  Score=111.07  Aligned_cols=93  Identities=20%  Similarity=0.287  Sum_probs=66.7

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVT   81 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (133)
                      ++.+||+.|+|||++  .+..|+.++||||+||+++++++|..||.+.....          ....+..+ ....+...+
T Consensus       159 ~~~~Gt~~Y~APE~l--~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~----------~~~~i~~~-~~~~p~~~s  225 (316)
T d1fota_         159 YTLCGTPDYIAPEVV--STKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMK----------TYEKILNA-ELRFPPFFN  225 (316)
T ss_dssp             CCCCSCTTTCCHHHH--TTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH----------HHHHHHHC-CCCCCTTSC
T ss_pred             ccccCcccccCHHHH--cCCCCCchhhccccchhHHHHHhCCCCCCCcCHHH----------HHHHHHcC-CCCCCCCCC
Confidence            356899999999998  56678999999999999999999999997542211          11111111 123344456


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      +...+++.+       ||+.||.+|+     +++++++
T Consensus       226 ~~~~~li~~-------~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         226 EDVKDLLSR-------LITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             HHHHHHHHH-------HTCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHHH-------HhhhCHHhccccchhhHHHHHc
Confidence            655555554       8899999996     8999875

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.4e-18  Score=108.34  Aligned_cols=92  Identities=18%  Similarity=0.298  Sum_probs=64.9

Q ss_pred             CCCCccccccCccccccccCc-cccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCC
Q 040499            2 LDARGTVSYIAPEVFCRNFGG-ISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLV   80 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~-~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (133)
                      ++.+||+.|+|||++.  ... ++.++||||+||+++++++|..||....        .    ..   ..  ....+...
T Consensus       167 ~~~~GT~~y~aPE~~~--~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~--------~----i~---~~--~~~~~~~~  227 (273)
T d1xwsa_         167 TDFDGTRVYSPPEWIR--YHRYHGRSAAVWSLGILLYDMVCGDIPFEHDE--------E----II---RG--QVFFRQRV  227 (273)
T ss_dssp             CCCCSCGGGSCHHHHH--HSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH--------H----HH---HC--CCCCSSCC
T ss_pred             cccccCCCcCCHHHHc--CCCCCCcccccccceeeehhHhhCCCCCCCch--------H----Hh---hc--ccCCCCCC
Confidence            4578999999999983  334 4677999999999999999999986321        0    11   10  11223345


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      ++...++       +..||+.||++|||++++++  .++++
T Consensus       228 s~~~~~l-------i~~~L~~dp~~R~s~~eil~hp~~~~~  261 (273)
T d1xwsa_         228 SSECQHL-------IRWCLALRPSDRPTFEEIQNHPWMQDV  261 (273)
T ss_dssp             CHHHHHH-------HHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             CHHHHHH-------HHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence            5554444       44599999999999999986  45544

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.4e-19  Score=114.09  Aligned_cols=92  Identities=16%  Similarity=0.219  Sum_probs=66.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      ..+||+.|+|||++  ....++.++||||+||++|++++|..||.+.....          +...+... .+..|...+.
T Consensus       162 ~~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~----------~~~~i~~~-~~~~p~~~s~  228 (320)
T d1xjda_         162 TFCGTPDYIAPEIL--LGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEE----------LFHSIRMD-NPFYPRWLEK  228 (320)
T ss_dssp             CCCSCGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH----------HHHHHHHC-CCCCCTTSCH
T ss_pred             ccCCCCCcCCHHHH--cCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHH----------HHHHHHcC-CCCCCccCCH
Confidence            46799999999999  56789999999999999999999999997542211          22222212 2234455566


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCHH-HHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSSMS-KAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps~~-~v~~  114 (133)
                      ...+++.       .||+.||++||++. +|++
T Consensus       229 ~~~dli~-------~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         229 EAKDLLV-------KLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             HHHHHHH-------HHSCSSGGGSBTTBSCGGG
T ss_pred             HHHHHHH-------HhcccCCCCCcCHHHHHHh
Confidence            5544444       49999999999985 6753

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.6e-18  Score=111.46  Aligned_cols=92  Identities=15%  Similarity=0.242  Sum_probs=66.0

