Citrus Sinensis ID: 040502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MDRDSVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDEDSEDSDEREKKRSAVSVSGISCSPSGSDVSDSGLPVRVFESECRYNEVFDVSTDLTLGLPVTELKKCDSVSQQENNSDDDKTSNTPSFGLEFLSVMQEMIRNEVRNYMEVAVRNAGFKRTGINKID
cccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccc
cccccccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHcHHEEEEEEcccc
mdrdsvservkgpwspeeDQLLLKLVQRYgarnwsvisksipgrsgkscrlrwcnqlspevehrtftpdedEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAagvdedsedsderekKRSAVSvsgiscspsgsdvsdsglpvrvfesecrynevfdvstdltlglpvtelkkcdsvsqqennsdddktsntpsfGLEFLSVMQEMIRNEVRNYMEVAVRnagfkrtginkid
mdrdsvservkgpwspeedQLLLKLVQRYGarnwsvisksipgrsgkscrLRWCNQLspevehrtftpdeDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALaagvdedsedsderekkrsavsvsgiscspsgsdvsdsgLPVRVFESECRYNEVFDVSTDLTLGLPVTELKKcdsvsqqennsdddktsntpSFGLEFLSVMQEMIRNEVRNYMEVavrnagfkrtginkid
MDRDSVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVdedsedsderekkrsavsvsgiscspsgsdvsdsgLPVRVFESECRYNEVFDVSTDLTLGLPVTELKKCDSVSQQENNSDDDKTSNTPSFGLEFLSVMQEMIRNEVRNYMEVAVRNAGFKRTGINKID
*******************QLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK*************************************************PVRVFESECRYNEVFDVSTDLTLGLPVTELK**********************FGLEFLSVMQEMIRNEVRNYMEVAVRNAGFK********
******S****GPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLK*************************************************************************************************************LSVMQEMIRNEVRNYMEV*V*NAGFKRTGINKI*
***************PEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRS****************************************GLPVRVFESECRYNEVFDVSTDLTLGLPVTELKK*****************NTPSFGLEFLSVMQEMIRNEVRNYMEVAVRNAGFKRTGINKID
****SVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAA***************************************************VFDVSTDLTLGLPVTELKKCDSVSQQENNSDDDKTSNTPSFGLEFLSVMQEMIRNEVRNYMEVAVRNAGFKRTGINK**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDRDSVSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDEDSEDSDEREKKRSAVSVSGISCSPSGSDVSDSGLPVRVFESECRYNEVFDVSTDLTLGLPVTELKKCDSVSQQENNSDDDKTSNTPSFGLEFLSVMQEMIRNEVRNYMEVAVRNAGFKRTGINKID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
Q9FDW1305 Transcription factor MYB4 no no 0.873 0.721 0.475 1e-56
P46200 640 Transcriptional activator yes no 0.563 0.221 0.444 8e-35
P10242 640 Transcriptional activator no no 0.412 0.162 0.615 8e-35
P01103 641 Transcriptional activator yes no 0.583 0.229 0.470 1e-34
P06876 636 Transcriptional activator no no 0.412 0.163 0.615 1e-34
P10243 752 Myb-related protein A OS= no no 0.412 0.138 0.596 5e-34
P51960 751 Myb-related protein A OS= no no 0.412 0.138 0.596 5e-34
Q08759 624 Transcriptional activator N/A no 0.412 0.166 0.596 1e-33
P52550 757 Myb-related protein A OS= no no 0.412 0.137 0.586 1e-33
Q05935 728 Myb-related protein A OS= N/A no 0.412 0.142 0.596 1e-33
>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1 Back     alignment and function desciption
 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 134/282 (47%), Positives = 169/282 (59%), Gaps = 62/282 (21%)

Query: 6   VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRT 65
           +++R+KGPWSPEED+ L +LV +YG RNW+VISKSIPGRSGKSCRLRWCNQLSP+VEHR 
Sbjct: 1   MADRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRP 60

Query: 66  FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVD 125
           F+ +EDE I +AHA++GNKWATIARLLNGRTDNA+KNHWNSTLKRK           G D
Sbjct: 61  FSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK---------CGGYD 111

Query: 126 EDSEDS--DEREKKRSAVS-----VSGI---SCSPSGSDVSDSG----LP-VRVFESECR 170
               D   D R  KRS  +     V+G+     SP+GSDVSDS     LP V +F+   R
Sbjct: 112 HRGYDGSEDHRPVKRSVSAGSPPVVTGLYMSPGSPTGSDVSDSSTIPILPSVELFKPVPR 171