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +.+||+.|+|||++  .+..++.++||||+||++|++++|..||.+....      .    ....+... ....+...++
T Consensus       197 ~~~Gt~~Y~APE~~--~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~------~----~~~~i~~~-~~~~p~~~s~  263 (350)
T d1rdqe_         197 TLCGTPEALAPEII--LSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPI------Q----IYEKIVSG-KVRFPSHFSS  263 (350)
T ss_dssp             CCEECGGGCCHHHH--TTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------H----HHHHHHHC-CCCCCTTCCH
T ss_pred             cccCccccCCHHHH--cCCCCCccccccchhHHHHHHHhCCCCCCCcCHH------H----HHHHHhcC-CCCCCccCCH
Confidence            46799999999998  5678899999999999999999999999753211      1    11111111 1223445566


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCC-----CHHHHHH
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRS-----SMSKAVE  114 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rp-----s~~~v~~  114 (133)
                      ...+++.+       ||+.||.+|+     +++++++
T Consensus       264 ~~~~li~~-------~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         264 DLKDLLRN-------LLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             HHHHHHHH-------HSCSCTTTCTTSSTTTTHHHHT
T ss_pred             HHHHHHHH-------HhhhCHHhccccccccHHHHHc
Confidence            55555554       8999999994     8999985

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.72  E-value=3e-18  Score=110.23  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc---cccccCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE---DLKRHGLV   80 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   80 (133)
                      ..||+.|+|||++  ....++.++||||+||++++|++|..||.+....      .    ....+....   ........
T Consensus       188 ~~gt~~y~aPE~~--~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~------~----~~~~i~~~~~~~~~~~~~~~  255 (352)
T d1koba_         188 TTATAEFAAPEIV--DREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDL------E----TLQNVKRCDWEFDEDAFSSV  255 (352)
T ss_dssp             ECSSGGGCCHHHH--TTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHH------H----HHHHHHHCCCCCCSSTTTTS
T ss_pred             ccCcccccCHHHH--cCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH------H----HHHHHHhCCCCCCcccccCC
Confidence            4689999999998  5678999999999999999999999999654221      1    111111111   11112334


Q ss_pred             ChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccC
Q 040499           81 TEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGG  119 (133)
Q Consensus        81 ~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~  119 (133)
                      +...       ..|+..||+.||.+|||+.++++  .+++.
T Consensus       256 s~~~-------~~li~~~L~~dp~~R~s~~eil~Hp~~~~~  289 (352)
T d1koba_         256 SPEA-------KDFIKNLLQKEPRKRLTVHDALEHPWLKGD  289 (352)
T ss_dssp             CHHH-------HHHHHTTSCSSGGGSCCHHHHHTSTTTSSC
T ss_pred             CHHH-------HHHHHHHccCChhHCcCHHHHhcCHhhCCC
Confidence            4443       44555599999999999999987  35443

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.7e-17  Score=102.03  Aligned_cols=105  Identities=11%  Similarity=0.003  Sum_probs=64.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccc--------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDL--------   74 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   74 (133)
                      +.+||+.|+|||++.. ...++.++||||+|++++++++|+.||.+....      .....+..........        
T Consensus       180 ~~~gT~~Y~aPE~~~~-~~~~~~k~DiwSlGvil~el~~g~~pf~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~  252 (318)
T d3blha1         180 NRVVTLWYRPPELLLG-ERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQ------HQLALISQLCGSITPEVWPNVDNY  252 (318)
T ss_dssp             SCCSCGGGCCHHHHTT-CSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHHHHHCCCCTTTSTTCCCC
T ss_pred             ceecCHHHhhHHHHcC-CCCCCcHHHcccCCceeeeHhhCCCCCCCCCHH------HHHHHHHHhcCCCChhhccccchh
Confidence            3579999999998732 346889999999999999999999998653211      1111111111000000        


Q ss_pred             ------cccCCCChhHHHH------HHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           75 ------KRHGLVTEEEEVI------VRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        75 ------~~~~~~~~~~~~~------~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                            .............      ...+.+|+..||+.||++|||++|++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~  304 (318)
T d3blha1         253 ELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN  304 (318)
T ss_dssp             -------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHc
Confidence                  0000000111111      123456778899999999999999986

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.66  E-value=7.5e-17  Score=100.61  Aligned_cols=96  Identities=16%  Similarity=0.212  Sum_probs=63.8