Query: 171 YNEVF------------DVSTDLTLGLPVTELKKCDSVSQQENNSDDDKTS-----NTPS 213
              V             D  T L+L LP  ++ +  + S +  N ++  +S     NT S
Sbjct: 172 PGAVVLPLPIETSSSSDDPPTSLSLSLPGADVSEESNRSHESTNINNTTSSRHNHNNTVS 231

Query: 214 F---------------------GLEFLSVMQEMIRNEVRNYM 234
           F                     G EF++V+QEMI+ EVR+YM
Sbjct: 232 FMPFSGGFRGAIEEMGKSFPGNGGEFMAVVQEMIKAEVRSYM 273
Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)
>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1 Back     alignment and function description
>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2 Back     alignment and function description
>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1 Back     alignment and function description
>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2 Back     alignment and function description
>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2 Back     alignment and function description
>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2 Back     alignment and function description
>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1 Back     alignment and function description
>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1 Back     alignment and function description
>sp|Q05935|MYBA_XENLA Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
302398931289 MYB domain class transcription factor [M 0.968 0.844 0.563 4e-73
377823703259 MYB transcription factor MYB68 [Glycine 0.892 0.868 0.510 4e-63
224096696330 predicted protein [Populus trichocarpa] 0.900 0.687 0.501 9e-63
225438837312 PREDICTED: transcription factor MYB44 [V 0.948 0.766 0.461 4e-62
224103663245 predicted protein [Populus trichocarpa] 0.869 0.893 0.564 4e-62
225428910303 PREDICTED: transcription factor MYB44 [V 0.960 0.798 0.469 7e-62
63054325312 sucrose responsive element binding prote 0.952 0.769 0.456 2e-61
302142263261 unnamed protein product [Vitis vinifera] 0.884 0.854 0.526 3e-61
351724603297 MYB transcription factor MYB50 [Glycine 0.944 0.801 0.460 4e-61
225458725313 PREDICTED: transcription factor MYB44-li 0.948 0.763 0.463 1e-60
>gi|302398931|gb|ADL36760.1| MYB domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 160/284 (56%), Positives = 189/284 (66%), Gaps = 40/284 (14%)

Query: 8   ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFT 67
           +RVKGPWSP+ED+ L ++VQRYGARNWSVISKS+PGRSGKSCRLRWCNQLSPEVEHR FT
Sbjct: 7   DRVKGPWSPDEDEKLRQIVQRYGARNWSVISKSVPGRSGKSCRLRWCNQLSPEVEHRAFT 66

Query: 68  PDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAETTRSALAAGVDED 127
           P+EDEII  AHA+YGNKWATIARLLNGRTDNAIKNHWNSTLKRK++  + +   A +DE 
Sbjct: 67  PEEDEIIAGAHAKYGNKWATIARLLNGRTDNAIKNHWNSTLKRKFSALSPNEDGATIDEG 126

Query: 128 SEDSDEREKKRSAVSVSGI---SCSPSGSDVSDSGLPV----RVF------------ESE 168
                E++   +AVS SG+     SPSGSDVS+S +P     +VF            ES 
Sbjct: 127 IL-RPEKKTATAAVSFSGLCYSPGSPSGSDVSESDVPASSSSQVFRPVARTAAIVTRESP 185

Query: 169 CRYNEVFDVSTDLTLGLP-----VTELKKCDS--------VSQQENNSDDDKTSNTPSFG 215
               E  + ST LTL LP     + EL   +S         S Q     +   SNT SFG
Sbjct: 186 PSQTEWCEPSTLLTLSLPGAESALHELPTNESAPHRGQRTASLQPEKETNVNNSNTMSFG 245

Query: 216 LEFLSVMQEMIRNEVRNYMEVA-------VRNAGFKRTGINKID 252
            EF+SVMQEMIR EVR+YME A       VRNAG KR GI+++D
Sbjct: 246 PEFMSVMQEMIRKEVRSYMEGAACSQGEGVRNAGVKRIGISRLD 289