Q ss_pred             CCCccccccCcccccc----ccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCcc--ccc
Q 040499            3 DARGTVSYIAPEVFCR----NFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGED--LKR   76 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~----~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   76 (133)
                      ..+||..|++||.+..    ....++.++||||+|++++++++|..||.+....      ..   ..........  ...
T Consensus       168 ~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~------~~---~~~i~~~~~~~~~~~  238 (277)
T d1phka_         168 EVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM------LM---LRMIMSGNYQFGSPE  238 (277)
T ss_dssp             CCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH------HH---HHHHHHTCCCCCTTT
T ss_pred             eeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHH------HH---HHHHHhCCCCCCCcc
Confidence            4679999999998732    2235678999999999999999999999754321      11   1111111111  111


Q ss_pred             cCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           77 HGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                      ....++...       +++..||+.||.+||++.+|++
T Consensus       239 ~~~~s~~~~-------~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         239 WDDYSDTVK-------DLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             GGGSCHHHH-------HHHHHHCCSSGGGSCCHHHHTT
T ss_pred             cccCCHHHH-------HHHHHHccCChhHCcCHHHHHc
Confidence            223455444       4445599999999999999875

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=9.7e-17  Score=102.00  Aligned_cols=97  Identities=18%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCc--cccccCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGE--DLKRHGLVT   81 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~   81 (133)
                      ..||+.|++||.+  ....++.++||||+||+++++++|..||......      ..   .........  ........+
T Consensus       163 ~~~t~~y~ape~~--~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~------~~---~~~i~~~~~~~~~~~~~~~s  231 (321)
T d1tkia_         163 LFTAPEYYAPEVH--QHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQ------QI---IENIMNAEYTFDEEAFKEIS  231 (321)
T ss_dssp             EESCGGGSCHHHH--TTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHH------HH---HHHHHHTCCCCCHHHHTTSC
T ss_pred             cccccccccchhc--cCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHH------HH---HHHHHhCCCCCChhhccCCC
Confidence            4588999999988  5678899999999999999999999999754321      11   111111111  111112234


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHcc
Q 040499           82 EEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEG  118 (133)
Q Consensus        82 ~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~  118 (133)
                      ..       +..++..||+.||++|||+.++++  .+.+
T Consensus       232 ~~-------~~~li~~~L~~dp~~R~s~~eil~hp~~~~  263 (321)
T d1tkia_         232 IE-------AMDFVDRLLVKERKSRMTASEALQHPWLKQ  263 (321)
T ss_dssp             HH-------HHHHHHTTSCSSGGGSCCHHHHHHSHHHHS
T ss_pred             HH-------HHHHHHHHccCChhHCcCHHHHhcCHhhcc
Confidence            43       445555599999999999999987  4543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-16  Score=101.04  Aligned_cols=114  Identities=13%  Similarity=0.038  Sum_probs=67.4

Q ss_pred             CCCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCc-----------------chhhhHHH
Q 040499            2 LDARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSST-----------------EMYFPDWF   64 (133)
Q Consensus         2 ~~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~-----------------~~~~~~~~   64 (133)
                      ++.+||..|+|||++.. ...++.++||||+||+++++++|..||.+........                 ........
T Consensus       176 ~~~~~t~~y~aPE~~~~-~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (346)
T d1cm8a_         176 TGYVVTRWYRAPEVILN-WMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNY  254 (346)
T ss_dssp             CSSCSCGGGCCTHHHHT-TTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHH
T ss_pred             ccccccccccCHHHHcC-CCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhh
Confidence            45789999999998732 3456889999999999999999999987542210000                 00000000


Q ss_pred             HhhhcCCc---cccccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccCC
Q 040499           65 YKLLEPGE---DLKRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEAL  123 (133)
Q Consensus        65 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~~  123 (133)
                      ........   ........++.       +.+|+..||+.||++|||+.++++  .++++....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~s~~-------~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~~~  311 (346)
T d1cm8a_         255 MKGLPELEKKDFASILTNASPL-------AVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDTE  311 (346)
T ss_dssp             HHHSCCCCCCCGGGTCTTCCHH-------HHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC---
T ss_pred             hccCCcccccchHHhccCCCHH-------HHHHHHHHCcCChhHCcCHHHHhcChhhCcCCCcc
Confidence            00000000   00111222333       344555699999999999999997  566655443

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.3e-16  Score=100.82  Aligned_cols=116  Identities=16%  Similarity=0.082  Sum_probs=68.8

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcC------------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEP------------   70 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------   70 (133)
                      ..+||..|+|||++  ....++.++|+||+|++++++++|+.||.....................+..            
T Consensus       188 ~~~gt~~y~aPE~~--~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~  265 (362)
T d1q8ya_         188 NSIQTREYRSPEVL--LGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYT  265 (362)
T ss_dssp             SCCSCGGGCCHHHH--HTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTH
T ss_pred             cccccccccChhhc--cccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhccccc
Confidence            45799999999988  5567899999999999999999999998754332111111111000000000            


Q ss_pred             ------C-ccccccCC-----------CChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCc
Q 040499           71 ------G-EDLKRHGL-----------VTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGL  120 (133)
Q Consensus        71 ------~-~~~~~~~~-----------~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~  120 (133)
                            . ........           ...........+..|+..|++.||.+|||++|+++  .+++..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~  335 (362)
T d1q8ya_         266 RTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  335 (362)
T ss_dssp             HHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             ccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCC
Confidence                  0 00000000           00111234456778888999999999999999997  465443

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-16  Score=101.10  Aligned_cols=102  Identities=15%  Similarity=0.191  Sum_probs=65.4

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCCccccccCCCCh
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPGEDLKRHGLVTE   82 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (133)
                      +..||+.|++||.+......++.++||||+||+++++++|+.||........      ...+..... ...+..+...++
T Consensus       189 ~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~------~~~i~~~~~-~~~~~~~~~~s~  261 (322)
T d1vzoa_         189 DFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS------QAEISRRIL-KSEPPYPQEMSA  261 (322)
T ss_dssp             GGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC------HHHHHHHHH-HCCCCCCTTSCH
T ss_pred             ccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHH------HHHHHHhcc-cCCCCCcccCCH
Confidence            3568999999999844334577899999999999999999999976644321      011111111 112223344555


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCC-----HHHHHH--HHcc
Q 040499           83 EEEVIVRKMIIVRLWCIQTNPSDRSS-----MSKAVE--MLEG  118 (133)
Q Consensus        83 ~~~~~~~~~~~l~~~cl~~~p~~Rps-----~~~v~~--~l~~  118 (133)
                      ...++       +..||+.||++|++     ++|+++  .+++
T Consensus       262 ~~~~l-------i~~~l~~dP~~R~s~~~~t~~eil~Hpff~~  297 (322)
T d1vzoa_         262 LAKDL-------IQRLLMKDPKKRLGCGPRDADEIKEHLFFQK  297 (322)
T ss_dssp             HHHHH-------HHHHTCSSGGGSTTSSTTTHHHHHTSGGGTT
T ss_pred             HHHHH-------HHHHcccCHHHcCCCCcccHHHHHcCHhhcC
Confidence            44444       44599999999994     788875  4444

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-15  Score=97.20  Aligned_cols=46  Identities=24%  Similarity=0.346  Sum_probs=38.7

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..+||..|+|||++. ....++.++||||+|++++++++|..||...
T Consensus       171 ~~~gt~~y~aPE~l~-~~~~~~~~~DiwSlG~il~eml~g~~pf~~~  216 (345)
T d1pmea_         171 EYVATRWYRAPEIML-NSKGYTKSIDIWSVGCILAEMLSNRPIFPGK  216 (345)
T ss_dssp             CCCSCGGGCCGGGTT-TBCSCSTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccceechHHHhh-cCCCCCchhhhhccCceehHHhhCCCCCCCC
Confidence            356999999999873 2346788999999999999999999998654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.5e-15  Score=95.49  Aligned_cols=112  Identities=14%  Similarity=0.089  Sum_probs=65.9

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC-----------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG-----------   71 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   71 (133)
                      ..+||+.|+|||.+. ....++.++|+||+|++++++++|+.||.+....      .............           
T Consensus       161 ~~~gt~~y~apE~~~-~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~  233 (298)
T d1gz8a_         161 HEVVTLWYRAPEILL-GCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEI------DQLFRIFRTLGTPDEVVWPGVTSM  233 (298)
T ss_dssp             CCBCCCTTCCHHHHT-TCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH------HHHHHHHHHHCCCCTTTSTTGGGS
T ss_pred             eecccceeeehhhhc-cccCCCccccccccchhhhHHhhCCCCCCCCCHH------HHHHHHHHhcCCCchhhccccccc
Confidence            357999999999873 2334578999999999999999999998653211      0000000000000           