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|377823703|ref|NP_001235715.1| MYB transcription factor MYB68 [Glycine max] gi|110931664|gb|ABH02831.1| MYB transcription factor MYB68 [Glycine max] Back     alignment and taxonomy information
>gi|224096696|ref|XP_002310702.1| predicted protein [Populus trichocarpa] gi|222853605|gb|EEE91152.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225438837|ref|XP_002283347.1| PREDICTED: transcription factor MYB44 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103663|ref|XP_002313145.1| predicted protein [Populus trichocarpa] gi|222849553|gb|EEE87100.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225428910|ref|XP_002285389.1| PREDICTED: transcription factor MYB44 [Vitis vinifera] Back     alignment and taxonomy information
>gi|63054325|gb|AAY28930.1| sucrose responsive element binding protein [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142263|emb|CBI19466.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|351724603|ref|NP_001238087.1| MYB transcription factor MYB50 [Glycine max] gi|110931650|gb|ABH02824.1| MYB transcription factor MYB50 [Glycine max] Back     alignment and taxonomy information
>gi|225458725|ref|XP_002285015.1| PREDICTED: transcription factor MYB44-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
TAIR|locus:2158212305 MYBR1 "AT5G67300" [Arabidopsis 0.420 0.347 0.783 2.4e-55
TAIR|locus:2058613309 MYB70 "myb domain protein 70" 0.412 0.336 0.846 2.6e-55
TAIR|locus:2115060320 MYB73 "myb domain protein 73" 0.412 0.325 0.846 6.9e-55
TAIR|locus:2083113301 MYB77 "myb domain protein 77" 0.420 0.352 0.783 2e-51
TAIR|locus:2078961 399 MYB109 "myb domain protein 109 0.432 0.273 0.669 1.8e-39
TAIR|locus:2083489393 MYB1 "myb domain protein 1" [A 0.424 0.272 0.682 2.6e-38
ZFIN|ZDB-GENE-991110-14 641 cmyb "transcription factor cmy 0.412 0.162 0.605 3.1e-35
TAIR|locus:2061242367 MYB25 "myb domain protein 25" 0.420 0.288 0.622 6.5e-35
UNIPROTKB|Q03237 686 MYBL2 "Myb-related protein B" 0.404 0.148 0.588 5.7e-34
UNIPROTKB|E9PIW4385 MYB "Transcriptional activator 0.412 0.270 0.615 9.5e-34
TAIR|locus:2158212 MYBR1 "AT5G67300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 480 (174.0 bits), Expect = 2.4e-55, Sum P(3) = 2.4e-55
 Identities = 83/106 (78%), Positives = 98/106 (92%)

Query:     6 VSERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRT 65
             +++R+KGPWSPEED+ L +LV +YG RNW+VISKSIPGRSGKSCRLRWCNQLSP+VEHR 
Sbjct:     1 MADRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRP 60

Query:    66 FTPDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
             F+ +EDE I +AHA++GNKWATIARLLNGRTDNA+KNHWNSTLKRK
Sbjct:    61 FSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA
GO:0009651 "response to salt stress" evidence=IEP;IMP
GO:0009723 "response to ethylene stimulus" evidence=IEP
GO:0009733 "response to auxin stimulus" evidence=IEP
GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0010200 "response to chitin" evidence=IEP
GO:0009414 "response to water deprivation" evidence=IEP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IEP
GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP
GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP
TAIR|locus:2058613 MYB70 "myb domain protein 70" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115060 MYB73 "myb domain protein 73" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083113 MYB77 "myb domain protein 77" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078961 MYB109 "myb domain protein 109" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-991110-14 cmyb "transcription factor cmyb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q03237 MYBL2 "Myb-related protein B" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PIW4 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014887001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (279 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
PLN03091 459 PLN03091, PLN03091, hypothetical protein; Provisio 1e-28
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 4e-25
COG5147 512 COG5147, REB1, Myb superfamily proteins, including 7e-19
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 1e-18
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 9e-16
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 6e-15
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 9e-15
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 1e-13
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 1e-11
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 5e-11
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 4e-09
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 1e-05
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  112 bits (281), Expect = 1e-28
 Identities = 63/141 (44%), Positives = 84/141 (59%), Gaps = 9/141 (6%)

Query: 11  KGPWSPEEDQLLLKLVQRYGARNWSVISKSIP-GRSGKSCRLRWCNQLSPEVEHRTFTPD 69
           KG WSPEED+ LL+ + +YG   WS + K     R GKSCRLRW N L P+++  TF+  
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQ 73

Query: 70  EDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRKYAE-----TTRSALAA-- 122
           E+ +II+ HA  GN+W+ IA  L GRTDN IKN WNS LK+K  +      T   L+   
Sbjct: 74  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE 133