Q ss_pred             --ccccccCCCChhHH----HHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCcc
Q 040499           72 --EDLKRHGLVTEEEE----VIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLE  121 (133)
Q Consensus        72 --~~~~~~~~~~~~~~----~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~  121 (133)
                        .....+........    .....+.+++..||+.||++|||+.|+++  .++++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~  291 (298)
T d1gz8a_         234 PDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTK  291 (298)
T ss_dssp             TTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             cccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCC
Confidence              00000000000000    11123455566699999999999999997  4665543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=9.6e-16  Score=98.57  Aligned_cols=104  Identities=16%  Similarity=0.081  Sum_probs=65.1

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHH-----------------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFY-----------------   65 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~-----------------   65 (133)
                      ..+||..|+|||++  .+..++.++||||+||+++++++|+.||.+.....      ......                 
T Consensus       177 ~~~~t~~y~aPE~l--~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~  248 (355)
T d2b1pa1         177 PYVVTRYYRAPEVI--LGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYID------QWNKVIEQLGTPCPEFMKKLQPT  248 (355)
T ss_dssp             ----CCTTCCHHHH--TTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH------HHHHHHHHHCCCCHHHHTTSCHH
T ss_pred             cccccccccChhhh--cCCCCCCCcccccccchHHHHhhCCCCCCCCCHHH------HHHHHHHhccCCCHHHHHHhhhh
Confidence            35689999999998  45688999999999999999999999986432110      000000                 


Q ss_pred             --hhhcCCccc-----------cccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH
Q 040499           66 --KLLEPGEDL-----------KRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE  114 (133)
Q Consensus        66 --~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~  114 (133)
                        .........           ................+.+|+.+||+.||++|||++|+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~  310 (355)
T d2b1pa1         249 VRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ  310 (355)
T ss_dssp             HHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence              000000000           0001112222334456778888899999999999999986

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.59  E-value=9.6e-16  Score=95.90  Aligned_cols=45  Identities=22%  Similarity=0.203  Sum_probs=36.9

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..|++.|++||.+. ....++.++|+||+|++++++++|+.||...
T Consensus       160 ~~~~~~y~~pE~~~-~~~~~~~~~DiwslGv~l~el~~G~~pf~~~  204 (286)
T d1ob3a_         160 EIVTLWYRAPDVLM-GSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (286)
T ss_dssp             --CCCTTCCHHHHT-TCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ecccchhhhHHHHh-CCCCCCcceeehhcCcHHHHHHHCCCCCCCC
Confidence            46889999999873 2345789999999999999999999998654

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.1e-15  Score=93.81  Aligned_cols=46  Identities=20%  Similarity=0.170  Sum_probs=39.2

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      +.+||..|+|||.+. ....++.++||||+||+++|+++|..||...
T Consensus       181 ~~~gt~~y~aPE~~~-~~~~~~~~~DIwSlG~il~el~~g~~pf~~~  226 (350)
T d1q5ka_         181 SYICSRYYRAPELIF-GATDYTSSIDVWSAGCVLAELLLGQPIFPGD  226 (350)
T ss_dssp             SCCSCTTSCCHHHHT-TCSSCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             cccccccccChHHhh-cccCCCcceeecccceEEEehhhCCCCCCCC
Confidence            467999999999873 2347899999999999999999999998654

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.4e-15  Score=94.37  Aligned_cols=106  Identities=13%  Similarity=0.099  Sum_probs=66.5

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCCCCCCCCcchhhhHHHHhhhcCC-----------
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASGVTHTSSTEMYFPDWFYKLLEPG-----------   71 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----------   71 (133)
                      +..||..|+|||.+. ....++.++||||+|++++++++|..||.+.....      ....+.......           
T Consensus       177 ~~~g~~~y~apE~~~-~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~  249 (348)
T d2gfsa1         177 GYVATRWYRAPEIML-NWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID------QLKLILRLVGTPGAELLKKISSE  249 (348)
T ss_dssp             SSCHHHHTSCHHHHT-TCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH------HHHHHHHHHCCCCHHHHTTCCCH
T ss_pred             cccccccccCchhhc-CCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHH------HHHHHHHhcCCCChHHhhhccch
Confidence            457899999999863 23356789999999999999999999987542210      000000000000           