Query: 123 -GVDEDSEDSDEREKKRSAVS 142
            G D++    D+ +K  S VS
Sbjct: 134 NGEDKNPPTDDKSDKASSVVS 154

Length = 459
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
KOG0048238 consensus Transcription factor, Myb superfamily [T 100.0
PLN03212249 Transcription repressor MYB5; Provisional 99.98
PLN03091 459 hypothetical protein; Provisional 99.97
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.77
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.75
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.66
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.62
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.62
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.46
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.45
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.44
PLN03212249 Transcription repressor MYB5; Provisional 99.44
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.4
PLN03091 459 hypothetical protein; Provisional 99.32
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.28
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.25
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.16
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.14
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.06
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.02
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 98.38
COG5147 512 REB1 Myb superfamily proteins, including transcrip 98.16
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.82
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 97.76
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.73
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.73
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.55
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 97.39
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 97.16
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.14
PRK13923170 putative spore coat protein regulator protein YlbO 97.09
KOG1279506 consensus Chromatin remodeling factor subunit and 97.03
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.97
KOG1279506 consensus Chromatin remodeling factor subunit and 96.89
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 96.8
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 96.77
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 96.01
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.84
PLN031421033 Probable chromatin-remodeling complex ATPase chain 95.66
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 95.47
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.38
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 95.37
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 95.29
PRK13923170 putative spore coat protein regulator protein YlbO 94.44
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 94.23
KOG2656 445 consensus DNA methyltransferase 1-associated prote 93.85
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 93.01
KOG4282345 consensus Transcription factor GT-2 and related pr 92.39
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 92.22
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 89.7
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 89.32
KOG1194 534 consensus Predicted DNA-binding protein, contains 89.28
KOG4167907 consensus Predicted DNA-binding protein, contains 88.64
PF1162687 Rap1_C: TRF2-interacting telomeric protein/Rap1 - 85.67
PF1340442 HTH_AsnC-type: AsnC-type helix-turn-helix domain; 82.8
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 82.67
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-34  Score=254.81  Aligned_cols=109  Identities=46%  Similarity=0.864  Sum_probs=105.2

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCCChH
Q 040502            8 ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIP-GRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWA   86 (252)
Q Consensus         8 ~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lp-gRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~   86 (252)
                      ..+||+||+|||++|+++|++||.++|..|++.++ +|++++||.||.|||+|.+++|.||+|||++|+++|..||++|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            35589999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHhhhhhhhhh
Q 040502           87 TIARLLNGRTDNAIKNHWNSTLKRKYAETT  116 (252)
Q Consensus        87 ~IA~~lpgRT~~qck~Rw~~~lk~k~~~~~  116 (252)
                      .||++|||||++.|||+|++.|++++....
T Consensus        86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999987764

>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription] Back     alignment and domain information
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres [] Back     alignment and domain information
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 3e-35
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 4e-35
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 5e-35
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 4e-33
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 2e-32
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 2e-23
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 7e-18
2k9n_A107 Solution Nmr Structure Of The R2r3 Dna Binding Doma 1e-15
1idy_A54 Structure Of Myb Transforming Protein, Nmr, Minimiz 4e-14
1gvd_A52 Crystal Structure Of C-Myb R2 V103l Mutant Length = 5e-14
1mbj_A53 Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 1e-13
1gv5_A52 Crystal Structure Of C-Myb R2 Length = 52 1e-13
1mbg_A53 Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 3e-13
1mbe_A53 Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53 2e-05
1guu_A52 Crystal Structure Of C-Myb R1 Length = 52 2e-05
2d9a_A60 Solution Structure Of Rsgi Ruh-050, A Myb Dna-Bindi 2e-04
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 83/104 (79%)
Query: 8   ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFT 67
           E +KGPW+ EEDQ ++KLVQ+YG + WSVI+K + GR GK CR RW N L+PEV+  ++T
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 68  PDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
            +ED II +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107 Back     alignment and structure
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54 Back     alignment and structure
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52 Back     alignment and structure
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 Back     alignment and structure
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52 Back     alignment and structure
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 Back     alignment and structure
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53 Back     alignment and structure
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52 Back     alignment and structure
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding Domain In Mouse Cdna Length = 60 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 5e-71
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 6e-70
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 7e-11
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 7e-70
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 3e-66
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 3e-65
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 1e-63
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-38
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 2e-31
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 4e-04
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 8e-31
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-06
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 7e-29
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 2e-27
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 4e-13
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 6e-05
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 5e-13
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 7e-04
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 7e-12
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 7e-05
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 7e-12
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 1e-04
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-11
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-07
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 1e-10
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 3e-05
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 2e-10
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 1e-08
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 4e-04
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 2e-08
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 2e-08
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 3e-05
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 2e-08
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 9e-07
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 5e-08
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 5e-04
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 5e-08
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 6e-08
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 1e-07
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 4e-07
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 5e-07
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 2e-05
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 2e-04
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 8e-04
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 8e-04
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
 Score =  212 bits (541), Expect = 5e-71
 Identities = 65/104 (62%), Positives = 83/104 (79%)