Q ss_pred             ------------ccc---cccCCCChhHHHHHHHHHHhhhhhccCCCCCCCCHHHHHH--HHccCccC
Q 040499           72 ------------EDL---KRHGLVTEEEEVIVRKMIIVRLWCIQTNPSDRSSMSKAVE--MLEGGLEA  122 (133)
Q Consensus        72 ------------~~~---~~~~~~~~~~~~~~~~~~~l~~~cl~~~p~~Rps~~~v~~--~l~~~~~~  122 (133)
                                  ...   ......++.       +.+|+..||+.||.+|||++++++  .+.+....
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-------~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~~  310 (348)
T d2gfsa1         250 SARNYIQSLTQMPKMNFANVFIGANPL-------AVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP  310 (348)
T ss_dssp             HHHHHHTTSCCCCCCCHHHHSTTCCHH-------HHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCT
T ss_pred             hhhhhhhhcccCCCcchhhhcCCCCHH-------HHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCCC
Confidence                        000   001112333       445556699999999999999997  66665443

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.48  E-value=1.6e-14  Score=91.91  Aligned_cols=46  Identities=11%  Similarity=0.212  Sum_probs=38.6

Q ss_pred             CCCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCCC
Q 040499            3 DARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTASG   49 (133)
Q Consensus         3 ~~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~~   49 (133)
                      ..+||..|+|||.+.+ ...++.++|+||+|++++++++|..||...
T Consensus       188 ~~~~t~~y~aPE~~~~-~~~~~~~~DiwslG~~l~e~~~g~~pf~~~  233 (328)
T d3bqca1         188 VRVASRYFKGPELLVD-YQMYDYSLDMWSLGCMLASMIFRKEPFFHG  233 (328)
T ss_dssp             SCCSCGGGCCHHHHTT-CCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             ccccCccccCcccccC-CCCCCcccchhhhhhhhHHhccCCCCCCCC
Confidence            4578999999998732 345789999999999999999999998654

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.7e-14  Score=86.78  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=35.2

Q ss_pred             CCccccccCccccccccCccccccchhhhhHHHHHHHccCCCCCC
Q 040499            4 ARGTVSYIAPEVFCRNFGGISHKSDVYGFGMTVLELVGVRNNTAS   48 (133)
Q Consensus         4 ~~gt~~~~ape~~~~~~~~~~~~~dv~s~g~~~~~l~~~~~p~~~   48 (133)
                      ..++..|++||.+.. ...++.++||||+|++++++++|+.|+..
T Consensus       161 ~~~~~~~~~pe~~~~-~~~~~~~~DiwSlG~il~ell~g~~p~~~  204 (292)
T d1unla_         161 EVVTLWYRPPDVLFG-AKLYSTSIDMWSAGCIFAELANAGRPLFP  204 (292)
T ss_dssp             CCSCGGGCCHHHHTT-CSCCCTHHHHHHHHHHHHHHTTTSCCSCC
T ss_pred             eccccchhhhhHhcc-CCCCCchhhccccchHHHHHhhCCCCCCC
Confidence            346788999998732 23468899999999999999999988643

>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Forkhead DNA-binding domain
domain: HFH-1 (HNF-3 forkhead homolog-1)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.15  E-value=0.56  Score=22.26  Aligned_cols=27  Identities=19%  Similarity=0.297  Sum_probs=20.8

Q ss_pred             hhhhhccCCCCCCCCHHHHHHHHccCc
Q 040499           94 VRLWCIQTNPSDRSSMSKAVEMLEGGL  120 (133)
Q Consensus        94 l~~~cl~~~p~~Rps~~~v~~~l~~~~  120 (133)
                      |+.+.+...|++|.++.||.+.+++..
T Consensus         4 LI~~Ai~~sp~~~ltL~eIy~~i~~~f   30 (75)
T d1kq8a_           4 LITMAIRDSAGGRLTLAEINEYLMGKF   30 (75)
T ss_dssp             HHHHHHTTSSSSCBCHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCccHHHHHHHHHHhC
Confidence            334456778999999999999887543