Query: 8   ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFT 67
           E +KGPW+ EEDQ ++KLVQ+YG + WSVI+K + GR GK CR RW N L+PEV+  ++T
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60

Query: 68  PDEDEIIIKAHARYGNKWATIARLLNGRTDNAIKNHWNSTLKRK 111
            +ED II +AH R GN+WA IA+LL GRTDNAIKNHWNST++RK
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 100.0
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 100.0
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 100.0
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 100.0
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 100.0
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.97
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.97
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.89
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.86
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.78
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.74
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.73
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.72
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.72
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.71
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.71
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.7
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.69
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.68
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.68
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.67
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.65
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.65
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.64
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.63
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.62
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.62
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.62
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.6
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.6
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.59
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.58
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.58
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.58
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.57
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.56
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.55
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.54
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.52
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.27
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.48
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.48
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.47
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.46
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.42
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.4
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.39
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.09
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.35
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.35
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.29
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.28
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.28
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.27
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.24
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.24
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.08
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.05
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.02
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.89
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 98.89
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.88
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.83
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.67
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.67
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.61
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.6
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.51
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.48
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.43
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.13
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 98.12
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 98.07
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.06
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.0
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 97.21
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.9
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 97.78
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.77
2crg_A70 Metastasis associated protein MTA3; transcription 97.73
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.59
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.56
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.4
2crg_A70 Metastasis associated protein MTA3; transcription 97.4
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.38
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 96.37
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 97.1
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 96.94
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.7
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.62
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 94.54
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 94.49
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 93.58
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 92.56
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 91.98
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 91.7
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 91.08
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
Probab=100.00  E-value=1.4e-35  Score=230.44  Aligned_cols=105  Identities=62%  Similarity=1.132  Sum_probs=99.8

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHHhCCChHH
Q 040502            8 ERVKGPWSPEEDQLLLKLVQRYGARNWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHARYGNKWAT   87 (252)
Q Consensus         8 ~~~Kg~WT~eED~~L~~~V~~~g~~nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~~G~~W~~   87 (252)
                      +.+||+||+|||++|+++|++||..+|..||..|||||+.||+.||.++|+|.+++++||+|||++|+++|.+||++|+.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            46899999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHhhhhh
Q 040502           88 IARLLNGRTDNAIKNHWNSTLKRKY  112 (252)
Q Consensus        88 IA~~lpgRT~~qck~Rw~~~lk~k~  112 (252)
                      ||+.|||||+++|++||+.++++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999998763
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 252
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 2e-23
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 1e-10
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-22
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 2e-10
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 7e-22
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 4e-11
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-18
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 2e-05
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 4e-15
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 1e-14
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 1e-14
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 2e-06
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 2e-13
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 9e-08
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 8e-13
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 2e-12
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 1e-12
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 5e-07
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 1e-12
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 7e-12
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 1e-12
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 1e-12
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 3e-12
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 6e-09
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 3e-12
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 1e-05
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 2e-09
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 2e-08
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.5 bits (219), Expect = 2e-23
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 11 KGPWSPEEDQLLLKLVQRYGAR-----NWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRT 65
          K  ++ EED+ +L +V++   R      +  IS  +P  +G S R R+   LS  +E+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 66 FTPDEDEIIIKAHARYGN 83
                +++         
Sbjct: 61 EVDKFGKLVRDDDGNLIK 78
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.77
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.76
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.72
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.7
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.67
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.62
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.61
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.57
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.57
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.54
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.53
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.53
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.52
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.51
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.47
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.46
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.41
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.37
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.37
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.36
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.35
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.34
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.25
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.23
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.21
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.07
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.03
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.8
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.26
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.26
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.94
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.9
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 97.38
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 97.35
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 97.24
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.87
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 96.73
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 96.25
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 95.32
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 94.6
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 93.68
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 91.62
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 85.08
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=8.7e-22  Score=146.20  Aligned_cols=70  Identities=24%  Similarity=0.372  Sum_probs=64.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CcccccccccccccccccccccccCCCcccCCCCChHHHHHHHHHHHH
Q 040502           11 KGPWSPEEDQLLLKLVQRYGAR-----NWSVISKSIPGRSGKSCRLRWCNQLSPEVEHRTFTPDEDEIIIKAHAR   80 (252)
Q Consensus        11 Kg~WT~eED~~L~~~V~~~g~~-----nW~~Ia~~lpgRs~~qcr~Rw~~~L~p~~~~~~WT~eED~~Ll~lv~~   80 (252)
                      |++||+|||++|+++|.+||..     +|..||..|||||++||+.||.++|+|.+++++||++||.+|+..+..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999975     399999999999999999999999999999999999999998765533
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure